Query 031283
Match_columns 162
No_of_seqs 112 out of 1280
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 5.9E-38 2E-42 205.2 2.0 73 2-76 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.4E-37 4.7E-42 208.2 2.3 75 2-78 1-75 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.6E-36 8.9E-41 205.3 0.8 71 1-73 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 3.5E-36 1.2E-40 202.2 -0.8 71 1-73 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.7E-35 6E-40 202.5 -0.5 69 1-71 9-77 (103)
6 2l16_A SEC-independent protein 80.2 0.09 3.1E-06 33.6 -2.8 30 43-76 16-45 (78)
7 2oa5_A Hypothetical protein BQ 74.3 16 0.00055 24.5 6.9 59 82-140 8-68 (110)
8 1a93_B MAX protein, coiled coi 73.1 5.7 0.0002 21.0 3.6 27 82-108 7-33 (34)
9 2rpa_A Katanin P60 ATPase-cont 72.3 2 6.9E-05 27.2 2.0 36 29-77 16-51 (78)
10 1j1d_C Troponin I, TNI; THIN f 63.2 35 0.0012 23.7 7.1 31 111-141 53-83 (133)
11 1m2d_A [2Fe-2S] ferredoxin; th 56.4 5.6 0.00019 26.3 2.0 32 39-72 59-90 (110)
12 1t6f_A Geminin; coiled-coil, c 54.0 17 0.00058 19.3 3.1 25 78-102 10-34 (37)
13 1g6u_A Domain swapped dimer; d 53.6 26 0.00087 19.1 4.5 22 114-135 15-36 (48)
14 3hvz_A Uncharacterized protein 51.2 12 0.00039 23.5 2.7 26 44-70 7-32 (78)
15 3qx3_A DNA topoisomerase 2-bet 49.7 1.1E+02 0.0038 27.4 9.5 26 45-74 598-623 (803)
16 1j1d_B Troponin T, TNT; THIN f 49.3 44 0.0015 22.2 5.5 30 112-141 38-67 (106)
17 1p9i_A Cortexillin I/GCN4 hybr 46.4 27 0.00092 17.3 3.0 25 119-143 2-26 (31)
18 4gfh_A DNA topoisomerase 2; to 44.5 1.2E+02 0.004 28.5 9.3 42 27-74 959-1000(1177)
19 3tnu_B Keratin, type II cytosk 43.0 51 0.0017 22.3 5.2 61 81-143 42-102 (129)
20 2yy0_A C-MYC-binding protein; 41.5 26 0.00088 20.2 2.9 21 83-103 27-47 (53)
21 3tnu_A Keratin, type I cytoske 41.0 57 0.0019 22.1 5.2 62 80-143 43-104 (131)
22 1x4t_A Hypothetical protein LO 40.7 72 0.0025 20.6 5.7 35 79-113 49-83 (92)
23 1ytz_T Troponin T; muscle, THI 40.6 29 0.001 23.1 3.5 31 111-141 37-67 (107)
24 3nrf_A APAG protein; structura 40.5 4.2 0.00014 27.2 -0.7 43 11-58 21-63 (106)
25 1j1e_C Troponin I, TNI; THIN f 38.9 1.1E+02 0.0038 22.2 7.0 31 111-141 53-83 (180)
26 2l5g_A GPS2 protein, G protein 38.0 40 0.0014 18.1 3.0 27 117-143 9-35 (38)
27 2zvv_Y Cyclin-dependent kinase 35.7 10 0.00035 18.4 0.5 12 15-26 15-26 (26)
28 3t98_B Nucleoporin NUP58/NUP45 34.4 93 0.0032 20.0 6.6 62 78-141 8-69 (93)
29 3twe_A Alpha4H; unknown functi 34.2 43 0.0015 16.1 3.4 6 87-92 13-18 (27)
30 3teq_A Stromal interaction mol 33.4 1E+02 0.0035 20.2 5.6 52 87-139 33-84 (101)
31 2ky6_A Mediator of RNA polymer 32.5 35 0.0012 24.6 3.0 21 36-56 116-136 (166)
32 3ghg_A Fibrinogen alpha chain; 30.9 1.1E+02 0.0036 26.2 6.1 18 114-131 171-188 (562)
33 2dgc_A Protein (GCN4); basic d 30.9 70 0.0024 18.9 3.8 28 81-108 29-56 (63)
34 4dci_A Uncharacterized protein 30.8 1.4E+02 0.0048 21.0 6.9 57 86-145 40-99 (150)
35 2kmm_A Guanosine-3',5'-BIS(dip 30.0 46 0.0016 19.5 3.0 26 45-71 3-28 (73)
36 1a0r_P Phosducin, MEKA, PP33; 29.6 43 0.0015 25.3 3.3 34 111-144 67-102 (245)
37 2jo8_A Serine/threonine-protei 27.8 50 0.0017 19.0 2.6 21 112-132 6-26 (51)
38 2wt7_A Proto-oncogene protein 27.4 86 0.003 18.4 3.8 25 82-106 23-47 (63)
39 1ybx_A Conserved hypothetical 27.4 1.1E+02 0.0037 21.4 4.8 31 118-148 100-130 (143)
40 1dd4_C 50S ribosomal protein L 27.3 38 0.0013 18.4 1.9 22 111-132 8-29 (40)
41 2ygg_A Sodium/hydrogen exchang 27.2 92 0.0032 19.0 3.9 25 115-139 3-27 (70)
42 2wvr_A Geminin; DNA replicatio 26.8 78 0.0027 23.5 4.1 27 77-103 117-143 (209)
43 1deb_A APC protein, adenomatou 24.9 93 0.0032 17.8 3.3 21 85-105 6-26 (54)
44 1nkp_B MAX protein, MYC proto- 24.1 83 0.0028 19.4 3.4 27 81-107 53-79 (83)
45 3ghg_A Fibrinogen alpha chain; 24.1 3.4E+02 0.012 23.2 8.4 13 121-133 147-159 (562)
46 2l5g_B Putative uncharacterize 24.0 98 0.0034 17.0 3.5 28 115-142 1-28 (42)
47 2wt7_B Transcription factor MA 23.1 1.3E+02 0.0043 19.3 4.1 22 84-105 57-78 (90)
48 3hnw_A Uncharacterized protein 22.0 2E+02 0.0067 19.7 7.2 11 51-61 15-25 (138)
49 2yan_A Glutaredoxin-3; oxidore 21.9 54 0.0019 20.6 2.3 28 45-72 19-46 (105)
50 2lw1_A ABC transporter ATP-bin 21.4 1.6E+02 0.0054 18.4 6.7 43 88-130 21-67 (89)
51 2zjr_V 50S ribosomal protein L 20.9 1.4E+02 0.0049 17.7 4.1 24 113-136 6-29 (67)
52 2v71_A Nuclear distribution pr 20.9 2.5E+02 0.0085 20.5 7.4 7 55-61 3-9 (189)
53 3tso_C RAB11 family-interactin 20.8 1.6E+02 0.0054 18.2 4.6 22 121-142 37-58 (75)
54 1dh3_A Transcription factor CR 20.7 1.3E+02 0.0045 17.2 3.8 28 82-109 22-49 (55)
55 2phn_A F420-0:gamma-glutamyl l 20.7 24 0.00082 27.2 0.3 28 34-61 138-165 (254)
56 2k1v_A Insulin-like peptide IN 20.6 31 0.0011 16.9 0.6 9 32-40 14-22 (26)
57 3m9b_A Proteasome-associated A 20.4 1.2E+02 0.004 23.3 4.1 30 80-109 66-95 (251)
58 3gx8_A Monothiol glutaredoxin- 20.3 60 0.0021 21.4 2.3 29 45-73 18-46 (121)
59 1ci6_A Transcription factor AT 20.0 1.4E+02 0.0049 17.4 3.8 24 84-107 25-48 (63)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=5.9e-38 Score=205.16 Aligned_cols=73 Identities=41% Similarity=0.692 Sum_probs=69.1
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+ +++|++||...++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999999999999999999999885 8999999997654
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.4e-37 Score=208.24 Aligned_cols=75 Identities=40% Similarity=0.668 Sum_probs=71.6
Q ss_pred CCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhccc
Q 031283 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVD 78 (162)
Q Consensus 2 gR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~~ 78 (162)
||+||+|++|+|+++|++||+|||+||||||.||||||||+||+|||||+|++|+|++|+ +.+||+||...++..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~--~~~il~rY~~~~~~~ 75 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNEPH 75 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHCCSCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC--HHHHHHHHHhcCccc
Confidence 899999999999999999999999999999999999999999999999999999999975 899999999877643
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.6e-36 Score=205.33 Aligned_cols=71 Identities=38% Similarity=0.564 Sum_probs=68.1
Q ss_pred CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (162)
Q Consensus 1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~ 73 (162)
|||+||+|++|+|+.+|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+ +..|+++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999999999999999997 6689988864
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=3.5e-36 Score=202.19 Aligned_cols=71 Identities=32% Similarity=0.484 Sum_probs=67.4
Q ss_pred CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhh
Q 031283 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (162)
Q Consensus 1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~ 73 (162)
|||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+ +..+|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999997 6788886643
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.7e-35 Score=202.46 Aligned_cols=69 Identities=33% Similarity=0.503 Sum_probs=66.2
Q ss_pred CCCcccceeEecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHH
Q 031283 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLY 71 (162)
Q Consensus 1 MgR~ki~ik~I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry 71 (162)
|||+||+|++|+|+.+|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+ +..+|+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999997 67888764
No 6
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=80.18 E-value=0.09 Score=33.63 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.2
Q ss_pred EEEEEecCCCCcccccCCccchHHHHHHHhhhhc
Q 031283 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (162)
Q Consensus 43 va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~ 76 (162)
||+|||+| +|++..+. ++.+.+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHHH
Confidence 78999999 68888765 36778888887654
No 7
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=74.33 E-value=16 Score=24.54 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=42.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh--hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIRQR--MGESLNDLTLEELTGLEQDILDGLKIIHECKV 140 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~~~--~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~ 140 (162)
...+.|..++.+|+-+|..|.+.++.. -+++=.-|+..|=+.+....-.+|...-.+|.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KI 68 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKI 68 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999887652 12445778999999988888887776666653
No 8
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.12 E-value=5.7 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=21.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIRQR 108 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~~~ 108 (162)
......+++++.++++|..|+.+++.+
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 455677889999999999999877643
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.30 E-value=2 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=28.1
Q ss_pred hHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhhhcc
Q 031283 29 FKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRV 77 (162)
Q Consensus 29 ~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~~~~ 77 (162)
.|+|+|.+.+++=+.|++.|.. +.+-|++|.....+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-------------~~~qI~k~l~~~~d 51 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-------------VLDQMNKYLYSVKD 51 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-------------HHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhcChHHHHHHHHH-------------HHHHHHHHHHhcCC
Confidence 5899999999997777776643 66888999877653
No 10
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=63.19 E-value=35 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
-+++++|.++|+++-..|.+.+..+.+-|--
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYD 83 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYD 83 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4799999999999999999888888776643
No 11
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=56.38 E-value=5.6 Score=26.27 Aligned_cols=32 Identities=3% Similarity=0.060 Sum_probs=23.0
Q ss_pred ccccEEEEEecCCCCcccccCCccchHHHHHHHh
Q 031283 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (162)
Q Consensus 39 C~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~ 72 (162)
|+-.-.++|+ |+|..|...+|+ .+.+|++.|.
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e-~v~~il~~~l 90 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPE-DVDEIVEKHL 90 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGG-GHHHHHHHTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHH-HHHHHHHHHH
Confidence 4333345555 889888888887 7999999865
No 12
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=53.98 E-value=17 Score=19.34 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=14.9
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHHH
Q 031283 78 DLWSSHYEKMLENLGAVEQVNRILK 102 (162)
Q Consensus 78 ~~~~~~~~~lq~el~klk~~~~~l~ 102 (162)
+.++..++.-++++..|+.+|..+.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344455555667777777776654
No 13
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=53.64 E-value=26 Score=19.14 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 031283 114 NDLTLEELTGLEQDILDGLKII 135 (162)
Q Consensus 114 ~~Ls~eeL~~Le~~Le~~L~~i 135 (162)
++.|.+||..|+..|+..-+..
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999987766544333
No 14
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=51.16 E-value=12 Score=23.47 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=20.8
Q ss_pred EEEEecCCCCcccccCCccchHHHHHH
Q 031283 44 SILICSSTAKAHEYISPSTTTKQLLDL 70 (162)
Q Consensus 44 a~ivfsp~gk~~~~~~p~~~v~~ii~r 70 (162)
-+.||.|+|....++..+ .+.+++..
T Consensus 7 ~i~v~tP~G~~~~lp~Ga-T~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGS-TVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTC-BHHHHHHH
T ss_pred eEEEECCCCCEEEecCCC-CHHHHHHH
Confidence 378999999999999987 46666644
No 15
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=49.72 E-value=1.1e+02 Score=27.45 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=18.6
Q ss_pred EEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
+++|.+.|+.+.|.+ +++||..|-..
T Consensus 598 ~~l~d~~g~~pk~~~----l~eiL~~F~~~ 623 (803)
T 3qx3_A 598 MVLFDHMGCLKKYET----VQDILKEFFDL 623 (803)
T ss_dssp EEEECTTSCEEEESC----HHHHHHHHHHH
T ss_pred EEEECCCCCcceeCC----HHHHHHHHHHH
Confidence 466787777777765 56888888644
No 16
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=49.26 E-value=44 Score=22.18 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 112 SLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 112 ~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
++++||.++|+++-..|.+.+..+.+-|--
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYD 67 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFD 67 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999988888776643
No 17
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=46.43 E-value=27 Score=17.34 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 119 EELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 119 eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
++|..|...|+..-+..+++-++++
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788887777777777665
No 18
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=44.55 E-value=1.2e+02 Score=28.55 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=26.9
Q ss_pred chhHhhHHhhhhccccEEEEEecCCCCcccccCCccchHHHHHHHhhh
Q 031283 27 GLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (162)
Q Consensus 27 gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~~p~~~v~~ii~ry~~~ 74 (162)
+|+|.- .|.+-.++ .-+++|.+.|++..|.+ +++||..|...
T Consensus 959 ~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~----l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 959 GFYERF-KLISPISL-MNMVAFDPHGKIKKYNS----VNEILSEFYYV 1000 (1177)
T ss_dssp CHHHHT-TCEEEECC-SCCEEECTTSCEEECSS----HHHHHHHHHHH
T ss_pred hHHHhc-cCcceecc-eEEEEEcCCCCccCcCC----HHHHHHHHHHH
Confidence 444432 34433333 15788999999888865 56888887654
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.98 E-value=51 Score=22.29 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
...++.++.+++.++..+..|+..+...... .+.-+.+++.....|+..|..++.--...+
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~--~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQR--GELALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556778888888888888777766544321 234456667777777777777777655543
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.49 E-value=26 Score=20.25 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=9.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHH
Q 031283 83 HYEKMLENLGAVEQVNRILKK 103 (162)
Q Consensus 83 ~~~~lq~el~klk~~~~~l~~ 103 (162)
..+.++.++..|+.+++++..
T Consensus 27 E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.02 E-value=57 Score=22.14 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=40.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 80 WSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 80 ~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
+...++.++.+++.++..+..|+..+...... .++-+.+++.....|+..|..++.--...+
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~--~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGR--YCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888777766544321 233456667777777777777777655544
No 22
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=40.73 E-value=72 Score=20.62 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=26.7
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCC
Q 031283 79 LWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESL 113 (162)
Q Consensus 79 ~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L 113 (162)
+-+.++-.|.+++.+|-.+....+..++.+-|.+.
T Consensus 49 L~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY 83 (92)
T 1x4t_A 49 LGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDY 83 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34567778888888888888888888887777653
No 23
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=40.59 E-value=29 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
-++++||.++|+++-..|.+.+..+.+-|--
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYD 67 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYD 67 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999988888776643
No 24
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=40.53 E-value=4.2 Score=27.23 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=33.5
Q ss_pred ecCCCCcceeccccccchhHhhHHhhhhccccEEEEEecCCCCccccc
Q 031283 11 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYI 58 (162)
Q Consensus 11 I~n~~~R~~tf~KR~~gL~KKA~ELs~LC~v~va~ivfsp~gk~~~~~ 58 (162)
+.++.....||.=.-..|.++.-+|+. .|++.|+|.|+-|..-
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk-----~C~~a~~~~gkef~ld 63 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKN-----SCLVAQSAAGQSFRLD 63 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTT-----CEEEEEETTSCEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccch-----hhheeeCcCCCEEEec
Confidence 455666677888888889999999984 5689999999877543
No 25
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=38.94 E-value=1.1e+02 Score=22.24 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 111 ESLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
-++++||.++|+++-..|.+.+..+.+-|--
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYD 83 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYD 83 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999999998888777766543
No 26
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.99 E-value=40 Score=18.05 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031283 117 TLEELTGLEQDILDGLKIIHECKVIKP 143 (162)
Q Consensus 117 s~eeL~~Le~~Le~~L~~ir~RK~~l~ 143 (162)
+++|-.+=...++..|...++-|.+|+
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555556666666665554
No 27
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=35.66 E-value=10 Score=18.39 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.1
Q ss_pred CCcceecccccc
Q 031283 15 TNRQVTFSKRRN 26 (162)
Q Consensus 15 ~~R~~tf~KR~~ 26 (162)
+.|++.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 568888888874
No 28
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.41 E-value=93 Score=20.02 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=40.4
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 031283 78 DLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKVI 141 (162)
Q Consensus 78 ~~~~~~~~~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK~~ 141 (162)
+.+..-+.++++.+...+..++.++..+.... .-..+|+.+|......+.+..-.+-+|-.+
T Consensus 8 ~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s--~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~ 69 (93)
T 3t98_B 8 DYFRVLVQQFEVQLQQYRQQIEELENHLATQA--NNSHITPQDLSMAMQKIYQTFVALAAQLQS 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH--HHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777788888888888886553322 125678888888777777665555555444
No 29
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.25 E-value=43 Score=16.09 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.2
Q ss_pred hhhhhh
Q 031283 87 MLENLG 92 (162)
Q Consensus 87 lq~el~ 92 (162)
+|+.+.
T Consensus 13 lqerlr 18 (27)
T 3twe_A 13 LQERLR 18 (27)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 30
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=33.38 E-value=1e+02 Score=20.24 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=27.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031283 87 MLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (162)
Q Consensus 87 lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~eeL~~Le~~Le~~L~~ir~RK 139 (162)
..+..+|++++...+--..+-.-|.++|+++ ..+.+....|++.-...++|.
T Consensus 33 A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD-~~Il~Ak~aL~evt~~l~Er~ 84 (101)
T 3teq_A 33 AKEGAEKIKKKRNTLFGTFHVAHSSSLDDVD-HKILTAKQALSEATAALRERL 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHTCGGGGGTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchheeeehhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554444433333333456677776 455566666666666666665
No 31
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=32.52 E-value=35 Score=24.55 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=17.8
Q ss_pred hhhccccEEEEEecCCCCccc
Q 031283 36 TILCDAKVSILICSSTAKAHE 56 (162)
Q Consensus 36 s~LC~v~va~ivfsp~gk~~~ 56 (162)
+.-|++.|-+++|||+-+.|.
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 445999999999999888775
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.93 E-value=1.1e+02 Score=26.25 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 031283 114 NDLTLEELTGLEQDILDG 131 (162)
Q Consensus 114 ~~Ls~eeL~~Le~~Le~~ 131 (162)
..+++++...+.++|+..
T Consensus 171 ~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 171 REVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHHHHH
Confidence 344555555555555543
No 33
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.85 E-value=70 Score=18.93 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=20.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQR 108 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~~ 108 (162)
..++..|+.++..|+.+|..|..++..+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888887765443
No 34
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=30.84 E-value=1.4e+02 Score=20.99 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=35.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031283 86 KMLENLGAVEQVNRILKKQIRQRMGESLNDLTLE---ELTGLEQDILDGLKIIHECKVIKPYT 145 (162)
Q Consensus 86 ~lq~el~klk~~~~~l~~~~~~~~g~~L~~Ls~e---eL~~Le~~Le~~L~~ir~RK~~l~~~ 145 (162)
.+..++..|..+..++..++. ..+++.+++. ++..+-.+++.......++|++++..
T Consensus 40 q~d~elqQLefq~kr~~~e~~---~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~q 99 (150)
T 4dci_A 40 NADQQLAQLEQEGQTVVDQVR---RQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQ 99 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333332 2345555544 56778889999999999999888755
No 35
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=30.04 E-value=46 Score=19.51 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=20.6
Q ss_pred EEEecCCCCcccccCCccchHHHHHHH
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLY 71 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry 71 (162)
+.|+-|+|+..+|+.+. .+.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~-T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGA-TALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTC-BHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCC-cHHHHHHHH
Confidence 46778999999998775 677888776
No 36
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=29.59 E-value=43 Score=25.29 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhhh
Q 031283 111 ESLNDLTLEELTGLEQ--DILDGLKIIHECKVIKPY 144 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~--~Le~~L~~ir~RK~~l~~ 144 (162)
...+.++++||..++. .=+.-|..+|+++.+-+.
T Consensus 67 ~~~~~~~~~e~~~~~~d~eDe~fL~~~r~~Rl~el~ 102 (245)
T 1a0r_P 67 RFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMH 102 (245)
T ss_dssp -CCCCSCHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhccCChhhhhhcccccccHHHHHHHHHHHHHHHH
Confidence 4567789999988872 223466777777655444
No 37
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.79 E-value=50 Score=18.99 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 031283 112 SLNDLTLEELTGLEQDILDGL 132 (162)
Q Consensus 112 ~L~~Ls~eeL~~Le~~Le~~L 132 (162)
-|..+|.+||.+....|+..+
T Consensus 6 fLk~ls~eEL~~rl~~Ld~~M 26 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPMM 26 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHccHHH
Confidence 356779999988766665543
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.44 E-value=86 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHH
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIR 106 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~ 106 (162)
..++.|+.+++.|..+|..|..++.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888776653
No 39
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=27.43 E-value=1.1e+02 Score=21.41 Aligned_cols=31 Identities=10% Similarity=-0.066 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 031283 118 LEELTGLEQDILDGLKIIHECKVIKPYTLCA 148 (162)
Q Consensus 118 ~eeL~~Le~~Le~~L~~ir~RK~~l~~~~~~ 148 (162)
.+|...|++.+-.+++....+-.+...+.+.
T Consensus 100 peD~E~LeDLI~aAvNdA~~ka~e~~~e~M~ 130 (143)
T 1ybx_A 100 PDDVEMLQDLILAAVNEALRKADEMVTAEIS 130 (143)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666555555443
No 40
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=27.27 E-value=38 Score=18.38 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 031283 111 ESLNDLTLEELTGLEQDILDGL 132 (162)
Q Consensus 111 ~~L~~Ls~eeL~~Le~~Le~~L 132 (162)
+.|.+||+-|+.+|-+.|++.+
T Consensus 8 e~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 8 EAIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHHHH
Confidence 4578999999999999998764
No 41
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=27.21 E-value=92 Score=19.05 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 031283 115 DLTLEELTGLEQDILDGLKIIHECK 139 (162)
Q Consensus 115 ~Ls~eeL~~Le~~Le~~L~~ir~RK 139 (162)
.++.+++.++-+-|...|-.||+|-
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3788999999999999999999773
No 42
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=26.77 E-value=78 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=19.0
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHH
Q 031283 77 VDLWSSHYEKMLENLGAVEQVNRILKK 103 (162)
Q Consensus 77 ~~~~~~~~~~lq~el~klk~~~~~l~~ 103 (162)
...+...++.+++++..++++|..++.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888877654
No 43
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.95 E-value=93 Score=17.77 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=14.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 031283 85 EKMLENLGAVEQVNRILKKQI 105 (162)
Q Consensus 85 ~~lq~el~klk~~~~~l~~~~ 105 (162)
+.+-.+++.|+++|..+++++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 445566777777777777655
No 44
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.06 E-value=83 Score=19.36 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 031283 81 SSHYEKMLENLGAVEQVNRILKKQIRQ 107 (162)
Q Consensus 81 ~~~~~~lq~el~klk~~~~~l~~~~~~ 107 (162)
....+.++.+++.++.++..|+..+..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777766665543
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.06 E-value=3.4e+02 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.343 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 031283 121 LTGLEQDILDGLK 133 (162)
Q Consensus 121 L~~Le~~Le~~L~ 133 (162)
++.||..|+.++.
T Consensus 147 IQRLEvDIdiqir 159 (562)
T 3ghg_A 147 MKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 46
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.96 E-value=98 Score=16.95 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031283 115 DLTLEELTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 115 ~Ls~eeL~~Le~~Le~~L~~ir~RK~~l 142 (162)
++|-+||.+=.+.++.-...++++...+
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKL 28 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777666666554
No 47
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=23.09 E-value=1.3e+02 Score=19.34 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=11.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 031283 84 YEKMLENLGAVEQVNRILKKQI 105 (162)
Q Consensus 84 ~~~lq~el~klk~~~~~l~~~~ 105 (162)
...++.+++.++.++..+..++
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554443
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.99 E-value=2e+02 Score=19.73 Aligned_cols=11 Identities=9% Similarity=-0.157 Sum_probs=7.1
Q ss_pred CCCcccccCCc
Q 031283 51 TAKAHEYISPS 61 (162)
Q Consensus 51 ~gk~~~~~~p~ 61 (162)
.|+.|...+|.
T Consensus 15 ~Gk~Y~i~g~e 25 (138)
T 3hnw_A 15 GGKVIKLGGYE 25 (138)
T ss_dssp TTEEEEECSCS
T ss_pred CCEEEEecCCC
Confidence 36777766664
No 49
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.93 E-value=54 Score=20.61 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=19.8
Q ss_pred EEEecCCCCcccccCCccchHHHHHHHh
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry~ 72 (162)
+++|+-+-...+||+++..++.+++.+.
T Consensus 19 vvvf~~g~~~~~~C~~C~~~~~~L~~~~ 46 (105)
T 2yan_A 19 VMLFMKGNKQEAKCGFSKQILEILNSTG 46 (105)
T ss_dssp EEEEESBCSSSBCTTHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCCCCccHHHHHHHHHHCC
Confidence 6778764444678988877777777653
No 50
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.39 E-value=1.6e+02 Score=18.36 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHHHHHh----hhcCCCCCCCHHHHHHHHHHHHH
Q 031283 88 LENLGAVEQVNRILKKQIRQ----RMGESLNDLTLEELTGLEQDILD 130 (162)
Q Consensus 88 q~el~klk~~~~~l~~~~~~----~~g~~L~~Ls~eeL~~Le~~Le~ 130 (162)
+.+++.+..++..++.++.. +-.+++..-+.+.+..+...++.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~ 67 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAA 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence 34455555555555444322 23455554566666666555443
No 51
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=20.88 E-value=1.4e+02 Score=17.73 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=10.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 031283 113 LNDLTLEELTGLEQDILDGLKIIH 136 (162)
Q Consensus 113 L~~Ls~eeL~~Le~~Le~~L~~ir 136 (162)
|-++|.+||......+...|-..|
T Consensus 6 lr~~s~~EL~~~l~elk~ELf~LR 29 (67)
T 2zjr_V 6 MRNLQATDFAKEIDARKKELMELR 29 (67)
T ss_dssp TTTSCHHHHHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.88 E-value=2.5e+02 Score=20.47 Aligned_cols=7 Identities=14% Similarity=0.225 Sum_probs=3.1
Q ss_pred ccccCCc
Q 031283 55 HEYISPS 61 (162)
Q Consensus 55 ~~~~~p~ 61 (162)
+.|.+|.
T Consensus 3 ~~f~s~~ 9 (189)
T 2v71_A 3 MDFSSLK 9 (189)
T ss_dssp -CCSSHH
T ss_pred CCCCCHH
Confidence 4455554
No 53
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=20.84 E-value=1.6e+02 Score=18.22 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 031283 121 LTGLEQDILDGLKIIHECKVIK 142 (162)
Q Consensus 121 L~~Le~~Le~~L~~ir~RK~~l 142 (162)
+.+||+.++..|-+|=+.-=.+
T Consensus 37 v~eLEdYID~LLvRVME~~P~i 58 (75)
T 3tso_C 37 IRELEDYIDNLLVRVMEETPSI 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCcHH
Confidence 3445555555555554443333
No 54
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.72 E-value=1.3e+02 Score=17.16 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=19.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 031283 82 SHYEKMLENLGAVEQVNRILKKQIRQRM 109 (162)
Q Consensus 82 ~~~~~lq~el~klk~~~~~l~~~~~~~~ 109 (162)
..++.|..++..|..+|..|..++..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788888877776665443
No 55
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=20.67 E-value=24 Score=27.23 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=22.9
Q ss_pred HhhhhccccEEEEEecCCCCcccccCCc
Q 031283 34 ELTILCDAKVSILICSSTAKAHEYISPS 61 (162)
Q Consensus 34 ELs~LC~v~va~ivfsp~gk~~~~~~p~ 61 (162)
+|.-.+|++|++||+.+.|+++..+.+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4456789999999999999888777654
No 56
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=20.63 E-value=31 Score=16.91 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=6.6
Q ss_pred hHHhhhhcc
Q 031283 32 ARELTILCD 40 (162)
Q Consensus 32 A~ELs~LC~ 40 (162)
-.|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 368999995
No 57
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.43 E-value=1.2e+02 Score=23.32 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 031283 80 WSSHYEKMLENLGAVEQVNRILKKQIRQRM 109 (162)
Q Consensus 80 ~~~~~~~lq~el~klk~~~~~l~~~~~~~~ 109 (162)
+..+.+++.+.+..++.++..++.++..+.
T Consensus 66 L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 66 LAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666777766666665554
No 58
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.27 E-value=60 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.002 Sum_probs=22.2
Q ss_pred EEEecCCCCcccccCCccchHHHHHHHhh
Q 031283 45 ILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (162)
Q Consensus 45 ~ivfsp~gk~~~~~~p~~~v~~ii~ry~~ 73 (162)
|+|||-+....+||+.+..++++++.+.-
T Consensus 18 Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv 46 (121)
T 3gx8_A 18 VVLFMKGTPEFPKCGFSRATIGLLGNQGV 46 (121)
T ss_dssp EEEEESBCSSSBCTTHHHHHHHHHHHHTB
T ss_pred EEEEEeccCCCCCCccHHHHHHHHHHcCC
Confidence 78888765566788877788899988753
No 59
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.01 E-value=1.4e+02 Score=17.41 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=13.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHh
Q 031283 84 YEKMLENLGAVEQVNRILKKQIRQ 107 (162)
Q Consensus 84 ~~~lq~el~klk~~~~~l~~~~~~ 107 (162)
.+.++.+++.|+.+|..|+.++..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655554433
Done!