BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031284
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTQVA 243
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTQVA 249
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTQVA 249
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTQVA 249
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTQVA 243
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTQVA 249
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 55 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 107
Query: 129 NIYALV----GVPVVTVQLRYNGWVTELQ 153
N++ L+ G V V L +TE Q
Sbjct: 108 NLWILIEFCAGGAVDAVMLELERPLTESQ 136
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 55 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 107
Query: 129 NIYALV----GVPVVTVQLRYNGWVTELQ 153
N++ L+ G V V L +TE Q
Sbjct: 108 NLWILIEFCAGGAVDAVMLELERPLTESQ 136
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 55 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 107
Query: 129 NIYALV----GVPVVTVQLRYNGWVTELQ 153
N++ L+ G V V L +TE Q
Sbjct: 108 NLWILIEFCAGGAVDAVMLELERPLTESQ 136
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 28 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 80
Query: 129 NIYALV----GVPVVTVQLRYNGWVTELQ 153
N++ L+ G V V L +TE Q
Sbjct: 81 NLWILIEFCAGGAVDAVMLELERPLTESQ 109
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 156 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 215
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 216 LQ-QLRESSYEEAHKALCILPGVGTKVA 242
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTQVA 249
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 165 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGG--- 221
Query: 66 LRW--GCREILYDKAANAETYVKGLAMSKA 93
L W RE Y++A A + G+ A
Sbjct: 222 LAWLQQLRESSYEEAHKALCILPGVGTKVA 251
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 162 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 221
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 222 LQ-QLRESSYEEAHKALCILPGVGTKVA 248
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction
Mode Of Human 8-Oxoguanine Dna Glycosylase
Length = 360
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 180 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGG--- 236
Query: 66 LRW--GCREILYDKAANAETYVKGLA 89
L W RE Y++A A + G+
Sbjct: 237 LAWLQQLRESSYEEAHKALCILPGVG 262
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTKVA 249
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 157 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 216
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 217 LQ-QLRESSYEEAHKALCILPGVGTKVA 243
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65
A+ I D+++ ++ AL + EA L ++ G Y+S R + ++GG
Sbjct: 163 AFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAW 222
Query: 66 LRWGCREILYDKAANAETYVKGLAMSKA 93
L+ RE Y++A A + G+ A
Sbjct: 223 LQ-QLRESSYEEAHKALCILPGVGTKVA 249
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 46 DVYLSGPIRKYITDKGGRFH 65
DVYL GPI I + G FH
Sbjct: 600 DVYLQGPIWAKIPETGAHFH 619
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 74 LYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD--VPGIKRLLPSSWRE---MKFFN 128
L +K N + + L +K +DK + D+Y+ D + + LP ++ + F N
Sbjct: 3 LLEKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRN 62
Query: 129 NI 130
NI
Sbjct: 63 NI 64
>pdb|2QA0|A Chain A, Structure Of Adeno-Associated Virus Serotype 8
pdb|3RA2|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA4|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA8|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA9|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RAA|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
Length = 519
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 3 DPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGG 62
+PVA I DN+ + T + ++ +L M+ + DVYL GPI I G
Sbjct: 353 NPVATEEYGIVADNLQQQN--TAPQIGTVNSQGALPGMVWQNRDVYLQGPIWAKIPHTDG 410
Query: 63 RFH 65
FH
Sbjct: 411 NFH 413
>pdb|3DED|A Chain A, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|B Chain B, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|C Chain C, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|D Chain D, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|E Chain E, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
pdb|3DED|F Chain F, C-terminal Domain Of Probable Hemolysin From
Chromobacterium Violaceum
Length = 113
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 130 IYALVGVPVVTVQLRYNGWVTELQDLERSR 159
+Y L VP VT + +NG+ E+ D +R+R
Sbjct: 74 LYQLGRVPSVTDRFEWNGFSFEVVDXDRTR 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,606,721
Number of Sequences: 62578
Number of extensions: 169764
Number of successful extensions: 634
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 29
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)