Query 031284
Match_columns 162
No_of_seqs 142 out of 1032
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 99.9 2.1E-25 4.6E-30 196.5 15.8 152 1-152 249-400 (569)
2 TIGR02732 zeta_caro_desat caro 99.9 1.4E-22 3E-27 175.4 16.7 151 1-151 173-323 (474)
3 PLN02612 phytoene desaturase 99.9 3E-21 6.5E-26 170.4 16.5 152 1-159 262-414 (567)
4 TIGR02731 phytoene_desat phyto 99.8 4.4E-19 9.6E-24 151.9 16.6 150 1-157 167-321 (453)
5 TIGR03467 HpnE squalene-associ 99.7 2.7E-16 5.7E-21 131.9 13.6 137 1-149 150-287 (419)
6 PRK07233 hypothetical protein; 99.6 5.7E-14 1.2E-18 118.6 14.0 139 1-151 150-291 (434)
7 PRK07208 hypothetical protein; 99.5 1.5E-12 3.3E-17 112.2 15.9 143 1-150 151-317 (479)
8 TIGR02733 desat_CrtD C-3',4' d 99.5 1.5E-12 3.4E-17 112.8 13.9 130 11-149 200-332 (492)
9 COG3349 Uncharacterized conser 99.5 2.9E-13 6.3E-18 116.8 9.0 147 1-150 168-316 (485)
10 PRK12416 protoporphyrinogen ox 99.4 5.8E-12 1.3E-16 108.3 12.3 133 1-149 164-313 (463)
11 TIGR02734 crtI_fam phytoene de 99.4 2.5E-11 5.5E-16 105.4 14.7 135 12-160 190-331 (502)
12 PRK11883 protoporphyrinogen ox 99.3 2.1E-11 4.5E-16 103.7 12.7 133 1-149 159-308 (451)
13 TIGR02730 carot_isom carotene 99.3 3E-11 6.5E-16 105.0 13.5 125 13-150 200-326 (493)
14 COG1232 HemY Protoporphyrinoge 99.3 4.6E-11 9.9E-16 102.9 11.0 131 1-148 153-300 (444)
15 TIGR00562 proto_IX_ox protopor 99.2 1.3E-10 2.9E-15 99.5 11.8 134 1-148 155-313 (462)
16 PLN02576 protoporphyrinogen ox 99.2 3E-10 6.6E-15 98.4 12.2 137 1-149 164-332 (496)
17 KOG4254 Phytoene desaturase [C 99.1 3.4E-10 7.4E-15 96.8 7.0 91 32-133 250-341 (561)
18 COG1233 Phytoene dehydrogenase 98.9 3.5E-09 7.6E-14 92.3 7.6 103 34-148 212-314 (487)
19 PF01593 Amino_oxidase: Flavin 98.9 3.4E-09 7.3E-14 87.6 6.1 136 2-152 163-305 (450)
20 PRK13977 myosin-cross-reactive 98.8 3.5E-08 7.6E-13 87.4 10.8 98 10-109 185-290 (576)
21 PTZ00363 rab-GDP dissociation 98.4 2.9E-06 6.3E-11 73.5 10.8 67 36-110 222-288 (443)
22 PLN02676 polyamine oxidase 98.4 2.2E-06 4.7E-11 75.0 9.2 99 42-150 220-326 (487)
23 COG2907 Predicted NAD/FAD-bind 98.2 1.6E-05 3.4E-10 66.8 9.2 130 1-144 170-303 (447)
24 PLN02568 polyamine oxidase 98.1 2.9E-05 6.4E-10 68.8 10.6 96 41-149 237-339 (539)
25 PLN02529 lysine-specific histo 98.0 8E-05 1.7E-09 68.2 11.5 93 39-149 350-446 (738)
26 PF01266 DAO: FAD dependent ox 97.9 3E-05 6.6E-10 63.0 6.9 57 47-112 147-203 (358)
27 PLN02328 lysine-specific histo 97.9 0.00012 2.5E-09 67.7 10.7 95 38-150 429-527 (808)
28 PLN02268 probable polyamine ox 97.9 0.00014 3E-09 62.1 10.2 81 60-149 209-291 (435)
29 PF06100 Strep_67kDa_ant: Stre 97.8 0.00025 5.4E-09 62.0 11.3 104 5-109 161-271 (500)
30 PLN03000 amine oxidase 97.8 0.00021 4.6E-09 66.4 11.2 94 40-151 375-472 (881)
31 KOG0029 Amine oxidase [Seconda 97.7 0.00018 3.9E-09 63.3 9.0 131 2-151 178-312 (501)
32 COG2509 Uncharacterized FAD-de 97.7 0.00014 2.9E-09 62.9 7.0 56 47-110 173-228 (486)
33 PLN02976 amine oxidase 97.6 0.00043 9.4E-09 67.2 9.9 98 41-151 931-1038(1713)
34 TIGR02352 thiamin_ThiO glycine 97.5 0.00035 7.7E-09 56.9 7.6 57 47-112 137-193 (337)
35 PF03486 HI0933_like: HI0933-l 97.4 0.0004 8.8E-09 59.7 6.7 63 39-109 101-163 (409)
36 COG0579 Predicted dehydrogenas 97.4 0.0011 2.4E-08 57.3 9.1 62 48-117 154-218 (429)
37 COG2081 Predicted flavoprotein 97.4 0.00057 1.2E-08 58.3 6.8 61 40-109 104-164 (408)
38 COG1231 Monoamine oxidase [Ami 97.3 0.0011 2.4E-08 57.3 8.4 98 43-154 206-304 (450)
39 TIGR03378 glycerol3P_GlpB glyc 97.3 0.0015 3.2E-08 56.4 8.7 57 47-111 263-321 (419)
40 PRK00711 D-amino acid dehydrog 97.1 0.0019 4.1E-08 54.6 7.6 56 48-112 202-257 (416)
41 PF00890 FAD_binding_2: FAD bi 97.1 0.0015 3.3E-08 55.3 7.0 58 47-109 141-200 (417)
42 PF00996 GDI: GDP dissociation 97.1 0.0044 9.5E-08 53.8 9.8 81 18-107 201-284 (438)
43 KOG0685 Flavin-containing amin 97.0 0.0025 5.4E-08 55.5 6.8 83 62-153 244-330 (498)
44 KOG1276 Protoporphyrinogen oxi 96.9 0.0038 8.3E-08 53.9 7.7 137 3-148 176-343 (491)
45 PRK06134 putative FAD-binding 96.9 0.0043 9.3E-08 55.5 8.4 58 47-110 217-276 (581)
46 TIGR03377 glycerol3P_GlpA glyc 96.9 0.0047 1E-07 54.3 8.3 61 47-112 128-190 (516)
47 PRK07121 hypothetical protein; 96.8 0.0062 1.3E-07 53.1 8.3 60 47-110 177-237 (492)
48 PRK08274 tricarballylate dehyd 96.8 0.0062 1.3E-07 52.6 8.1 58 47-109 131-189 (466)
49 PRK12844 3-ketosteroid-delta-1 96.8 0.0056 1.2E-07 54.5 7.9 59 46-109 207-266 (557)
50 PRK11101 glpA sn-glycerol-3-ph 96.8 0.0082 1.8E-07 53.3 8.9 61 47-112 149-211 (546)
51 PRK12835 3-ketosteroid-delta-1 96.7 0.0066 1.4E-07 54.4 8.1 60 46-109 212-272 (584)
52 PRK07843 3-ketosteroid-delta-1 96.7 0.0073 1.6E-07 53.7 8.0 60 45-109 206-266 (557)
53 COG1252 Ndh NADH dehydrogenase 96.7 0.0036 7.8E-08 53.8 5.8 61 45-118 207-271 (405)
54 TIGR03197 MnmC_Cterm tRNA U-34 96.7 0.0037 8E-08 52.5 5.6 56 47-112 135-190 (381)
55 TIGR01813 flavo_cyto_c flavocy 96.6 0.011 2.3E-07 50.7 8.0 58 48-110 131-190 (439)
56 PRK12845 3-ketosteroid-delta-1 96.6 0.01 2.2E-07 53.1 7.9 58 47-109 217-275 (564)
57 PRK12843 putative FAD-binding 96.6 0.0099 2.2E-07 53.1 7.8 59 47-110 221-280 (578)
58 PRK06481 fumarate reductase fl 96.5 0.012 2.7E-07 51.7 8.1 58 47-109 190-248 (506)
59 TIGR02485 CobZ_N-term precorri 96.5 0.012 2.5E-07 50.5 7.8 57 48-109 124-180 (432)
60 PRK12842 putative succinate de 96.5 0.013 2.7E-07 52.4 8.1 57 47-109 214-272 (574)
61 PRK06175 L-aspartate oxidase; 96.5 0.022 4.7E-07 49.2 9.3 60 46-110 127-187 (433)
62 PRK05329 anaerobic glycerol-3- 96.5 0.014 3.1E-07 50.4 8.0 63 48-116 260-322 (422)
63 PTZ00383 malate:quinone oxidor 96.4 0.013 2.8E-07 51.7 7.6 57 47-112 211-273 (497)
64 TIGR03862 flavo_PP4765 unchara 96.3 0.012 2.6E-07 50.1 6.8 63 39-111 78-140 (376)
65 TIGR01816 sdhA_forward succina 96.3 0.027 5.8E-07 50.3 9.2 59 46-109 118-178 (565)
66 TIGR01373 soxB sarcosine oxida 96.3 0.019 4.2E-07 48.4 7.9 56 48-111 184-239 (407)
67 PRK11728 hydroxyglutarate oxid 96.3 0.016 3.4E-07 48.9 7.4 61 47-117 149-211 (393)
68 TIGR01320 mal_quin_oxido malat 96.3 0.021 4.6E-07 50.0 8.1 61 47-112 178-240 (483)
69 PF00732 GMC_oxred_N: GMC oxid 96.3 0.019 4.2E-07 46.2 7.3 63 51-116 197-262 (296)
70 PRK09078 sdhA succinate dehydr 96.2 0.03 6.5E-07 50.3 9.1 60 46-109 148-209 (598)
71 PF13738 Pyr_redox_3: Pyridine 96.2 0.011 2.4E-07 44.8 5.5 56 46-110 81-136 (203)
72 PF00070 Pyr_redox: Pyridine n 96.2 0.018 3.8E-07 37.8 5.8 41 45-91 38-78 (80)
73 PRK05675 sdhA succinate dehydr 96.2 0.037 8E-07 49.5 9.4 61 46-110 125-187 (570)
74 PRK07573 sdhA succinate dehydr 96.2 0.045 9.7E-07 49.7 9.9 54 51-109 174-229 (640)
75 PLN02464 glycerol-3-phosphate 96.2 0.026 5.6E-07 51.1 8.2 67 47-117 232-303 (627)
76 PRK12839 hypothetical protein; 96.1 0.027 5.9E-07 50.4 8.1 58 47-109 214-273 (572)
77 TIGR01812 sdhA_frdA_Gneg succi 96.1 0.04 8.8E-07 48.9 9.2 60 47-111 129-190 (566)
78 TIGR01377 soxA_mon sarcosine o 96.1 0.021 4.7E-07 47.4 7.1 54 48-111 146-199 (380)
79 KOG1336 Monodehydroascorbate/f 96.1 0.012 2.6E-07 51.3 5.5 68 44-118 252-319 (478)
80 TIGR00275 flavoprotein, HI0933 96.1 0.028 6E-07 48.0 7.7 61 41-111 99-159 (400)
81 PRK12837 3-ketosteroid-delta-1 96.1 0.031 6.7E-07 49.2 8.1 57 48-109 174-232 (513)
82 TIGR02374 nitri_red_nirB nitri 96.1 0.018 3.8E-07 53.4 6.8 57 46-111 181-237 (785)
83 PRK04965 NADH:flavorubredoxin 96.0 0.031 6.8E-07 46.9 7.4 56 46-110 182-237 (377)
84 TIGR03329 Phn_aa_oxid putative 96.0 0.023 5E-07 49.2 6.7 54 47-111 183-236 (460)
85 PRK14989 nitrite reductase sub 95.9 0.025 5.5E-07 52.9 7.3 59 46-111 186-244 (847)
86 PTZ00318 NADH dehydrogenase-li 95.9 0.024 5.1E-07 48.6 6.5 53 45-110 226-278 (424)
87 PRK06452 sdhA succinate dehydr 95.9 0.071 1.5E-06 47.6 9.6 60 46-110 135-196 (566)
88 PRK05945 sdhA succinate dehydr 95.8 0.072 1.6E-06 47.6 9.6 61 46-111 134-196 (575)
89 TIGR01811 sdhA_Bsu succinate d 95.8 0.069 1.5E-06 48.1 9.5 60 46-109 128-193 (603)
90 PRK06116 glutathione reductase 95.8 0.037 8.1E-07 47.6 7.5 57 46-110 207-263 (450)
91 PRK04176 ribulose-1,5-biphosph 95.8 0.039 8.5E-07 44.4 7.0 61 47-111 104-172 (257)
92 PRK12409 D-amino acid dehydrog 95.8 0.045 9.7E-07 46.3 7.6 59 48-112 198-258 (410)
93 PRK05257 malate:quinone oxidor 95.8 0.051 1.1E-06 47.8 8.1 60 48-112 184-246 (494)
94 PRK07057 sdhA succinate dehydr 95.7 0.084 1.8E-06 47.4 9.4 60 47-110 148-209 (591)
95 PRK09564 coenzyme A disulfide 95.7 0.042 9.1E-07 47.0 7.1 57 45-111 189-245 (444)
96 PTZ00139 Succinate dehydrogena 95.6 0.089 1.9E-06 47.5 9.4 59 47-109 166-226 (617)
97 PRK06847 hypothetical protein; 95.6 0.048 1E-06 45.3 7.2 63 48-119 108-172 (375)
98 PRK08275 putative oxidoreducta 95.6 0.069 1.5E-06 47.5 8.4 61 47-111 137-199 (554)
99 TIGR01423 trypano_reduc trypan 95.6 0.05 1.1E-06 47.7 7.4 59 45-111 229-287 (486)
100 PRK11259 solA N-methyltryptoph 95.5 0.05 1.1E-06 45.2 6.9 56 47-112 149-204 (376)
101 PF01134 GIDA: Glucose inhibit 95.5 0.047 1E-06 46.9 6.7 55 47-110 95-150 (392)
102 PRK06263 sdhA succinate dehydr 95.5 0.071 1.5E-06 47.3 8.1 61 46-110 133-195 (543)
103 TIGR02032 GG-red-SF geranylger 95.5 0.076 1.6E-06 42.1 7.7 62 48-117 92-154 (295)
104 TIGR01350 lipoamide_DH dihydro 95.4 0.073 1.6E-06 45.8 7.8 57 46-111 210-268 (461)
105 TIGR00551 nadB L-aspartate oxi 95.4 0.11 2.5E-06 45.3 9.1 60 47-111 128-188 (488)
106 COG3380 Predicted NAD/FAD-depe 95.4 0.0052 1.1E-07 50.4 0.6 90 52-150 109-200 (331)
107 PRK08958 sdhA succinate dehydr 95.4 0.088 1.9E-06 47.3 8.5 61 46-110 142-204 (588)
108 PRK08773 2-octaprenyl-3-methyl 95.4 0.056 1.2E-06 45.4 6.9 61 48-117 114-175 (392)
109 PRK06416 dihydrolipoamide dehy 95.4 0.068 1.5E-06 46.1 7.6 57 46-111 212-271 (462)
110 PRK10157 putative oxidoreducta 95.4 0.057 1.2E-06 46.4 7.0 55 49-112 110-164 (428)
111 PLN00128 Succinate dehydrogena 95.4 0.12 2.6E-06 46.9 9.2 60 46-109 186-247 (635)
112 PRK10015 oxidoreductase; Provi 95.3 0.084 1.8E-06 45.5 7.8 55 49-112 110-164 (429)
113 PRK07333 2-octaprenyl-6-methox 95.3 0.069 1.5E-06 44.8 7.2 62 48-118 112-174 (403)
114 KOG2820 FAD-dependent oxidored 95.3 0.068 1.5E-06 45.1 6.9 66 47-119 153-218 (399)
115 TIGR02053 MerA mercuric reduct 95.3 0.085 1.8E-06 45.6 7.8 60 46-111 206-265 (463)
116 PRK01747 mnmC bifunctional tRN 95.3 0.04 8.6E-07 50.0 6.0 56 47-112 408-463 (662)
117 PRK07512 L-aspartate oxidase; 95.3 0.063 1.4E-06 47.3 7.1 58 47-110 136-195 (513)
118 PRK09754 phenylpropionate diox 95.3 0.073 1.6E-06 45.1 7.1 54 48-111 187-240 (396)
119 TIGR01421 gluta_reduc_1 glutat 95.2 0.084 1.8E-06 45.7 7.6 59 45-111 205-264 (450)
120 TIGR03385 CoA_CoA_reduc CoA-di 95.2 0.068 1.5E-06 45.6 6.9 54 47-111 179-232 (427)
121 PRK05249 soluble pyridine nucl 95.2 0.079 1.7E-06 45.6 7.2 58 45-111 214-271 (461)
122 PLN02507 glutathione reductase 95.2 0.086 1.9E-06 46.3 7.5 58 45-111 242-299 (499)
123 COG0578 GlpA Glycerol-3-phosph 95.1 0.14 3E-06 45.6 8.7 100 37-150 153-257 (532)
124 PRK07804 L-aspartate oxidase; 95.1 0.1 2.2E-06 46.4 8.0 61 47-111 144-209 (541)
125 PRK07045 putative monooxygenas 95.1 0.26 5.5E-06 41.4 10.1 60 49-115 108-169 (388)
126 PRK06370 mercuric reductase; V 95.1 0.12 2.5E-06 44.8 8.1 59 47-111 212-270 (463)
127 PRK08205 sdhA succinate dehydr 95.1 0.13 2.8E-06 46.1 8.5 63 47-111 140-205 (583)
128 PRK07395 L-aspartate oxidase; 95.1 0.12 2.6E-06 46.2 8.1 60 46-110 133-195 (553)
129 PRK12266 glpD glycerol-3-phosp 95.0 0.12 2.5E-06 45.6 7.8 60 47-112 155-216 (508)
130 PRK06115 dihydrolipoamide dehy 95.0 0.13 2.8E-06 44.7 8.0 60 46-111 214-275 (466)
131 PRK05714 2-octaprenyl-3-methyl 94.9 0.11 2.4E-06 43.9 7.3 63 48-119 113-176 (405)
132 PRK07845 flavoprotein disulfid 94.9 0.12 2.6E-06 44.8 7.5 56 47-111 218-273 (466)
133 TIGR01424 gluta_reduc_2 glutat 94.8 0.11 2.4E-06 44.7 7.2 57 46-111 206-262 (446)
134 PRK07818 dihydrolipoamide dehy 94.8 0.15 3.2E-06 44.2 7.9 59 47-111 213-272 (466)
135 PRK13369 glycerol-3-phosphate 94.8 0.12 2.6E-06 45.3 7.4 58 47-111 155-214 (502)
136 PRK08401 L-aspartate oxidase; 94.8 0.17 3.8E-06 44.0 8.2 56 46-111 119-174 (466)
137 PRK05976 dihydrolipoamide dehy 94.7 0.14 3.1E-06 44.4 7.6 59 46-111 220-280 (472)
138 PRK06854 adenylylsulfate reduc 94.7 0.17 3.6E-06 45.7 8.2 59 48-111 133-194 (608)
139 PRK08626 fumarate reductase fl 94.7 0.16 3.5E-06 46.3 8.2 58 48-110 159-218 (657)
140 TIGR01988 Ubi-OHases Ubiquinon 94.7 0.14 3.1E-06 42.4 7.2 61 48-117 107-169 (385)
141 TIGR01984 UbiH 2-polyprenyl-6- 94.7 0.11 2.5E-06 43.2 6.6 62 48-118 106-169 (382)
142 PRK07803 sdhA succinate dehydr 94.6 0.28 6E-06 44.4 9.4 60 46-110 137-211 (626)
143 TIGR00292 thiazole biosynthesi 94.5 0.21 4.6E-06 40.2 7.7 61 48-111 101-169 (254)
144 PRK12834 putative FAD-binding 94.5 0.17 3.7E-06 44.9 7.7 57 48-109 149-224 (549)
145 PRK10262 thioredoxin reductase 94.5 0.12 2.6E-06 42.3 6.3 59 48-111 186-247 (321)
146 PRK13339 malate:quinone oxidor 94.5 0.18 4E-06 44.5 7.8 60 48-112 185-247 (497)
147 TIGR03169 Nterm_to_SelD pyridi 94.5 0.11 2.4E-06 43.1 6.1 52 47-111 191-242 (364)
148 PF04820 Trp_halogenase: Trypt 94.4 0.15 3.3E-06 44.3 7.1 58 47-112 154-211 (454)
149 PRK06069 sdhA succinate dehydr 94.4 0.33 7.1E-06 43.4 9.3 59 48-111 138-199 (577)
150 PF06039 Mqo: Malate:quinone o 94.4 0.21 4.6E-06 43.8 7.8 63 47-114 181-246 (488)
151 PRK06834 hypothetical protein; 94.4 0.15 3.2E-06 44.7 7.0 62 48-118 101-163 (488)
152 COG1251 NirB NAD(P)H-nitrite r 94.4 0.042 9.1E-07 50.4 3.5 51 51-110 191-241 (793)
153 PRK06185 hypothetical protein; 94.3 0.32 6.9E-06 40.9 8.7 65 48-118 109-176 (407)
154 PRK06184 hypothetical protein; 94.3 0.29 6.4E-06 42.7 8.6 64 49-118 111-175 (502)
155 TIGR01292 TRX_reduct thioredox 94.3 0.2 4.4E-06 39.8 7.0 55 47-111 57-111 (300)
156 PRK06912 acoL dihydrolipoamide 94.2 0.22 4.8E-06 43.1 7.7 57 47-111 211-267 (458)
157 TIGR01810 betA choline dehydro 94.2 0.088 1.9E-06 46.4 5.1 48 58-110 205-253 (532)
158 PRK14694 putative mercuric red 94.2 0.19 4.2E-06 43.6 7.2 56 46-111 217-272 (468)
159 PRK06327 dihydrolipoamide dehy 94.1 0.24 5.2E-06 43.1 7.6 58 47-111 224-283 (475)
160 PTZ00052 thioredoxin reductase 94.0 0.22 4.9E-06 43.7 7.3 58 45-111 220-277 (499)
161 TIGR01316 gltA glutamate synth 94.0 1.1 2.3E-05 38.9 11.4 56 51-110 313-385 (449)
162 PTZ00058 glutathione reductase 94.0 0.25 5.5E-06 44.2 7.7 60 45-111 276-335 (561)
163 TIGR01292 TRX_reduct thioredox 93.9 0.3 6.5E-06 38.9 7.4 57 49-111 178-237 (300)
164 KOG1335 Dihydrolipoamide dehyd 93.9 0.25 5.5E-06 42.6 7.1 65 41-110 246-312 (506)
165 PRK07251 pyridine nucleotide-d 93.9 0.31 6.7E-06 41.8 7.8 54 47-110 198-251 (438)
166 TIGR02462 pyranose_ox pyranose 93.8 0.26 5.7E-06 44.0 7.4 68 48-118 215-286 (544)
167 PF01494 FAD_binding_3: FAD bi 93.8 0.24 5.3E-06 40.0 6.7 66 48-119 112-180 (356)
168 PRK07190 hypothetical protein; 93.7 0.32 6.9E-06 42.7 7.8 61 49-118 111-172 (487)
169 PRK11749 dihydropyrimidine deh 93.7 0.36 7.8E-06 41.7 8.0 56 51-111 315-386 (457)
170 PRK09077 L-aspartate oxidase; 93.7 0.49 1.1E-05 42.0 8.9 62 47-110 138-205 (536)
171 PF13454 NAD_binding_9: FAD-NA 93.7 0.16 3.5E-06 37.5 5.0 93 8-109 50-154 (156)
172 TIGR03364 HpnW_proposed FAD de 93.6 0.17 3.8E-06 41.9 5.8 51 48-112 146-197 (365)
173 PRK13512 coenzyme A disulfide 93.6 0.21 4.5E-06 43.0 6.3 52 46-110 188-239 (438)
174 TIGR01372 soxA sarcosine oxida 93.6 0.72 1.6E-05 44.0 10.3 58 48-111 352-410 (985)
175 PRK08850 2-octaprenyl-6-methox 93.6 0.6 1.3E-05 39.5 9.0 61 49-118 113-175 (405)
176 PRK08071 L-aspartate oxidase; 93.6 0.22 4.8E-06 43.9 6.5 56 48-110 131-188 (510)
177 PRK07588 hypothetical protein; 93.5 0.23 4.9E-06 41.7 6.3 58 49-116 105-163 (391)
178 PRK14727 putative mercuric red 93.5 0.28 6.2E-06 42.7 7.0 56 46-111 227-282 (479)
179 PRK08010 pyridine nucleotide-d 93.5 0.29 6.3E-06 42.0 7.0 55 47-111 199-253 (441)
180 TIGR01438 TGR thioredoxin and 93.5 0.32 7E-06 42.6 7.4 61 45-111 218-278 (484)
181 PRK08020 ubiF 2-octaprenyl-3-m 93.5 0.34 7.3E-06 40.6 7.2 61 49-118 114-176 (391)
182 COG0654 UbiH 2-polyprenyl-6-me 93.4 1.1 2.3E-05 37.8 10.2 63 48-118 105-169 (387)
183 PRK12810 gltD glutamate syntha 93.4 0.39 8.4E-06 41.8 7.6 53 53-110 335-398 (471)
184 PRK08641 sdhA succinate dehydr 93.3 0.48 1E-05 42.6 8.4 61 46-110 132-198 (589)
185 PRK08163 salicylate hydroxylas 93.3 0.39 8.4E-06 40.2 7.4 55 49-112 111-166 (396)
186 PF12831 FAD_oxidored: FAD dep 93.3 0.024 5.2E-07 48.8 0.0 66 48-118 91-156 (428)
187 COG1249 Lpd Pyruvate/2-oxoglut 93.2 0.38 8.1E-06 42.1 7.3 63 45-116 212-277 (454)
188 TIGR01318 gltD_gamma_fam gluta 93.2 0.55 1.2E-05 40.9 8.3 56 52-111 325-397 (467)
189 KOG1439 RAB proteins geranylge 93.2 0.58 1.2E-05 40.4 8.0 66 35-109 221-286 (440)
190 PRK12769 putative oxidoreducta 93.1 0.49 1.1E-05 43.0 8.2 57 51-111 510-583 (654)
191 PRK09231 fumarate reductase fl 93.1 0.75 1.6E-05 41.3 9.3 59 47-110 133-194 (582)
192 TIGR01176 fum_red_Fp fumarate 93.1 0.83 1.8E-05 41.0 9.5 60 46-110 131-193 (580)
193 TIGR03140 AhpF alkyl hydropero 92.9 0.43 9.3E-06 42.1 7.4 56 47-111 267-322 (515)
194 PRK13748 putative mercuric red 92.8 0.42 9E-06 42.3 7.1 56 46-111 309-364 (561)
195 PLN02815 L-aspartate oxidase 92.8 0.65 1.4E-05 41.9 8.4 62 47-109 155-219 (594)
196 COG0446 HcaD Uncharacterized N 92.7 0.41 8.9E-06 39.7 6.7 56 47-110 178-235 (415)
197 COG0665 DadA Glycine/D-amino a 92.7 0.51 1.1E-05 39.1 7.2 55 48-112 157-212 (387)
198 PRK12831 putative oxidoreducta 92.7 0.57 1.2E-05 40.8 7.8 53 55-111 326-395 (464)
199 PLN02697 lycopene epsilon cycl 92.7 0.45 9.8E-06 42.4 7.2 56 48-112 193-248 (529)
200 PLN02546 glutathione reductase 92.7 0.48 1E-05 42.5 7.4 59 45-111 291-349 (558)
201 PRK07494 2-octaprenyl-6-methox 92.7 1.1 2.3E-05 37.5 9.1 62 48-118 112-174 (388)
202 PTZ00306 NADH-dependent fumara 92.6 0.52 1.1E-05 45.7 8.0 60 48-109 545-617 (1167)
203 PRK09897 hypothetical protein; 92.6 0.6 1.3E-05 41.6 7.9 62 41-110 98-164 (534)
204 PRK15317 alkyl hydroperoxide r 92.4 0.59 1.3E-05 41.2 7.5 56 47-111 266-321 (517)
205 PRK05192 tRNA uridine 5-carbox 92.2 0.44 9.6E-06 43.2 6.6 53 49-110 102-155 (618)
206 PRK07608 ubiquinone biosynthes 92.2 0.48 1E-05 39.5 6.5 60 48-117 112-173 (388)
207 COG0644 FixC Dehydrogenases (f 92.0 0.83 1.8E-05 38.7 7.8 60 48-115 96-156 (396)
208 PF07156 Prenylcys_lyase: Pren 92.0 0.51 1.1E-05 40.2 6.4 69 35-112 118-187 (368)
209 PRK08013 oxidoreductase; Provi 92.0 0.53 1.1E-05 39.8 6.6 61 49-118 113-175 (400)
210 PRK06475 salicylate hydroxylas 92.0 0.81 1.8E-05 38.6 7.6 65 48-118 108-174 (400)
211 PRK05732 2-octaprenyl-6-methox 91.9 0.65 1.4E-05 38.7 7.0 59 50-117 115-175 (395)
212 PRK08243 4-hydroxybenzoate 3-m 91.9 0.67 1.5E-05 39.0 7.0 63 49-119 105-171 (392)
213 PRK07364 2-octaprenyl-6-methox 91.8 0.6 1.3E-05 39.3 6.7 64 49-118 123-188 (415)
214 TIGR00136 gidA glucose-inhibit 91.8 0.57 1.2E-05 42.5 6.7 56 48-111 97-153 (617)
215 TIGR01790 carotene-cycl lycope 91.6 0.7 1.5E-05 38.6 6.8 57 47-112 85-141 (388)
216 PRK09126 hypothetical protein; 91.5 0.79 1.7E-05 38.3 7.0 60 49-117 112-173 (392)
217 PRK08244 hypothetical protein; 91.5 1.1 2.4E-05 39.0 8.1 63 49-118 102-166 (493)
218 PRK08132 FAD-dependent oxidore 91.5 2.8 6.2E-05 37.0 10.8 61 51-118 129-192 (547)
219 TIGR03140 AhpF alkyl hydropero 91.5 0.81 1.8E-05 40.3 7.3 55 51-110 391-448 (515)
220 KOG2844 Dimethylglycine dehydr 91.4 0.37 7.9E-06 44.2 5.0 57 47-112 187-243 (856)
221 PRK12770 putative glutamate sy 91.3 0.96 2.1E-05 37.6 7.3 55 51-111 214-285 (352)
222 PLN02463 lycopene beta cyclase 91.2 0.76 1.6E-05 40.0 6.7 55 47-111 114-168 (447)
223 PRK12809 putative oxidoreducta 90.8 1.1 2.4E-05 40.6 7.7 52 56-111 498-566 (639)
224 PRK07846 mycothione reductase; 90.8 0.97 2.1E-05 39.1 7.0 55 47-111 207-261 (451)
225 PRK02106 choline dehydrogenase 90.4 0.39 8.5E-06 42.7 4.3 47 58-110 212-260 (560)
226 TIGR02061 aprA adenosine phosp 90.2 1.9 4.1E-05 39.1 8.6 62 48-111 127-190 (614)
227 KOG1346 Programmed cell death 90.0 0.3 6.5E-06 42.7 3.1 58 45-111 391-448 (659)
228 PRK08849 2-octaprenyl-3-methyl 90.0 1.1 2.3E-05 37.7 6.5 57 52-117 115-173 (384)
229 TIGR03452 mycothione_red mycot 89.8 1.4 3E-05 38.1 7.2 56 46-111 209-264 (452)
230 PRK06126 hypothetical protein; 89.7 2 4.3E-05 37.9 8.2 64 49-118 128-195 (545)
231 PRK06996 hypothetical protein; 89.7 1.2 2.7E-05 37.5 6.7 55 48-109 116-171 (398)
232 PRK12778 putative bifunctional 89.4 1.7 3.7E-05 40.1 7.8 53 55-111 616-685 (752)
233 PRK07538 hypothetical protein; 89.3 1.5 3.3E-05 37.1 6.9 65 49-117 104-171 (413)
234 PRK12775 putative trifunctiona 89.2 1.7 3.7E-05 41.7 7.8 53 55-111 617-685 (1006)
235 TIGR01989 COQ6 Ubiquinone bios 89.2 1.4 3.1E-05 37.8 6.7 63 49-118 119-190 (437)
236 TIGR02374 nitri_red_nirB nitri 89.1 0.73 1.6E-05 42.9 5.2 51 50-111 57-107 (785)
237 PRK06292 dihydrolipoamide dehy 88.9 1.7 3.7E-05 37.4 7.0 58 46-111 209-267 (460)
238 PF05834 Lycopene_cycl: Lycope 88.8 1.2 2.7E-05 37.5 6.0 55 47-111 87-141 (374)
239 PRK15317 alkyl hydroperoxide r 88.7 2.1 4.5E-05 37.7 7.6 56 51-111 390-448 (517)
240 PRK05868 hypothetical protein; 88.7 1.4 3.1E-05 37.0 6.3 50 59-117 116-166 (372)
241 COG3075 GlpB Anaerobic glycero 88.7 0.93 2E-05 38.5 5.0 75 37-119 245-324 (421)
242 PLN02661 Putative thiazole syn 88.4 2.1 4.6E-05 36.4 7.1 57 48-109 173-241 (357)
243 PRK13984 putative oxidoreducta 88.4 2 4.3E-05 38.6 7.3 50 57-111 472-537 (604)
244 PRK11445 putative oxidoreducta 88.3 7.6 0.00016 32.2 10.4 58 51-117 103-163 (351)
245 PF07992 Pyr_redox_2: Pyridine 88.2 1.4 3.1E-05 32.8 5.5 55 52-111 63-121 (201)
246 PRK06183 mhpA 3-(3-hydroxyphen 88.1 2.5 5.3E-05 37.4 7.7 61 51-118 117-181 (538)
247 PRK12771 putative glutamate sy 87.9 2.8 6.1E-05 37.3 7.9 52 55-111 313-379 (564)
248 PRK09754 phenylpropionate diox 87.5 2 4.3E-05 36.3 6.5 46 55-111 66-111 (396)
249 TIGR03385 CoA_CoA_reduc CoA-di 87.0 2 4.4E-05 36.5 6.3 50 54-111 51-102 (427)
250 TIGR03169 Nterm_to_SelD pyridi 87.0 1.1 2.5E-05 37.1 4.7 52 48-111 55-106 (364)
251 PRK06617 2-octaprenyl-6-methox 87.0 2.6 5.7E-05 35.2 6.9 60 48-117 105-166 (374)
252 PRK09564 coenzyme A disulfide 87.0 2.9 6.3E-05 35.7 7.3 52 52-111 61-114 (444)
253 PRK06467 dihydrolipoamide dehy 86.9 3.2 6.8E-05 36.1 7.5 60 45-111 213-273 (471)
254 PRK07236 hypothetical protein; 86.7 2.1 4.6E-05 35.9 6.2 50 61-119 112-163 (386)
255 PTZ00153 lipoamide dehydrogena 86.6 3.4 7.3E-05 37.9 7.8 62 46-111 352-426 (659)
256 TIGR03219 salicylate_mono sali 86.3 2 4.3E-05 36.4 5.8 57 49-116 107-164 (414)
257 PRK04965 NADH:flavorubredoxin 86.1 2.6 5.6E-05 35.3 6.4 47 53-111 64-110 (377)
258 PRK13800 putative oxidoreducta 85.7 4.1 8.8E-05 38.6 8.1 60 46-110 138-203 (897)
259 KOG0404 Thioredoxin reductase 85.5 1.3 2.9E-05 35.7 4.1 72 38-120 61-132 (322)
260 PLN02172 flavin-containing mon 85.4 3.4 7.4E-05 36.1 7.0 58 47-111 111-172 (461)
261 PRK14989 nitrite reductase sub 85.1 1.6 3.4E-05 41.1 5.0 52 49-111 61-112 (847)
262 PRK06753 hypothetical protein; 85.0 3 6.5E-05 34.5 6.2 48 61-117 110-158 (373)
263 KOG0405 Pyridine nucleotide-di 84.3 2.4 5.2E-05 36.4 5.2 59 44-110 227-285 (478)
264 TIGR02360 pbenz_hydroxyl 4-hyd 83.1 6.3 0.00014 33.3 7.5 64 49-119 105-171 (390)
265 COG0445 GidA Flavin-dependent 81.7 1.7 3.6E-05 39.2 3.5 55 48-109 101-155 (621)
266 COG2303 BetA Choline dehydroge 81.6 3.8 8.1E-05 36.6 5.8 50 56-110 212-264 (542)
267 PRK12779 putative bifunctional 80.6 8.7 0.00019 36.7 8.1 52 57-111 494-561 (944)
268 COG1635 THI4 Ribulose 1,5-bisp 79.7 9.3 0.0002 30.8 6.8 60 48-111 110-177 (262)
269 COG5044 MRS6 RAB proteins gera 79.5 4.3 9.3E-05 34.9 5.1 64 35-109 218-281 (434)
270 COG0492 TrxB Thioredoxin reduc 79.1 7.1 0.00015 32.3 6.3 63 39-112 53-115 (305)
271 PRK13512 coenzyme A disulfide 78.6 8.1 0.00018 33.2 6.7 49 55-111 66-116 (438)
272 PF13434 K_oxygenase: L-lysine 78.2 4.2 9.2E-05 34.1 4.8 62 44-110 270-339 (341)
273 TIGR00031 UDP-GALP_mutase UDP- 77.5 2.5 5.5E-05 36.1 3.2 87 11-114 160-249 (377)
274 TIGR02023 BchP-ChlP geranylger 77.4 11 0.00025 31.5 7.2 63 48-117 93-161 (388)
275 COG4716 Myosin-crossreactive a 77.2 4.4 9.6E-05 35.2 4.5 67 11-77 187-257 (587)
276 KOG2404 Fumarate reductase, fl 75.8 4.1 8.9E-05 34.7 3.9 57 48-110 140-204 (477)
277 PRK12814 putative NADPH-depend 74.7 17 0.00036 33.2 7.9 52 57-111 371-436 (652)
278 TIGR01317 GOGAT_sm_gam glutama 73.7 12 0.00027 32.7 6.7 53 54-110 343-412 (485)
279 PTZ00318 NADH dehydrogenase-li 72.9 11 0.00024 32.2 6.1 56 47-111 62-124 (424)
280 COG0029 NadB Aspartate oxidase 72.4 13 0.00028 33.1 6.3 68 37-109 123-193 (518)
281 PLN02785 Protein HOTHEAD 71.0 12 0.00025 33.9 6.0 56 53-110 226-288 (587)
282 TIGR03143 AhpF_homolog putativ 70.6 17 0.00037 32.4 6.9 54 47-111 60-113 (555)
283 PLN02985 squalene monooxygenas 70.4 26 0.00057 31.0 8.0 64 48-118 148-215 (514)
284 PTZ00367 squalene epoxidase; P 70.3 44 0.00095 30.2 9.4 66 49-117 133-225 (567)
285 KOG1336 Monodehydroascorbate/f 69.2 8.8 0.00019 33.9 4.6 53 47-110 127-179 (478)
286 PLN00093 geranylgeranyl diphos 69.0 24 0.00053 30.6 7.4 65 49-117 134-205 (450)
287 PF03197 FRD2: Bacteriophage F 68.4 18 0.00039 25.1 5.1 40 53-102 2-41 (102)
288 PF00743 FMO-like: Flavin-bind 68.2 12 0.00026 33.4 5.4 61 47-112 84-150 (531)
289 TIGR02028 ChlP geranylgeranyl 68.0 29 0.00064 29.4 7.6 65 49-117 95-166 (398)
290 PLN02927 antheraxanthin epoxid 67.7 13 0.00029 34.2 5.6 51 60-119 204-257 (668)
291 COG3486 IucD Lysine/ornithine 67.6 11 0.00023 32.9 4.7 46 61-111 292-339 (436)
292 PRK08294 phenol 2-monooxygenas 67.4 29 0.00063 31.6 7.8 67 49-118 143-217 (634)
293 TIGR01789 lycopene_cycl lycope 66.2 11 0.00024 31.7 4.6 38 61-111 100-137 (370)
294 COG3573 Predicted oxidoreducta 66.0 9.9 0.00021 32.7 4.1 57 48-109 150-225 (552)
295 TIGR03143 AhpF_homolog putativ 65.5 27 0.00059 31.1 7.1 54 51-110 182-244 (555)
296 PF13434 K_oxygenase: L-lysine 64.5 14 0.0003 31.0 4.8 64 45-110 93-157 (341)
297 COG1251 NirB NAD(P)H-nitrite r 63.7 13 0.00027 34.8 4.7 55 47-112 59-113 (793)
298 COG2072 TrkA Predicted flavopr 62.1 36 0.00078 29.5 7.1 56 49-111 84-143 (443)
299 COG0492 TrxB Thioredoxin reduc 60.3 23 0.00051 29.3 5.4 54 50-110 181-236 (305)
300 KOG4716 Thioredoxin reductase 59.6 13 0.00029 31.9 3.8 67 43-112 234-300 (503)
301 PRK09853 putative selenate red 59.5 32 0.0007 33.4 6.7 48 58-111 718-778 (1019)
302 PRK06567 putative bifunctional 57.9 35 0.00076 33.1 6.6 51 55-109 648-725 (1028)
303 TIGR01424 gluta_reduc_2 glutat 57.1 29 0.00062 29.9 5.6 51 48-111 91-141 (446)
304 KOG2415 Electron transfer flav 57.1 14 0.00029 32.7 3.5 68 47-118 183-264 (621)
305 PF01946 Thi4: Thi4 family; PD 55.5 41 0.00089 26.9 5.7 60 48-111 97-164 (230)
306 PRK07845 flavoprotein disulfid 54.9 39 0.00086 29.2 6.2 52 50-111 95-150 (466)
307 KOG2852 Possible oxidoreductas 54.8 26 0.00056 29.5 4.6 64 48-118 148-213 (380)
308 PRK06416 dihydrolipoamide dehy 52.1 41 0.0009 28.9 5.8 51 50-111 95-145 (462)
309 PRK10262 thioredoxin reductase 51.2 79 0.0017 25.6 7.1 53 48-111 64-116 (321)
310 PRK14181 bifunctional 5,10-met 48.5 47 0.001 27.4 5.3 77 17-111 135-211 (287)
311 TIGR01421 gluta_reduc_1 glutat 48.4 48 0.001 28.6 5.6 48 49-111 93-140 (450)
312 PLN02852 ferredoxin-NADP+ redu 46.9 95 0.0021 27.5 7.3 50 60-111 288-353 (491)
313 PRK06116 glutathione reductase 46.7 43 0.00094 28.7 5.1 48 49-111 95-142 (450)
314 PRK14180 bifunctional 5,10-met 46.5 73 0.0016 26.2 6.1 74 17-112 140-213 (282)
315 KOG2311 NAD/FAD-utilizing prot 46.2 28 0.00061 31.3 3.8 57 49-109 126-183 (679)
316 KOG0042 Glycerol-3-phosphate d 45.5 32 0.0007 31.3 4.1 101 35-149 211-316 (680)
317 PRK05976 dihydrolipoamide dehy 44.4 81 0.0018 27.3 6.5 54 51-111 96-153 (472)
318 PRK14185 bifunctional 5,10-met 44.0 59 0.0013 26.9 5.2 78 17-112 139-216 (293)
319 TIGR03315 Se_ygfK putative sel 43.5 1.2E+02 0.0025 29.7 7.7 47 58-111 716-775 (1012)
320 KOG1298 Squalene monooxygenase 43.5 98 0.0021 27.2 6.5 94 47-159 147-248 (509)
321 PLN02546 glutathione reductase 41.8 61 0.0013 29.2 5.4 49 48-111 179-227 (558)
322 PRK14189 bifunctional 5,10-met 40.0 94 0.002 25.6 5.8 73 17-111 140-212 (285)
323 PLN02507 glutathione reductase 38.8 92 0.002 27.4 6.0 47 53-111 130-178 (499)
324 PRK05249 soluble pyridine nucl 38.8 93 0.002 26.7 5.9 50 50-111 97-148 (461)
325 COG4635 HemG Flavodoxin [Energ 38.6 33 0.00072 26.1 2.7 83 42-148 10-94 (175)
326 PRK14166 bifunctional 5,10-met 37.1 1E+02 0.0022 25.4 5.5 74 17-112 139-212 (282)
327 COG1053 SdhA Succinate dehydro 37.0 78 0.0017 28.6 5.3 63 46-112 137-202 (562)
328 PRK06467 dihydrolipoamide dehy 36.5 1E+02 0.0022 26.7 5.9 48 52-111 98-147 (471)
329 PRK06327 dihydrolipoamide dehy 36.3 1.1E+02 0.0025 26.4 6.1 53 51-111 104-156 (475)
330 PRK14187 bifunctional 5,10-met 36.0 1.1E+02 0.0023 25.4 5.6 74 17-112 142-215 (294)
331 PRK14177 bifunctional 5,10-met 35.4 1.1E+02 0.0025 25.2 5.6 74 17-112 141-214 (284)
332 PRK14172 bifunctional 5,10-met 34.8 1.2E+02 0.0026 24.9 5.7 74 17-112 140-213 (278)
333 COG1445 FrwB Phosphotransferas 33.6 29 0.00063 25.0 1.6 52 50-116 21-73 (122)
334 PRK12779 putative bifunctional 33.5 44 0.00096 32.1 3.3 34 38-71 347-380 (944)
335 PRK14186 bifunctional 5,10-met 33.2 1.3E+02 0.0028 25.0 5.6 73 17-111 140-212 (297)
336 PF02006 DUF137: Protein of un 33.2 61 0.0013 24.8 3.4 50 47-109 43-98 (178)
337 PRK06370 mercuric reductase; V 33.1 1.1E+02 0.0024 26.3 5.5 45 52-111 99-144 (463)
338 PRK14184 bifunctional 5,10-met 32.1 93 0.002 25.7 4.6 77 17-111 139-215 (286)
339 PRK14176 bifunctional 5,10-met 31.9 1.3E+02 0.0028 24.8 5.4 73 17-111 146-218 (287)
340 PRK14173 bifunctional 5,10-met 30.9 1.4E+02 0.0031 24.6 5.5 73 17-111 137-209 (287)
341 KOG4405 GDP dissociation inhib 30.9 1.8E+02 0.0038 25.9 6.2 87 14-107 251-340 (547)
342 PRK14182 bifunctional 5,10-met 30.0 1.6E+02 0.0035 24.2 5.7 73 17-111 139-211 (282)
343 KOG2665 Predicted FAD-dependen 29.8 79 0.0017 27.1 3.8 59 48-111 197-256 (453)
344 cd01079 NAD_bind_m-THF_DH NAD 29.3 2.1E+02 0.0046 22.3 5.9 47 17-65 35-90 (197)
345 KOG3851 Sulfide:quinone oxidor 29.0 26 0.00057 29.9 0.9 34 68-112 112-145 (446)
346 COG1252 Ndh NADH dehydrogenase 28.9 91 0.002 27.1 4.2 54 47-112 57-111 (405)
347 PF15647 Tox-REase-3: Restrict 28.6 1.3E+02 0.0027 21.1 4.0 45 21-69 61-108 (109)
348 PRK14168 bifunctional 5,10-met 27.9 1.3E+02 0.0029 24.9 4.9 78 17-112 143-220 (297)
349 PF08973 TM1506: Domain of unk 27.8 34 0.00073 25.0 1.2 29 46-74 73-101 (134)
350 PF00975 Thioesterase: Thioest 27.6 71 0.0015 24.0 3.1 49 16-64 45-94 (229)
351 PLN02172 flavin-containing mon 27.5 61 0.0013 28.3 3.0 28 88-118 267-294 (461)
352 PRK12778 putative bifunctional 26.6 46 0.001 30.8 2.1 26 45-70 479-504 (752)
353 PRK14171 bifunctional 5,10-met 26.6 2E+02 0.0044 23.8 5.7 73 17-111 141-213 (288)
354 PF03460 NIR_SIR_ferr: Nitrite 26.6 33 0.00072 21.3 0.9 34 35-68 11-45 (69)
355 PF14542 Acetyltransf_CG: GCN5 26.5 50 0.0011 21.4 1.8 26 44-69 38-63 (78)
356 PRK08818 prephenate dehydrogen 26.3 66 0.0014 27.5 2.9 62 36-117 5-68 (370)
357 TIGR01372 soxA sarcosine oxida 26.0 2.8E+02 0.006 26.8 7.3 58 48-111 216-285 (985)
358 PRK09853 putative selenate red 25.5 1.4E+02 0.0029 29.3 5.0 28 48-76 590-617 (1019)
359 cd05212 NAD_bind_m-THF_DH_Cycl 25.3 2.6E+02 0.0057 20.3 5.6 72 18-111 11-82 (140)
360 COG0493 GltD NADPH-dependent g 25.1 71 0.0015 28.1 2.9 35 37-71 163-197 (457)
361 PRK14188 bifunctional 5,10-met 24.2 2.4E+02 0.0052 23.3 5.7 47 17-65 140-186 (296)
362 PRK14194 bifunctional 5,10-met 22.1 3E+02 0.0066 22.8 5.9 47 17-65 141-187 (301)
363 PLN02897 tetrahydrofolate dehy 21.2 2.4E+02 0.0052 24.0 5.2 75 16-112 195-269 (345)
364 PF02878 PGM_PMM_I: Phosphoglu 21.1 2.9E+02 0.0062 19.5 5.1 50 17-66 21-73 (137)
365 PRK07846 mycothione reductase; 21.0 2E+02 0.0043 24.9 4.9 41 57-111 99-139 (451)
366 PF02882 THF_DHG_CYH_C: Tetrah 20.6 3.5E+02 0.0076 20.2 5.6 73 18-112 19-91 (160)
367 PF10354 DUF2431: Domain of un 20.4 1.1E+02 0.0024 22.8 2.9 45 51-112 43-87 (166)
No 1
>PLN02487 zeta-carotene desaturase
Probab=99.93 E-value=2.1e-25 Score=196.52 Aligned_cols=152 Identities=85% Similarity=1.455 Sum_probs=131.8
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCC
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~ 80 (162)
||+|++.+++|.+++++||++++.+|..|..+..++++++++|++++.|+++++++|+++||+|+++++|++|+.+++++
T Consensus 249 l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~ 328 (569)
T PLN02487 249 MWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPD 328 (569)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCC
Confidence 69999999999999999999999999876656677899999999988899999999999999999999999999984211
Q ss_pred CcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCcc
Q 031284 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTEL 152 (162)
Q Consensus 81 ~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~ 152 (162)
|..+++++++.++++++.+.||+||+|+|++.+.+|+|+.+...+.+.++.+|+++||+++|||||++++..
T Consensus 329 g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~ 400 (569)
T PLN02487 329 GETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEM 400 (569)
T ss_pred CceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEeccccccc
Confidence 211378888743335667999999999999999999998766666788999999999999999999988753
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.90 E-value=1.4e-22 Score=175.41 Aligned_cols=151 Identities=71% Similarity=1.206 Sum_probs=127.2
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCC
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~ 80 (162)
||+|++.+++|.+++++||++++.+|+.|..+.+++.+++++|++++.+.++|.+.|+++||+|+++++|++|+.+++++
T Consensus 173 ~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~ 252 (474)
T TIGR02732 173 MWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSD 252 (474)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCC
Confidence 69999999999999999999999999987777888999999999999999999999999999999999999999864101
Q ss_pred CcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCc
Q 031284 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTE 151 (162)
Q Consensus 81 ~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~ 151 (162)
+..++++|++..+++++.+.||+||+|+|++.+.+|+|+.+...+....+.++++.|++++||+||++++.
T Consensus 253 ~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~ 323 (474)
T TIGR02732 253 GSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTE 323 (474)
T ss_pred CceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEecccccc
Confidence 20026777774211125689999999999999999999865445577889999999999999999987764
No 3
>PLN02612 phytoene desaturase
Probab=99.87 E-value=3e-21 Score=170.41 Aligned_cols=152 Identities=30% Similarity=0.532 Sum_probs=132.1
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCC
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~ 80 (162)
+|+||+.++.|.+|+++|+.+++..++.++.+.+++.+++++|++.+.++++|++.|+++|++|++|++|++|..+++
T Consensus 262 ~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-- 339 (567)
T PLN02612 262 VFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-- 339 (567)
T ss_pred HHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC--
Confidence 589999999999999999999999999887778889999999998788999999999999999999999999998753
Q ss_pred CcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccC-cccceeccc
Q 031284 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVT-ELQDLERSR 159 (162)
Q Consensus 81 ~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~-~~~~~~f~~ 159 (162)
+ +++++++. +|+++.||+||+|+|++.+..|+++.+...+++++++++.+.++++++++||+++. +.++.+|++
T Consensus 340 g--~v~~v~~~---~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~ 414 (567)
T PLN02612 340 G--TVKHFLLT---NGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSR 414 (567)
T ss_pred C--cEEEEEEC---CCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecC
Confidence 6 67788776 78889999999999999999999876555567888888999999999999999985 233444543
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.82 E-value=4.4e-19 Score=151.93 Aligned_cols=150 Identities=34% Similarity=0.571 Sum_probs=125.3
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCC
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~ 80 (162)
+|+|++.++.+.+|+++|+.+++..++.++.++.++..++.+|+..+.++++|.+.++++|++|++|++|++|+.+++
T Consensus 167 ~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-- 244 (453)
T TIGR02731 167 VFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-- 244 (453)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC--
Confidence 589999999999999999999999999877667778888888877778999999999999999999999999987653
Q ss_pred CcceEEEEEEEecCCce-----EEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCcccce
Q 031284 81 AETYVKGLAMSKATDKK-----VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDL 155 (162)
Q Consensus 81 ~~~~v~gv~~~~~~~g~-----~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~ 155 (162)
+ ++++|++. +|+ ++.||.||+|+|++.+.+|||+.....++.+++.++++.+++.++++|++++....++
T Consensus 245 ~--~v~~v~~~---~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~ 319 (453)
T TIGR02731 245 G--SVKHFVLA---DGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVDHL 319 (453)
T ss_pred C--CEEEEEEe---cCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCCce
Confidence 6 68888875 343 7899999999999999999986432345667788888889999999999998644333
Q ss_pred ec
Q 031284 156 ER 157 (162)
Q Consensus 156 ~f 157 (162)
.+
T Consensus 320 ~~ 321 (453)
T TIGR02731 320 LF 321 (453)
T ss_pred ee
Confidence 33
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.70 E-value=2.7e-16 Score=131.94 Aligned_cols=137 Identities=24% Similarity=0.306 Sum_probs=113.9
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHH-HHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCC
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFAL-FATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~-~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~ 79 (162)
||+|++.+..+.+|+++|+..++..++. +..+.....+.+++|+..+.+.++|++.|++.|++|++|++|++|..++
T Consensus 150 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-- 227 (419)
T TIGR03467 150 LWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-- 227 (419)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--
Confidence 5789999999999999999999988875 5555556678999999888788889999999999999999999999886
Q ss_pred CCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCccc
Q 031284 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (162)
Q Consensus 80 ~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~ 149 (162)
+ +++.+... +|+.+.||.||+|+|++.+.+|+|+. ...+.+.++++.++.++++.|++++
T Consensus 228 -~--~~~~~~~~---~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 228 -G--GIRALVLS---GGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAV 287 (419)
T ss_pred -C--cceEEEec---CCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCc
Confidence 3 44433223 57788999999999999999999862 2345677888888999999999987
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.57 E-value=5.7e-14 Score=118.63 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=110.9
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHH-hcc--ccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEecc
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFA-TKT--EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDK 77 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~-~~~--~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~ 77 (162)
||+|++....+.+++++|+.+++..+.... .+. ....+++++|+. +.++++|++.+++.|++|++|++|++|+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~ 228 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGTPVTSVVIDG 228 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC
Confidence 589999999999999999999887776432 111 133588899887 6699999999999999999999999999876
Q ss_pred CCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCc
Q 031284 78 AANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTE 151 (162)
Q Consensus 78 ~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~ 151 (162)
+ ++..+. . +++.++||+||+|+|++.+.+|+|+.. ....+.++++.+.+.+++++++++++.+
T Consensus 229 ---~--~~~~~~-~---~~~~~~ad~vI~a~p~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 291 (434)
T PRK07233 229 ---G--GVTGVE-V---DGEEEDFDAVISTAPPPILARLVPDLP--ADVLARLRRIDYQGVVCMVLKLRRPLTD 291 (434)
T ss_pred ---C--ceEEEE-e---CCceEECCEEEECCCHHHHHhhcCCCc--HHHHhhhcccCccceEEEEEEecCCCCC
Confidence 4 555553 3 577899999999999998888887532 2344567778888899999999998743
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.48 E-value=1.5e-12 Score=112.22 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=105.2
Q ss_pred ChhhHHhHhCCCCCccccHHHHH---------HHHHHHHhc----------c---ccceeeEeCCCCcccchHHHHHHHH
Q 031284 1 MWDPVAYALGFIDCDNISARCML---------TIFALFATK----------T---EASLLRMLKGSPDVYLSGPIRKYIT 58 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~---------~~l~~~~~~----------~---~~~~~~~~~g~~~~~l~~~l~~~l~ 58 (162)
+|+|++.+..+.+|++.|+.+++ .+++..... . ....+.+++|++. .|+++|++.++
T Consensus 151 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~-~l~~~L~~~l~ 229 (479)
T PRK07208 151 FFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPG-QLWETAAEKLE 229 (479)
T ss_pred HHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcc-hHHHHHHHHHH
Confidence 58999999999999999998754 233321111 0 1236788899985 59999999999
Q ss_pred HcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCC
Q 031284 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGV 136 (162)
Q Consensus 59 ~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~ 136 (162)
+.|++|++|++|++|..+++ + .+..+... +++| ..+.||+||+|+|++.+.+++++. ......+.++++++.
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~--~--~v~~~~~~-~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~~l~~~ 303 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGD--G--RIAVVVVN-DTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAAGLRYR 303 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCC--c--EEEEEEEE-cCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHhCCCcc
Confidence 99999999999999999863 4 34444332 2234 368899999999999887777632 122344556778888
Q ss_pred CEEEEEEEeCcccC
Q 031284 137 PVVTVQLRYNGWVT 150 (162)
Q Consensus 137 ~~~~v~l~~d~~~~ 150 (162)
++++++++++++..
T Consensus 304 ~~~~v~l~~~~~~~ 317 (479)
T PRK07208 304 DFITVGLLVKELNL 317 (479)
T ss_pred eeEEEEEEecCCCC
Confidence 89999999998753
No 8
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.45 E-value=1.5e-12 Score=112.78 Aligned_cols=130 Identities=18% Similarity=0.089 Sum_probs=92.9
Q ss_pred CCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 031284 11 FIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (162)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~ 90 (162)
..+|++.++...+.++.. ... .. ...++.|++ +.|+++|++.++++||+|++|++|++|..++ + ++.++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~-~~-G~~~~~GG~-~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~ 270 (492)
T TIGR02733 200 QEDADETAALYGATVLQM-AQA-PH-GLWHLHGSM-QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG---G--RAGWVVV 270 (492)
T ss_pred cCChhhhhHHHHHHHhhc-ccc-CC-CceeecCcH-HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC---C--eEEEEEE
Confidence 345667776665444332 111 11 134477777 4599999999999999999999999999986 5 6778877
Q ss_pred EecCC--ceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCC-EEEEEEEeCccc
Q 031284 91 SKATD--KKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVP-VVTVQLRYNGWV 149 (162)
Q Consensus 91 ~~~~~--g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~-~~~v~l~~d~~~ 149 (162)
..+++ ++.+.||+||+|+|++.+.+|+++......+.+++++++.++ .+++|+.++++.
T Consensus 271 ~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~ 332 (492)
T TIGR02733 271 VDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAA 332 (492)
T ss_pred ecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccc
Confidence 52111 267899999999999988888875333334566777888666 668999998854
No 9
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.9e-13 Score=116.78 Aligned_cols=147 Identities=41% Similarity=0.652 Sum_probs=127.2
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhcc-ccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEecc-C
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKT-EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDK-A 78 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~-~ 78 (162)
.|.|++++++|.+||++||+.+.+.+..|.... .++.+.+++|+..|.+..++.+++.++|++++.+.+|.+|..+. +
T Consensus 168 ~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~ 247 (485)
T COG3349 168 AFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGAR 247 (485)
T ss_pred HHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccc
Confidence 399999999999999999999999999987655 88899999999999999999999999999999999999999876 2
Q ss_pred CCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccC
Q 031284 79 ANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVT 150 (162)
Q Consensus 79 ~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~ 150 (162)
++. +++|+.+. ..--+...++.|+.+...+.+...+|..|.+...++++..+...|+.++++|+++...
T Consensus 248 ~~~--~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~ 316 (485)
T COG3349 248 GLA--KVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVT 316 (485)
T ss_pred ccc--ceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccc
Confidence 124 67788765 1112345688899999999999999999887778899999999999999999997655
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.38 E-value=5.8e-12 Score=108.26 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=100.9
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHh-----------------ccccceeeEeCCCCcccchHHHHHHHHHcCcE
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFAT-----------------KTEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~-----------------~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (162)
+|+|++.+....++++.|+...+..|..+.+ ...+..+..++|++ +.|+++|++.+.+ ++
T Consensus 164 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~--~~ 240 (463)
T PRK12416 164 QIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL-STIIDRLEEVLTE--TV 240 (463)
T ss_pred HHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH-HHHHHHHHHhccc--cc
Confidence 5899999999999999999875554432110 12233566778888 4588999999866 79
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEE
Q 031284 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (162)
Q Consensus 64 i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l 143 (162)
|++|++|++|+.++ + ++ .|++. +|+.+.||+||+|+|++.+.+|+++. +....+.++++.++.++++
T Consensus 241 i~~~~~V~~I~~~~---~--~~-~v~~~---~g~~~~ad~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l 307 (463)
T PRK12416 241 VKKGAVTTAVSKQG---D--RY-EISFA---NHESIQADYVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYL 307 (463)
T ss_pred EEcCCEEEEEEEcC---C--EE-EEEEC---CCCEEEeCEEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEE
Confidence 99999999999876 3 33 45444 57788999999999999998888752 2344667788889999999
Q ss_pred EeCccc
Q 031284 144 RYNGWV 149 (162)
Q Consensus 144 ~~d~~~ 149 (162)
+|+++.
T Consensus 308 ~~~~~~ 313 (463)
T PRK12416 308 GFDILD 313 (463)
T ss_pred Eechhh
Confidence 998653
No 11
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.35 E-value=2.5e-11 Score=105.37 Aligned_cols=135 Identities=16% Similarity=0.097 Sum_probs=95.0
Q ss_pred CCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE
Q 031284 12 IDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (162)
Q Consensus 12 ~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~ 91 (162)
.+|++.++...+..+..+ ...+.++.|+. ..+++.|++.++++|++|+++++|++|..++ + ++++|++.
T Consensus 190 ~~p~~~~~~~~l~~~~~~-----~~g~~~~~gG~-~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~V~~~ 258 (502)
T TIGR02734 190 GNPFRTPSIYALISALER-----EWGVWFPRGGT-GALVAAMAKLAEDLGGELRLNAEVIRIETEG---G--RATAVHLA 258 (502)
T ss_pred cCcccchHHHHHHHHHHh-----hceEEEcCCCH-HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC---C--EEEEEEEC
Confidence 456666655432221111 12334677776 5799999999999999999999999999886 5 77888876
Q ss_pred ecCCceEEeCCEEEEcCChhH-HhhcCCchhhcchhhhhhhcCC-CCCEEEEEEEeC---cccCc--ccceecccc
Q 031284 92 KATDKKVVQADAYVAACDVPG-IKRLLPSSWREMKFFNNIYALV-GVPVVTVQLRYN---GWVTE--LQDLERSRS 160 (162)
Q Consensus 92 ~~~~g~~~~aD~VVsa~~~~~-~~~Ll~~~~~~~~~~~~l~~l~-~~~~~~v~l~~d---~~~~~--~~~~~f~~~ 160 (162)
+|+.+.||.||+|++++. +..|+++......+.+++++++ +.+.+++|+.++ ++++. .++++++++
T Consensus 259 ---~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~ 331 (502)
T TIGR02734 259 ---DGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPR 331 (502)
T ss_pred ---CCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcC
Confidence 788899999999999864 5568876533222334556666 345888999998 56653 347777554
No 12
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.33 E-value=2.1e-11 Score=103.72 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=100.2
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHh---------------c--cccceeeEeCCCCcccchHHHHHHHHHcCcE
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFAT---------------K--TEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~---------------~--~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (162)
+|+|++.+..+.+++++|+..++..+..+.. . ..+..+..++|++ +.+++.+++.+.+. +
T Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l~~~l~~~--~ 235 (451)
T PRK11883 159 LIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGL-QSLIEALEEKLPAG--T 235 (451)
T ss_pred HHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHH-HHHHHHHHHhCcCC--e
Confidence 5889999999999999999987655543211 0 1133455677777 45888888877654 9
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEE
Q 031284 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (162)
Q Consensus 64 i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l 143 (162)
|++|++|++|..++ + .+ .|.++ +|+.+.||+||+|+|++.+.+++.+. +..+.++++++.++.++++
T Consensus 236 i~~~~~V~~i~~~~---~--~~-~v~~~---~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~~~v~l 302 (451)
T PRK11883 236 IHKGTPVTKIDKSG---D--GY-EIVLS---NGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSVATVAL 302 (451)
T ss_pred EEeCCEEEEEEEcC---C--eE-EEEEC---CCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCceEEEEE
Confidence 99999999998876 3 32 44444 67889999999999999988887642 2345677888889999999
Q ss_pred EeCccc
Q 031284 144 RYNGWV 149 (162)
Q Consensus 144 ~~d~~~ 149 (162)
+|+++.
T Consensus 303 ~~~~~~ 308 (451)
T PRK11883 303 AFPESA 308 (451)
T ss_pred Eecccc
Confidence 999985
No 13
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.32 E-value=3e-11 Score=105.01 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=91.9
Q ss_pred CCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe
Q 031284 13 DCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK 92 (162)
Q Consensus 13 ~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~ 92 (162)
++++.++.....++.. .....+.++.|+. ..++++|++.++++||+|+++++|++|..++ + ++.+|++.
T Consensus 200 p~~~~p~~~~~~~~~~----~~~~g~~~~~gG~-~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~~- 268 (493)
T TIGR02730 200 PADQTPMINAGMVFSD----RHYGGINYPKGGV-GQIAESLVKGLEKHGGQIRYRARVTKIILEN---G--KAVGVKLA- 268 (493)
T ss_pred CcccchhhhHHHhhcc----cccceEecCCChH-HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC---C--cEEEEEeC-
Confidence 4466666555444322 1223556788777 4699999999999999999999999999886 5 78899887
Q ss_pred cCCceEEeCCEEEEcCChh-HHhhcCCchhhcchhhhhhhcCCCC-CEEEEEEEeCcccC
Q 031284 93 ATDKKVVQADAYVAACDVP-GIKRLLPSSWREMKFFNNIYALVGV-PVVTVQLRYNGWVT 150 (162)
Q Consensus 93 ~~~g~~~~aD~VVsa~~~~-~~~~Ll~~~~~~~~~~~~l~~l~~~-~~~~v~l~~d~~~~ 150 (162)
+|++++||.||+|++++ ++.+|+++...+..+...+++++.+ +.+++|+.++++..
T Consensus 269 --~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~ 326 (493)
T TIGR02730 269 --DGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVL 326 (493)
T ss_pred --CCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEecCccC
Confidence 78889999999999876 5667998653322333344555544 48999999998663
No 14
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.26 E-value=4.6e-11 Score=102.90 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=103.3
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhccc-----------------cceeeEeCCCCcccchHHHHHHHHHcCcE
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTE-----------------ASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~-----------------~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (162)
+|+|++.+.-..+++++||+.....+..-.+... ...++.++|++ +.|++++++.++..
T Consensus 153 ~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~-~~l~~al~~~l~~~--- 228 (444)
T COG1232 153 FIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGL-QSLIEALAEKLEAK--- 228 (444)
T ss_pred HHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccH-HHHHHHHHHHhhhc---
Confidence 5789999999999999999966665554221111 23688899998 55999999999988
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEE
Q 031284 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (162)
Q Consensus 64 i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l 143 (162)
|++|++|++|..+++ + .+++.+ +|+.+.||.||+++|++.+..++++ .+..+-.+.+.+.+++|+.+
T Consensus 229 i~~~~~V~~i~~~~~--~----~~~~~~---~g~~~~~D~VI~t~p~~~l~~ll~~----~~~~~~~~~~~~~s~~~vv~ 295 (444)
T COG1232 229 IRTGTEVTKIDKKGA--G----KTIVDV---GGEKITADGVISTAPLPELARLLGD----EAVSKAAKELQYTSVVTVVV 295 (444)
T ss_pred eeecceeeEEEEcCC--c----cEEEEc---CCceEEcceEEEcCCHHHHHHHcCC----cchhhhhhhccccceEEEEE
Confidence 999999999999852 3 344455 6888999999999999999999997 23344566777778999999
Q ss_pred EeCcc
Q 031284 144 RYNGW 148 (162)
Q Consensus 144 ~~d~~ 148 (162)
.++++
T Consensus 296 ~~~~~ 300 (444)
T COG1232 296 GLDEK 300 (444)
T ss_pred Eeccc
Confidence 99886
No 15
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.22 E-value=1.3e-10 Score=99.45 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=97.3
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHH-----------Hhc---cc-----------cceeeEeCCCCcccchHHHHH
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALF-----------ATK---TE-----------ASLLRMLKGSPDVYLSGPIRK 55 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~-----------~~~---~~-----------~~~~~~~~g~~~~~l~~~l~~ 55 (162)
+|+|++.+..+.+++++|+.+++..+... ... .. +..+..+.|++ +.|++.+++
T Consensus 155 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~ 233 (462)
T TIGR00562 155 LIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGL-ETLPEEIEK 233 (462)
T ss_pred HHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhH-HHHHHHHHH
Confidence 58899999999999999999877554311 000 00 11133345555 357788887
Q ss_pred HHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCC
Q 031284 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVG 135 (162)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~ 135 (162)
.+. .++|++|++|++|..+++ ++ .|+++ +|+.+.||+||+|+|++.+..|+|+. .....+.+.++++
T Consensus 234 ~l~--~~~i~~~~~V~~I~~~~~-----~~-~v~~~---~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~l~~l~~ 300 (462)
T TIGR00562 234 RLK--LTKVYKGTKVTKLSHRGS-----NY-TLELD---NGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSHLDKIHS 300 (462)
T ss_pred Hhc--cCeEEcCCeEEEEEecCC-----cE-EEEEC---CCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHHHhcCCC
Confidence 775 279999999999988752 22 34444 56789999999999999999998763 2335567888999
Q ss_pred CCEEEEEEEeCcc
Q 031284 136 VPVVTVQLRYNGW 148 (162)
Q Consensus 136 ~~~~~v~l~~d~~ 148 (162)
.++.++.+.|+++
T Consensus 301 ~~~~~v~l~~~~~ 313 (462)
T TIGR00562 301 PPVANVNLGFPEG 313 (462)
T ss_pred CceEEEEEEEchH
Confidence 9999999999775
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.18 E-value=3e-10 Score=98.36 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=97.6
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHH---------------HHhc---------------cccceeeEeCCCCcccch
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFAL---------------FATK---------------TEASLLRMLKGSPDVYLS 50 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~---------------~~~~---------------~~~~~~~~~~g~~~~~l~ 50 (162)
||+|++.+....++++.|+.+++..+.. +... ..+..+..++|++. .|+
T Consensus 164 ~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~L~ 242 (496)
T PLN02576 164 LIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQ-TLP 242 (496)
T ss_pred HHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHH-HHH
Confidence 5899999999999999999987654332 1110 01122344566764 588
Q ss_pred HHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc-eEEeCCEEEEcCChhHHhhcCCchhhcchhhh
Q 031284 51 GPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPGIKRLLPSSWREMKFFN 128 (162)
Q Consensus 51 ~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g-~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~ 128 (162)
+.|++.+ | ++|++|++|++|+.+++ + + ..|.+. .++| +.+.||+||+|+|++.+..|+++. .....+
T Consensus 243 ~~la~~l---~~~~i~l~~~V~~I~~~~~--~--~-~~v~~~-~~~g~~~~~ad~VI~a~P~~~l~~ll~~~--~~~~~~ 311 (496)
T PLN02576 243 DALAKRL---GKDKVKLNWKVLSLSKNDD--G--G-YSLTYD-TPEGKVNVTAKAVVMTAPLYVVSEMLRPK--SPAAAD 311 (496)
T ss_pred HHHHHhh---CcCcEEcCCEEEEEEECCC--C--c-EEEEEe-cCCCceeEEeCEEEECCCHHHHHHHhccc--CHHHHH
Confidence 8888766 4 78999999999998763 2 2 234333 2234 468999999999999999988752 223455
Q ss_pred hhhcCCCCCEEEEEEEeCccc
Q 031284 129 NIYALVGVPVVTVQLRYNGWV 149 (162)
Q Consensus 129 ~l~~l~~~~~~~v~l~~d~~~ 149 (162)
.+.++.+.++.+++++|+++.
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~ 332 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEA 332 (496)
T ss_pred HhccCCCCceEEEEEEEchHH
Confidence 778888889999999998854
No 17
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.06 E-value=3.4e-10 Score=96.78 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=79.3
Q ss_pred ccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 32 KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 32 ~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.++.+-++|+.|+.++ ++.++++-++++|++|.+++.|++|.+|+ | +++||+++ ||.++.+..||||+.++
T Consensus 250 d~~~g~~~Yp~GG~Ga-vs~aia~~~~~~GaeI~tka~Vq~Illd~---g--ka~GV~L~---dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGMGA-VSFAIAEGAKRAGAEIFTKATVQSILLDS---G--KAVGVRLA---DGTEVRSKIVVSNATPW 320 (561)
T ss_pred cccCCcccCCCCChhH-HHHHHHHHHHhccceeeehhhhhheeccC---C--eEEEEEec---CCcEEEeeeeecCCchH
Confidence 4567789999999965 99999999999999999999999999997 6 89999999 99999999999999986
Q ss_pred -HHhhcCCchhhcchhhhhhhcC
Q 031284 112 -GIKRLLPSSWREMKFFNNIYAL 133 (162)
Q Consensus 112 -~~~~Ll~~~~~~~~~~~~l~~l 133 (162)
++.+|+|.++...++ .++++
T Consensus 321 ~Tf~kLlp~e~LPeef--~i~q~ 341 (561)
T KOG4254|consen 321 DTFEKLLPGEALPEEF--VIQQL 341 (561)
T ss_pred HHHHHhCCCccCCchh--hhhhc
Confidence 688999988766553 44444
No 18
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=3.5e-09 Score=92.32 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=74.6
Q ss_pred ccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHH
Q 031284 34 EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGI 113 (162)
Q Consensus 34 ~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~ 113 (162)
...-+.+++|+. ..|+++|++.++++||+|+++++|++|.+++ | +.++++.. +|+.+++|.||+|+++...
T Consensus 212 ~~~G~~~p~GG~-~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~---g--~g~~~~~~---~g~~~~ad~vv~~~~~~~~ 282 (487)
T COG1233 212 LSGGVFYPRGGM-GALVDALAELAREHGGEIRTGAEVSQILVEG---G--KGVGVRTS---DGENIEADAVVSNADPALL 282 (487)
T ss_pred ccCCeeeeeCCH-HHHHHHHHHHHHHcCCEEECCCceEEEEEeC---C--cceEEecc---ccceeccceeEecCchhhh
Confidence 344567788888 4599999999999999999999999999997 5 55566554 5568899999999999656
Q ss_pred hhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcc
Q 031284 114 KRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGW 148 (162)
Q Consensus 114 ~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~ 148 (162)
..+.++..+ ..++. ...+....+..++.++..
T Consensus 283 ~~l~~~~~~-~~~~~--~~~~~~~al~~~~g~~~~ 314 (487)
T COG1233 283 ARLLGEARR-PRYRG--SYLKSLSALSLYLGLKGD 314 (487)
T ss_pred hhhhhhhhh-hcccc--chhhhhHHHHhccCCCCC
Confidence 666665332 11111 222233466778888775
No 19
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.88 E-value=3.4e-09 Score=87.56 Aligned_cols=136 Identities=22% Similarity=0.137 Sum_probs=90.4
Q ss_pred hhhHHhHhCCCCCccccHHHHHHHHHHHHhc-----cccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEec
Q 031284 2 WDPVAYALGFIDCDNISARCMLTIFALFATK-----TEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYD 76 (162)
Q Consensus 2 w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~-----~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~ 76 (162)
|.++...+.+..+...|+......+..+... ..........| .+...+....+..|++|++|++|++|..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~g~~i~l~~~V~~I~~~ 238 (450)
T PF01593_consen 163 FRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMG----GLSLALALAAEELGGEIRLNTPVTRIERE 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETT----TTHHHHHHHHHHHGGGEESSEEEEEEEEE
T ss_pred HHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeeccc----chhHHHHHHHhhcCceeecCCcceecccc
Confidence 4566677777777888888544444432211 11122222233 45677788888889999999999999999
Q ss_pred cCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhh--cCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCcc
Q 031284 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR--LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTEL 152 (162)
Q Consensus 77 ~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~--Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~ 152 (162)
+ + ++ .+.+. +|+.++||+||+|+|+..+.+ +.|+... ...+.++++...++..+++.|+++....
T Consensus 239 ~---~--~v-~v~~~---~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~--~~~~a~~~~~~~~~~~v~l~~~~~~~~~ 305 (450)
T PF01593_consen 239 D---G--GV-TVTTE---DGETIEADAVISAVPPSVLKNILLLPPLPE--DKRRAIENLPYSSVSKVFLGFDRPFWPP 305 (450)
T ss_dssp S---S--EE-EEEET---TSSEEEESEEEE-S-HHHHHTSEEESTSHH--HHHHHHHTEEEEEEEEEEEEESSGGGGS
T ss_pred c---c--cc-ccccc---cceEEecceeeecCchhhhhhhhhcccccc--cccccccccccCcceeEEEeeecccccc
Confidence 7 4 44 45455 788999999999999998884 5554221 1233456667667889999999988654
No 20
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.82 E-value=3.5e-08 Score=87.40 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCCCCccccHHHHHHHHHHHH----hccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEec-cCCCCcce
Q 031284 10 GFIDCDNISARCMLTIFALFA----TKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYD-KAANAETY 84 (162)
Q Consensus 10 ~~~~~~~~Sa~~~~~~l~~~~----~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~-~~~~~~~~ 84 (162)
+|...+..||+-+...|++|. +-.+.+.+.+.+...-+.|+.||.++++++||+|++|++|++|..+ +++.+ +
T Consensus 185 ~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~--~ 262 (576)
T PRK13977 185 MFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKK--T 262 (576)
T ss_pred HHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCce--E
Confidence 377789999999999999884 3345667778888888999999999999999999999999999986 21114 7
Q ss_pred EEEEEEEecCCce---EEeCCEEEEcCC
Q 031284 85 VKGLAMSKATDKK---VVQADAYVAACD 109 (162)
Q Consensus 85 v~gv~~~~~~~g~---~~~aD~VVsa~~ 109 (162)
|+||.+.++++++ ..++|.||.+..
T Consensus 263 VtgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 263 ATAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred EEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 9999886432333 356999998875
No 21
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.40 E-value=2.9e-06 Score=73.46 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=57.6
Q ss_pred ceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 36 SLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 36 ~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+.+.++.|+.. .|++.+.+.++..||++++|++|++|..+++ + ++.+|+++ +|+.+.|+.||++...
T Consensus 222 ~p~~yp~gG~g-~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--g--~~~~V~~~---~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 222 SPFIYPLYGLG-GLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN--G--KVCGVKSE---GGEVAKCKLVICDPSY 288 (443)
T ss_pred CcceeeCCCHH-HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC--C--eEEEEEEC---CCcEEECCEEEECccc
Confidence 45678888875 5999999999999999999999999998863 6 67888877 7889999999997653
No 22
>PLN02676 polyamine oxidase
Probab=98.37 E-value=2.2e-06 Score=74.95 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=67.0
Q ss_pred CCCCcccchHHHHHHHHHc------CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhh
Q 031284 42 KGSPDVYLSGPIRKYITDK------GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR 115 (162)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~------Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~ 115 (162)
+|++ +.|++.|++.+.++ +.+|++|++|++|..+++ + + .|.+. +|+++.||+||+++|+..+++
T Consensus 220 ~~G~-~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--g---V-~V~~~---~G~~~~a~~VIvtvPl~vLk~ 289 (487)
T PLN02676 220 PRGY-ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--G---V-TVKTE---DGSVYRAKYVIVSVSLGVLQS 289 (487)
T ss_pred CCCH-HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCC--c---E-EEEEC---CCCEEEeCEEEEccChHHhcc
Confidence 3455 45888888877554 357999999999988763 3 2 34444 678899999999999998875
Q ss_pred -cCCch-hhcchhhhhhhcCCCCCEEEEEEEeCcccC
Q 031284 116 -LLPSS-WREMKFFNNIYALVGVPVVTVQLRYNGWVT 150 (162)
Q Consensus 116 -Ll~~~-~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~ 150 (162)
.+.-. ..+....+-++++....+.=+++.|++|+=
T Consensus 290 ~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW 326 (487)
T PLN02676 290 DLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFW 326 (487)
T ss_pred CceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCC
Confidence 22100 111222344566665567788888888643
No 23
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=66.82 Aligned_cols=130 Identities=16% Similarity=0.058 Sum_probs=90.5
Q ss_pred ChhhHHhHhCCCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHc----CcEEEcCceeeEEEec
Q 031284 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDK----GGRFHLRWGCREILYD 76 (162)
Q Consensus 1 ~w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~----Gg~i~~~~~V~~I~~~ 76 (162)
+|.||..+..+.+..+++.--++..++.+.. ++... +++-+.-..+..+-.+++++. +++|.++++|.+|..-
T Consensus 170 ~l~P~~aaiwstp~~d~~~~pa~~~~~f~~n--hGll~-l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rl 246 (447)
T COG2907 170 FLQPLVAAIWSTPLADASRYPACNFLVFTDN--HGLLY-LPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRL 246 (447)
T ss_pred hHHHHHHHHhcCcHhhhhhhhHHHHHHHHhc--cCcee-cCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeC
Confidence 5899999999999999999888888865544 33333 555555555666666666554 5679999999999876
Q ss_pred cCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEE
Q 031284 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLR 144 (162)
Q Consensus 77 ~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~ 144 (162)
.+ | +++. ..+|+.-++|+||.+++++....||++.. ....+-+..+.++..-.|+.-
T Consensus 247 Pd--G------v~l~-~~~G~s~rFD~vViAth~dqAl~mL~e~s--p~e~qll~a~~Ys~n~aVlht 303 (447)
T COG2907 247 PD--G------VVLV-NADGESRRFDAVVIATHPDQALALLDEPS--PEERQLLGALRYSANTAVLHT 303 (447)
T ss_pred CC--c------eEEe-cCCCCccccceeeeecChHHHHHhcCCCC--HHHHHHHHhhhhhhceeEEee
Confidence 63 4 3332 11588889999999999988777888631 223345566666555555444
No 24
>PLN02568 polyamine oxidase
Probab=98.10 E-value=2.9e-05 Score=68.78 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=67.8
Q ss_pred eCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhh-----
Q 031284 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----- 115 (162)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~----- 115 (162)
..|++ +.|.+.|++.+. +.+|++|++|++|..++ + .+ .|.+. +|+.+.||+||+++|+..+++
T Consensus 237 i~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~---~--~v-~V~~~---dG~~~~aD~VIvTvPl~vL~~~~~~~ 304 (539)
T PLN02568 237 IAKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQD---E--PV-KLHFA---DGSTMTADHVIVTVSLGVLKAGIGED 304 (539)
T ss_pred ECCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeC---C--eE-EEEEc---CCCEEEcCEEEEcCCHHHHhhccccc
Confidence 34455 357788887764 56899999999999876 2 22 34444 677899999999999998874
Q ss_pred --cCCchhhcchhhhhhhcCCCCCEEEEEEEeCccc
Q 031284 116 --LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (162)
Q Consensus 116 --Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~ 149 (162)
.+.+. .+....+.++++....+.-+++.|++++
T Consensus 305 ~i~F~P~-LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 305 SGLFSPP-LPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred cceecCC-CCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 12221 1222345677777667888899998874
No 25
>PLN02529 lysine-specific histone demethylase 1
Probab=97.99 E-value=8e-05 Score=68.23 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=66.1
Q ss_pred eEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhc--
Q 031284 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-- 116 (162)
Q Consensus 39 ~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~L-- 116 (162)
..+.|++ +.|+++|++ +..|++|++|++|..+++ + |++.. +++.+.||+||+++|+..+++.
T Consensus 350 ~~i~GG~-~~Li~aLA~-----~L~IrLnt~V~~I~~~~d--G------VtV~t--~~~~~~AD~VIVTVPlgVLk~~~I 413 (738)
T PLN02529 350 CFLAGGN-WRLINALCE-----GVPIFYGKTVDTIKYGND--G------VEVIA--GSQVFQADMVLCTVPLGVLKKRTI 413 (738)
T ss_pred EEECCcH-HHHHHHHHh-----cCCEEcCCceeEEEEcCC--e------EEEEE--CCEEEEcCEEEECCCHHHHHhccc
Confidence 3355565 357777665 446999999999998763 2 33321 4568999999999999998742
Q ss_pred --CCchhhcchhhhhhhcCCCCCEEEEEEEeCccc
Q 031284 117 --LPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (162)
Q Consensus 117 --l~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~ 149 (162)
.|+ .+....+.++++...++.-+++.|++++
T Consensus 414 ~F~Pp--LP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 414 RFEPE--LPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred cCCCC--CCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 232 1222345678888888999999999885
No 26
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.92 E-value=3e-05 Score=63.04 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+.+.|.+.+++.|++|+.+++|++|..++ + ++++|++. +|+ +.||.||.|+.+.+
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~--~v~gv~~~---~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG---G--RVTGVRTS---DGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET---T--EEEEEEET---TEE-EEECEEEE--GGGH
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc---c--cccccccc---ccc-cccceeEecccccc
Confidence 5789999999999999999999999999997 5 78889887 676 99999999998764
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.89 E-value=0.00012 Score=67.74 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=68.5
Q ss_pred eeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhh--
Q 031284 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR-- 115 (162)
Q Consensus 38 ~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~-- 115 (162)
.....||+ +.|+++|++.+ .|++|++|++|..+++ + + -| +. +|+.+.||+||+++|+..+++
T Consensus 429 ~~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~d--g---V-~V-~~---~G~~~~AD~VIvTvPl~vLk~~~ 492 (808)
T PLN02328 429 HCFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVD--G---V-IV-YA---GGQEFHGDMVLCTVPLGVLKKGS 492 (808)
T ss_pred EEEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCC--e---E-EE-Ee---CCeEEEcCEEEECCCHHHHhhcc
Confidence 44455666 46888887765 3999999999998763 3 3 22 33 578899999999999998873
Q ss_pred --cCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccC
Q 031284 116 --LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVT 150 (162)
Q Consensus 116 --Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~ 150 (162)
+.|+- +....+.++++.+.++.-+++.|++++=
T Consensus 493 I~F~P~L--P~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 493 IEFYPEL--PQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred cccCCCC--CHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 33331 2223456788888889999999988753
No 28
>PLN02268 probable polyamine oxidase
Probab=97.86 E-value=0.00014 Score=62.13 Aligned_cols=81 Identities=17% Similarity=0.057 Sum_probs=56.7
Q ss_pred cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhc-CCchh-hcchhhhhhhcCCCCC
Q 031284 60 KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-LPSSW-REMKFFNNIYALVGVP 137 (162)
Q Consensus 60 ~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~L-l~~~~-~~~~~~~~l~~l~~~~ 137 (162)
.|++|++|++|++|..+++ + + .|++. +|+.+.||+||+++|+..++++ +.-.+ .+....+.++++...+
T Consensus 209 ~~~~i~~~~~V~~i~~~~~--~---v-~v~~~---~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~ 279 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYN--G---V-KVTVE---DGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGI 279 (435)
T ss_pred ccCceeCCCeeEEEEEcCC--c---E-EEEEC---CCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccc
Confidence 3778999999999998763 3 3 34444 6778999999999999988653 22111 1122244556676667
Q ss_pred EEEEEEEeCccc
Q 031284 138 VVTVQLRYNGWV 149 (162)
Q Consensus 138 ~~~v~l~~d~~~ 149 (162)
+.-+++.|++++
T Consensus 280 ~~Kv~l~f~~~f 291 (435)
T PLN02268 280 ENKIALHFDSVF 291 (435)
T ss_pred eeEEEEEeCCCC
Confidence 888999999874
No 29
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.84 E-value=0.00025 Score=61.97 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=74.3
Q ss_pred HHhHhCCCCCccccHHHHHHHHHHHHhcccc----ceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCC
Q 031284 5 VAYALGFIDCDNISARCMLTIFALFATKTEA----SLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (162)
Q Consensus 5 ~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~ 80 (162)
++++.+|..-.-.||.-+...|++|...-++ +.+..-+=..=|.|+.||.++|+++||++++|++|+.|.++.+++
T Consensus 161 ~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~ 240 (500)
T PF06100_consen 161 YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGD 240 (500)
T ss_pred HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCC
Confidence 3566778888888999999999998765443 233333333447899999999999999999999999999974322
Q ss_pred CcceEEEEEEEecCCceEE---eCCEEEEcCC
Q 031284 81 AETYVKGLAMSKATDKKVV---QADAYVAACD 109 (162)
Q Consensus 81 ~~~~v~gv~~~~~~~g~~~---~aD~VVsa~~ 109 (162)
.+ .++.+.+.+++..+.+ +-|.|+.+..
T Consensus 241 ~~-~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 241 KK-TATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred Ce-eEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 32 4667777644333344 3777777654
No 30
>PLN03000 amine oxidase
Probab=97.82 E-value=0.00021 Score=66.40 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=67.8
Q ss_pred EeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHh----h
Q 031284 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK----R 115 (162)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~----~ 115 (162)
...|++ +.|+++|++.| .|++|++|++|..+++ + + .|.+ +++.+.||+||+++|+.+++ .
T Consensus 375 ~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~d--g---V-~V~~----~~~~~~AD~VIvTVPlgVLk~~~I~ 438 (881)
T PLN03000 375 FLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGSN--G---V-KVIA----GNQVYEGDMVLCTVPLGVLKNGSIK 438 (881)
T ss_pred EeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECCC--e---E-EEEE----CCcEEEeceEEEcCCHHHHhhCcee
Confidence 355666 45888888776 3999999999998763 3 2 2322 24589999999999999988 3
Q ss_pred cCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCc
Q 031284 116 LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTE 151 (162)
Q Consensus 116 Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~ 151 (162)
+.|+- +....+-++++....+.-+++.|++++=+
T Consensus 439 F~PpL--P~~K~~AI~rL~~G~l~KViL~Fd~~FW~ 472 (881)
T PLN03000 439 FVPEL--PQRKLDCIKRLGFGLLNKVAMLFPYVFWS 472 (881)
T ss_pred eCCCC--CHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence 44542 22234567888877799999999887543
No 31
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.74 E-value=0.00018 Score=63.33 Aligned_cols=131 Identities=21% Similarity=0.176 Sum_probs=90.0
Q ss_pred hhhHHhHhCCCCCccccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCC
Q 031284 2 WDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANA 81 (162)
Q Consensus 2 w~p~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~ 81 (162)
|...-+...+....+-....+|.+...|.++. .. .. ..++.. .+...++. |.+|++++.|.+|....+ +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-~~-~~~G~~-~v~~~la~-----~l~I~~~~~v~~i~~~~~--~ 246 (501)
T KOG0029|consen 178 WHLVNLELTFIAHLENASARLWDQDELFGGGG-IH-LL-MKGGYE-PVVNSLAE-----GLDIHLNKRVRKIKYGDD--G 246 (501)
T ss_pred HHHHHHHHHhhccHhHhhHHhhhhhhhccccc-ch-hH-hhCCcc-HHHhhcCC-----CcceeeceeeEEEEEecC--C
Confidence 55666667777777777777777777666654 11 22 344442 24444444 999999999999999874 5
Q ss_pred cceEEEEEEEecCCceEEeCCEEEEcCChhHHhh----cCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCc
Q 031284 82 ETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTE 151 (162)
Q Consensus 82 ~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~----Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~ 151 (162)
. ..+++. ++..+++|.||+++|+..++. +.|+ .+....+.++++..-.+.-+.++|++.+=+
T Consensus 247 --~-~~~~~~---~~~~~~~d~vvvt~pl~vLk~~~i~F~P~--Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~ 312 (501)
T KOG0029|consen 247 --A-VKVTVE---TGDGYEADAVVVTVPLGVLKSGLIEFSPP--LPRWKQEAIDRLGFGLVNKVILEFPRVFWD 312 (501)
T ss_pred --c-eEEEEE---CCCeeEeeEEEEEccHHHhccCceeeCCC--CcHHHHHHHHhcCCCceeEEEEEeccccCC
Confidence 3 244444 455599999999999998876 2232 223456678888877788889999887753
No 32
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.67 E-value=0.00014 Score=62.90 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
-.+++.|.++|++.|++|+++++|..|++++ + .+.++.++ +|+++++|+||.|..-
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~---~--~~~~v~~~---~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED---N--EVLGVKLT---KGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC---C--ceEEEEcc---CCcEEecCEEEEccCc
Confidence 4578999999999999999999999999997 3 57788777 8999999999999874
No 33
>PLN02976 amine oxidase
Probab=97.59 E-value=0.00043 Score=67.24 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=62.4
Q ss_pred eCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccC-------CCCcceEEEEEEEecCCceEEeCCEEEEcCChhHH
Q 031284 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKA-------ANAETYVKGLAMSKATDKKVVQADAYVAACDVPGI 113 (162)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~-------~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~ 113 (162)
+.||+ +.|++.|++.+ .|++|++|++|...++ .++ .+ .|.+. +|+.+.||+||+++|+..+
T Consensus 931 IkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~d--GV-tVtTs---DGetftADaVIVTVPLGVL 998 (1713)
T PLN02976 931 IKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRK--KV-KVSTS---NGSEFLGDAVLITVPLGCL 998 (1713)
T ss_pred eCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCC--cE-EEEEC---CCCEEEeceEEEeCCHHHh
Confidence 55666 45778877754 4999999999988420 001 12 33333 7888999999999999988
Q ss_pred hh--c-CCchhhcchhhhhhhcCCCCCEEEEEEEeCcccCc
Q 031284 114 KR--L-LPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTE 151 (162)
Q Consensus 114 ~~--L-l~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~ 151 (162)
+. + +.+. .+.....-+..+..-.+.=++|.|++++-+
T Consensus 999 Kag~I~FsPP-LPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 999 KAETIKFSPP-LPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred hhcccccCCc-ccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 62 2 2221 111122345666655566788888887543
No 34
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.54 E-value=0.00035 Score=56.90 Aligned_cols=57 Identities=19% Similarity=0.078 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+...+.+.++++|++++.+++|++|..++ + ++.+|.+. +| .+.||.||.|+.+++
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~---~--~~~~v~~~---~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG---E--KVTAIVTP---SG-DVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC---C--EEEEEEcC---CC-EEECCEEEEcCChhh
Confidence 4688899999999999999999999999875 5 67777654 45 789999999999875
No 35
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.43 E-value=0.0004 Score=59.66 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=45.4
Q ss_pred eEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 39 ~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
-||.-.-+..+.+.|.+.++++|++|+++++|++|..++ + .+..|+++ +++.+.||.||.|+.
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~---~--~~f~v~~~---~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE---D--GVFGVKTK---NGGEYEADAVILATG 163 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET---T--EEEEEEET---TTEEEEESEEEE---
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC---C--ceeEeecc---CcccccCCEEEEecC
Confidence 455555667899999999999999999999999999986 3 56677764 578999999999976
No 36
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.40 E-value=0.0011 Score=57.27 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceE-EeCCEEEEcCChhH--HhhcC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV-VQADAYVAACDVPG--IKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~-~~aD~VVsa~~~~~--~~~Ll 117 (162)
.+...|++.++++|+++++|++|+.|+.+++ | +.-+.++ +|++ ++|+.||.++..++ +.++.
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d--g---~~~~~~~---~g~~~~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD--G---VFVLNTS---NGEETLEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC--c---eEEEEec---CCcEEEEeeEEEECCchhHHHHHHHh
Confidence 4678899999999999999999999999873 3 3344444 6665 99999999999764 44443
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.37 E-value=0.00057 Score=58.27 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=50.1
Q ss_pred EeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
||.-+-++.|++.|.+.++++||+|+++++|.+|..+++ .-.+.++ +|+++.||.+|.|+.
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~------~f~l~t~---~g~~i~~d~lilAtG 164 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS------GFRLDTS---SGETVKCDSLILATG 164 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc------eEEEEcC---CCCEEEccEEEEecC
Confidence 455456678999999999999999999999999988852 2345555 677899999999886
No 38
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0011 Score=57.26 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhc-CCchh
Q 031284 43 GSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-LPSSW 121 (162)
Q Consensus 43 g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~L-l~~~~ 121 (162)
|+. +.|.+++++ +.|-.|.++++|.+|..+++ | |+++.+ +.+.+.+|.+|+++|+.++.++ +.+ .
T Consensus 206 GGm-d~la~Afa~---ql~~~I~~~~~V~rI~q~~~--g------V~Vt~~-~~~~~~ad~~i~tiPl~~l~qI~f~P-~ 271 (450)
T COG1231 206 GGM-DQLAEAFAK---QLGTRILLNEPVRRIDQDGD--G------VTVTAD-DVGQYVADYVLVTIPLAILGQIDFAP-L 271 (450)
T ss_pred ccH-HHHHHHHHH---HhhceEEecCceeeEEEcCC--e------EEEEeC-CcceEEecEEEEecCHHHHhhcccCC-C
Confidence 554 446655554 35789999999999999863 3 444322 3368899999999999988774 222 1
Q ss_pred hcchhhhhhhcCCCCCEEEEEEEeCcccCcccc
Q 031284 122 REMKFFNNIYALVGVPVVTVQLRYNGWVTELQD 154 (162)
Q Consensus 122 ~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~ 154 (162)
...++.+.++...+.+..=..+.|++|+=+.++
T Consensus 272 l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~ 304 (450)
T COG1231 272 LPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG 304 (450)
T ss_pred CCHHHHHHhcCcCcchheeeeeecCchhhhhcc
Confidence 223345555666666677777778888754433
No 39
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.30 E-value=0.0015 Score=56.37 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
-.+.+.|.+.++++||+++.+++|.++..++ + ++++|.+. ++ ..++||+||.|+...
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~---~--~v~~V~t~---~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG---N--RVTRIHTR---NHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC---C--eEEEEEec---CCccceEECCEEEEccCCC
Confidence 5688899999999999999999999999887 4 68887654 44 479999999999866
No 40
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.13 E-value=0.0019 Score=54.57 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
.+.+.+.+.+++.|++|+++++|++|+.++ + ++.+|++. +..+.||.||.++....
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~v~t~----~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG---G--RITGVQTG----GGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--EEEEEEeC----CcEEeCCEEEECCCcch
Confidence 677889999999999999999999998876 4 56666554 45789999999998753
No 41
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.13 E-value=0.0015 Score=55.29 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
..+.+.+.+.++++|++|+++++|++|..++ + +|+|++.....+|+ .+.|+.||+|+.
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~---g--~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED---G--RVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET---T--EEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC---C--ceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 4688999999999999999999999999986 6 89999886333455 578999999997
No 42
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.12 E-value=0.0044 Score=53.81 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHh--cc-ccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC
Q 031284 18 SARCMLTIFALFAT--KT-EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT 94 (162)
Q Consensus 18 Sa~~~~~~l~~~~~--~~-~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~ 94 (162)
+|.-.+..++.|++ ++ ..+.+.+|.-|++| |.+++.|.-.=.||.+.+|++|++|.++++ | ++.+|..
T Consensus 201 p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~--g--~~~gV~s---- 271 (438)
T PF00996_consen 201 PAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED--G--KVIGVKS---- 271 (438)
T ss_dssp BSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT--T--EEEEEEE----
T ss_pred cHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC--C--eEEEEec----
Confidence 45666666776543 33 35699999999865 999999999999999999999999999764 7 7888863
Q ss_pred CceEEeCCEEEEc
Q 031284 95 DKKVVQADAYVAA 107 (162)
Q Consensus 95 ~g~~~~aD~VVsa 107 (162)
+|+++.|+.||..
T Consensus 272 ~ge~v~~k~vI~d 284 (438)
T PF00996_consen 272 EGEVVKAKKVIGD 284 (438)
T ss_dssp TTEEEEESEEEEE
T ss_pred CCEEEEcCEEEEC
Confidence 5899999999975
No 43
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.96 E-value=0.0025 Score=55.47 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=58.3
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhh----cCCchhhcchhhhhhhcCCCCC
Q 031284 62 GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVP 137 (162)
Q Consensus 62 g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~----Ll~~~~~~~~~~~~l~~l~~~~ 137 (162)
.++++|++|.+|..++. + . +.+++. ||+++.|||||++++.-.+++ |+.+.. +..-.+.|.++..-.
T Consensus 244 ~~~~~~~rv~~I~~~~~--~--~-v~l~c~---dg~v~~adhVIvTvsLGvLk~~h~~lF~P~L-P~~K~~AIe~lgfGt 314 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNT--G--E-VKLRCS---DGEVFHADHVIVTVSLGVLKEQHHKLFVPPL-PAEKQRAIERLGFGT 314 (498)
T ss_pred hhhcccccceeeccCCC--C--c-EEEEEe---CCcEEeccEEEEEeechhhhhhhhhhcCCCC-CHHHHHHHHhccCCc
Confidence 56778899999999864 5 3 356777 899999999999999877765 543321 111233566666545
Q ss_pred EEEEEEEeCcccCccc
Q 031284 138 VVTVQLRYNGWVTELQ 153 (162)
Q Consensus 138 ~~~v~l~~d~~~~~~~ 153 (162)
+.=+||.|.+|.-+.+
T Consensus 315 v~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 315 VNKIFLEFEEPFWPSD 330 (498)
T ss_pred cceEEEEccCCCCCCC
Confidence 7778888877765543
No 44
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.0038 Score=53.86 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=96.3
Q ss_pred hhHHhHhCCCCCccccHHHHHHHHHH----------------HHhccc--------------cceeeEeCCCCcccchHH
Q 031284 3 DPVAYALGFIDCDNISARCMLTIFAL----------------FATKTE--------------ASLLRMLKGSPDVYLSGP 52 (162)
Q Consensus 3 ~p~~~~~~~~~~~~~Sa~~~~~~l~~----------------~~~~~~--------------~~~~~~~~g~~~~~l~~~ 52 (162)
+|||.+....+|++.|+...+.-+.. |.+++. ...+.-++|++ +.+.++
T Consensus 176 sp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGl-e~lP~a 254 (491)
T KOG1276|consen 176 SPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGL-ETLPKA 254 (491)
T ss_pred HHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhH-hHhHHH
Confidence 68999999999999999987643332 211111 12334456666 679999
Q ss_pred HHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce-EEeCCEEEEcCChhHHhhcCCchhhcchhhhhhh
Q 031284 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIY 131 (162)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~-~~~aD~VVsa~~~~~~~~Ll~~~~~~~~~~~~l~ 131 (162)
+.+.|.+.++.|.++-++..+..... | + +.+.+. +.++. ....++++.+.+.+.+.+|++... ......+.
T Consensus 255 ~~~~L~~~~v~i~~~~~~~~~sk~~~--~--~-~~~tl~-~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~--~sls~~L~ 326 (491)
T KOG1276|consen 255 LRKSLGEREVSISLGLKLSGNSKSRS--G--N-WSLTLV-DHSGTQRVVVSYDAATLPAVKLAKLLRGLQ--NSLSNALS 326 (491)
T ss_pred HHHHhcccchhhhccccccccccccc--C--C-ceeEeE-cCCCceeeeccccccccchHHhhhhccccc--hhhhhhhh
Confidence 99999999999999999999987643 3 1 223332 11333 344555666999999999998642 34456788
Q ss_pred cCCCCCEEEEEEEeCcc
Q 031284 132 ALVGVPVVTVQLRYNGW 148 (162)
Q Consensus 132 ~l~~~~~~~v~l~~d~~ 148 (162)
.+.++|+..|.+.|.++
T Consensus 327 ei~y~~V~vVn~~yp~~ 343 (491)
T KOG1276|consen 327 EIPYVPVAVVNTYYPKE 343 (491)
T ss_pred cCCCCceEEEEEeccCc
Confidence 89999999999998664
No 45
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.93 E-value=0.0043 Score=55.47 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce-EEeC-CEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQA-DAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~-~~~a-D~VVsa~~~ 110 (162)
..+++.|.+.++++|++|+++++|++|..++ + +++||++..+ ++. .+.| +.||.++..
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~---g--~v~GV~~~~~-~~~~~i~a~k~VVlAtGg 276 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED---G--RVAGAVVETP-GGLQEIRARKGVVLAAGG 276 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EEEEEEEEEC-CcEEEEEeCCEEEEcCCC
Confidence 3588999999999999999999999998875 6 7889876532 333 5788 999999874
No 46
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.91 E-value=0.0047 Score=54.26 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~ 112 (162)
..++..+++..+++|++|+.+++|++|..++ + ++.+|++....+| ..+.|+.||.|+.+++
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG---G--RVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 4678888999999999999999999999876 5 7888876421123 4789999999998753
No 47
>PRK07121 hypothetical protein; Validated
Probab=96.82 E-value=0.0062 Score=53.14 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeC-CEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQA-DAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~a-D~VVsa~~~ 110 (162)
..+.+.|.+.+++.|++|+++++|++|..+++ | ++.||+...++....+.| +.||.|+.-
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDD--G--RVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC--C--CEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 45888999999999999999999999998753 6 789998753222235788 999999873
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.81 E-value=0.0062 Score=52.61 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-ecCCceEEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-~~~~g~~~~aD~VVsa~~ 109 (162)
..+.+.|.+.+++.|++|+++++|++|..++ + ++++++.. .++....+.|+.||.|+.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~---g--~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDD---G--RFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--eEEEEEEEccCCceEEEECCEEEECCC
Confidence 4688899999999999999999999999865 6 78888763 222234689999999986
No 49
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.79 E-value=0.0056 Score=54.49 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=47.0
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCC-EEEEcCC
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD-AYVAACD 109 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD-~VVsa~~ 109 (162)
+..|.+.|.+.+++.|++|+++++|++|..++ + +|+||+...++....+.|+ .||+|+.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~~g~~~~i~A~~aVIlAtG 266 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED---G--RVVGVVVVRDGREVLIRARRGVLLASG 266 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEEEECCeEEEEEecceEEEecC
Confidence 45689999999999999999999999999875 6 8999987532222357784 7888876
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.78 E-value=0.0082 Score=53.30 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--CCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~--~~g~~~~aD~VVsa~~~~~ 112 (162)
..+...+++..+++|++++++++|++|..++ + ++++|++... +++..+.||.||.|+.+++
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG---D--TVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC---C--eEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 3567778888899999999999999999876 5 7888877421 1234789999999998763
No 51
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.75 E-value=0.0066 Score=54.40 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=46.9
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCC-EEEEcCC
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD-AYVAACD 109 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD-~VVsa~~ 109 (162)
...+...|.+.+++.|++|+++++|++|..+++ | +|+||+...++....+.|+ .||.|+.
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~--g--~V~Gv~~~~~~~~~~i~a~~aVilAtG 272 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPD--G--AVVGAVVEREGRTLRIGARRGVILATG 272 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCC--C--cEEEEEEEeCCcEEEEEeceeEEEecC
Confidence 346788899999999999999999999999753 7 8999987533222357787 5888875
No 52
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.71 E-value=0.0073 Score=53.75 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=46.6
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCC-EEEEcCC
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD-AYVAACD 109 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD-~VVsa~~ 109 (162)
.+..+...|.+.+++.|++|+++++|++|..++ + +|+||+...++....+.|+ .||.|+.
T Consensus 206 ~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~---g--~v~Gv~~~~~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 206 MGQALAAGLRIGLQRAGVPVLLNTPLTDLYVED---G--RVTGVHAAESGEPQLIRARRGVILASG 266 (557)
T ss_pred CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEeCCcEEEEEeceeEEEccC
Confidence 345688999999999999999999999999875 6 8999877532222357786 6888665
No 53
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.70 E-value=0.0036 Score=53.80 Aligned_cols=61 Identities=25% Similarity=0.180 Sum_probs=48.8
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce-EEeCCEEEEcCChh---HHhhcCC
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVP---GIKRLLP 118 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~-~~~aD~VVsa~~~~---~~~~Ll~ 118 (162)
+++.+.+...++|+++|++|++|+.|++|+.+ +|.+. +|+ .+++|.+|.++... .++.|.+
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----------~v~~~---~g~~~I~~~tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----------GVTLK---DGEEEIPADTVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----------cEEEc---cCCeeEecCEEEEcCCCcCChhhhhcCh
Confidence 55789999999999999999999999999554 35665 566 59999999999864 3555533
No 54
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.66 E-value=0.0037 Score=52.49 Aligned_cols=56 Identities=14% Similarity=-0.000 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+...+.+.+++ |++++.+++|.+|+.++ + + ..|++. +|+.+.||.||.|+.+++
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~---~--~-~~v~t~---~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG---E--G-WQLLDA---NGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC---C--e-EEEEeC---CCCEEEcCEEEEcCCccc
Confidence 4678889999998 99999999999998875 3 3 345554 676789999999998764
No 55
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.58 E-value=0.011 Score=50.68 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
.+.+.+.+.+++.|++|+++++|++|..+++ + +++|+++... +++ ++.+|.||.++..
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ--G--TVVGVVVKGK-GKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCC--C--cEEEEEEEeC-CCeEEEEecceEEEecCC
Confidence 5889999999999999999999999998653 6 7888877532 343 4789999999874
No 56
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.57 E-value=0.01 Score=53.06 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeC-CEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQA-DAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~a-D~VVsa~~ 109 (162)
..|.++|.+.+++.|++|+++++|++|..++ | +|+||....++....+.| +.||+|+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG---G--RVTGAVVDHRGREVTVTARRGVVLAAG 275 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC---C--EEEEEEEEECCcEEEEEcCCEEEEecC
Confidence 4799999999999999999999999998764 6 899997643211123556 58888886
No 57
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.56 E-value=0.0099 Score=53.13 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeC-CEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQA-DAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~a-D~VVsa~~~ 110 (162)
..|.+.|.+.++++|++|+++++|++|..++ + ++.||+...++....+.| +.||+|+.-
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH---G--RVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEecCCeEEEEEccceEEECCCC
Confidence 3688999999999999999999999998764 6 899987753211124676 789998873
No 58
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.53 E-value=0.012 Score=51.66 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC-CceEEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT-DKKVVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~-~g~~~~aD~VVsa~~ 109 (162)
..+++.|.+.+++.|++|+++++|++|..++ + ++.|+.+...+ ....+.||.||.++.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~---g--~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD---G--KVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC---C--EEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 3578999999999999999999999998764 6 78898775321 123688999999986
No 59
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.53 E-value=0.012 Score=50.52 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
.+.+.|.+.+++.|++|+++++|++|..+.+ ++ ++.++... +++..+.|+.||.++.
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~-~g--~v~gv~~~--~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAF-DG--AHDGPLTT--VGTHRITTQALVLAAG 180 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCC-CC--eEEEEEEc--CCcEEEEcCEEEEcCC
Confidence 5889999999999999999999999988620 16 78888653 1345789999999997
No 60
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.50 E-value=0.013 Score=52.39 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce-EEeCC-EEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQAD-AYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~-~~~aD-~VVsa~~ 109 (162)
..|.+.|.+.++++|++|+++++|++|..++ + +++||++... +++ .+.++ .||.++.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~---g--~V~GV~~~~~-~~~~~i~a~k~VVlAtG 272 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG---G--RVVGARVIDA-GGERRITARRGVVLACG 272 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEEcC-CceEEEEeCCEEEEcCC
Confidence 4688899999999999999999999999875 6 8999977522 233 46786 6888776
No 61
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.49 E-value=0.022 Score=49.18 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=45.2
Q ss_pred cccchHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+..+.+.|.+.+++ .|++|+++++|++|..++ + ++.|+....+++...+.|+.||.|+.-
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~---~--~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND---N--TCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC---C--EEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 34578888888875 599999999999998765 5 788876543211125899999999874
No 62
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.47 E-value=0.014 Score=50.40 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhc
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL 116 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~L 116 (162)
.+.+.+.+.+++.|++++++++|++++.++ + ++..+... ++....++||.||.|+....-..|
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~---~--~V~~v~~~-~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG---G--RVTAVWTR-NHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEee-CCceEEEECCEEEEeCCCcccCce
Confidence 577889999999999999999999998876 4 56665433 112246899999999886433334
No 63
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.43 E-value=0.013 Score=51.70 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHH----cC--cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITD----KG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~----~G--g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..++..+++.+++ .| ++|+++++|++|..++ + ....|.+. +| .+.||.||.++..++
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~---~--~~~~V~T~---~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN---D--SLYKIHTN---RG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC---C--CeEEEEEC---CC-EEEeCEEEECcChhH
Confidence 3578899999999 88 7899999999999875 3 34556554 44 689999999998765
No 64
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.35 E-value=0.012 Score=50.12 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=48.3
Q ss_pred eEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 39 ~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
-||...-+..+.+.|.+.+++.|++|+++++|++| ++ + + ..+.+. ++++.+.||.||.|+.-.
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~---~--~-~~v~~~--~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG---G--T-LRFETP--DGQSTIEADAVVLALGGA 140 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC---C--c-EEEEEC--CCceEEecCEEEEcCCCc
Confidence 45555677889999999999999999999999999 43 2 2 345443 133568999999999743
No 65
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.34 E-value=0.027 Score=50.31 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
+..|...|.+.+++.|++|+.++.|++|..++ | ++.|+......+|+ .+.|+.||+|+.
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~---g--~v~Ga~~~~~~~g~~~~i~AkaVILATG 178 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED---G--ECRGVIAYCLETGEIHRFRAKAVVLATG 178 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence 44688999999999999999999999999874 7 89998763222343 578999999987
No 66
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.32 E-value=0.019 Score=48.44 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+...+.+..+++|++++.+++|++|..+++ + ++.+|++. +| .+.+|.||.+++..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~--~~~~v~t~---~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG--G--RVIGVETT---RG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--C--cEEEEEeC---Cc-eEECCEEEECCChh
Confidence 4566788888999999999999999986532 4 56677655 45 68999988887754
No 67
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.32 E-value=0.016 Score=48.93 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH--HhhcC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG--IKRLL 117 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~--~~~Ll 117 (162)
..+.+.|.+.+++.|++++++++|++|..++ + .+ .|.+. +| .+.||.||.++.... +.+++
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~---~--~~-~V~~~---~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA---N--GV-VVRTT---QG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC---C--eE-EEEEC---CC-EEEeCEEEECCCcchHHHHHHh
Confidence 4678889999999999999999999998765 3 33 45444 44 789999999998653 44443
No 68
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.28 E-value=0.021 Score=50.04 Aligned_cols=61 Identities=7% Similarity=0.112 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~ 112 (162)
..+...+.+.++++|++|+++++|++|..+++ + .+ .+.+....+| ..++||.||.+++.+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~--~--~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD--G--SW-TVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--C--eE-EEEEeeccCCceEEEECCEEEECCCcch
Confidence 46788999999999999999999999987642 3 22 2332211123 3689999999998653
No 69
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.26 E-value=0.019 Score=46.25 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc---eEEeCCEEEEcCChhHHhhc
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVPGIKRL 116 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g---~~~~aD~VVsa~~~~~~~~L 116 (162)
.-+...+++-|.+|++++.|++|.++++ ++ +++||++.....+ .++.++.||+++..-...+|
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~-~~--~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGD-GG--RATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETT-ST--EEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred cccchhhccCCccEEcCcEEEEEeeecc-cc--ceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 3344554444999999999999988632 25 8999998643333 45779999999986544443
No 70
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.25 E-value=0.03 Score=50.34 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
+..|.+.|.+.+++.|++|++++.|++|..+++ | ++.|+......+|+ .+.|+.||+|+.
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG--G--VCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 346888999999999999999999999998753 6 89999763222343 678999999987
No 71
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.24 E-value=0.011 Score=44.76 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
.+.+.+-+.++.++.|.+++++++|+++..+++ + ..|.+. +++.+.||.||.|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~~---~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTTR---DGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEET---TS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEEE---ecceeeeeeEEEeeec
Confidence 345788999999999999999999999999873 3 445554 5678899999999985
No 72
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.24 E-value=0.018 Score=37.76 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=34.3
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~ 91 (162)
.+..+.+.+.+.+++.|+++++|+.|.+|..+++ .+. |+++
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~~~-V~~~ 78 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-----GVE-VTLE 78 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----SEE-EEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-----EEE-EEEe
Confidence 4456788899999999999999999999998873 455 7776
No 73
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.21 E-value=0.037 Score=49.47 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=48.7
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..|...|.+.+++.|++|+.++.+++|..+++ | ++.|+......+|+ .+.|++||+|+.=
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD--G--AVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC--C--eEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 456888999999999999999999999998643 7 89999763222344 5789999999973
No 74
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.18 E-value=0.045 Score=49.67 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
+.|.+.+++.|++|++++.|++|..++ | ++.||......+|+ .+.|+.||.|+.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~---g--~V~GV~~~~~~~g~~~~i~AkaVVLATG 229 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD---G--RARGIVARNLVTGEIERHTADAVVLATG 229 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCEEEECCC
Confidence 667778889999999999999998875 6 89999764222343 688999999987
No 75
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.16 E-value=0.026 Score=51.09 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEecc-CCCCcceEEEEEEEecCCce--EEeCCEEEEcCChhH--HhhcC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDK-AANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG--IKRLL 117 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~-~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~--~~~Ll 117 (162)
..+...+++..+++|++++.+++|++|..++ + + ++++|++....+++ .+.||.||.|+.++. +.+++
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~--g--~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST--G--RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC--C--cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 4678889999999999999999999998863 2 5 67887763211233 589999999999763 55554
No 76
>PRK12839 hypothetical protein; Provisional
Probab=96.12 E-value=0.027 Score=50.40 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
..|+..|.+..++.|++|+++++|++|..+++ | +++||+.... +++ +..++.||.|+.
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~--g--~V~GV~~~~~-~g~~~i~aak~VVLAtG 273 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN--G--RVTGVRVQGP-DGAVTVEATRGVVLATG 273 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC--C--cEEEEEEEeC-CCcEEEEeCCEEEEcCC
Confidence 46889999999999999999999999988643 6 8999976422 343 345689999886
No 77
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.12 E-value=0.04 Score=48.94 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
..+...|.+.+++.|+++++++.|++|..++ | ++.|+......+|+ .+.|+.||.|+.-.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD---G--RVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 3577888998999999999999999998875 6 88898763222453 58899999999853
No 78
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.12 E-value=0.021 Score=47.43 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+++.|++++.+++|++|..++ + .+ .|++. ++ .+.||.||.+++..
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~---~--~~-~v~~~---~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE---L--LV-TVKTT---KG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC---C--eE-EEEeC---CC-EEEeCEEEEecCcc
Confidence 577888889999999999999999998765 3 33 35443 34 78999999988864
No 79
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.10 E-value=0.012 Score=51.28 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCC
Q 031284 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (162)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~ 118 (162)
-+...+.+..++++++.|+++++++.+.++..+.+ | +++.|.+. +|..++||.||..+...-..+++.
T Consensus 252 lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~--G--ev~~V~l~---dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 252 LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD--G--EVSEVKLK---DGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCC--C--cEEEEEec---cCCEeccCeEEEeecccccccccc
Confidence 34567888999999999999999999999988764 8 78888887 899999999999988654433443
No 80
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.09 E-value=0.028 Score=47.97 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=47.2
Q ss_pred eCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+....+..+.+.+.+.+++.|++++++++|++|..++ + ...+++ +++.+.+|.||.|+...
T Consensus 99 p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~---~~~v~~----~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 99 PCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---N---GFGVET----SGGEYEADKVILATGGL 159 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---C---eEEEEE----CCcEEEcCEEEECCCCc
Confidence 3444456789999999999999999999999997654 3 234543 35678999999999863
No 81
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.06 E-value=0.031 Score=49.23 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCC-EEEEcCC
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD-AYVAACD 109 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD-~VVsa~~ 109 (162)
.+...+.+.+.+. |++|+++++|++|..++ + +|+||+...++....+.|+ .||.++.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~---g--~v~Gv~~~~~g~~~~i~A~k~VIlAtG 232 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED---G--RVVGAVVERGGERRRVRARRGVLLAAG 232 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC---C--EEEEEEEEECCcEEEEEeCceEEEeCC
Confidence 4677777777664 99999999999998875 6 8999987543222357886 6888876
No 82
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.05 E-value=0.018 Score=53.42 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=46.3
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++.+.+.+.+.++++|+++++++.|++|.-+ + ++.+|++. +|+.+++|.||.++...
T Consensus 181 d~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~----~--~~~~v~~~---dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 181 DQTAGRLLQRELEQKGLTFLLEKDTVEIVGA----T--KADRIRFK---DGSSLEADLIVMAAGIR 237 (785)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCceEEEEcC----C--ceEEEEEC---CCCEEEcCEEEECCCCC
Confidence 3445667888999999999999999999654 3 46677776 78899999999999853
No 83
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.97 E-value=0.031 Score=46.92 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=44.6
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+..+.+.+.+.+++.|++++++++|++|..++ + . ..+.+. +|+.+++|.||.++..
T Consensus 182 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~--~-~~v~~~---~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 182 PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD---S--G-IRATLD---SGRSIEVDAVIAAAGL 237 (377)
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEccC---C--E-EEEEEc---CCcEEECCEEEECcCC
Confidence 34466778899999999999999999998764 2 2 345555 7889999999999875
No 84
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.96 E-value=0.023 Score=49.16 Aligned_cols=54 Identities=19% Similarity=0.057 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..++..|++.++++|++|+.+++|++|.. + + ...|++. +| .+.||.||.|+...
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~---~~~v~t~---~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G---Q---PAVVRTP---DG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-C---C---ceEEEeC---Cc-EEECCEEEEccccc
Confidence 36789999999999999999999999974 2 2 2345443 44 68999999998864
No 85
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.94 E-value=0.025 Score=52.89 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=46.6
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++...+.+.+.|+++|+++++++.|++|.-+++ + ....+.+. +|+.+++|.||.+++..
T Consensus 186 d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~--~--~~~~v~~~---dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 186 DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV--E--ARKTMRFA---DGSELEVDFIVFSTGIR 244 (847)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCC--C--ceEEEEEC---CCCEEEcCEEEECCCcc
Confidence 344567789999999999999999999976532 2 34456665 78899999999999854
No 86
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.90 E-value=0.024 Score=48.64 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=43.0
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+++.+.+.+.+.|+++|++++++++|+++.-+ .++++ +|+++++|.+|.+...
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----------~v~~~---~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----------EVVLK---DGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----------EEEEC---CCCEEEccEEEEccCC
Confidence 34567888999999999999999999998432 24565 6889999999999774
No 87
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.87 E-value=0.071 Score=47.62 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..+.+.|.+.+++.|+++++++.++++..++ | ++.|+......+++ .+.|+.||+|+.-
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDN---K--KVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 34578889998888999999999999999875 6 89999765222333 5789999999974
No 88
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.85 E-value=0.072 Score=47.60 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
+..+.+.|.+.+++.|++|++++.|.+|..++ | ++.|+......+|+ .+.|+.||.|+.-.
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED---N--QAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 34688899999999999999999999998875 6 78888642211343 58999999999753
No 89
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.85 E-value=0.069 Score=48.13 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=44.2
Q ss_pred cccchHHHHHHHHHc----CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCC
Q 031284 46 DVYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~----Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~ 109 (162)
+..+...|.+.+++. |++|+++++|++|..+++ | ++.||......+| ..+.|+.||.|+.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~--g--rV~GV~~~~~~~g~~~~i~AkaVVLATG 193 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG--N--RARGIIARNLVTGEIETHSADAVILATG 193 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 345666666666543 899999999999998643 6 8999976421134 3688999999996
No 90
>PRK06116 glutathione reductase; Validated
Probab=95.84 E-value=0.037 Score=47.60 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+..+.+.+.+.++++|++++++++|++|..+++ + .+ .+.+. +|+.+++|.||.++..
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--g--~~-~v~~~---~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD--G--SL-TLTLE---DGETLTVDCLIWAIGR 263 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC--c--eE-EEEEc---CCcEEEeCEEEEeeCC
Confidence 345778899999999999999999999987642 3 23 34444 6778999999999864
No 91
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.79 E-value=0.039 Score=44.44 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--------CCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~--------~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.|.+..++.|++++++++|+.+..+++ + ++.|++++.. .+...++|+.||.|+...
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~--g--~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED--P--RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC--C--cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 46788899999999999999999999988653 6 6888876411 123578999999999754
No 92
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.77 E-value=0.045 Score=46.29 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC--ceEEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD--KKVVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~--g~~~~aD~VVsa~~~~~ 112 (162)
.+...+.+.+++.|++++.+++|++|..++ + .+ .+.+..++. +..++||.||.++.+.+
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~--~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG---G--GV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 567888999999999999999999998765 3 33 333331100 23689999999998763
No 93
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.76 E-value=0.051 Score=47.83 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~ 112 (162)
.+.+.+.+.+++.| ++|+++++|++|..+++ + ++ .+.+....+| ..+.||+||.+++.++
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d--g--~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD--G--SW-TVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC--C--CE-EEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 57888999999988 69999999999988653 4 33 3333211124 3689999999998764
No 94
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.70 E-value=0.084 Score=47.43 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
..|...|.+..++.|++++.++.|+++..+++ | ++.|+.+...++|+ .+.|+.||.|+.-
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDAD--G--DVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC--C--eEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 45788888888899999999999999998643 6 78998763222343 5789999999873
No 95
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.67 E-value=0.042 Score=47.01 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=44.1
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++..+.+.+.+.++++|++++++++|++|.-+ + ++..+..+ +..+++|.||.+++..
T Consensus 189 ~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~----~--~~~~v~~~----~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 189 FDKEITDVMEEELRENGVELHLNEFVKSLIGE----D--KVEGVVTD----KGEYEADVVIVATGVK 245 (444)
T ss_pred cCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC----C--cEEEEEeC----CCEEEcCEEEECcCCC
Confidence 44567788889999999999999999999543 3 45555443 5579999999998753
No 96
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.64 E-value=0.089 Score=47.53 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
..|...|.+.+++.|++|+.++.|+++..+++ | ++.|+......+|+ .+.|+.||.|+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED--G--ECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC--C--EEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 46888999999999999999999999988432 6 89998753212343 678999999995
No 97
>PRK06847 hypothetical protein; Provisional
Probab=95.63 E-value=0.048 Score=45.30 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhh-cCCc
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~-Ll~~ 119 (162)
.+.+.|.+.+++.|++|+++++|++|..++ + .+ .+.+. +|+.+.+|.||.|...+. ..+ +++.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~ad~vI~AdG~~s~~r~~l~~~ 172 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD---D--GV-TVTFS---DGTTGRYDLVVGADGLYSKVRSLVFPD 172 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---C--EE-EEEEc---CCCEEEcCEEEECcCCCcchhhHhcCC
Confidence 456788888888999999999999998765 3 32 44454 678899999999998763 443 4343
No 98
>PRK08275 putative oxidoreductase; Provisional
Probab=95.58 E-value=0.069 Score=47.49 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
..+.+.|.+.+++.|++|++++.|++|..+++ | ++.|+......+|+ .+.|+.||.|+.-.
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD--G--RVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC--C--eEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 35788999999999999999999999988732 6 78898753222343 57899999998753
No 99
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.58 E-value=0.05 Score=47.74 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=46.6
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+..+.+.+.+.|+++|+++++++.|++|..+++ + ...+.+. +|+.+++|.||.++...
T Consensus 229 ~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~--~---~~~v~~~---~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 229 FDSTLRKELTKQLRANGINIMTNENPAKVTLNAD--G---SKHVTFE---SGKTLDVDVVMMAIGRV 287 (486)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC--c---eEEEEEc---CCCEEEcCEEEEeeCCC
Confidence 3456788999999999999999999999986542 3 3345554 57789999999988743
No 100
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.53 E-value=0.05 Score=45.18 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+...+.+.+.+.|++++.+++|++|..++ + .+ .|+++ +| .+.||.||.|+....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~--~~-~v~~~---~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG---D--GV-TVTTA---DG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC---C--eE-EEEeC---CC-EEEeeEEEEecCcch
Confidence 3566778888889999999999999998875 3 33 45444 44 789999999998753
No 101
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=95.52 E-value=0.047 Score=46.85 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+.+.+.+.+.++++. .+| ...+|++|..++ + ++.||++. +|+.+.+|.||.|+.+
T Consensus 95 ~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~---~--~v~GV~~~---~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTI-IQGEVTDLIVEN---G--KVKGVVTK---DGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEE-EES-EEEEEECT---T--EEEEEEET---TSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHHhcCCCeEE-EEcccceEEecC---C--eEEEEEeC---CCCEEecCEEEEeccc
Confidence 456778889999955 555 588999999987 5 89999887 8999999999999987
No 102
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.51 E-value=0.071 Score=47.26 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=47.5
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..+.+.|.+.+++.|++|++++.|++|..+++ + ++.|+......+|+ .+.|+.||.|+.-
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~--~--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN--R--EVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC--c--EEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 346888899999999999999999999988753 4 58888653212343 5889999999974
No 103
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.51 E-value=0.076 Score=42.07 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=45.9
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
.+-+.+.+.+++.|++++++++|+++..++ + ++ .+.+. ++++.++||.||.+...+ .+.+.+
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~---~--~~-~~~~~--~~~~~~~a~~vv~a~G~~s~~~~~~ 154 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD---D--RV-VVIVR--GGEGTVTAKIVIGADGSRSIVAKKL 154 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC---C--EE-EEEEc--CccEEEEeCEEEECCCcchHHHHhc
Confidence 466788888899999999999999998876 3 33 23232 135689999999999875 354443
No 104
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.44 E-value=0.073 Score=45.80 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=44.0
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
...+.+.+.+.+++.|++++++++|++|..++ + ++. +.+. +| +.+++|.||.++...
T Consensus 210 ~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v~-v~~~---~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 210 DAEVSKVVAKALKKKGVKILTNTKVTAVEKND---D--QVV-YENK---GGETETLTGEKVLVAVGRK 268 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--EEE-EEEe---CCcEEEEEeCEEEEecCCc
Confidence 34577888999999999999999999998765 3 342 4333 34 579999999998753
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.44 E-value=0.11 Score=45.33 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.|.+.+++ .|++|+.+++|++|..++ + ++.|+.+...+....+.|+.||.|+.-.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~---g--~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET---G--RVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC---C--EEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 4678889999988 699999999999998865 5 7888876522111468999999999854
No 106
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.42 E-value=0.0052 Score=50.37 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=63.9
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCchh--hcchhhhh
Q 031284 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSW--REMKFFNN 129 (162)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~~~--~~~~~~~~ 129 (162)
+++|. -...-+|.++++|+++...+| ...+.++ +.++...+|.||.++|.+.+..||.... .+..+...
T Consensus 109 alak~-LAtdL~V~~~~rVt~v~~~~~------~W~l~~~--~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~ 179 (331)
T COG3380 109 ALAKF-LATDLTVVLETRVTEVARTDN------DWTLHTD--DGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAA 179 (331)
T ss_pred HHHHH-HhccchhhhhhhhhhheecCC------eeEEEec--CCCcccccceEEEecCCCcchhhcCcccccchHHHHHh
Confidence 45553 456789999999999998752 3444442 2345678999999999876666774321 23446778
Q ss_pred hhcCCCCCEEEEEEEeCcccC
Q 031284 130 IYALVGVPVVTVQLRYNGWVT 150 (162)
Q Consensus 130 l~~l~~~~~~~v~l~~d~~~~ 150 (162)
+....+-|++++.+.|..++.
T Consensus 180 ~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 180 LADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred hccceehhHHHHHhcCCccCC
Confidence 888888888888888876654
No 107
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.42 E-value=0.088 Score=47.30 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..|...|.+..++.|+++++++.|++|..+++ | ++.|+......+|+ .+.|+.||.|+.-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD--G--AVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC--C--EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 446888899888899999999999999998643 7 89999763212343 5789999999873
No 108
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.42 E-value=0.056 Score=45.40 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
.+.+.|.+.+++.|++++.+++|++++.++ + .+ .++++ +|+.+.||.||.|...+ .+.+.+
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA---D--RV-RLRLD---DGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC---C--eE-EEEEC---CCCEEEeCEEEEecCCCchHHHhh
Confidence 467788888999999999999999998775 3 33 35444 67789999999999876 355554
No 109
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.42 E-value=0.068 Score=46.12 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=43.9
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc---eEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g---~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.++++|++++++++|++|..++ + .+ .+.+. ++ +.+++|.||.++...
T Consensus 212 ~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~--~v-~v~~~---~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 212 DKEISKLAERALKKRGIKIKTGAKAKKVEQTD---D--GV-TVTLE---DGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--EE-EEEEE---eCCeeEEEEeCEEEEeeCCc
Confidence 34677889999999999999999999997664 2 23 34444 33 679999999998754
No 110
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.39 E-value=0.057 Score=46.42 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=43.6
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
+-+.|.+..++.|++|+.+++|++|..++ + ++.++. . +|+.+.||.||.|.....
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~---g--~v~~v~-~---~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD---G--KVVGVE-A---DGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC---C--EEEEEE-c---CCcEEECCEEEEEeCCCH
Confidence 44568888889999999999999998775 5 565553 3 466899999999988753
No 111
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.35 E-value=0.12 Score=46.93 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=47.6
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
+..|.+.|.+..++.|++|+.++.+.+|..+++ | ++.|+......+|+ .+.|+.||.|+.
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD--G--ACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC--C--EEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 345788999988999999999999999988743 6 89998764212343 678999999997
No 112
>PRK10015 oxidoreductase; Provisional
Probab=95.33 E-value=0.084 Score=45.48 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=43.8
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
+-+.|.+.+++.|++++.+++|++|..++ + ++.++.. +++.+.||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~---~--~v~~v~~----~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG---N--KVTGVQA----GDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC---C--EEEEEEe----CCeEEECCEEEEccCcch
Confidence 44457888889999999999999998775 4 6766653 356899999999988753
No 113
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.33 E-value=0.069 Score=44.81 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
.+.+.|.+.+.+.|++++.+++|+++..++ + .+ .+++. +|+.+.||.||.|...+ .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD---E--GV-TVTLS---DGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---C--EE-EEEEC---CCCEEEeCEEEEcCCCChHHHHHcC
Confidence 467888888888999999999999998775 3 33 35444 67789999999998876 3555443
No 114
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=95.32 E-value=0.068 Score=45.12 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCCc
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPS 119 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~~ 119 (162)
+.-...++.+++++||.++-|.+|..+...+. ++ ..++|+++ +|..+.|+..|.++.++..+ |||.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e-~~--~~v~V~Tt---~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDE-EG--NHVSVQTT---DGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccC-CC--ceeEEEec---cCCeeecceEEEEecHHHHh-hcCc
Confidence 45567899999999999999999999986532 24 45577666 78899999999999988764 6764
No 115
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.31 E-value=0.085 Score=45.56 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=44.3
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.+++.|++++++++|++|..++ + ...+.+..+++++.+++|.||.++...
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~---~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 206 EPEISAAVEEALAEEGIEVVTSAQVKAVSVRG---G---GKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC---C---EEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 34577888999999999999999999998764 2 223444322234689999999998743
No 116
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.31 E-value=0.04 Score=49.98 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+.+.+.+.+++ |++++.+++|++|..++ + ++. |.++ +|..++||.||.++....
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~---~--~~~-v~t~---~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERED---D--GWQ-LDFA---GGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeC---C--EEE-EEEC---CCcEEECCEEEECCCCCc
Confidence 4678899999999 99999999999998875 4 443 5444 566778999999998764
No 117
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.29 E-value=0.063 Score=47.33 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc-eEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g-~~~~aD~VVsa~~~ 110 (162)
..+.+.|.+.++++ |++++.+++|++|..++ | ++.|+.+..+ ++ ..+.|+.||.|+.=
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~~-~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDD---G--AVAGVLAATA-GGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecC---C--EEEEEEEEeC-CeEEEEECCEEEEcCCC
Confidence 46888898888875 89999999999998765 6 7889876521 22 25889999999874
No 118
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.25 E-value=0.073 Score=45.09 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.++++|++++++++|++|.. + + .+ .+.+. +|+.+++|.||.++...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~---~--~~-~v~l~---~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G---E--KV-ELTLQ---SGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C---C--EE-EEEEC---CCCEEECCEEEECCCCC
Confidence 4556688888999999999999999965 2 2 22 35555 68889999999998753
No 119
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.23 E-value=0.084 Score=45.66 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=45.2
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc-eEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g-~~~~aD~VVsa~~~~ 111 (162)
++..+.+.+.+.++++|+++++++.|++|.-+++ + . ..+++. +| +.+++|.||.++...
T Consensus 205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~--~--~-~~v~~~---~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE--G--K-LVIHFE---DGKSIDDVDELIWAIGRK 264 (450)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC--c--e-EEEEEC---CCcEEEEcCEEEEeeCCC
Confidence 3456788899999999999999999999976532 2 2 234444 46 579999999998854
No 120
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.23 E-value=0.068 Score=45.59 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|++++++++|.+|..+ + .+ +++. +|+.+++|.+|.+++..
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~--~~--v~~~---~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE----E--RV--KVFT---SGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecC----C--CE--EEEc---CCCEEEeCEEEECCCcc
Confidence 456777888999999999999999999654 3 32 3444 67789999999998753
No 121
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.16 E-value=0.079 Score=45.65 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=45.4
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++..+.+.+.+.++++|++++++++|++|..++ + .+ .+++. +|+.+++|.||.++...
T Consensus 214 ~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 214 LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGD---D--GV-IVHLK---SGKKIKADCLLYANGRT 271 (461)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC---C--eE-EEEEC---CCCEEEeCEEEEeecCC
Confidence 345678899999999999999999999998654 2 22 24343 57789999999998854
No 122
>PLN02507 glutathione reductase
Probab=95.16 E-value=0.086 Score=46.35 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=45.0
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++..+.+.+.+.+++.|++++++++|+++..++ + .+ .+... +|+.+++|.|+.++...
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~---~--~~-~v~~~---~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE---G--GI-KVITD---HGEEFVADVVLFATGRA 299 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--eE-EEEEC---CCcEEEcCEEEEeecCC
Confidence 445677888889999999999999999997654 2 22 34333 57789999999998754
No 123
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.15 E-value=0.14 Score=45.63 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=66.1
Q ss_pred eeeEeCCCCc-ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChhH-
Q 031284 37 LLRMLKGSPD-VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG- 112 (162)
Q Consensus 37 ~~~~~~g~~~-~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~- 112 (162)
.+.|+.+-.. ..|+-..++...++|+++++.++|+++..++ .++||.+.-..+|+ .+.|+.||.|+.+..
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~------~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG------GVWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC------CEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 4555554432 3577788888899999999999999999986 37899876222233 588999999999764
Q ss_pred -HhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCcccC
Q 031284 113 -IKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVT 150 (162)
Q Consensus 113 -~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~~ 150 (162)
+.+......... ..+ .|+-.+|+.+++.++
T Consensus 227 ~i~~~~~~~~~~~---~~v-----r~skGsHlVv~~~~~ 257 (532)
T COG0578 227 EILEMAGLEQSPH---IGV-----RPSKGSHLVVDKKFP 257 (532)
T ss_pred HHHHhhcccCCCC---ccc-----eeccceEEEecccCC
Confidence 444432111000 011 145667888888443
No 124
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.15 E-value=0.1 Score=46.36 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe----cCCc-eEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----ATDK-KVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~----~~~g-~~~~aD~VVsa~~~~ 111 (162)
..+...|.+.+++.|++++.++.|.+|..+++ | ++.|+.+.. .+++ ..+.|+.||.|+.-.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT--G--AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC--C--eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 45888999999999999999999999988753 6 788987641 1133 468999999999753
No 125
>PRK07045 putative monooxygenase; Reviewed
Probab=95.14 E-value=0.26 Score=41.36 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=45.3
Q ss_pred chHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhh
Q 031284 49 LSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR 115 (162)
Q Consensus 49 l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~ 115 (162)
|-+.|.+.+.+ .|++++++++|+.|+.+++ + .++.|+++ +|+++.+|.||.+-..+. ..+
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~--~~~~v~~~---~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD--G--TVTSVTLS---DGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC--C--cEEEEEeC---CCCEEECCEEEECCCCChHHHH
Confidence 45566666654 5899999999999988753 4 34566665 678899999999988764 555
No 126
>PRK06370 mercuric reductase; Validated
Probab=95.11 E-value=0.12 Score=44.78 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|++++++++|.+|..+++ + + .+.+..++++..+++|.||.++...
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~---~-~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGD--G---I-AVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E---E-EEEEEeCCCceEEEeCEEEECcCCC
Confidence 45678889999999999999999999987642 2 2 3333222245679999999999754
No 127
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.08 E-value=0.13 Score=46.06 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccC-CCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKA-ANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~-~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
..+.+.|.+.+++.|++|+.++.|.+|..+++ ++| ++.|+......+|+ .+.|+.||.|+.-.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP--VAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC--cEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 46788999999999999999999999987640 015 78898763212344 57899999998743
No 128
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.05 E-value=0.12 Score=46.17 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=46.8
Q ss_pred cccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..+.+.|.+.++++ |++|++++.|++|..+++ +| ++.|+.... +|+ .+.|+.||.|+.=
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~-~g--~v~Gv~~~~--~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPE-TG--RCQGISLLY--QGQITWLRAGAVILATGG 195 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCC-CC--EEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence 456888999988765 999999999999988631 26 789987643 343 4789999999874
No 129
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=94.98 E-value=0.12 Score=45.60 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~ 112 (162)
..++..+++..+++|++++.+++|++|..++ + . .++++....+| ..+.||.||.|+.+..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~---~--~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN---G--L-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---C--E-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4566777888899999999999999998765 3 3 45655421123 3689999999999753
No 130
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.96 E-value=0.13 Score=44.69 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=43.9
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE--ecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS--KATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~--~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.+++.|++++++++|++|..+++ + + .+.+. .+++++.+++|.||.++...
T Consensus 214 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~---v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 214 DTETAKTLQKALTKQGMKFKLGSKVTGATAGAD--G---V-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCC--e---E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 345778899999999999999999999976542 2 2 23232 12234679999999999854
No 131
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.94 E-value=0.11 Score=43.86 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=47.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCCc
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLPS 119 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~~ 119 (162)
.+.+.|.+.+++.|++++.+++|++++.++ + .+ .|.+. +|+.++||.||.|-..+ ...+++..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG---D--DW-LLTLA---DGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC---C--eE-EEEEC---CCCEEEeCEEEEecCCCchhHHhcCC
Confidence 345677888888999999999999998765 2 23 34444 67789999999999876 46666543
No 132
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.87 E-value=0.12 Score=44.84 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.|+++|++++++++|++|..++ + .+ .+.+. +|+.+++|.||.++...
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~~-~v~~~---~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG---D--GV-VVTLT---DGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC---C--EE-EEEEC---CCcEEEecEEEEeecCC
Confidence 4567788899999999999999999997654 3 33 24444 67789999999997743
No 133
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.84 E-value=0.11 Score=44.73 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=44.1
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++.+.+.+.+.+++.|++++++++|++|..+++ + ..+.+. +|+.+++|.||.++...
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~----~~v~~~---~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD--G----LKVTLS---HGEEIVADVVLFATGRS 262 (446)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e----EEEEEc---CCcEeecCEEEEeeCCC
Confidence 455677888899999999999999999976542 2 234444 57789999999998753
No 134
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.80 E-value=0.15 Score=44.24 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=43.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-ecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.++++|++|+++++|+++.-++ + .+ .+++. .+++.+.+++|.||.++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~--~~-~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG---S--KV-TVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC---C--eE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence 4577889999999999999999999997654 3 22 33332 12122479999999998753
No 135
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.78 E-value=0.12 Score=45.30 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
..+...+++..+++|++++.+++|++|..++ + ..++++..+ .| ..+.||.||.|+.+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~-~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG---G---LWRVETRDA-DGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC---C---EEEEEEEeC-CCCEEEEEecEEEECCCcc
Confidence 3556677788899999999999999998875 3 345655421 12 358999999999975
No 136
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.76 E-value=0.17 Score=43.96 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=45.8
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
...+.+.+.+.+++.|++++.+ .|+.|..++ + ++.|+... ++.+.||.||.|+.-.
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~---g--~v~Gv~~~----g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN---G--KAYGVFLD----GELLKFDATVIATGGF 174 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC---C--EEEEEEEC----CEEEEeCeEEECCCcC
Confidence 4468899999999999999876 899987764 6 78888653 6789999999999743
No 137
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.71 E-value=0.14 Score=44.35 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=43.3
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.++++|++++++++|++|..+++ + ++..+... +| +.+++|.||.++...
T Consensus 220 ~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~--~--~~~~~~~~---~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 220 DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKD--G--GVLIVAEH---NGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC--C--CEEEEEEe---CCceEEEEeCEEEEeeCCc
Confidence 345778888999999999999999999976211 2 33333333 34 468999999999854
No 138
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.71 E-value=0.17 Score=45.73 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
.+...+.+.++++| ++|+.+++|.+|..++ + ++.|+......+++ .+.|+.||.|+.-.
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD---N--RIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 46677878888876 9999999999998765 5 78888642211343 68999999999843
No 139
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.71 E-value=0.16 Score=46.29 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
.+...|.+.+++.|++|+.++.|.+|..++ | ++.|+.+....+|+ .+.|+.||.|+.-
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG---K--RCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 456678888889999999999999999875 6 88998765322454 4689999999974
No 140
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.68 E-value=0.14 Score=42.41 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
.+.+.|.+.+++.| ++|+.+++|++|..++ + .+ .+.++ +|+.+.+|.||.+-..+ .+.+.+
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~~~~vi~adG~~S~vr~~l 169 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS---D--HV-ELTLD---DGQQLRARLLVGADGANSKVRQLA 169 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC---C--ee-EEEEC---CCCEEEeeEEEEeCCCCCHHHHHc
Confidence 46677888888888 9999999999998775 3 33 35444 67789999999987765 344444
No 141
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.66 E-value=0.11 Score=43.17 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcCC
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
.+.+.|.+.+.+. |++++.+++|++|..++ + .+ .+.+. +|+.+.||.||.|...+. +.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ---D--YV-RVTLD---NGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---C--eE-EEEEC---CCCEEEeeEEEEecCCChHHHHHcC
Confidence 3677788888874 99999999999998765 3 33 34444 677899999999999764 555543
No 142
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.58 E-value=0.28 Score=44.43 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=46.7
Q ss_pred cccchHHHHHHHHHc--------C-----cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDK--------G-----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~--------G-----g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..+.+.|.+.+++. | ++|+.++.|++|..++ | ++.|+......+|+ .+.|+.||.|+.-
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG---G--RIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 346788898888877 7 9999999999998865 6 78888653222343 5889999999984
No 143
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.55 E-value=0.21 Score=40.16 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--------CCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~--------~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.|.+...+.|++++.++.|+++..+++ .. ++.||+++.. .+...++|+.||.|+...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~-~~--~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDD-TV--GVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCC-CC--ceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 5778888899999999999999999998752 12 4788876411 023478999999998743
No 144
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.53 E-value=0.17 Score=44.94 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=42.1
Q ss_pred cchHHHHHHHHH---c-CcEEEcCceeeEEEeccCCCCcceEEEEEEE--ec------------CCc-eEEeCCEEEEcC
Q 031284 48 YLSGPIRKYITD---K-GGRFHLRWGCREILYDKAANAETYVKGLAMS--KA------------TDK-KVVQADAYVAAC 108 (162)
Q Consensus 48 ~l~~~l~~~l~~---~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~--~~------------~~g-~~~~aD~VVsa~ 108 (162)
.++++|.+.+++ . |++|++++++++|..++ | +|+||+.. .+ .++ ..+.|+.||+|+
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~---g--~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILAT 223 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD---G--AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTS 223 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC---C--EEEEEEEEecccccccccccccccccceEEEecCEEEEeC
Confidence 477788777653 3 59999999999999874 6 89999752 11 012 367899999998
Q ss_pred C
Q 031284 109 D 109 (162)
Q Consensus 109 ~ 109 (162)
.
T Consensus 224 G 224 (549)
T PRK12834 224 G 224 (549)
T ss_pred C
Confidence 6
No 145
>PRK10262 thioredoxin reductase; Provisional
Probab=94.51 E-value=0.12 Score=42.33 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC---CceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---DKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~---~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+++.|+++++++.|++|.-++ + ++.++++.... +.+.+++|.||.++...
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~---~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ---M--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC---c--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 356778888899999999999999997654 3 46677765211 22479999999998753
No 146
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.50 E-value=0.18 Score=44.50 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=42.1
Q ss_pred cchHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~ 112 (162)
.+.+.+.+.+++ .|++++++++|+.|..+++ + .+ .+.+....+++ .++||.||.++..+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d--~--~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD--G--GW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC--C--CE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 577888888865 5999999999999987732 4 33 23221111342 689999999998764
No 147
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.46 E-value=0.11 Score=43.13 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.++++|++++++++|++|. + + ++++. +|+.+++|.||.+++..
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~---~-----~v~~~---~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D---G-----ALILA---DGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C---C-----eEEeC---CCCEEecCEEEEccCCC
Confidence 4467788899999999999999999983 2 2 34555 68899999999999843
No 148
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.45 E-value=0.15 Score=44.32 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+.+-|.+..+++|++++.++ |+++..+++ | .+++|++. +|++++||.||=|.....
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~--g--~i~~v~~~---~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDED--G--RITAVRLD---DGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TT--S--EEEEEEET---TSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC--C--CEEEEEEC---CCCEEEEeEEEECCCccc
Confidence 4577889999999999999885 888888764 7 78899887 788999999999988764
No 149
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.42 E-value=0.33 Score=43.44 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=45.6
Q ss_pred cchHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
.+.+.|.+.+++ .|++++.++.|.+|..++ + ++.|+......+|+ .+.|+.||.|+.-.
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVEN---G--VFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 477888888776 699999999999998875 6 78888653222343 58899999998743
No 150
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.42 E-value=0.21 Score=43.78 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEE--ecCCceEEeCCEEEEcCChhHHh
Q 031284 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMS--KATDKKVVQADAYVAACDVPGIK 114 (162)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~--~~~~g~~~~aD~VVsa~~~~~~~ 114 (162)
..|.+.|.+.++++ |+++++|++|+.|...++ | + +.|.+. .+++...+.|+.|+..+.-+++.
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g--~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD--G--R-WEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC--C--C-EEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 45888999999998 999999999999999875 5 2 334332 22345689999999999877654
No 151
>PRK06834 hypothetical protein; Provisional
Probab=94.39 E-value=0.15 Score=44.71 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
.+-+.|.+.+++.|++|+.+++|++|..+++ .+ .+++. +|+.++||.||.+...+. ..+.+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-----~v-~v~~~---~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDT-----GV-DVELS---DGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-----eE-EEEEC---CCCEEEeCEEEEecCCCCCcHhhcC
Confidence 3456677888889999999999999988763 23 34443 567899999999988763 555553
No 152
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.36 E-value=0.042 Score=50.37 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+.|.+.++++|.++++++.+++|.-+ + ++.+++.+ +|..++||.||.++.+
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g~----~--~~~~vr~~---DG~~i~ad~VV~a~GI 241 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVGE----D--KVEGVRFA---DGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhcC----c--ceeeEeec---CCCcccceeEEEeccc
Confidence 45788899999999999999999774 3 68899988 8999999999999985
No 153
>PRK06185 hypothetical protein; Provisional
Probab=94.32 E-value=0.32 Score=40.93 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc-eEEeCCEEEEcCChhH-HhhcCC
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g-~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
.+.+.|.+.+++. |++++.+++|+++..++ + ++.+|.+..+ +| ..++||.||.|-..+. +.+.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~---~--~v~~v~~~~~-~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG---G--RVTGVRARTP-DGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC---C--EEEEEEEEcC-CCcEEEEeCEEEECCCCchHHHHHcC
Confidence 3556677777664 89999999999998876 4 6777765432 45 3799999999998764 555554
No 154
>PRK06184 hypothetical protein; Provisional
Probab=94.26 E-value=0.29 Score=42.71 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=46.6
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcCC
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
+-+.|.+.+++.|++|+++++|++|+.+++ .++ +.+...++++.++||.||.|-..+. ..+.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD-----GVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC-----cEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 345678888889999999999999988763 332 3332222567899999999988774 555554
No 155
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.25 E-value=0.2 Score=39.84 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|+++++ ++|++|..++ + . ..+.+. +++.+.+|.+|.|+...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~--~-~~v~~~---~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---R--P-FKVKTG---DGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---C--e-eEEEeC---CCCEEEeCEEEECCCCC
Confidence 45778899999999999999 9999998765 2 2 234444 56789999999999864
No 156
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.24 E-value=0.22 Score=43.05 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|++++++++|++|..++ + . +.+..++..+.+++|.||.++...
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~---~--~---v~~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK---K--Q---ALFEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC---C--E---EEEEECCceEEEEeCEEEEecCCc
Confidence 4577888999999999999999999997553 2 2 223222112468999999998854
No 157
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.16 E-value=0.088 Score=46.44 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=37.0
Q ss_pred HHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC-ceEEeCCEEEEcCCh
Q 031284 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD-KKVVQADAYVAACDV 110 (162)
Q Consensus 58 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~-g~~~~aD~VVsa~~~ 110 (162)
++.|.+|++++.|++|.+++ + +++||++...+. ..++.++.||.++..
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~---~--ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG---N--RATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC---C--eEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 35679999999999999986 6 899998753211 124689999999985
No 158
>PRK14694 putative mercuric reductase; Provisional
Probab=94.16 E-value=0.19 Score=43.55 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=43.0
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.+++.|++++++++|++|..++ + .+ .+... ++.+++|.||.++...
T Consensus 217 ~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~---~--~~-~v~~~----~~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 217 DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG---R--EF-ILETN----AGTLRAEQLLVATGRT 272 (468)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--EE-EEEEC----CCEEEeCEEEEccCCC
Confidence 34678899999999999999999999997664 3 22 23332 4469999999998754
No 159
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.05 E-value=0.24 Score=43.07 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.++++|++++++++|++|..++ + .+ .+.+. +++| +.+++|.|+.++...
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v-~v~~~-~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG---K--GV-SVAYT-DADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC---C--EE-EEEEE-eCCCceeEEEcCEEEEccCCc
Confidence 4577888999999999999999999998664 3 33 34433 1123 478999999998753
No 160
>PTZ00052 thioredoxin reductase; Provisional
Probab=94.00 E-value=0.22 Score=43.71 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=45.2
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
++..+.+.+.+.|+++|+++++++.|.++.-.+ + .+ .+.+. +|+.+++|.|+.++...
T Consensus 220 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~---~--~~-~v~~~---~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 220 FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD---D--KI-KVLFS---DGTTELFDTVLYATGRK 277 (499)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC---C--eE-EEEEC---CCCEEEcCEEEEeeCCC
Confidence 344577889999999999999999999997654 2 22 34444 67788999999999854
No 161
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.97 E-value=1.1 Score=38.89 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cCC-----------ceEEeCCEEEEcCCh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATD-----------KKVVQADAYVAACDV 110 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~------~~~-----------g~~~~aD~VVsa~~~ 110 (162)
....+.+++.|+++++++.+++|.-+++ | ++++|++.. +.+ ...+++|.||.++..
T Consensus 313 ~~~~~~l~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 313 VEEIAHAEEEGVKFHFLCQPVEIIGDEE--G--NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHHHHhCCCEEEeccCcEEEEEcCC--C--eEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 3445678899999999999999976543 6 677776641 111 236899999999975
No 162
>PTZ00058 glutathione reductase; Provisional
Probab=93.96 E-value=0.25 Score=44.21 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=43.7
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.++.+.+.+.+.++++|+++++++.|.+|.-+++ + ++. +... .+++.+++|.|+.++...
T Consensus 276 ~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~--~--~v~-v~~~--~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 276 FDETIINELENDMKKNNINIITHANVEEIEKVKE--K--NLT-IYLS--DGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--C--cEE-EEEC--CCCEEEECCEEEECcCCC
Confidence 3456788899999999999999999999976532 2 222 2222 134579999999998743
No 163
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.94 E-value=0.3 Score=38.86 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=42.5
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCceEEeCCEEEEcCChh
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~--~~~g~~~~aD~VVsa~~~~ 111 (162)
....+.+.++++ |++++++++|++|..+ + ++.++++.. +++++.+++|.+|.+++..
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~----~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGD----N--KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEcc----C--cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 456678888888 9999999999999754 3 455665531 2234679999999998853
No 164
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=93.90 E-value=0.25 Score=42.57 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.9
Q ss_pred eCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE--ecCCceEEeCCEEEEcCCh
Q 031284 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS--KATDKKVVQADAYVAACDV 110 (162)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~--~~~~g~~~~aD~VVsa~~~ 110 (162)
..+.++..+.+...+.|+.+|.+++++++|..+..+++ | .+ -|.+. +++..+++++|....++.-
T Consensus 246 i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d--g--~v-~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 246 IGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD--G--PV-EIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred hccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC--C--ce-EEEEEecCCCceeEEEeeEEEEEccC
Confidence 34557778999999999999999999999999999875 6 34 33333 3333468999998777763
No 165
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.85 E-value=0.31 Score=41.80 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=41.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
..+.+.+.+.++++|++++++++|++|..++ + ++ .+ .. +|+.+++|.||.++..
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~---~--~v-~v-~~---~g~~i~~D~viva~G~ 251 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG---D--QV-LV-VT---EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC---C--EE-EE-EE---CCeEEEcCEEEEeeCC
Confidence 4566777888999999999999999997654 3 22 22 22 4678999999998764
No 166
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=93.79 E-value=0.26 Score=44.03 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCceEEeCCEEEEcCC-hhHHhhcCC
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACD-VPGIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~--~~~g~~~~aD~VVsa~~-~~~~~~Ll~ 118 (162)
.+.+.+.+.+ +.| .+|++|+.|.+|..+.+..+ +|++|.+.. +++...+.|+.||.|+. +++.+-||-
T Consensus 215 ~~~~~~~~~~-~~~n~~l~~~a~v~~i~~d~~~~~--~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 215 VFDLQPNDDA-PSERFTLLTNHRCTRLVRNETNES--EIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred chhhhhhhhc-cCCCEEEEcCCEEEEEEeCCCCCc--eeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 3444444444 455 89999999999999853113 688887652 22334588999999998 455544544
No 167
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.78 E-value=0.24 Score=39.96 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH-HhhcCCc
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG-IKRLLPS 119 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~-~~~Ll~~ 119 (162)
.+-+.|.+.+++.|++|+++++|+.+..+.+ .++..... ..+| ++++||.||-|=..+. +.+.+..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-----~~~~~~~~-~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDD-----GVTVVVRD-GEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETT-----EEEEEEEE-TCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccccc-----cccccccc-ccCCceeEEEEeeeecccCcccchhhhccc
Confidence 4677788888999999999999999988763 44433222 2123 3789999999988874 6665553
No 168
>PRK07190 hypothetical protein; Provisional
Probab=93.72 E-value=0.32 Score=42.67 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=45.2
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcCC
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
+-+.|.+.+++.|++|+++++|++|..+++ .+. +.+. +|+.++||.||.+-..+. ..+.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~-----~v~-v~~~---~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA-----GCL-TTLS---NGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-----eeE-EEEC---CCcEEEeCEEEECCCCCHHHHHHcC
Confidence 334566778889999999999999988763 332 2333 577899999999998764 555544
No 169
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.71 E-value=0.36 Score=41.74 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe----------------cCCceEEeCCEEEEcCChh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----------------ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~----------------~~~g~~~~aD~VVsa~~~~ 111 (162)
....+.+++.|+++++++.|.+|.-++ + ++++|++.. +++++++++|.||.++...
T Consensus 315 ~~~~~~~~~~GV~i~~~~~v~~i~~~~---~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 315 EEEVEHAKEEGVEFEWLAAPVEILGDE---G--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred HHHHHHHHHCCCEEEecCCcEEEEecC---C--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 335677889999999999999997664 3 445665431 1234579999999999853
No 170
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.68 E-value=0.49 Score=41.97 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEeccC---CCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKA---ANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~---~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
..+...|.+.++++ |++|+.++.|.++..+++ +++ ++.|+......+|+ .+.|+.||.|+.-
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 205 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR--RVVGAYVLNRNKERVETIRAKFVVLATGG 205 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC--EEEEEEEEECCCCcEEEEecCeEEECCCC
Confidence 35777888877775 899999999999987530 015 78998764222343 5889999999974
No 171
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.67 E-value=0.16 Score=37.52 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=55.2
Q ss_pred HhCCCCCccccHHHHH--HHHHHHHhccc-------cceeeEeCCCCcccchHHHHHHHHHc--CcEEE-cCceeeEEEe
Q 031284 8 ALGFIDCDNISARCML--TIFALFATKTE-------ASLLRMLKGSPDVYLSGPIRKYITDK--GGRFH-LRWGCREILY 75 (162)
Q Consensus 8 ~~~~~~~~~~Sa~~~~--~~l~~~~~~~~-------~~~~~~~~g~~~~~l~~~l~~~l~~~--Gg~i~-~~~~V~~I~~ 75 (162)
.++|.+.+..|+..=- .-|...+.... ...--.++.-+++.|.+.+.+.++.. |++|. .+.+|+.|..
T Consensus 50 ~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~ 129 (156)
T PF13454_consen 50 HLLNTPADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR 129 (156)
T ss_pred HhhcccccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE
Confidence 4577777777664321 12333222111 11222244445566666666666554 66654 6789999999
Q ss_pred ccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 76 DKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 76 ~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
.++ + ..+.+. +|..+.+|+||+++.
T Consensus 130 ~~~--~----~~v~~~---~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 130 DDD--G----YRVVTA---DGQSIRADAVVLATG 154 (156)
T ss_pred cCC--c----EEEEEC---CCCEEEeCEEEECCC
Confidence 873 3 234444 788999999999975
No 172
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.64 E-value=0.17 Score=41.89 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
.+...+.+.+.++ |++++.+++|.+|. . + .|++. +| .+.||.||.|+....
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~--~---~-----~v~t~---~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVE--T---G-----TVRTS---RG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEe--c---C-----eEEeC---CC-cEEeCEEEECCCCCh
Confidence 5677888888876 99999999999994 2 2 34444 44 468999999998754
No 173
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.62 E-value=0.21 Score=43.04 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+..+.+.+.+.++++|++++++++|++|. + . .+++. +|+.+++|.|+.+++.
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~---~-----~v~~~---~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAIN--G---N-----EVTFK---SGKVEHYDMIIEGVGT 239 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C---C-----EEEEC---CCCEEEeCEEEECcCC
Confidence 44577889999999999999999999984 2 2 24454 5778999999999874
No 174
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.58 E-value=0.72 Score=43.99 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-cCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-~~~g~~~~aD~VVsa~~~~ 111 (162)
.+...+.+.++++|+++++++.|++|.-+ + ++.+|++.. +++++.+++|.|+.+....
T Consensus 352 ~~~~~l~~~L~~~GV~i~~~~~v~~i~g~----~--~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 352 DVSPEARAEARELGIEVLTGHVVAATEGG----K--RVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred chhHHHHHHHHHcCCEEEcCCeEEEEecC----C--cEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 34567788899999999999999999644 3 566777652 3356789999999998753
No 175
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.56 E-value=0.6 Score=39.46 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=44.5
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
+-+.|.+.+.+. |++++++++|++|..+++ . ..|.+. +|+.++||.||.|-..+ .+.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-----~-~~v~~~---~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGES-----E-AWLTLD---NGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-----e-EEEEEC---CCCEEEeCEEEEeCCCCChhHHHcC
Confidence 345566666664 799999999999987752 2 245555 78899999999999876 3555544
No 176
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.56 E-value=0.22 Score=43.90 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
.+.+.|.+.++ .|++|+.++.|++|..++ + ++.|+..... +|+ .+.|+.||.|+.-
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIEN---G--RCIGVLTKDS-EGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeecC---C--EEEEEEEEEC-CCcEEEEEcCeEEEecCC
Confidence 47777877776 699999999999998765 6 7889876522 333 6789999999964
No 177
>PRK07588 hypothetical protein; Provisional
Probab=93.53 E-value=0.23 Score=41.71 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=40.7
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhhc
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~L 116 (162)
|.+.|.+.+. .|++|+++++|++|+.++ + .+ .++++ +|+.+++|.||.|-..+. ..+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR---D--GV-RVTFE---RGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC---C--eE-EEEEC---CCCEEEeCEEEECCCCCccchhh
Confidence 3344444443 479999999999998775 3 33 24444 788889999999988763 5553
No 178
>PRK14727 putative mercuric reductase; Provisional
Probab=93.50 E-value=0.28 Score=42.71 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=42.6
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
...+.+.+.+.+++.|++++++++|+++..++ + .+ .+... +..+++|.||.++...
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~---~--~~-~v~~~----~g~i~aD~VlvA~G~~ 282 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDD---N--GF-VLTTG----HGELRAEKLLISTGRH 282 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC---C--EE-EEEEc----CCeEEeCEEEEccCCC
Confidence 34577888999999999999999999998664 2 22 23222 3468999999999864
No 179
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.48 E-value=0.29 Score=41.97 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.++++|++++++++|++|..++ + .+ .+..+ ++ .+.+|.||.++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~---~--~v-~v~~~---~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE---N--QV-QVHSE---HA-QLAVDALLIASGRQ 253 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--EE-EEEEc---CC-eEEeCEEEEeecCC
Confidence 4577888899999999999999999998664 3 22 23322 33 58999999997643
No 180
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.47 E-value=0.32 Score=42.58 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=44.2
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+..+.+.+.+.|+++|+++++++.|+++.-.+ + .+ .+++..++.++.+++|.|+.++...
T Consensus 218 ~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~~-~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 218 FDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE---A--KV-KVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred cCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC---C--eE-EEEEecCCcceEEEeCEEEEEecCC
Confidence 445678888999999999999999999997654 2 22 3444311112479999999998854
No 181
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=93.47 E-value=0.34 Score=40.57 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=45.3
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcCC
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
+-+.|.+.+++. |++++.+++|+++..++ + . ..|.+. +|+.++||.||.|...+. +.+.+.
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDD---D--G-WELTLA---DGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---C--e-EEEEEC---CCCEEEeCEEEEeCCCCchhHHHcC
Confidence 456677777776 99999999999998775 2 2 234444 677899999999998763 555543
No 182
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.39 E-value=1.1 Score=37.83 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=50.2
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
.+-+.|.+.+++.+ ++++.+++|+.+..+++ .+. +++++ +|++++||.+|-|=..+ ...+.+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-----~v~-v~l~~--dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGD-----GVT-VTLSF--DGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-----ceE-EEEcC--CCcEEecCEEEECCCCchHHHHhcC
Confidence 57788999999888 89999999999999873 455 55542 57799999999887776 4666665
No 183
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.36 E-value=0.39 Score=41.82 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----------cCCceEEeCCEEEEcCCh
Q 031284 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------ATDKKVVQADAYVAACDV 110 (162)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-----------~~~g~~~~aD~VVsa~~~ 110 (162)
..+.+++.|+++++++.+++|.-++ | ++++|++.+ ++..+.+++|.||.++..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~---g--~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN---G--KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC---C--EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 3566788999999999999997543 6 788876531 012257999999999984
No 184
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.34 E-value=0.48 Score=42.57 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=45.4
Q ss_pred cccchHHHHHHHHHcC----cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDKG----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~G----g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..|...|.+.++++| ++++.++.+.++..+++ | ++.|+......+++ .+.|+.||+|+.=
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE--G--VCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC--C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 4467788888777654 78999999999998643 7 89999764211233 5789999999973
No 185
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.30 E-value=0.39 Score=40.22 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=41.7
Q ss_pred chHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
+.+.|.+.+.+.| ++++++++|+++..++ + .+ .+.+. +|+.+.||.||.|...+.
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---D--GV-TVFDQ---QGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC---C--ce-EEEEc---CCCEEecCEEEECCCcCh
Confidence 4567777777775 8999999999998765 3 33 24444 677899999999988763
No 186
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=93.28 E-value=0.024 Score=48.77 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~ 118 (162)
.+-..+.+.+++.|++|++++.|.++..++ + ++++|++...+...++.||.||=|..--.+..+..
T Consensus 91 ~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~---~--~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 91 VFKAVLDEMLAEAGVEVLLGTRVVDVIRDG---G--RITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---c--ccccccccccccccccccccccccccccccccccc
Confidence 344556777788999999999999999987 6 89999886221245789999999888544444443
No 187
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.22 E-value=0.38 Score=42.11 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=48.8
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh-hHHhhc
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV-PGIKRL 116 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~-~~~~~L 116 (162)
.+..+++.+.+.+++.|++++++++|++++-.+ + . ..+.++ +|+ .+++|.|+.|+.- +.+..|
T Consensus 212 ~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~---~--~-v~v~~~---~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 212 EDPEISKELTKQLEKGGVKILLNTKVTAVEKKD---D--G-VLVTLE---DGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred CCHHHHHHHHHHHHhCCeEEEccceEEEEEecC---C--e-EEEEEe---cCCCCEEEeeEEEEccCCccCCCCC
Confidence 456799999999999999999999999998765 2 3 345555 444 7899999999984 345444
No 188
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.21 E-value=0.55 Score=40.94 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----------------cCCceEEeCCEEEEcCChh
Q 031284 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-----------------~~~g~~~~aD~VVsa~~~~ 111 (162)
...+.+++.|+++++++.+.+|..+++ | ++++|++.. +++...+++|.||.++...
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDED--G--RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCC--C--eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 344567789999999999999976543 6 677776531 0123468999999999853
No 189
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.58 Score=40.38 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=52.8
Q ss_pred cceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 35 ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 35 ~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
.++..+|..+++| |.+..+|.-.=.||++-+|+++.+|...++ | ++.|++.. +++..+..+|+...
T Consensus 221 ~~~ylyP~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~--g--k~igvk~~----~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 221 KSPYLYPLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN--G--KVIGVKSG----GEVAKCKKVICDPS 286 (440)
T ss_pred CCcceecccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC--c--cEEEEecC----CceeecceEEecCc
Confidence 4458899999985 999999998889999999999999999553 7 67777543 55666777777654
No 190
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.15 E-value=0.49 Score=42.96 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cCCc-----------eEEeCCEEEEcCChh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK-----------KVVQADAYVAACDVP 111 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~------~~~g-----------~~~~aD~VVsa~~~~ 111 (162)
....+.+++.|+++++++.+.+|..+++ | ++++|++.. +.+| .++++|.||.++...
T Consensus 510 ~~e~~~~~~~Gv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~ 583 (654)
T PRK12769 510 KKEVKNAREEGANFEFNVQPVALELNEQ--G--HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFN 583 (654)
T ss_pred HHHHHHHHHcCCeEEeccCcEEEEECCC--C--eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCC
Confidence 3456678899999999999999976543 6 788887631 1111 268999999999853
No 191
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.14 E-value=0.75 Score=41.30 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~ 110 (162)
..|...|.+.+.+. |++++.++.|++|..++ | ++.|+......+| ..+.|+.||.|..-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD---G--HVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC---C--EEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 35777777777765 89999999999999875 6 7888865321244 36889999999974
No 192
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.10 E-value=0.83 Score=41.03 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=46.1
Q ss_pred cccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~ 110 (162)
+..|...|.+.+++. |++++.++.|++|..++ | ++.|+......+| ..+.|+.||.|..-
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD---G--RVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 346788888877774 89999999999999875 6 8899865321234 46889999999874
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.95 E-value=0.43 Score=42.05 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|++++++++|++|..++ + -..+.++ +|+.+.+|.+|.|+...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~---~~~v~~~---~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETED---G---LIVVTLE---SGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC---C---eEEEEEC---CCCEEEeCEEEECCCCC
Confidence 4577888999999999999999999998765 2 1244444 57789999999999864
No 194
>PRK13748 putative mercuric reductase; Provisional
Probab=92.82 E-value=0.42 Score=42.29 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=42.9
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.+++.|++++++++|++|..++ + .+ .+... ++.+++|.||.++...
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~---~--~~-~v~~~----~~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD---G--EF-VLTTG----HGELRADKLLVATGRA 364 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--EE-EEEec----CCeEEeCEEEEccCCC
Confidence 34677889999999999999999999998654 3 22 23332 3368999999998854
No 195
>PLN02815 L-aspartate oxidase
Probab=92.78 E-value=0.65 Score=41.90 Aligned_cols=62 Identities=6% Similarity=0.055 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~ 109 (162)
..+...|.+.++++ |++|+.++.+++|..+++ +++.++.|+......+|+ .+.|+.||+|+.
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~-g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQD-GGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecC-CCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 35778888888776 899999999999998642 120027888763222443 568999999997
No 196
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.74 E-value=0.41 Score=39.66 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEE--EEEEecCCceEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG--LAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~g--v~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
..+.+.+.+.++++|++++++++|.+|...+ + .+.. +... +++.+++|.++.+.+.
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~---~--~~~~~~~~~~---~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKG---N--TLVVERVVGI---DGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEccc---C--cceeeEEEEe---CCcEEEeeEEEEeecc
Confidence 4588999999999999999999999998875 2 3333 3344 6888999999999864
No 197
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.74 E-value=0.51 Score=39.15 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
.++..+++.++++| ..++.+++|..+..++ +..+|.+. +|+ +.||+||.++....
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~------~~~~v~t~---~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG------RVVGVETD---GGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC------cEEEEEeC---Ccc-EEeCEEEEcCchHH
Confidence 57889999999999 5777799999997751 24566665 454 99999999999764
No 198
>PRK12831 putative oxidoreductase; Provisional
Probab=92.72 E-value=0.57 Score=40.82 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------c-----------CCceEEeCCEEEEcCChh
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------A-----------TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~------~-----------~~g~~~~aD~VVsa~~~~ 111 (162)
+.+++.|+++++++.+.+|..+++ | +++++++.. + ++...+++|.||.++...
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~ 395 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDEN--G--WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS 395 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence 346789999999999999976543 6 777776531 1 111368999999999854
No 199
>PLN02697 lycopene epsilon cyclase
Probab=92.72 E-value=0.45 Score=42.38 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
.|.+.|.+.+.+.|+++ ++++|++|..++ + .+..+.+. +|+.+.||.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~---~--~~~vv~~~---dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEAS---D--GLRLVACE---DGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC---C--cEEEEEEc---CCcEEECCEEEECCCcCh
Confidence 46688888888899998 788999998765 2 33334344 677899999999988765
No 200
>PLN02546 glutathione reductase
Probab=92.72 E-value=0.48 Score=42.45 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=42.8
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+++.+.+.+.+.++++|++++++++|++|..+++ + .+ .+... +++...+|.||.++...
T Consensus 291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~--g--~v-~v~~~---~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD--G--SL-SLKTN---KGTVEGFSHVMFATGRK 349 (558)
T ss_pred cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC--C--EE-EEEEC---CeEEEecCEEEEeeccc
Confidence 4456667788999999999999999999976432 3 22 33332 45555689999998854
No 201
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.67 E-value=1.1 Score=37.53 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
.+.+.|.+.+++.|+..+++++|++++.++ + .+ .+.++ +|+.++||.||.|-..+ .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE---D--EV-TVTLA---DGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC---C--eE-EEEEC---CCCEEEEeEEEEecCCCchhHHhcC
Confidence 456778888888876669999999998775 3 33 34444 67789999999988876 3555544
No 202
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=92.63 E-value=0.52 Score=45.75 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHc---CcEEEcCceeeEEEeccC---CC---CcceEEEEEEEec--CCc--eEEeCCEEEEcCC
Q 031284 48 YLSGPIRKYITDK---GGRFHLRWGCREILYDKA---AN---AETYVKGLAMSKA--TDK--KVVQADAYVAACD 109 (162)
Q Consensus 48 ~l~~~l~~~l~~~---Gg~i~~~~~V~~I~~~~~---~~---~~~~v~gv~~~~~--~~g--~~~~aD~VVsa~~ 109 (162)
.+...|.+.+++. |++|+++++|+++..+++ ++ + +|+|+..... .+| ..+.|+.||+|+.
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~--~V~Gv~~~~~~~~~g~~~~i~AkaVILATG 617 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREI--RVTGVRYKQASDASGQVMDLLADAVILATG 617 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccc--eEEEEEEEecccCCCcEEEEEeceEEEecC
Confidence 4677888888764 999999999999998631 01 3 6889987532 133 3688999999986
No 203
>PRK09897 hypothetical protein; Provisional
Probab=92.63 E-value=0.6 Score=41.65 Aligned_cols=62 Identities=15% Similarity=-0.038 Sum_probs=40.5
Q ss_pred eCCCCcccch---HHHHHHHHHcC--cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 41 LKGSPDVYLS---GPIRKYITDKG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 41 ~~g~~~~~l~---~~l~~~l~~~G--g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
++.-+++.+. +.+.+.+.+.| ++++.+++|+.|..++ + .+ .+.+. .+|+.+.||.||.|+.-
T Consensus 98 PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~--g~-~V~t~--~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 98 PRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---A--GV-MLATN--QDLPSETFDLAVIATGH 164 (534)
T ss_pred CeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---C--EE-EEEEC--CCCeEEEcCEEEECCCC
Confidence 3444543343 34455555677 7899999999998875 3 22 23332 13568899999999973
No 204
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.38 E-value=0.59 Score=41.18 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|++++++++|.+|..++ + ...+.+. +|+.+.+|.||.|+...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~---~~~V~~~---~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA---G---LIEVELA---NGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C---eEEEEEC---CCCEEEcCEEEECCCCC
Confidence 4578899999999999999999999998864 2 2344444 57789999999999864
No 205
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=92.24 E-value=0.44 Score=43.23 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=43.2
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+...|.+.+++. |+++ +.+.|++|..++ + ++.||++. +|..+.|+.||.|+..
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~---g--rV~GV~t~---dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN---G--RVVGVVTQ---DGLEFRAKAVVLTTGT 155 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC---C--EEEEEEEC---CCCEEECCEEEEeeCc
Confidence 457777888877 6787 577899998876 5 78899887 7889999999999883
No 206
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=92.21 E-value=0.48 Score=39.47 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
.+.+.|.+.+++.| ++++ +++|++|..++ + .+ .+++. +|+.+.||.||.+...+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~--~~-~v~~~---~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP---D--AA-TLTLA---DGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC---C--eE-EEEEC---CCCEEEeeEEEEeCCCCchHHHhc
Confidence 46778888889988 9999 99999998765 3 33 35554 57789999999998875 455544
No 207
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=92.05 E-value=0.83 Score=38.74 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR 115 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~ 115 (162)
.+.+-|++..++.|++++.+++|..+..+++ + .+.++ .. ++.++.|+.||.|-.++. +.+
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~--~~~~~-~~---~~~e~~a~~vI~AdG~~s~l~~ 156 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDD--G--VVVGV-RA---GDDEVRAKVVIDADGVNSALAR 156 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--c--EEEEE-Ec---CCEEEEcCEEEECCCcchHHHH
Confidence 4556788899999999999999999999874 4 33333 33 347899999999998763 443
No 208
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=92.03 E-value=0.51 Score=40.16 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=40.9
Q ss_pred cceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEE-eccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 35 ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREIL-YDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 35 ~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~-~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
++-+.+-+|.- +|++.| +++-|.++ +|++|++|. ..++ +. ....|....+.+...-..|+||.|+|.+.
T Consensus 118 ~gl~sV~GGN~--qI~~~l---l~~S~A~v-l~~~Vt~I~~~~~~--~~-~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 118 GGLWSVEGGNW--QIFEGL---LEASGANV-LNTTVTSITRRSSD--GY-SLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred CCceEecCCHH--HHHHHH---HHHccCcE-ecceeEEEEeccCC--Cc-eeEEEEEecCCCCccccCCEEEECCCccc
Confidence 33445556543 555554 55799999 999999993 3332 31 12233333221222334799999999963
No 209
>PRK08013 oxidoreductase; Provisional
Probab=92.02 E-value=0.53 Score=39.80 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=44.4
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
|-+.|.+.+++. |++++++++|++|+.+++ + + .+.+. +|+.++||.||-|=..+ ...+.+.
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~---v-~v~~~---~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGEN--E---A-FLTLK---DGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e---E-EEEEc---CCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 445677777775 799999999999987652 2 2 34444 68889999999888876 4555543
No 210
>PRK06475 salicylate hydroxylase; Provisional
Probab=91.97 E-value=0.81 Score=38.62 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcCC
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
.|-+.|.+.+.+. |++++++++|+++..++ + .+ .+++..+.+++.++||.||-|=..+. .++.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~--~v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG---N--SI-TATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC---C--ce-EEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 3556677777664 89999999999998765 3 33 33332222456789999999888874 666654
No 211
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.95 E-value=0.65 Score=38.72 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=42.4
Q ss_pred hHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 50 SGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 50 ~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
-+.+.+.+.+ .|++++.+++|+++..++ + .+ .++++ +|..+++|.||.+...+ .+.+.+
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~ 175 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQ---G--SV-RVTLD---DGETLTGRLLVAADGSHSALREAL 175 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcC---C--eE-EEEEC---CCCEEEeCEEEEecCCChhhHHhh
Confidence 4556666666 489999999999998765 3 33 35444 67789999999999876 354444
No 212
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.87 E-value=0.67 Score=39.01 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=43.6
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEe-ccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh-HHhhcCCc
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILY-DKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP-GIKRLLPS 119 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~-~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~-~~~~Ll~~ 119 (162)
+.+.|.+..++.|++++++++|++++- ++ . ...|.+.. +| ..++||.||-|=..+ ...+.++.
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~---~---~~~V~~~~--~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDS---D---RPYVTYEK--DGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCC---C---ceEEEEEc--CCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 455667777889999999999999976 33 2 23454422 34 368999988887777 46666543
No 213
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.84 E-value=0.6 Score=39.30 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=43.1
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
+.+.|.+.+.+. |++++++++|++|+.++ + .+ .|.+..+++...++||.||.|-..+ ...+.+.
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~---~--~~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQ---D--AA-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecC---C--ee-EEEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 556677777665 79999999999998765 3 22 3444321112469999999998876 3555543
No 214
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=91.80 E-value=0.57 Score=42.53 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+...|.+.+++. |++++ ...|+++..+++ + ++.+|.+. +|..+.||.||.|+...
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~--g--~V~GV~t~---~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN--D--EIKGVVTQ---DGLKFRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC--C--cEEEEEEC---CCCEEECCEEEEccCcc
Confidence 3556788888988 55665 567888877632 5 78899886 67789999999999855
No 215
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=91.60 E-value=0.7 Score=38.60 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+.+.+.+.+.+.|++++ +++|+.+..+++ ....|.+. +|+.++||.||.|.+...
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-----~~~~v~~~---~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-----ALSTVYCA---GGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-----ceeEEEeC---CCCEEEeCEEEECCCCch
Confidence 4567888888899999986 668999877632 23445554 677899999999999765
No 216
>PRK09126 hypothetical protein; Provisional
Probab=91.53 E-value=0.79 Score=38.28 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=42.4
Q ss_pred chHHHHHHHH-HcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 49 LSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 49 l~~~l~~~l~-~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
+-+.+.+.+. ..|++|+.+++|++++.++ + .+ .|.++ +|+.++||.||.|-..+ ...+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~--~~-~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD---D--GA-QVTLA---NGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---C--eE-EEEEc---CCCEEEeCEEEEeCCCCchhhHhc
Confidence 3344445543 4699999999999998765 3 22 45555 67889999999998876 355544
No 217
>PRK08244 hypothetical protein; Provisional
Probab=91.48 E-value=1.1 Score=39.04 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=45.0
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc-eEEeCCEEEEcCChh-HHhhcCC
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g-~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
+-+.|.+.+++.|++++.+++|+++..++ + .+ .+.+.. .+| +.++||.||-+-..+ ...+.+.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~v-~v~~~~-~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG---D--GV-EVVVRG-PDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcC---C--eE-EEEEEe-CCccEEEEeCEEEECCCCChHHHHhcC
Confidence 45667777888999999999999998776 3 33 233331 134 578999999998876 4555553
No 218
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=91.46 E-value=2.8 Score=37.01 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=41.9
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce-EEeCCEEEEcCChh-HHhhcCC
Q 031284 51 GPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 51 ~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~-~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
+.|.+.+++. |++|+++++|+++..+++ .+. +.+.. .+|. .++||.||.+-..+ ...+.+.
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-----~v~-v~~~~-~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHDD-----GVT-LTVET-PDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcCC-----EEE-EEEEC-CCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 4566666665 689999999999988752 232 33321 1343 68999999998876 4656654
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.46 E-value=0.81 Score=40.31 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--CCceEEeCCEEEEcCCh
Q 031284 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACDV 110 (162)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~--~~g~~~~aD~VVsa~~~ 110 (162)
..+.+.+++ .|++|++++.|++|.-++ + ++.+|++... +.++.+++|.||.++..
T Consensus 391 ~~l~~~l~~~~gV~i~~~~~v~~i~~~~---~--~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 391 KVLQDKLKSLPNVDILTSAQTTEIVGDG---D--KVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHHHHhcCCCCEEEECCeeEEEEcCC---C--EEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 345677776 699999999999997654 4 6777776521 12357899999999874
No 220
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=91.40 E-value=0.37 Score=44.20 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..+++++++..++.|+.|..|++|++|..+.+ +..||.+. -| .+++.+||-++.+.+
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~---~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP---HG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc---Cc-ceecceEEechhHHH
Confidence 46899999999999999999999999999873 34588765 34 689999999999764
No 221
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.30 E-value=0.96 Score=37.64 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----------------cCCceEEeCCEEEEcCChh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-----------------~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.++++|+++++++.|.+++-+ + ++.++++.. +++++.+++|.||.++...
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~----~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE----G--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC----C--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 56677899999999999999998644 3 455554321 1234579999999998754
No 222
>PLN02463 lycopene beta cyclase
Probab=91.18 E-value=0.76 Score=40.04 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+-+.|.+.+.+.|++++ +++|++|+.++ + . ..|.++ +|+.++||.||-|....
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~--~-~~V~~~---dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEE---S--K-SLVVCD---DGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEECcCCC
Confidence 3456778888888999996 67999998875 3 2 356665 67789999999998654
No 223
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.81 E-value=1.1 Score=40.60 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------c-----------CCceEEeCCEEEEcCChh
Q 031284 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------A-----------TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~------~-----------~~g~~~~aD~VVsa~~~~ 111 (162)
..++.|+++++++.+++|..+++ | +++++++.+ + ++..++++|.||.++...
T Consensus 498 ~a~~eGv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~ 566 (639)
T PRK12809 498 NAREEGVEFQFNVQPQYIACDED--G--RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ 566 (639)
T ss_pred HHHHcCCeEEeccCCEEEEECCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCC
Confidence 45788999999999999987643 6 788775421 0 112368999999999843
No 224
>PRK07846 mycothione reductase; Reviewed
Probab=90.76 E-value=0.97 Score=39.13 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=39.0
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+. .+.|++++++++|+++..++ + .+ .+.+. +|+.+++|.||.++...
T Consensus 207 ~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 207 DDISERFTEL-ASKRWDVRLGRNVVGVSQDG---S--GV-TLRLD---DGSTVEADVLLVATGRV 261 (451)
T ss_pred HHHHHHHHHH-HhcCeEEEeCCEEEEEEEcC---C--EE-EEEEC---CCcEeecCEEEEEECCc
Confidence 3455555544 45789999999999997654 3 22 34444 57789999999998754
No 225
>PRK02106 choline dehydrogenase; Validated
Probab=90.38 E-value=0.39 Score=42.67 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=36.7
Q ss_pred HHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCCh
Q 031284 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (162)
Q Consensus 58 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~ 110 (162)
.+.+.+|++++.|++|.+++ + +++||++... ++ .++.++.||+++..
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~---~--~a~GV~~~~~-~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEG---K--RAVGVEYERG-GGRETARARREVILSAGA 260 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeC---C--eEEEEEEEeC-CcEEEEEeeeeEEEccCC
Confidence 35679999999999999985 5 8999987532 12 24679999999984
No 226
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=90.22 E-value=1.9 Score=39.15 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
.+...+.+.+++.|++|+.++.|+++..+++.+| ++.|+......+|+ .+.|+.||+|+.-.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G--rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN--RIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC--eEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 4555566677788899999999999998641015 78998763211343 57899999999854
No 227
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.04 E-value=0.3 Score=42.67 Aligned_cols=58 Identities=19% Similarity=0.036 Sum_probs=45.2
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+.+.|++--.+.+++.|++|+.|+.|+++.... + . .-+.++ ||..++.|+||.++...
T Consensus 391 LPeyls~wt~ekir~~GV~V~pna~v~sv~~~~---~--n-l~lkL~---dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 391 LPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC---K--N-LVLKLS---DGSELRTDLVVVAVGEE 448 (659)
T ss_pred hHHHHHHHHHHHHHhcCceeccchhhhhhhhhc---c--c-eEEEec---CCCeeeeeeEEEEecCC
Confidence 335566666778899999999999999997765 2 1 245566 89999999999998753
No 228
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.03 E-value=1.1 Score=37.71 Aligned_cols=57 Identities=5% Similarity=0.059 Sum_probs=41.9
Q ss_pred HHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcC
Q 031284 52 PIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (162)
Q Consensus 52 ~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll 117 (162)
.+.+.+++. |++++.+++|++++.+++ + + .+.++ +|..++||.||.|-..+. +.+.+
T Consensus 115 ~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~---~-~v~~~---~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 115 GLWQQFAQYPNLTLMCPEKLADLEFSAE--G---N-RVTLE---SGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHhCCCeEEECCCceeEEEEcCC--e---E-EEEEC---CCCEEEeeEEEEecCCCchhHHhc
Confidence 454555553 799999999999988763 2 3 35555 788999999999988874 55554
No 229
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=89.78 E-value=1.4 Score=38.12 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.+ +.|++++++++|+++..++ + .+ .+.+. +|+.+++|.|+.++...
T Consensus 209 d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~---~--~v-~v~~~---~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 209 DEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG---D--GV-TLTLD---DGSTVTADVLLVATGRV 264 (452)
T ss_pred CHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC---C--eE-EEEEc---CCCEEEcCEEEEeeccC
Confidence 344555565544 5789999999999998764 3 32 34443 56789999999999754
No 230
>PRK06126 hypothetical protein; Provisional
Probab=89.74 E-value=2 Score=37.90 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=43.3
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH-HhhcCC
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
+-+.|.+.+++. |++|+++++|+++..++ + .++ +.+....+| ..+++|.||.|-..+. ..+.+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA---D--GVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC---C--eEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 344566666654 89999999999998876 3 344 333321134 3689999999988764 555554
No 231
>PRK06996 hypothetical protein; Provisional
Probab=89.73 E-value=1.2 Score=37.53 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc-eEEeCCEEEEcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACD 109 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g-~~~~aD~VVsa~~ 109 (162)
.+-+.|.+.+++.|++++++++|++++.+.+ + + .+.+. +++| +.++||.||-|=.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~---v-~v~~~-~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--G---V-TLALG-TPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--e---E-EEEEC-CCCcceEEeeeEEEECCC
Confidence 4678889999999999999999999976642 2 2 23232 1122 5899999999855
No 232
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.41 E-value=1.7 Score=40.14 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------c-----------CCceEEeCCEEEEcCChh
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------A-----------TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~------~-----------~~g~~~~aD~VVsa~~~~ 111 (162)
+.+++.|+++++++.+.+|..+++ | +++++++.. + +...++++|.||.++...
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK--G--WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC--C--EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 457889999999999999976543 6 788877631 0 112368999999999854
No 233
>PRK07538 hypothetical protein; Provisional
Probab=89.26 E-value=1.5 Score=37.15 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=40.8
Q ss_pred chHHHHHHHHH-cCc-EEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcC
Q 031284 49 LSGPIRKYITD-KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (162)
Q Consensus 49 l~~~l~~~l~~-~Gg-~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll 117 (162)
|-+.|.+.+.+ .|. +|+++++|+++..+++ + .+..+....++++++++||.||.|=..+. ..+.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~--~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--V--TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 34456666555 474 6999999999987653 3 22222211122235899999999988874 55543
No 234
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.21 E-value=1.7 Score=41.70 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=39.8
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cC--------Cc--eEEeCCEEEEcCChh
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDVP 111 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~------~~--------~g--~~~~aD~VVsa~~~~ 111 (162)
+.+++.|+++++++.+.+|..+++ | +++++++.. +. .| ..+++|.||.++...
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~--G--~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE--G--SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC--C--eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 567889999999999999976543 7 788876631 11 12 368999999999853
No 235
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=89.16 E-value=1.4 Score=37.80 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=45.1
Q ss_pred chHHHHHHHHHcC---cEEEcCceeeEEEec-----cCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcCC
Q 031284 49 LSGPIRKYITDKG---GRFHLRWGCREILYD-----KAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~G---g~i~~~~~V~~I~~~-----~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
+-+.|.+.+++.+ ++++++++|++|+.+ ++ + .-..|++. +|+.++||.||-|=..+ ...+.+.
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~--~--~~v~v~~~---~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDN--S--NWVHITLS---DGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCC--C--CceEEEEc---CCCEEEeeEEEEecCCCChhHHHcC
Confidence 5566778888876 899999999999863 11 1 11245454 78899999999888876 4666554
No 236
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.09 E-value=0.73 Score=42.87 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.....++++++|++++++++|++|..++ . .|.+. +|+.+.+|.+|.|+...
T Consensus 57 ~~~~~~~~~~~gv~~~~g~~V~~Id~~~---k-----~V~~~---~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 57 TLNSKDWYEKHGITLYTGETVIQIDTDQ---K-----QVITD---AGRTLSYDKLILATGSY 107 (785)
T ss_pred cCCCHHHHHHCCCEEEcCCeEEEEECCC---C-----EEEEC---CCcEeeCCEEEECCCCC
Confidence 3345677889999999999999998775 2 24454 67789999999999864
No 237
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=88.92 E-value=1.7 Score=37.41 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-ecCCceEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.++++ ++++++++|++|..+++ . ++++. .+++++.+++|.||.+....
T Consensus 209 d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~--~-----~v~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 209 DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD--E-----KVEELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC--c-----eEEEEEcCCceEEEEeCEEEEccCCc
Confidence 345778888899999 99999999999976531 1 23321 22244679999999998753
No 238
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=88.84 E-value=1.2 Score=37.47 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=43.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+-+.+.+.++ .++.++++++|++|..+++ + ..|+++ +|+.++|+.||-+-++.
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~----~~v~~~---~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGD--G----VLVVLA---DGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCc--e----EEEEEC---CCCEEEeeEEEECCCcc
Confidence 457777888888 7778999999999988762 2 345555 78899999999998754
No 239
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.73 E-value=2.1 Score=37.73 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
+.+.+.+++ .|+++++++.|++|.-++ + ++.++.+....+| +.+++|.|+.++...
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~~~---g--~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTGDG---D--KVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEcCC---C--cEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 456666776 599999999999998664 5 6777776521123 468999999998753
No 240
>PRK05868 hypothetical protein; Validated
Probab=88.72 E-value=1.4 Score=36.99 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=37.7
Q ss_pred HcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcC
Q 031284 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (162)
Q Consensus 59 ~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll 117 (162)
..|++++++++|++|+.++ + .+ .+.++ +|+.++||.||-|=..+. .++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~---~--~v-~v~~~---dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG---D--SV-RVTFE---RAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecC---C--eE-EEEEC---CCCeEEeCEEEECCCCCchHHHHh
Confidence 3689999999999997664 3 23 35455 778899999999888874 65544
No 241
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=88.71 E-value=0.93 Score=38.46 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=56.6
Q ss_pred eeeEeCCCCc---ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 37 LLRMLKGSPD---VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 37 ~~~~~~g~~~---~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
-+-+|..++| =++-+.+.+.+++.||-+..+-+|.+.++.+ + +++.|.+. |.. -++||.+|.|..--
T Consensus 245 l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~---~--~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 245 LFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG---G--RVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred eeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeC---C--eEEEEEec---ccccCCCChhHeeeecccc
Confidence 3344555532 3677889999999999999999999999997 5 78888765 544 46799999998765
Q ss_pred HHhhcCCc
Q 031284 112 GIKRLLPS 119 (162)
Q Consensus 112 ~~~~Ll~~ 119 (162)
.-+.|+.+
T Consensus 317 fskGLvae 324 (421)
T COG3075 317 FSKGLVAE 324 (421)
T ss_pred ccccchhh
Confidence 55555543
No 242
>PLN02661 Putative thiazole synthesis
Probab=88.42 E-value=2.1 Score=36.38 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=41.8
Q ss_pred cchHHHHHHHH-HcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-----ecCC------ceEEeCCEEEEcCC
Q 031284 48 YLSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMS-----KATD------KKVVQADAYVAACD 109 (162)
Q Consensus 48 ~l~~~l~~~l~-~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-----~~~~------g~~~~aD~VVsa~~ 109 (162)
.+.+.|.+... +.|++++.++.|.++..++ + ++.|+.++ ..++ ...+.|++||.|+.
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~---g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG---D--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC---C--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 34556666444 5789999999999999986 5 78898753 1111 13689999999998
No 243
>PRK13984 putative oxidoreductase; Provisional
Probab=88.35 E-value=2 Score=38.56 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=36.8
Q ss_pred HHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----c-----------CCceEEeCCEEEEcCChh
Q 031284 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----A-----------TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 57 l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-----~-----------~~g~~~~aD~VVsa~~~~ 111 (162)
+.+.|+++++++.+.++..++ + +++++++.. + +++..+++|.||.++...
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~~---g--~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIEN---D--KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHHcCCEEEeCCCCEEEEccC---C--EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 346899999999999986654 5 777776531 1 123479999999998854
No 244
>PRK11445 putative oxidoreductase; Provisional
Probab=88.33 E-value=7.6 Score=32.22 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChhH-HhhcC
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLL 117 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~-~~~Ll 117 (162)
+.|.+. .+.|++++.+++|+++..+++ + + .+.... +|+ .++||.||.|-.... +.+.+
T Consensus 103 ~~L~~~-~~~gv~v~~~~~v~~i~~~~~--~---~-~v~~~~--~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 103 LWLKSL-IPASVEVYHNSLCRKIWREDD--G---Y-HVIFRA--DGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred HHHHHH-HhcCCEEEcCCEEEEEEEcCC--E---E-EEEEec--CCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 344443 467899999999999987652 2 2 343321 343 689999999988763 44443
No 245
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=88.17 E-value=1.4 Score=32.82 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEeccCCCCcceE----EEEEEEecCCceEEeCCEEEEcCChh
Q 031284 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYV----KGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v----~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+++++++++|.+|.... + ++ ..+....++++..+.+|++|.|+...
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~---~--~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES---K--RVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST---T--EEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc---c--ccccCcccceeeccCCceEecCCeeeecCccc
Confidence 56666688999999999999998875 3 32 12222233357789999999999854
No 246
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=88.11 E-value=2.5 Score=37.36 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChhH-HhhcCC
Q 031284 51 GPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG-IKRLLP 118 (162)
Q Consensus 51 ~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~~-~~~Ll~ 118 (162)
+.|.+.+++. |++|+++++|++|+.+++ .+ .++++. .+| +.++||.||-+-..+. ..+.+.
T Consensus 117 ~~L~~~~~~~~gv~v~~g~~v~~i~~~~~-----~v-~v~~~~-~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 117 AVLRAGLARFPHVRVRFGHEVTALTQDDD-----GV-TVTLTD-ADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEEcCC-----eE-EEEEEc-CCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 4455556564 999999999999988763 33 333431 134 5789999999888764 556654
No 247
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=87.89 E-value=2.8 Score=37.35 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=35.8
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe---------------cCCceEEeCCEEEEcCChh
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---------------ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~---------------~~~g~~~~aD~VVsa~~~~ 111 (162)
+...+.|+++++++.+.+|.-+++ + .+ ++++.+ +++..++++|.||.++...
T Consensus 313 ~~a~~~GVki~~~~~~~~i~~~~~--~--~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 313 EEALREGVEINWLRTPVEIEGDEN--G--AT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHHHcCCEEEecCCcEEEEcCCC--C--EE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 344678999999999999976653 4 33 554321 1112478999999999843
No 248
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.45 E-value=2 Score=36.31 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+.+++.|++++++++|..|..++ . .|.+. +|+.+.+|++|.|+...
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~---~-----~v~~~---~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDT---R-----ELVLT---NGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCC---C-----EEEEC---CCCEEEcCEEEEccCCC
Confidence 45678899999999999998875 2 24454 67889999999999854
No 249
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=87.03 E-value=2 Score=36.52 Aligned_cols=50 Identities=8% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEe--CCEEEEcCChh
Q 031284 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDVP 111 (162)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~--aD~VVsa~~~~ 111 (162)
.+.+++.|++++++++|++|..++ + . +.+...++++.++ +|++|.|+...
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~~~---~--~---v~~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVNDER---Q--T---VVVRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEECCC---C--E---EEEEECCCCCEEecCCCEEEECCCCC
Confidence 445588999999999999998765 3 2 3333222345677 99999999853
No 250
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=87.01 E-value=1.1 Score=37.08 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+..++.+.+++.|++++.+ +|++|..++ + .|.+. +|+.+++|++|.|+...
T Consensus 55 ~~~~~~~~~~~~~gv~~~~~-~v~~id~~~---~-----~V~~~---~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 55 EIRIDLRRLARQAGARFVIA-EATGIDPDR---R-----KVLLA---NRPPLSYDVLSLDVGST 106 (364)
T ss_pred HhcccHHHHHHhcCCEEEEE-EEEEEeccc---C-----EEEEC---CCCcccccEEEEccCCC
Confidence 35556778888899999875 899998875 2 24555 67789999999999854
No 251
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=87.01 E-value=2.6 Score=35.24 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
.|-+.|.+.+++.| ++++++++|++|..++ + .+ .+.+. ++ .++||.||-|=..+ .+.+.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~--~v-~v~~~---~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN---D--YS-IIKFD---DK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC---C--eE-EEEEc---CC-EEeeCEEEEeCCCCchhHHhc
Confidence 35667777777775 8999999999998775 2 33 34443 44 89999999988876 455554
No 252
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=86.98 E-value=2.9 Score=35.69 Aligned_cols=52 Identities=6% Similarity=0.028 Sum_probs=37.4
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEe--CCEEEEcCChh
Q 031284 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDVP 111 (162)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~--aD~VVsa~~~~ 111 (162)
...+.+++.|++++++++|.+|..++ + . +.+...++++.++ +|++|.|+...
T Consensus 61 ~~~~~~~~~gv~~~~~~~V~~id~~~---~--~---v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 61 RTPEEFIKSGIDVKTEHEVVKVDAKN---K--T---ITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCHHHHHHCCCeEEecCEEEEEECCC---C--E---EEEEECCCCCEEEecCCEEEECCCCC
Confidence 34566788999999999999998875 2 2 3443211355666 99999998754
No 253
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.91 E-value=3.2 Score=36.15 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=42.8
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec-CCceEEeCCEEEEcCChh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~-~~g~~~~aD~VVsa~~~~ 111 (162)
.+..+.+.+.+.++++ ++++++++|++|..++ + .+ .+++... +.++.+++|.||.++...
T Consensus 213 ~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~---~--~~-~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 213 ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE---D--GI-YVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC---C--EE-EEEEEeCCCcceEEEeCEEEEeeccc
Confidence 3445677888889888 9999999999998764 2 22 3444311 112469999999999864
No 254
>PRK07236 hypothetical protein; Provisional
Probab=86.75 E-value=2.1 Score=35.85 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=36.2
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhh-cCCc
Q 031284 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (162)
Q Consensus 61 Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~-Ll~~ 119 (162)
+++|+++++|++|+.++ + .+ .+.++ +|+.+.||.||.|=..+. ..+ +++.
T Consensus 112 ~~~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vIgADG~~S~vR~~l~~~ 163 (386)
T PRK07236 112 AERYHLGETLVGFEQDG---D--RV-TARFA---DGRRETADLLVGADGGRSTVRAQLLPD 163 (386)
T ss_pred CcEEEcCCEEEEEEecC---C--eE-EEEEC---CCCEEEeCEEEECCCCCchHHHHhCCC
Confidence 46899999999998775 3 33 34455 688899999999977663 433 4453
No 255
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=86.58 E-value=3.4 Score=37.92 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=40.6
Q ss_pred cccchHHHHHHH-HHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--C--Cc--------eEEeCCEEEEcCChh
Q 031284 46 DVYLSGPIRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--T--DK--------KVVQADAYVAACDVP 111 (162)
Q Consensus 46 ~~~l~~~l~~~l-~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~--~--~g--------~~~~aD~VVsa~~~~ 111 (162)
+..+.+.+.+.+ +++|++|++++.|++|.-+++ + +...+.+... + ++ +.+++|.|+.++...
T Consensus 352 d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 352 DADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG--N--QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred CHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 344666777765 679999999999999976542 2 2122322210 1 11 379999999999854
No 256
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=86.30 E-value=2 Score=36.42 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhhc
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~L 116 (162)
|.+.|.+.+. ++.++++++|++|..++ + .+ .+..+ +|+.++||.||.|-..+. .++.
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~ad~vVgADG~~S~vR~~ 164 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQA---E--EV-QVLFT---DGTEYRCDLLIGADGIKSALRDY 164 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecC---C--cE-EEEEc---CCCEEEeeEEEECCCccHHHHHH
Confidence 3444444432 46789999999998765 2 32 44444 677899999999988874 5543
No 257
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=86.10 E-value=2.6 Score=35.30 Aligned_cols=47 Identities=13% Similarity=0.016 Sum_probs=36.6
Q ss_pred HHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+..++.|++++++++|++|..++ . . +.+ +++.+.+|.+|.|+...
T Consensus 64 ~~~~~~~~gv~~~~~~~V~~id~~~---~--~---v~~----~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 64 AGEFAEQFNLRLFPHTWVTDIDAEA---Q--V---VKS----QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHHHhCCCEEECCCEEEEEECCC---C--E---EEE----CCeEEeCCEEEECCCCC
Confidence 4456778899999999999998774 2 2 333 46789999999999854
No 258
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.73 E-value=4.1 Score=38.59 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.0
Q ss_pred cccchHHHHHHHHHc----CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 46 DVYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~----Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
+..+...|.+.++++ ++++..++.+.++..++ | ++.|+......+|+ .+.|+.||.|+.=
T Consensus 138 G~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 203 (897)
T PRK13800 138 GKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG---G--RAVGAAALNTRTGEFVTVGAKAVILATGP 203 (897)
T ss_pred chhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC---C--EEEEEEEEecCCCcEEEEECCEEEECCCc
Confidence 345777788887765 56777777778888765 6 88998753222454 5789999999973
No 259
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=85.50 E-value=1.3 Score=35.72 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=51.9
Q ss_pred eeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHHhhcC
Q 031284 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (162)
Q Consensus 38 ~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll 117 (162)
.|+|.|-.+-.|.+.|.+.-++.|-+|.+.+ |.++.... +--.+.+ +.+.+.||+||.+....+=+--+
T Consensus 61 PGFPdgi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ss------kpF~l~t----d~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 61 PGFPDGITGPELMDKMRKQSERFGTEIITET-VSKVDLSS------KPFKLWT----DARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred CCCCcccccHHHHHHHHHHHHhhcceeeeee-hhhccccC------CCeEEEe----cCCceeeeeEEEecccceeeeec
Confidence 4667776667799999999999999998764 77776664 2223332 46678999999999876544356
Q ss_pred Cch
Q 031284 118 PSS 120 (162)
Q Consensus 118 ~~~ 120 (162)
|.+
T Consensus 130 pg~ 132 (322)
T KOG0404|consen 130 PGE 132 (322)
T ss_pred CCC
Confidence 643
No 260
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.45 E-value=3.4 Score=36.08 Aligned_cols=58 Identities=5% Similarity=-0.149 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHcCcE--EEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGR--FHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~--i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
..+.+-|.++.++.|.+ |++|++|++|..++ + + ..|++..+ ++. ...+|+||.|....
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~--~-w~V~~~~~-~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---G--K-WRVQSKNS-GGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---C--e-EEEEEEcC-CCceEEEEcCEEEEeccCC
Confidence 45778888998999988 99999999998764 3 2 33444311 222 45799999988753
No 261
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=85.09 E-value=1.6 Score=41.13 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=39.5
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+.....+.+++.|++++++++|.+|..+. + -|.+. +|+.+++|.+|.|+...
T Consensus 61 l~~~~~~~~~~~gI~~~~g~~V~~Id~~~------~--~V~~~---~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 61 LSLVREGFYEKHGIKVLVGERAITINRQE------K--VIHSS---AGRTVFYDKLIMATGSY 112 (847)
T ss_pred ccCCCHHHHHhCCCEEEcCCEEEEEeCCC------c--EEEEC---CCcEEECCEEEECCCCC
Confidence 33334567788999999999999997764 2 24444 67789999999999854
No 262
>PRK06753 hypothetical protein; Provisional
Probab=85.00 E-value=3 Score=34.55 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=35.9
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-HhhcC
Q 031284 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (162)
Q Consensus 61 Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~Ll 117 (162)
+.+|+++++|++|+.++ + ++ .+.++ +|+.+++|.||.|-..+. +.+.+
T Consensus 110 ~~~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 110 EDAIFTGKEVTKIENET---D--KV-TIHFA---DGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred CceEEECCEEEEEEecC---C--cE-EEEEC---CCCEEecCEEEECCCcchHHHHHh
Confidence 56899999999998665 3 33 34444 678899999999988874 55544
No 263
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.33 E-value=2.4 Score=36.39 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
++++.+.+.+.+.++.+|+++|.++.++++.-..+ | ....+ .. .|.+..+|.++.|+.-
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~--g--~~~~i-~~---~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD--G--LELVI-TS---HGTIEDVDTLLWAIGR 285 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC--C--ceEEE-Ee---ccccccccEEEEEecC
Confidence 57788999999999999999999999999987653 4 22223 23 4666669999999974
No 264
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=83.11 E-value=6.3 Score=33.25 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=43.6
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChhH-HhhcCCc
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLPS 119 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~-~~~Ll~~ 119 (162)
+...|.+.+.+.|++++++++++++...++ . . .+|.+.. +|+ .++||.||-|=..+. ..+.++.
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~--~-~~V~~~~--~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAG--D--R-PYVTFER--DGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCC--C--c-cEEEEEE--CCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 346677777888999999999988865321 2 1 2455521 343 689999998887774 6666654
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=81.70 E-value=1.7 Score=39.16 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
...+.|.+.|+..-.=-.....|+.|.++++ . +++||++. +|..+.|++||.++.
T Consensus 101 ~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~--~--~v~GV~t~---~G~~~~a~aVVlTTG 155 (621)
T COG0445 101 LYRRAMKNELENQPNLHLLQGEVEDLIVEEG--Q--RVVGVVTA---DGPEFHAKAVVLTTG 155 (621)
T ss_pred HHHHHHHHHHhcCCCceehHhhhHHHhhcCC--C--eEEEEEeC---CCCeeecCEEEEeec
Confidence 3466788888888766667788999999763 3 58999888 899999999999986
No 266
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=81.62 E-value=3.8 Score=36.59 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=37.3
Q ss_pred HHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--e-EEeCCEEEEcCCh
Q 031284 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--K-VVQADAYVAACDV 110 (162)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~-~~~aD~VVsa~~~ 110 (162)
..++-+.+|.+++.|++|..++ + +++++.+..++.+ + ...+|.||+++..
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~~---~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGa 264 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLEG---D--RAVGVEVEIGDGGTIETAVAAREVVLAAGA 264 (542)
T ss_pred HhcCCceEEecCCEEEEEEEEC---C--eeEEEEEEeCCCCceEEEecCceEEEeccc
Confidence 3445569999999999999998 5 7888887643221 2 3568888888874
No 267
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=80.60 E-value=8.7 Score=36.75 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe----------------cCCceEEeCCEEEEcCChh
Q 031284 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----------------ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 57 l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~----------------~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.|+++++++.+++|.-+++ ++ +++++++.. ++...+++||.||.|+...
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~-~~--~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDH-TH--FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCC-CC--EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 4578999999999999976531 24 566665421 1112468999999999853
No 268
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=79.72 E-value=9.3 Score=30.80 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec---C-----CceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA---T-----DKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~---~-----~g~~~~aD~VVsa~~~~ 111 (162)
.++..++...-+.|++|+.++.|+.+.+.++ . ++.||+++=+ . |--.++|+.||.++.-.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~--~--rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDD--P--RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecC--C--ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 4666777777889999999999999999874 4 6899987611 1 12257899999999743
No 269
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=79.52 E-value=4.3 Score=34.94 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=46.4
Q ss_pred cceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 35 ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 35 ~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
.+++.+++-|++| |++..+|.-.=.||++-+|+++.+|...+ .|.+|.. ++.+..|..||+...
T Consensus 218 ~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk------~v~~v~~----~~~~~ka~KiI~~~~ 281 (434)
T COG5044 218 KSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK------DVETVDK----GSLTQKAGKIISSPT 281 (434)
T ss_pred CCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc------ceeeeec----CcceeecCcccCCcc
Confidence 5678899888766 99999999988999999999999996653 2323322 234555555655543
No 270
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=7.1 Score=32.33 Aligned_cols=63 Identities=10% Similarity=-0.029 Sum_probs=46.6
Q ss_pred eEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 39 ~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
+++.+.+...|.+.|.+..+.-|.++.. ..|.++...+ ....|.+. +++ +.|+.||.|+....
T Consensus 53 g~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~------~~F~v~t~---~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 53 GFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG------GPFKVKTD---KGT-YEAKAVIIATGAGA 115 (305)
T ss_pred CCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC------ceEEEEEC---CCe-EEEeEEEECcCCcc
Confidence 4445556677899999999999999998 7788876653 12344444 555 99999999998754
No 271
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=78.62 E-value=8.1 Score=33.20 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=33.8
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
+..++.|++++++++|++|..++ + + |.+....+++ .+++|++|.|+...
T Consensus 66 ~~~~~~~i~v~~~~~V~~Id~~~---~--~---v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 66 KFYDRKQITVKTYHEVIAINDER---Q--T---VTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HHHHhCCCEEEeCCEEEEEECCC---C--E---EEEEECCCCcEEeeecCEEEECCCCC
Confidence 34466899999999999998875 2 2 3443211122 46899999998754
No 272
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=78.21 E-value=4.2 Score=34.06 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=34.6
Q ss_pred CCcccchHHHHHHHH------HcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCceEEeCCEEEEcCCh
Q 031284 44 SPDVYLSGPIRKYIT------DKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDV 110 (162)
Q Consensus 44 ~~~~~l~~~l~~~l~------~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~--~~~g~~~~aD~VVsa~~~ 110 (162)
+++..+.+.+-+.+- +.-.+++.+++|+.++.+++ | ++ .+.+.. ++..+.+++|.||+|+..
T Consensus 270 ~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~--~--~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 270 GIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD--G--GV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp EB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES---S--SE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC--C--EE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 444455555544432 23468999999999998863 4 22 344442 223457899999999864
No 273
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=77.46 E-value=2.5 Score=36.06 Aligned_cols=87 Identities=8% Similarity=0.060 Sum_probs=54.1
Q ss_pred CCCCccccHHHHHHHHHHHHhccc---cceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEE
Q 031284 11 FIDCDNISARCMLTIFALFATKTE---ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG 87 (162)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~~~~---~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~g 87 (162)
..+|++.+|.++..+=.++..... ..-.++|++|. +.|++.| ++..+.+|++|+.+..+..++ + .
T Consensus 160 g~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gy-t~~~~~m---l~~~~i~v~l~~~~~~~~~~~---~-----~ 227 (377)
T TIGR00031 160 GLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGY-TKLFEKM---LDHPLIDVKLNCHINLLKDKD---S-----Q 227 (377)
T ss_pred CCChHHCCHHHeEecceEecCCCCcccccccccccccH-HHHHHHH---HhcCCCEEEeCCccceeeccc---c-----c
Confidence 567899999988733223322111 23567788775 3354443 345689999999888887653 2 1
Q ss_pred EEEEecCCceEEeCCEEEEcCChhHHh
Q 031284 88 LAMSKATDKKVVQADAYVAACDVPGIK 114 (162)
Q Consensus 88 v~~~~~~~g~~~~aD~VVsa~~~~~~~ 114 (162)
+.+. ++ .+. |.||++.|++.+-
T Consensus 228 ~~~~---~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 228 LHFA---NK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eeec---cc-ccc-CcEEEecCchHHH
Confidence 3333 22 333 8899999988653
No 274
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=77.43 E-value=11 Score=31.52 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----cCCceEEeCCEEEEcCChh-HHhhcC
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----ATDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-----~~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
.|-+.|.+...+.|++++.+ .|+++..++ + .+ .+.+.. ++....++||.||-|-..+ .+.+.+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~--~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR---D--GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC---C--eE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 35566788888899999765 699987765 3 23 344431 1112478999999998875 354443
No 275
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=77.21 E-value=4.4 Score=35.22 Aligned_cols=67 Identities=22% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCCCccccHHHHHHHHHHHHhcccc----ceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEecc
Q 031284 11 FIDCDNISARCMLTIFALFATKTEA----SLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDK 77 (162)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~~~~~----~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~ 77 (162)
|..-.=-||--+...+.+|..+-.+ +.+-+-+=..-+.++.||..+|+++|+.+.+++.|+.|.++.
T Consensus 187 FAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 187 FAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 3333344666666555555433222 122233333447899999999999999999999999999975
No 276
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=75.76 E-value=4.1 Score=34.71 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHc------CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCCh
Q 031284 48 YLSGPIRKYITDK------GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (162)
Q Consensus 48 ~l~~~l~~~l~~~------Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~ 110 (162)
.|+..+...+++. =++|.+|++|+.|..++ | +|.||+.- +.+|+ .+.+|+||.+..=
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~---g--kVsgVeym-d~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNN---G--KVSGVEYM-DASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC---C--eEEEEEEE-cCCCCccceecCceEEecCC
Confidence 4667777666653 36999999999999654 7 89999874 32443 5779999988863
No 277
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=74.69 E-value=17 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe--------------cCCceEEeCCEEEEcCChh
Q 031284 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--------------ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 57 l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~--------------~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.|++|++++.+.+|.-++ ++..+..+++.. ++....+++|.||.++...
T Consensus 371 a~~eGV~i~~~~~~~~i~~~~---~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 371 ALAEGVSLRELAAPVSIERSE---GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHHcCCcEEeccCcEEEEecC---CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 346799999999999997654 311233333321 0112268999999999853
No 278
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=73.70 E-value=12 Score=32.70 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHcCcEE-EcCceeeEEEeccCCCCcceEEEEEEE-----ecCCc-----------eEEeCCEEEEcCCh
Q 031284 54 RKYITDKGGRF-HLRWGCREILYDKAANAETYVKGLAMS-----KATDK-----------KVVQADAYVAACDV 110 (162)
Q Consensus 54 ~~~l~~~Gg~i-~~~~~V~~I~~~~~~~~~~~v~gv~~~-----~~~~g-----------~~~~aD~VVsa~~~ 110 (162)
.+.++..|+++ ++++.+.+|.-+++ | +++++++. .+.+| ..+++|.||.++..
T Consensus 343 ~e~~~~~gv~~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 343 EEAAAHYGRDPREYSILTKEFIGDDE--G--KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred HhhhhhcCccceEEecCcEEEEEcCC--C--eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 33344456654 67899999976542 5 67777642 11122 36899999999985
No 279
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=72.87 E-value=11 Score=32.22 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=38.9
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE---e----cCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS---K----ATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~---~----~~~g~~~~aD~VVsa~~~~ 111 (162)
+.+..++.+.++..|+++ ...+|++|..++ + . |.+. . +.+|+.+++|++|.|+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~-i~~~V~~Id~~~---~--~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 62 RSICEPVRPALAKLPNRY-LRAVVYDVDFEE---K--R---VKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred HHhHHHHHHHhccCCeEE-EEEEEEEEEcCC---C--E---EEEecccccccccCCceEecCCEEEECCCcc
Confidence 345667777788788876 457999998876 3 2 3331 0 0256789999999999864
No 280
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=72.43 E-value=13 Score=33.11 Aligned_cols=68 Identities=10% Similarity=0.050 Sum_probs=52.9
Q ss_pred eeeEeCCCCcccchHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCC
Q 031284 37 LLRMLKGSPDVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (162)
Q Consensus 37 ~~~~~~g~~~~~l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~ 109 (162)
++-..+|..+..+...|.+.+++ -+++|+-++.+.+|..+++ . .+.|+.+... ++ ..+.|+.||+|+.
T Consensus 123 RIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~--~--~~~Gv~~~~~-~~~~~~~~a~~vVLATG 193 (518)
T COG0029 123 RILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG--I--GVAGVLVLNR-NGELGTFRAKAVVLATG 193 (518)
T ss_pred eEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC--c--eEeEEEEecC-CCeEEEEecCeEEEecC
Confidence 55566777777888999999887 6999999999999999973 3 3558877522 22 4688999999986
No 281
>PLN02785 Protein HOTHEAD
Probab=71.01 E-value=12 Score=33.89 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEE-------eCCEEEEcCCh
Q 031284 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVV-------QADAYVAACDV 110 (162)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~-------~aD~VVsa~~~ 110 (162)
+.....+.+.+|.+++.|++|.++++ +.+.+++||++... +|... .+..||+++..
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~-~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGa 288 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTS-GKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGA 288 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCC-CCCceEEEEEEEEC-CCceEEEEeecccCceEEecccc
Confidence 33344456799999999999999852 11117899987521 34322 23567777663
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.58 E-value=17 Score=32.39 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
..+.+.+.+.+++.|++++ +++|.++..++ +...+... ++ .+.+|.+|.|+...
T Consensus 60 ~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~------~~~~V~~~---~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 60 PELMQEMRQQAQDFGVKFL-QAEVLDVDFDG------DIKTIKTA---RG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHHcCCEEe-ccEEEEEEecC------CEEEEEec---CC-EEEEeEEEECCCCc
Confidence 3467788888888999985 88999998764 23344443 34 57899999998764
No 283
>PLN02985 squalene monooxygenase
Probab=70.39 E-value=26 Score=31.01 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh-HHhhcCC
Q 031284 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
.+.+.|.+.+++. |++++.+ .|+++..++ + .+.+|++..+ +|+ .+.||.||.|-..+ .+++.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~---~--~v~gV~~~~~-dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK---G--VIKGVTYKNS-AGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC---C--EEEEEEEEcC-CCCEEEEECCEEEECCCCchHHHHHhc
Confidence 4567777777776 6888865 577776554 5 6778876422 444 46799999988876 4655443
No 284
>PTZ00367 squalene epoxidase; Provisional
Probab=70.29 E-value=44 Score=30.16 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=41.6
Q ss_pred chHHHHHHH---HHcCcEEEcCceeeEEEeccCC-CCcceEEEEEEEecC----------------------CceEEeCC
Q 031284 49 LSGPIRKYI---TDKGGRFHLRWGCREILYDKAA-NAETYVKGLAMSKAT----------------------DKKVVQAD 102 (162)
Q Consensus 49 l~~~l~~~l---~~~Gg~i~~~~~V~~I~~~~~~-~~~~~v~gv~~~~~~----------------------~g~~~~aD 102 (162)
+.+.+.+.+ ...|++++ ...|+++..++.. ++ ++.+|++...+ +++++.||
T Consensus 133 ~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~--~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~Ad 209 (567)
T PTZ00367 133 FVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSE--RAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAP 209 (567)
T ss_pred HHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCC--eeEEEEEecCCcccccccccccccccccccccccceEEEeC
Confidence 455666665 34588886 4578888665410 02 46777765322 25689999
Q ss_pred EEEEcCChh-HHhhcC
Q 031284 103 AYVAACDVP-GIKRLL 117 (162)
Q Consensus 103 ~VVsa~~~~-~~~~Ll 117 (162)
.||.|=..+ .+++.+
T Consensus 210 LvVgADG~~S~vR~~l 225 (567)
T PTZ00367 210 LVVMCDGGMSKFKSRY 225 (567)
T ss_pred EEEECCCcchHHHHHc
Confidence 999877776 465544
No 285
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=69.24 E-value=8.8 Score=33.86 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCCh
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~ 110 (162)
+.+...--++.++.|.+++++++|+++.... . .+.+. +|+.+..|..|.|+..
T Consensus 127 ~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~---K-----~l~~~---~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 127 EGLAKRTPEFYKEKGIELILGTSVVKADLAS---K-----TLVLG---NGETLKYSKLIIATGS 179 (478)
T ss_pred ccccccChhhHhhcCceEEEcceeEEeeccc---c-----EEEeC---CCceeecceEEEeecC
Confidence 3455666678899999999999999999986 2 35666 8999999999998876
No 286
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=69.04 E-value=24 Score=30.64 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=40.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec------CCceEEeCCEEEEcCChh-HHhhcC
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~------~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
|-+.|.+..++.|++++.+ .|++|..+.+.++ ...|++... +.+..++||.||-|-..+ .+.+.+
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~---~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKDPNG---PYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccCCCC---cEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHh
Confidence 4567888888899999876 5888876421012 223444321 223578999999998876 344443
No 287
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=68.36 E-value=18 Score=25.05 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=28.8
Q ss_pred HHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCC
Q 031284 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD 102 (162)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD 102 (162)
|++.|+++|+-+ +|.++....+ +. -|+.|.++ ||..+.+|
T Consensus 2 mVklie~~G~~F----~V~dm~~~dg-~~--~V~~ie~~---dGti~~~~ 41 (102)
T PF03197_consen 2 MVKLIEENGGWF----EVKDMSSIDG-DY--FVEKIEMA---DGTIYNSD 41 (102)
T ss_pred HhHHHHHcCCcE----EEeeeEeccc-ce--eEEEEEec---CCcEEcCC
Confidence 789999999988 5677766542 13 57788887 78776654
No 288
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=68.17 E-value=12 Score=33.41 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHcCc--EEEcCceeeEEEeccCC--CCcceEEEEEEEecCCce--EEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGG--RFHLRWGCREILYDKAA--NAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg--~i~~~~~V~~I~~~~~~--~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~ 112 (162)
+.+.+-+.++.+..|. .|++||+|+++...++. .| + +.|++. .+|+ ...+|+||.|...+.
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~--~-W~V~~~--~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATG--K-WEVTTE--NDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ET--E-EEEEET--TTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCc--e-EEEEee--cCCeEEEEEeCeEEEcCCCcC
Confidence 4577888888888776 79999999999876420 12 1 233332 2343 456999988887543
No 289
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=68.00 E-value=29 Score=29.37 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=40.5
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEec------CCceEEeCCEEEEcCChh-HHhhcC
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLL 117 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~------~~g~~~~aD~VVsa~~~~-~~~~Ll 117 (162)
+-+.|.+...+.|++++.++ ++.+....+ .+ ...++++... +.+..++||.||-|-..+ .+.+.+
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~-~~--~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPAD-AD--DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccC-CC--ceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 44557888888999998885 777754221 02 2344543211 123478999999998876 344443
No 290
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=67.68 E-value=13 Score=34.22 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=36.4
Q ss_pred cCc-EEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhh-cCCc
Q 031284 60 KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (162)
Q Consensus 60 ~Gg-~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~-Ll~~ 119 (162)
.|. .++.+++|++|+.++ + .++ +++. +|+.+++|.||.|-..+. ..+ +++.
T Consensus 204 lg~~~i~~g~~V~~I~~~~---d--~Vt-V~~~---dG~ti~aDlVVGADG~~S~vR~~l~g~ 257 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSG---D--KVT-VVLE---NGQRYEGDLLVGADGIWSKVRNNLFGR 257 (668)
T ss_pred CCCCEEEcCCEEEEEEEeC---C--EEE-EEEC---CCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence 444 478999999998775 3 443 5454 677899999999998764 444 5553
No 291
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.62 E-value=11 Score=32.91 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=33.7
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEE--ecCCceEEeCCEEEEcCChh
Q 031284 61 GGRFHLRWGCREILYDKAANAETYVKGLAMS--KATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 61 Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~--~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+++..+++|+.++..++ | + ..+.+. +++..++++.|+||+|+..+
T Consensus 292 ~v~l~~~~ev~~~~~~G~--g--~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD--G--R-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CeeeccccceeeeecCCC--c--e-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 358899999999999875 6 4 233333 23345678999999999876
No 292
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=67.41 E-value=29 Score=31.60 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=43.9
Q ss_pred chHHHHHHHHHcCc--EEEcCceeeEEEeccCCCCcceEEEEEEEec---CCc--eEEeCCEEEEcCChh-HHhhcCC
Q 031284 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKA---TDK--KVVQADAYVAACDVP-GIKRLLP 118 (162)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~---~~g--~~~~aD~VVsa~~~~-~~~~Ll~ 118 (162)
+-+.|.+.+.+.|+ +++++++|++++.+++ ++ .-+.+.+... .+| ++++||.||-|=..+ ..++.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~-~~--~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEE-GE--YPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCC-CC--CCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 45567777878775 7899999999988642 11 1123334311 024 579999999888777 4666653
No 293
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=66.24 E-value=11 Score=31.74 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=28.8
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 61 Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+..|+++++|+++ +. + +|+++ +|+.++||.||-+.+++
T Consensus 100 ~~~i~~~~~V~~v--~~---~-----~v~l~---dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DA---D-----GVDLA---PGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eC---C-----EEEEC---CCCEEEeeEEEECCCCC
Confidence 4348889999988 33 2 24555 78899999999998865
No 294
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=65.98 E-value=9.9 Score=32.69 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=39.8
Q ss_pred cchHHHHHHHHH---cC-cEEEcCceeeEEEeccCCCCcceEEEEEE---Eec------------CCceEEeCCEEEEcC
Q 031284 48 YLSGPIRKYITD---KG-GRFHLRWGCREILYDKAANAETYVKGLAM---SKA------------TDKKVVQADAYVAAC 108 (162)
Q Consensus 48 ~l~~~l~~~l~~---~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~---~~~------------~~g~~~~aD~VVsa~ 108 (162)
-+.+++++.+++ +| +++++.++|.+++..+ + +++||.- +-+ ..+-+++|.+||.+.
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~---g--rvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~S 224 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG---G--RVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVAS 224 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEeeC---C--eEeeecccccCCCccccCCCccceeecceEEeeeeEEEec
Confidence 366788887777 55 7999999999999997 5 7887652 100 012256788888775
Q ss_pred C
Q 031284 109 D 109 (162)
Q Consensus 109 ~ 109 (162)
.
T Consensus 225 G 225 (552)
T COG3573 225 G 225 (552)
T ss_pred C
Confidence 4
No 295
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=65.51 E-value=27 Score=31.09 Aligned_cols=54 Identities=9% Similarity=-0.003 Sum_probs=33.0
Q ss_pred HHHHHHHH-HcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceE--E--eCCE----EEEcCCh
Q 031284 51 GPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--V--QADA----YVAACDV 110 (162)
Q Consensus 51 ~~l~~~l~-~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~--~--~aD~----VVsa~~~ 110 (162)
..+.+.+. +.|++++++++|++|.-+ + ++..+.+....+|+. + .+|. ||.++..
T Consensus 182 ~~~~~~~~~~~gV~i~~~~~V~~i~~~----~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~ 244 (555)
T TIGR03143 182 KLIAEKVKNHPKIEVKFNTELKEATGD----D--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244 (555)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEcC----C--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCC
Confidence 33444444 469999999999999743 3 455554432223443 2 3665 8888764
No 296
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=64.48 E-value=14 Score=31.00 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-ecCCceEEeCCEEEEcCCh
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDV 110 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-~~~~g~~~~aD~VVsa~~~ 110 (162)
+...+.+-+.-..++.+..++++++|++|..+.+ ++. ....|.+. .+++++.+.|++||.++..
T Consensus 93 ~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~-~~~-~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 93 SRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDD-GDE-DLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEE-TTE-EEEEEEEEETTS-EEEEEESEEEE----
T ss_pred CHHHHHHHHHHHHHhCCCceEECCEEEEEEEecC-CCc-cEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 3455777777777777877999999999999863 110 12344432 1234678999999999873
No 297
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=63.73 E-value=13 Score=34.78 Aligned_cols=55 Identities=11% Similarity=-0.019 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
+.++-.--++.+++|++++++.+|..|..++ + .|..+ .|..+..|..|.|+....
T Consensus 59 edi~l~~~dwy~~~~i~L~~~~~v~~idr~~---k-----~V~t~---~g~~~~YDkLilATGS~p 113 (793)
T COG1251 59 EDISLNRNDWYEENGITLYTGEKVIQIDRAN---K-----VVTTD---AGRTVSYDKLIIATGSYP 113 (793)
T ss_pred HHHhccchhhHHHcCcEEEcCCeeEEeccCc---c-----eEEcc---CCcEeecceeEEecCccc
Confidence 3455566778899999999999999997775 2 34444 788999999888887543
No 298
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=62.11 E-value=36 Score=29.55 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=41.3
Q ss_pred chHHHHHHHHHcCc--EEEcCceeeEEEeccCCCCcceEEEEEEEecCCceE--EeCCEEEEcCChh
Q 031284 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDVP 111 (162)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~--~~aD~VVsa~~~~ 111 (162)
+.+-+..++++.|. +|.++++|+....+.+ + ...-|+++ +|.. +.||.||+|+...
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~--~--~~w~V~~~---~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED--T--KRWTVTTS---DGGTGELTADFVVVATGHL 143 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC--C--CeEEEEEc---CCCeeeEecCEEEEeecCC
Confidence 67888899998886 6788899999888764 4 34455554 3333 6699999999863
No 299
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=60.25 E-value=23 Score=29.27 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=39.6
Q ss_pred hHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEec-CCceEEeCCEEEEcCCh
Q 031284 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDV 110 (162)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~-~~g~~~~aD~VVsa~~~ 110 (162)
-+.+++.++++ .+++++|++|++|.=+ .+.+|++... +....+.+|.|..++..
T Consensus 181 ~~~~~~~l~~~~~i~~~~~~~i~ei~G~-------~v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 181 EEILVERLKKNVKIEVLTNTVVKEILGD-------DVEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred CHHHHHHHHhcCCeEEEeCCceeEEecC-------ccceEEEEecCCceEEEEeceEEEecCC
Confidence 57888888888 8999999999999544 2456766521 12337889998888764
No 300
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=59.55 E-value=13 Score=31.92 Aligned_cols=67 Identities=9% Similarity=-0.024 Sum_probs=47.1
Q ss_pred CCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 43 GSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 43 g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
-++++.+++.++++++++|+++.-.+.+.+++..++ |+.++..=.+ +++++.+-..|.|+.|+.-..
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~--g~l~v~~k~t-~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD--GKLRVFYKNT-NTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeeccC--CcEEEEeecc-cccccccchhhhhhhhhcccc
Confidence 367888999999999999999999988888887654 6212221111 122233456899999998654
No 301
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=59.48 E-value=32 Score=33.37 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=31.6
Q ss_pred HHcCcEEEcCceeeEEEeccCCCCcceEEEEEE-------------EecCCceEEeCCEEEEcCChh
Q 031284 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAM-------------SKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 58 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~-------------~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.|+++++++.+++|..+ | ++....+ ..++++.++++|.||.++...
T Consensus 718 leeGVe~~~~~~p~~I~~d----G--~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 718 LEDGVEFKELLNPESFDAD----G--TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHcCCEEEeCCceEEEEcC----C--cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 3579999999999998532 3 2221111 011245689999999999864
No 302
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=57.91 E-value=35 Score=33.12 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=38.8
Q ss_pred HHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-c-----------C---------------CceEEeCCEEEEc
Q 031284 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-A-----------T---------------DKKVVQADAYVAA 107 (162)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-~-----------~---------------~g~~~~aD~VVsa 107 (162)
+...+.|++++.++...+|..+++ | +++++++.. . . ....++||.||.|
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~--g--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A 723 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKY--G--HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMA 723 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCC--C--eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEe
Confidence 345788999999999999988754 7 888887751 1 0 1146789999999
Q ss_pred CC
Q 031284 108 CD 109 (162)
Q Consensus 108 ~~ 109 (162)
+.
T Consensus 724 ~G 725 (1028)
T PRK06567 724 IG 725 (1028)
T ss_pred cc
Confidence 86
No 303
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=57.13 E-value=29 Score=29.86 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+++.|++++.+ +++.+..+ .+ .+ .. +|+.+++|++|.|+...
T Consensus 91 ~~~~~~~~~l~~~gV~~~~g-~~~~v~~~-------~v-~v-~~---~g~~~~~d~lIiATGs~ 141 (446)
T TIGR01424 91 RLSGLYKRLLANAGVELLEG-RARLVGPN-------TV-EV-LQ---DGTTYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHHHHHhCCcEEEEE-EEEEecCC-------EE-EE-ec---CCeEEEcCEEEEecCCc
Confidence 35566777788899999877 66666322 12 22 22 56789999999999754
No 304
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=57.08 E-value=14 Score=32.73 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-----ecC-------CceEEeCCEEEEcCChh-H-
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-----KAT-------DKKVVQADAYVAACDVP-G- 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-----~~~-------~g~~~~aD~VVsa~~~~-~- 112 (162)
..++.-|.+..|+.|++|+.+..+.++.++++ | .|+||.++ +++ .|-.+.|..-|.|=..+ .
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed--g--sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDED--G--SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCC--C--cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 34677788889999999999999999999986 8 78999765 111 13356788888887765 2
Q ss_pred HhhcCC
Q 031284 113 IKRLLP 118 (162)
Q Consensus 113 ~~~Ll~ 118 (162)
.++++.
T Consensus 259 skqi~k 264 (621)
T KOG2415|consen 259 SKQIIK 264 (621)
T ss_pred HHHHHH
Confidence 344543
No 305
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=55.48 E-value=41 Score=26.90 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe---cCC-----ceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---ATD-----KKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~---~~~-----g~~~~aD~VVsa~~~~ 111 (162)
.+...|.....+.|++|+-.+.|+.+.+.++ + |+.||+++- +.. --.++|..||.++..+
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~--~--rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVRED--D--RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECS--C--EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC--C--eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 3555555555669999999999999999873 5 899998861 111 2368999999999543
No 306
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=54.85 E-value=39 Score=29.25 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=33.3
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEE--eccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 50 SGPIRKYITDKGGRFHLRWGCREIL--YDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~I~--~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+++.|++++.++. +.+. .+. . .+ .|... +|+ .+.+|.+|.|+...
T Consensus 95 ~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~---~--~v-~V~~~---~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 95 SADIRARLEREGVRVIAGRG-RLIDPGLGP---H--RV-KVTTA---DGGEETLDADVVLIATGAS 150 (466)
T ss_pred HHHHHHHHHHCCCEEEEEEE-EEeecccCC---C--EE-EEEeC---CCceEEEecCEEEEcCCCC
Confidence 44566778889999988764 3333 333 2 22 33332 454 68999999999854
No 307
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=54.79 E-value=26 Score=29.53 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecC-CceEEeCCEEEEcCChhHHhhcCC
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKAT-DKKVVQADAYVAACDVPGIKRLLP 118 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~-~g~~~~aD~VVsa~~~~~~~~Ll~ 118 (162)
.+...|.+..++.| +++.++ .|.++..+. + |+.++...+.. .....+++++|.++.|++-+ |+|
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk---~--r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp 213 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSDEK---H--RINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLP 213 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeeccc---c--cccccchhhhcCceEEeeeeEEEEecCCCchh-hcc
Confidence 67888888888887 788777 477776444 5 77777543211 24556788888888877643 444
No 308
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=52.06 E-value=41 Score=28.87 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=32.0
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+++.|++++.++. +.+ +. . .+ .+... .+++.+.+|++|.|+...
T Consensus 95 ~~~~~~~~~~~gv~~~~g~~-~~~--~~---~--~~-~v~~~--~~~~~~~~d~lViAtGs~ 145 (462)
T PRK06416 95 TGGVEGLLKKNKVDIIRGEA-KLV--DP---N--TV-RVMTE--DGEQTYTAKNIILATGSR 145 (462)
T ss_pred HHHHHHHHHhCCCEEEEEEE-EEc--cC---C--EE-EEecC--CCcEEEEeCEEEEeCCCC
Confidence 34466678889999998853 333 32 2 22 23221 134678999999998753
No 309
>PRK10262 thioredoxin reductase; Provisional
Probab=51.21 E-value=79 Score=25.59 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+...+.+++.+ +|++|..++ + . +++.. +...+.+|.||.|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~---~--~---~~v~~--~~~~~~~d~vilAtG~~ 116 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQN---R--P---FRLTG--DSGEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecC---C--e---EEEEe--cCCEEEECEEEECCCCC
Confidence 35677788888888888776 677887764 3 2 22221 23368999999999864
No 310
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.51 E-value=47 Score=27.45 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|..+.-.-.+...-+.+.+- .+-.|++..|.++|..+ |+.|+-.+... . . +. .
T Consensus 135 cTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~~~~--~AtVtvchs~T---~-----~--l~----~ 196 (287)
T PRK14181 135 CTPAGIIELLKYYEIPLHGRHVAIVGRSN--IVGKPLAALLMQKHPDT--NATVTLLHSQS---E-----N--LT----E 196 (287)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHhCcCCC--CCEEEEeCCCC---C-----C--HH----H
Confidence 46777888888764344566777777644 78999999999985442 45555432211 0 0 11 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|++-+
T Consensus 197 ~~~~ADIvV~AvG~p 211 (287)
T PRK14181 197 ILKTADIIIAAIGVP 211 (287)
T ss_pred HHhhCCEEEEccCCc
Confidence 245799999999865
No 311
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=48.42 E-value=48 Score=28.60 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=33.2
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+.+.+.+.+++.|++++.++.+. .++ + . |.+ +++.+.+|+||.|+...
T Consensus 93 ~~~~~~~~l~~~gv~~~~g~~~~---~~~---~--~---v~v----~~~~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 93 LNGIYQKNLEKNKVDVIFGHARF---TKD---G--T---VEV----NGRDYTAPHILIATGGK 140 (450)
T ss_pred HHHHHHHHHHhCCCEEEEEEEEE---ccC---C--E---EEE----CCEEEEeCEEEEecCCC
Confidence 34456677888999999998752 232 3 2 333 36679999999998743
No 312
>PLN02852 ferredoxin-NADP+ reductase
Probab=46.87 E-value=95 Score=27.55 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=35.3
Q ss_pred cCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--------------CCc--eEEeCCEEEEcCChh
Q 031284 60 KGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------------TDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 60 ~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~--------------~~g--~~~~aD~VVsa~~~~ 111 (162)
.|+.+++.....+|.-+++++| ++.++++... .+| +.+++|.||.++...
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~--~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~ 353 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG--HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYK 353 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC--cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCC
Confidence 5899999999999975321125 7888887521 023 358999999999864
No 313
>PRK06116 glutathione reductase; Validated
Probab=46.69 E-value=43 Score=28.67 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=31.9
Q ss_pred chHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+.+.+.+.+++.|++++.++ ++.+ +. . + |.+ +|+.+++|.+|.|+...
T Consensus 95 ~~~~~~~~l~~~gv~~~~g~-~~~v--~~---~--~---v~~----~g~~~~~d~lViATGs~ 142 (450)
T PRK06116 95 LHGSYRNGLENNGVDLIEGF-ARFV--DA---H--T---VEV----NGERYTADHILIATGGR 142 (450)
T ss_pred HHHHHHHHHHhCCCEEEEEE-EEEc--cC---C--E---EEE----CCEEEEeCEEEEecCCC
Confidence 34445566778999999885 4444 32 2 2 333 36789999999998743
No 314
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.47 E-value=73 Score=26.22 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+..+-+.+.+. .+-.|++..|.++|.+| +-.+... . . +. .
T Consensus 140 cTp~aii~lL~~y~i~l~Gk~vvViGrS~--~VGkPla~lL~~~~ATV------t~chs~T---~-----d--l~----~ 197 (282)
T PRK14180 140 CTPKGIMTMLREYGIKTEGAYAVVVGASN--VVGKPVSQLLLNAKATV------TTCHRFT---T-----D--LK----S 197 (282)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEE------EEEcCCC---C-----C--HH----H
Confidence 47777888888765555677777787755 78999999999988665 2221110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|++-+.
T Consensus 198 ~~k~ADIvIsAvGkp~ 213 (282)
T PRK14180 198 HTTKADILIVAVGKPN 213 (282)
T ss_pred HhhhcCEEEEccCCcC
Confidence 2346999999998653
No 315
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=46.21 E-value=28 Score=31.30 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=37.2
Q ss_pred chHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
+-+.|.+.+.+- .-+|+ ...|..|.+++.++|.-++.||++. ||..+.|+.||.++.
T Consensus 126 Ykk~MQkei~st~nL~ir-e~~V~dliv~~~~~~~~~~~gV~l~---dgt~v~a~~VilTTG 183 (679)
T KOG2311|consen 126 YKKNMQKEISSTPNLEIR-EGAVADLIVEDPDDGHCVVSGVVLV---DGTVVYAESVILTTG 183 (679)
T ss_pred HHHHHHHHhccCCcchhh-hhhhhheeeccCCCCceEEEEEEEe---cCcEeccceEEEeec
Confidence 344566666553 33443 4456677765433342137799998 899999999999876
No 316
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=45.52 E-value=32 Score=31.30 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=65.8
Q ss_pred cceeeEeCCCCc-ccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCceEEeCCEEEEcCCh-
Q 031284 35 ASLLRMLKGSPD-VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDV- 110 (162)
Q Consensus 35 ~~~~~~~~g~~~-~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~--~~~g~~~~aD~VVsa~~~- 110 (162)
...+-|..|... .++.-.++=-..++|..+.-..+|+++..+++ | ++.|.++.- ++..-.+.|..||-|+.|
T Consensus 211 ~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~--~--kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpf 286 (680)
T KOG0042|consen 211 KGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD--G--KVIGARARDHITGKEYEIRAKVVVNATGPF 286 (680)
T ss_pred eeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC--C--ceeeeEEEEeecCcEEEEEEEEEEeCCCCc
Confidence 345666666543 35666666667789999999999999999875 7 788877651 212225779999999876
Q ss_pred -hHHhhcCCchhhcchhhhhhhcCCCCCEEEEEEEeCccc
Q 031284 111 -PGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (162)
Q Consensus 111 -~~~~~Ll~~~~~~~~~~~~l~~l~~~~~~~v~l~~d~~~ 149 (162)
+.+.++-.+..++ .=+|+..+|+.+.+=|
T Consensus 287 sDsIr~Mdd~~~~~----------i~~pSsGvHIVlP~yY 316 (680)
T KOG0042|consen 287 SDSIRKMDDEDAKP----------ICVPSSGVHIVLPGYY 316 (680)
T ss_pred cHHHHhhcccccCc----------eeccCCceeEEccccc
Confidence 3566665443211 1134666777765544
No 317
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=44.44 E-value=81 Score=27.25 Aligned_cols=54 Identities=4% Similarity=-0.040 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEec--cCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYD--KAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~--~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
+...+.+++.|++++.+. ++.|..+ .++++ -..|.+. +| +.+.+|++|.|+...
T Consensus 96 ~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~---~~~v~~~---~g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 96 KGVAALLKKGKIDVFHGI-GRILGPSIFSPMPG---TVSVETE---TGENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCce---EEEEEeC---CCceEEEEcCEEEEeCCCC
Confidence 344566778899999985 4555443 00001 2233333 44 578999999998753
No 318
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.96 E-value=59 Score=26.93 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+. ..-.|++..|.++| +-.|+.|+-.+-.. . . +. .
T Consensus 139 cTp~av~~lL~~~~i~l~GK~vvViGrS~--iVGkPla~lL~~~~--~~~~aTVtvchs~T---~-----n--l~----~ 200 (293)
T PRK14185 139 ATPNGILELLKRYHIETSGKKCVVLGRSN--IVGKPMAQLMMQKA--YPGDCTVTVCHSRS---K-----N--LK----K 200 (293)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHcCC--CCCCCEEEEecCCC---C-----C--HH----H
Confidence 46777777887765445566777777644 78999999999886 11244454442221 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|++-+.
T Consensus 201 ~~~~ADIvIsAvGkp~ 216 (293)
T PRK14185 201 ECLEADIIIAALGQPE 216 (293)
T ss_pred HHhhCCEEEEccCCcC
Confidence 2347999999999653
No 319
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=43.54 E-value=1.2e+02 Score=29.66 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHcCcEEEcCceeeEEEeccCCCCcceEEEEEEE-------------ecCCceEEeCCEEEEcCChh
Q 031284 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-------------KATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 58 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~-------------~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.|+++++++.+.+|. + + +++...+. .++++.++++|.||.++...
T Consensus 716 leeGVe~~~~~~p~~I~-~----g--~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 716 LEDGVDFKELLSPESFE-D----G--TLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred HHcCCEEEeCCceEEEE-C----C--eEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 45799999999998886 2 3 33222110 01123368999999999853
No 320
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=43.53 E-value=98 Score=27.23 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=52.3
Q ss_pred ccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEe--CC-EEEEcCChhHHhh-cCCchh
Q 031284 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--AD-AYVAACDVPGIKR-LLPSSW 121 (162)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~--aD-~VVsa~~~~~~~~-Ll~~~~ 121 (162)
.++++.|.+...+. .+++. .-.|.++.-|+ | -++||+.+.. .|++.+ |. .|||..=...+++ |.++..
T Consensus 147 GRFvq~lR~ka~slpNV~~e-eGtV~sLlee~---g--vvkGV~yk~k-~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v 219 (509)
T KOG1298|consen 147 GRFVQRLRKKAASLPNVRLE-EGTVKSLLEEE---G--VVKGVTYKNK-EGEEVEAFAPLTVVCDGCFSNLRRSLCDPKV 219 (509)
T ss_pred cHHHHHHHHHHhcCCCeEEe-eeeHHHHHhcc---C--eEEeEEEecC-CCceEEEecceEEEecchhHHHHHHhcCCcc
Confidence 46788888877665 34443 34466666665 6 7889988632 233333 44 3666665666655 444321
Q ss_pred hcchhhhhhhcCCCCC-EEEEEEEeCcccCcc-c-ceeccc
Q 031284 122 REMKFFNNIYALVGVP-VVTVQLRYNGWVTEL-Q-DLERSR 159 (162)
Q Consensus 122 ~~~~~~~~l~~l~~~~-~~~v~l~~d~~~~~~-~-~~~f~~ 159 (162)
. .++ .+.-++..+.+++.. | |+.+++
T Consensus 220 ~------------~V~S~fVG~vl~N~~l~~p~hghvIL~~ 248 (509)
T KOG1298|consen 220 E------------EVPSYFVGLVLKNCRLPAPNHGHVILSK 248 (509)
T ss_pred c------------ccchheeeeeecCCCCCCCCcceEEecC
Confidence 1 111 333344457777643 2 777774
No 321
>PLN02546 glutathione reductase
Probab=41.78 E-value=61 Score=29.16 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+++.|++++.+.. +.+ +. . . |.+ +|+.+.+|++|.|+...
T Consensus 179 ~l~~~~~~~l~~~gV~~i~G~a-~~v--d~---~--~---V~v----~G~~~~~D~LVIATGs~ 227 (558)
T PLN02546 179 RLTGIYKNILKNAGVTLIEGRG-KIV--DP---H--T---VDV----DGKLYTARNILIAVGGR 227 (558)
T ss_pred HHHHHHHHHHHhCCcEEEEeEE-EEc--cC---C--E---EEE----CCEEEECCEEEEeCCCC
Confidence 3456667778889999987633 333 22 1 1 333 36788999999998753
No 322
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.04 E-value=94 Score=25.62 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.+..++.+|.++--.-.+...-+.+.+. .+-.|++..|.++|.+|.. .+... . . +. .
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvViGrs~--iVGkPla~lL~~~~atVt~------~hs~t---~-----~--l~----~ 197 (285)
T PRK14189 140 CTPYGVMKMLESIGIPLRGAHAVVIGRSN--IVGKPMAMLLLQAGATVTI------CHSKT---R-----D--LA----A 197 (285)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCC--ccHHHHHHHHHHCCCEEEE------ecCCC---C-----C--HH----H
Confidence 35777778888765445666777777655 6789999999999877753 11110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||++++-+
T Consensus 198 ~~~~ADIVV~avG~~ 212 (285)
T PRK14189 198 HTRQADIVVAAVGKR 212 (285)
T ss_pred HhhhCCEEEEcCCCc
Confidence 234799999999944
No 323
>PLN02507 glutathione reductase
Probab=38.84 E-value=92 Score=27.39 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=29.3
Q ss_pred HHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
+.+.+++.|++++.+ +++.+..+ . ..|.+. +|+ .+.+|++|.|+...
T Consensus 130 ~~~~l~~~gV~~i~g-~a~~vd~~-------~-v~V~~~---~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGKIVGPN-------E-VEVTQL---DGTKLRYTAKHILIATGSR 178 (499)
T ss_pred HHHHHHhCCcEEEEE-EEEEecCC-------E-EEEEeC---CCcEEEEEcCEEEEecCCC
Confidence 445567789988887 45555322 1 233333 454 58899999998753
No 324
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=38.78 E-value=93 Score=26.65 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChh
Q 031284 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (162)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+++.|++++.++ ++.+ +. + .+ .+... +|+ .+++|++|.|+...
T Consensus 97 ~~~~~~~~~~~~v~~~~g~-~~~~--~~---~--~~-~v~~~---~g~~~~~~~d~lviATGs~ 148 (461)
T PRK05249 97 VEVRRGQYERNRVDLIQGR-ARFV--DP---H--TV-EVECP---DGEVETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHHHHHHCCCEEEEEE-EEEe--cC---C--EE-EEEeC---CCceEEEEcCEEEEcCCCC
Confidence 3445566788899999885 3333 32 2 22 23332 343 68999999999743
No 325
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=38.57 E-value=33 Score=26.11 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=49.1
Q ss_pred CCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH--HhhcCCc
Q 031284 42 KGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG--IKRLLPS 119 (162)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~--~~~Ll~~ 119 (162)
+.|....|++-++..|.+.|.++ ++.+- . ++..+. .-.+|+||.+++++. +.+-+.+
T Consensus 10 r~GqT~kIA~~iA~~L~e~g~qv---------di~dl--~--~~~~~~--------l~~ydavVIgAsI~~~h~~~~~~~ 68 (175)
T COG4635 10 RDGQTRKIAEYIASHLRESGIQV---------DIQDL--H--AVEEPA--------LEDYDAVVIGASIRYGHFHEAVQS 68 (175)
T ss_pred CCCcHHHHHHHHHHHhhhcCCee---------eeeeh--h--hhhccC--------hhhCceEEEecchhhhhhHHHHHH
Confidence 34556789999999999999876 22210 1 111111 225999999999863 4443333
Q ss_pred hhhcchhhhhhhcCCCCCEEEEEEEeCcc
Q 031284 120 SWREMKFFNNIYALVGVPVVTVQLRYNGW 148 (162)
Q Consensus 120 ~~~~~~~~~~l~~l~~~~~~~v~l~~d~~ 148 (162)
.. ..+...|..- .+..+++.|-++++
T Consensus 69 Fv--~k~~e~L~~k-P~A~f~vnl~a~k~ 94 (175)
T COG4635 69 FV--KKHAEALSTK-PSAFFSVNLTARKE 94 (175)
T ss_pred HH--HHHHHHHhcC-CceEEEeehhhccc
Confidence 21 1233344432 23588888887665
No 326
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.06 E-value=1e+02 Score=25.44 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+. ..-.|++..|.++|.+|. -.+..- . . +. .
T Consensus 139 cTp~avi~lL~~y~i~l~Gk~vvVvGrS~--iVGkPla~lL~~~~atVt------~chs~T---~-----n--l~----~ 196 (282)
T PRK14166 139 CTPLGVMKLLKAYEIDLEGKDAVIIGASN--IVGRPMATMLLNAGATVS------VCHIKT---K-----D--LS----L 196 (282)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEE------EeCCCC---C-----C--HH----H
Confidence 46777888888765445566777777654 788999999998876653 221110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|++-+.
T Consensus 197 ~~~~ADIvIsAvGkp~ 212 (282)
T PRK14166 197 YTRQADLIIVAAGCVN 212 (282)
T ss_pred HHhhCCEEEEcCCCcC
Confidence 2457999999998653
No 327
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=36.99 E-value=78 Score=28.61 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHH-cCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce--EEeCCEEEEcCChhH
Q 031284 46 DVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (162)
Q Consensus 46 ~~~l~~~l~~~l~~-~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~--~~~aD~VVsa~~~~~ 112 (162)
+..+...|.+.+.+ .+.+++-+..|.+|..+++ + .+.|+..-.-.+|+ .+.+++||.++.-..
T Consensus 137 G~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 137 GHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG--G--GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhhhhhheecCC--C--cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 44577778888887 7779999999999998863 4 46676543211344 577999999996443
No 328
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=36.50 E-value=1e+02 Score=26.75 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=29.9
Q ss_pred HHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc--eEEeCCEEEEcCChh
Q 031284 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (162)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g--~~~~aD~VVsa~~~~ 111 (162)
...+.+++.|++++.++..- .+. + .+ .|... +| +.+++|++|.|+...
T Consensus 98 ~~~~~~~~~gV~~~~g~a~~---~~~---~--~v-~v~~~---~g~~~~~~~d~lViATGs~ 147 (471)
T PRK06467 98 GLAGMAKGRKVTVVNGLGKF---TGG---N--TL-EVTGE---DGKTTVIEFDNAIIAAGSR 147 (471)
T ss_pred HHHHHHHhCCCEEEEEEEEE---ccC---C--EE-EEecC---CCceEEEEcCEEEEeCCCC
Confidence 34455677899999886432 233 2 22 23222 34 478999999999754
No 329
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=36.27 E-value=1.1e+02 Score=26.43 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+...+.++..|++++.+. ++.+..+++ + ..|.+. +++++.+++|.+|.|+...
T Consensus 104 ~~~~~~~~~~~v~~~~g~-~~~~~~~~~--~----~~v~v~-~~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 104 GGIEGLFKKNKITVLKGR-GSFVGKTDA--G----YEIKVT-GEDETVITAKHVIIATGSE 156 (475)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEecCCCC--C----CEEEEe-cCCCeEEEeCEEEEeCCCC
Confidence 355566777899998765 344433321 2 123333 1134589999999999854
No 330
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.04 E-value=1.1e+02 Score=25.42 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+..+-+.+.+. .+-.|++..|.++|.+|. -++-.- . . +. .
T Consensus 142 cTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~aTVt------~chs~T---~-----~--l~----~ 199 (294)
T PRK14187 142 CTPKGCLYLIKTITRNLSGSDAVVIGRSN--IVGKPMACLLLGENCTVT------TVHSAT---R-----D--LA----D 199 (294)
T ss_pred cCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHhhCCCEEE------EeCCCC---C-----C--HH----H
Confidence 36677778888765455566777777754 789999999999876553 221110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|++-+.
T Consensus 200 ~~~~ADIvVsAvGkp~ 215 (294)
T PRK14187 200 YCSKADILVAAVGIPN 215 (294)
T ss_pred HHhhCCEEEEccCCcC
Confidence 2457999999998653
No 331
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.42 E-value=1.1e+02 Score=25.17 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+- .+-.|++..|.++|.+|. -.+... . - +. .
T Consensus 141 cTp~avi~ll~~y~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~atVt------~chs~T---~-----~--l~----~ 198 (284)
T PRK14177 141 CTPYGMVLLLKEYGIDVTGKNAVVVGRSP--ILGKPMAMLLTEMNATVT------LCHSKT---Q-----N--LP----S 198 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEE------EeCCCC---C-----C--HH----H
Confidence 36777778888765455666777777654 789999999999886653 221110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|++-+.
T Consensus 199 ~~~~ADIvIsAvGk~~ 214 (284)
T PRK14177 199 IVRQADIIVGAVGKPE 214 (284)
T ss_pred HHhhCCEEEEeCCCcC
Confidence 2446999999998653
No 332
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.77 E-value=1.2e+02 Score=24.90 Aligned_cols=74 Identities=12% Similarity=0.197 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+. ..-.|++..|.++|.+|. -.+... . . +. .
T Consensus 140 cTp~av~~lL~~~~i~l~Gk~vvViGrS~--~VGkPla~lL~~~~AtVt------~chs~T---~-----~--l~----~ 197 (278)
T PRK14172 140 CTPNSVITLIKSLNIDIEGKEVVVIGRSN--IVGKPVAQLLLNENATVT------ICHSKT---K-----N--LK----E 197 (278)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHHCCCEEE------EeCCCC---C-----C--HH----H
Confidence 36777788888765455666777777654 789999999999886662 221111 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|++-+.
T Consensus 198 ~~~~ADIvIsAvGkp~ 213 (278)
T PRK14172 198 VCKKADILVVAIGRPK 213 (278)
T ss_pred HHhhCCEEEEcCCCcC
Confidence 2346999999998653
No 333
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=33.55 E-value=29 Score=25.00 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=33.4
Q ss_pred hHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH-Hhhc
Q 031284 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (162)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~-~~~L 116 (162)
.++|.+.-.++|.+|. ++.++ ..|+.-. -+..++-.||.||.++|... ..+-
T Consensus 21 AeaLe~~A~~~g~~IK-------VETqG-------s~G~eN~-LT~edI~~Ad~VI~AaD~~i~~~~f 73 (122)
T COG1445 21 AEALEKAAKKLGVEIK-------VETQG-------AVGIENR-LTAEDIAAADVVILAADIEVDLSRF 73 (122)
T ss_pred HHHHHHHHHHcCCeEE-------EEcCC-------cccccCc-CCHHHHHhCCEEEEEecccccHhHh
Confidence 5788888899999884 34443 2344311 01345667999999999763 4433
No 334
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=33.50 E-value=44 Score=32.10 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=24.7
Q ss_pred eeEeCCCCcccchHHHHHHHHHcCcEEEcCceee
Q 031284 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCR 71 (162)
Q Consensus 38 ~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~ 71 (162)
.++|.--+...+++...+.+++.|+++++|+.|-
T Consensus 347 yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 347 YGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred ccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 3444333445577788889999999999998763
No 335
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.24 E-value=1.3e+02 Score=24.99 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.+..++.+|.++.-.-.+..+-+.+.+- .+-.|++..|.++|.+| +-.+-.. . . +. .
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvVIGrS~--iVGkPla~lL~~~~atV------tv~hs~T---~-----~--l~----~ 197 (297)
T PRK14186 140 CTPAGVMRLLRSQQIDIAGKKAVVVGRSI--LVGKPLALMLLAANATV------TIAHSRT---Q-----D--LA----S 197 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHHCCCEE------EEeCCCC---C-----C--HH----H
Confidence 56778888888765445566777777654 78999999999988666 2221110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|++-+
T Consensus 198 ~~~~ADIvIsAvGkp 212 (297)
T PRK14186 198 ITREADILVAAAGRP 212 (297)
T ss_pred HHhhCCEEEEccCCc
Confidence 234699999999855
No 336
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=33.19 E-value=61 Score=24.85 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHcCcEEEcCceee------EEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCC
Q 031284 47 VYLSGPIRKYITDKGGRFHLRWGCR------EILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (162)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~------~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~ 109 (162)
+.=.+.+++.|+++|.+-.++..-. ++..+. +..-. ..++.||.|..-..
T Consensus 43 ~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R---------~~v~~----~GIy~ADVVLVPLE 98 (178)
T PF02006_consen 43 EERVEKIAELLREHGAEEVLGVNPDASERIPGLDHER---------AKVSK----EGIYSADVVLVPLE 98 (178)
T ss_pred HHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCcc---------ceECc----ccceeccEEEeccC
Confidence 3456899999999999988887433 332221 22222 44889999988763
No 337
>PRK06370 mercuric reductase; Validated
Probab=33.09 E-value=1.1e+02 Score=26.31 Aligned_cols=45 Identities=4% Similarity=-0.010 Sum_probs=30.8
Q ss_pred HHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 52 PIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 52 ~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
...+.+++. |+++++++.+. .++ + + +.+. ++.+.+|++|.|+...
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~---~~~---~--~---v~v~----~~~~~~d~lViATGs~ 144 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARF---ESP---N--T---VRVG----GETLRAKRIFINTGAR 144 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEE---ccC---C--E---EEEC----cEEEEeCEEEEcCCCC
Confidence 445666777 99999998762 233 2 2 3333 5678999999998753
No 338
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.08 E-value=93 Score=25.69 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+. ..-.|++..|.+.| .+-|+.|+-.+... . .+. .
T Consensus 139 cTp~av~~lL~~~~i~l~Gk~vvViGrS~--iVG~Pla~lL~~~~--~~~~AtVt~~hs~t---~-------~l~----~ 200 (286)
T PRK14184 139 CTPAGVMTLLERYGLSPAGKKAVVVGRSN--IVGKPLALMLGAPG--KFANATVTVCHSRT---P-------DLA----E 200 (286)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHhCCc--ccCCCEEEEEeCCc---h-------hHH----H
Confidence 46777778888764444566777777654 78899999998833 11234444443221 0 011 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|+..+
T Consensus 201 ~~~~ADIVI~AvG~p 215 (286)
T PRK14184 201 ECREADFLFVAIGRP 215 (286)
T ss_pred HHHhCCEEEEecCCC
Confidence 345799999999754
No 339
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.87 E-value=1.3e+02 Score=24.85 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.++.++.-.-.+...-+.+.+- ..-.|++..|.++|.+| +-.+... . .+. .
T Consensus 146 cTp~av~~ll~~~~i~l~Gk~vvViGrs~--iVGkPla~lL~~~~atV------tv~hs~T---~-------~l~----~ 203 (287)
T PRK14176 146 CTPHGVIRALEEYGVDIEGKNAVIVGHSN--VVGKPMAAMLLNRNATV------SVCHVFT---D-------DLK----K 203 (287)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCc--ccHHHHHHHHHHCCCEE------EEEeccC---C-------CHH----H
Confidence 36666777777654344566777776644 78899999999988665 2221111 0 011 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|+..+
T Consensus 204 ~~~~ADIvv~AvG~p 218 (287)
T PRK14176 204 YTLDADILVVATGVK 218 (287)
T ss_pred HHhhCCEEEEccCCc
Confidence 245799999998865
No 340
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.95 E-value=1.4e+02 Score=24.59 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.+..++.+|..+.-.-.+...-+.+.+. .+-.|++..|.++|.+|..-+ -.- . . +. .
T Consensus 137 cTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~aTVtich------s~T---~-----~--l~----~ 194 (287)
T PRK14173 137 CTPAGVVRLLKHYGIPLAGKEVVVVGRSN--IVGKPLAALLLREDATVTLAH------SKT---Q-----D--LP----A 194 (287)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCC--ccHHHHHHHHHHCCCEEEEeC------CCC---C-----C--HH----H
Confidence 36677777777654444566777777654 788999999999887664211 000 0 0 11 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|++-+
T Consensus 195 ~~~~ADIvIsAvGkp 209 (287)
T PRK14173 195 VTRRADVLVVAVGRP 209 (287)
T ss_pred HHhhCCEEEEecCCc
Confidence 244699999999865
No 341
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.93 E-value=1.8e+02 Score=25.88 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=57.2
Q ss_pred CccccHHHHHHHHHHHHh---ccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 031284 14 CDNISARCMLTIFALFAT---KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (162)
Q Consensus 14 ~~~~Sa~~~~~~l~~~~~---~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~ 90 (162)
++..++---+...+.|++ +-....+.||-=|.++ |.+..-|...=-||-..++.+|+.|..+. ++.+++.+..
T Consensus 251 ~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk---~s~~~~~~l~ 326 (547)
T KOG4405|consen 251 ESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDK---ESLDCKAILD 326 (547)
T ss_pred cccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecc---cccchhhhHh
Confidence 333455554555555543 3345578888766655 89999999889999999999999999986 3112121211
Q ss_pred EecCCceEEeCCEEEEc
Q 031284 91 SKATDKKVVQADAYVAA 107 (162)
Q Consensus 91 ~~~~~g~~~~aD~VVsa 107 (162)
. .|..+.+.++|+.
T Consensus 327 s---~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 327 S---FGQRINAKNFVVS 340 (547)
T ss_pred h---hcchhcceeeeec
Confidence 2 5666777776665
No 342
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.02 E-value=1.6e+02 Score=24.21 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+. .+-.|++..|.++|.+|.. .+... . . +. .
T Consensus 139 cTp~avi~ll~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~AtVti------chs~T---~-----n--l~----~ 196 (282)
T PRK14182 139 CTPAGVMRMLDEARVDPKGKRALVVGRSN--IVGKPMAMMLLERHATVTI------AHSRT---A-----D--LA----G 196 (282)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEE------eCCCC---C-----C--HH----H
Confidence 46777888888764345566777777755 7899999999988765532 21110 0 0 11 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|++.+
T Consensus 197 ~~~~ADIvI~AvGk~ 211 (282)
T PRK14182 197 EVGRADILVAAIGKA 211 (282)
T ss_pred HHhhCCEEEEecCCc
Confidence 344799999999854
No 343
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=29.82 E-value=79 Score=27.11 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceE-EEEEEEecCCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYV-KGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v-~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
.+...+.+-++.+||++.+|-+|++|..++. + .- --+++..+ .+++++...||..+..+
T Consensus 197 ~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~--~--~~~Ypivv~ng-k~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 197 SVTLSFGEDFDFMGGRIYTNFRLQGIAQNKE--A--TFSYPIVVLNG-KGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred HHHHHHHHHHHHhcccccccceeccchhccC--C--CCCCceEEecC-ccceeEEeEEEEecccc
Confidence 3567788889999999999999999987652 1 00 02333322 46788888888887754
No 344
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=29.31 E-value=2.1e+02 Score=22.32 Aligned_cols=47 Identities=11% Similarity=0.318 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHHh---------ccccceeeEeCCCCcccchHHHHHHHHHcCcEEE
Q 031284 17 ISARCMLTIFALFAT---------KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~---------~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~ 65 (162)
+.++.++.+|.++.- .-.+..+-+.+.+ ..+-.|++..|.++|.+|.
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS--~iVGkPla~lL~~~~AtVt 90 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRS--EVVGRPLAALLANDGARVY 90 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCC--ccchHHHHHHHHHCCCEEE
Confidence 466777777776521 3445566777664 4889999999999886653
No 345
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=29.00 E-value=26 Score=29.93 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=25.4
Q ss_pred ceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 68 WGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 68 ~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
.+|++++.++| .|++. +|++|+.|..|.|+.++.
T Consensus 112 ekv~~f~P~~N--------~v~t~---gg~eIsYdylviA~Giql 145 (446)
T KOG3851|consen 112 EKVKEFNPDKN--------TVVTR---GGEEISYDYLVIAMGIQL 145 (446)
T ss_pred HHHHhcCCCcC--------eEEcc---CCcEEeeeeEeeeeecee
Confidence 55666666652 35555 789999999999999875
No 346
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=28.90 E-value=91 Score=27.06 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=40.8
Q ss_pred ccchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 47 VYLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 47 ~~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
+.+.-++.+.+...+ +++ ...+|+.|..++ + .|.++ +++.++.|..|.++....
T Consensus 57 ~~i~~p~~~~~~~~~~v~~-~~~~V~~ID~~~---k-----~V~~~---~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 57 SEIAIPLRALLRKSGNVQF-VQGEVTDIDRDA---K-----KVTLA---DLGEISYDYLVVALGSET 111 (405)
T ss_pred hheeccHHHHhcccCceEE-EEEEEEEEcccC---C-----EEEeC---CCccccccEEEEecCCcC
Confidence 567889999999887 544 446799998886 3 35565 567899999999988653
No 347
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=28.64 E-value=1.3e+02 Score=21.08 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHH-H--HhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCce
Q 031284 21 CMLTIFAL-F--ATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWG 69 (162)
Q Consensus 21 ~~~~~l~~-~--~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~ 69 (162)
...+.+.. | +...+....-+..|. ..+.+.+++++.||+|+.++.
T Consensus 61 ~~R~QiK~TieaA~q~gkka~f~F~~~----v~~kv~eY~e~~G~~Vii~t~ 108 (109)
T PF15647_consen 61 KTRNQIKATIEAAEQQGKKAYFWFKGE----VHDKVKEYIERYGGKVIIDTK 108 (109)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccc----ccHHHHHHHHHcCcEEEecCC
Confidence 34444442 3 344445545556665 457899999999999998763
No 348
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.94 E-value=1.3e+02 Score=24.91 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|..+.-.-.+..+-+.+.+. .+-.|++..|.++|.. .|+.|+-.+... . . +. .
T Consensus 143 cTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~~~--~~atVtv~hs~T---~-----~--l~----~ 204 (297)
T PRK14168 143 CTPAGIQEMLVRSGVETSGAEVVVVGRSN--IVGKPIANMMTQKGPG--ANATVTIVHTRS---K-----N--LA----R 204 (297)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cccHHHHHHHHhcccC--CCCEEEEecCCC---c-----C--HH----H
Confidence 35777777777664445566777777654 7889999999987521 123333322111 0 0 11 2
Q ss_pred eEEeCCEEEEcCChhH
Q 031284 97 KVVQADAYVAACDVPG 112 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~~ 112 (162)
..-+||.||+|+..+.
T Consensus 205 ~~~~ADIvVsAvGkp~ 220 (297)
T PRK14168 205 HCQRADILIVAAGVPN 220 (297)
T ss_pred HHhhCCEEEEecCCcC
Confidence 2347999999998653
No 349
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=27.82 E-value=34 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=23.4
Q ss_pred cccchHHHHHHHHHcCcEEEcCceeeEEE
Q 031284 46 DVYLSGPIRKYITDKGGRFHLRWGCREIL 74 (162)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~ 74 (162)
...++++..+.|+++|+++-+...|-.|.
T Consensus 73 A~viS~~Al~~L~~~gI~v~y~~~Vp~I~ 101 (134)
T PF08973_consen 73 ADVISEPALDLLEEAGIKVSYDELVPYII 101 (134)
T ss_dssp EEEEEHHHHHHHHHTT--EEEEEEESS-B
T ss_pred HHHHhHHHHHHHHHcCCceeHhhhhhhhc
Confidence 35789999999999999999999999885
No 350
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=27.56 E-value=71 Score=24.02 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHH-HHhccccceeeEeCCCCcccchHHHHHHHHHcCcEE
Q 031284 16 NISARCMLTIFAL-FATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRF 64 (162)
Q Consensus 16 ~~Sa~~~~~~l~~-~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i 64 (162)
..|...+...+.. .......+++.+.+.+++..++=.+++.|+++|-++
T Consensus 45 ~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v 94 (229)
T PF00975_consen 45 PDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEAGEEV 94 (229)
T ss_dssp ESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHTT-SE
T ss_pred CCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHhhhcc
Confidence 4466666666665 444344448888888888899999999999997654
No 351
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=27.51 E-value=61 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEecCCceEEeCCEEEEcCChhHHhhcCC
Q 031284 88 LAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (162)
Q Consensus 88 v~~~~~~~g~~~~aD~VVsa~~~~~~~~Ll~ 118 (162)
|++. ||+.+++|.||.++....--.+|+
T Consensus 267 V~f~---DG~~~~~D~Ii~~TGy~~~~pfL~ 294 (461)
T PLN02172 267 IVFK---NGKVVYADTIVHCTGYKYHFPFLE 294 (461)
T ss_pred EEEC---CCCCccCCEEEECCcCCccccccC
Confidence 5565 788889999999999764333554
No 352
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=26.64 E-value=46 Score=30.85 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=20.5
Q ss_pred CcccchHHHHHHHHHcCcEEEcCcee
Q 031284 45 PDVYLSGPIRKYITDKGGRFHLRWGC 70 (162)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (162)
+...+.+...+.+++.|+++++|+.|
T Consensus 479 lp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 479 LPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 34456677778899999999999876
No 353
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.57 E-value=2e+02 Score=23.76 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCc
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g 96 (162)
+.++.++.+|.++.-.-.+...-+.+.+. .+-.|++..|.+.|.+|.. . ... . .. +. .
T Consensus 141 cTp~av~~lL~~y~i~l~GK~vvViGrS~--iVGkPla~lL~~~~ATVti------c-hs~---T----~~--L~----~ 198 (288)
T PRK14171 141 CTALGCLAVIKKYEPNLTGKNVVIIGRSN--IVGKPLSALLLKENCSVTI------C-HSK---T----HN--LS----S 198 (288)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEEEE------e-CCC---C----CC--HH----H
Confidence 46666777887764445566777777654 7889999999998866621 1 111 0 00 11 2
Q ss_pred eEEeCCEEEEcCChh
Q 031284 97 KVVQADAYVAACDVP 111 (162)
Q Consensus 97 ~~~~aD~VVsa~~~~ 111 (162)
..-+||.||+|++-+
T Consensus 199 ~~~~ADIvV~AvGkp 213 (288)
T PRK14171 199 ITSKADIVVAAIGSP 213 (288)
T ss_pred HHhhCCEEEEccCCC
Confidence 234699999999854
No 354
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=26.55 E-value=33 Score=21.27 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=25.7
Q ss_pred cceeeEeCCCCcccchHHHHHHHHHcC-cEEEcCc
Q 031284 35 ASLLRMLKGSPDVYLSGPIRKYITDKG-GRFHLRW 68 (162)
Q Consensus 35 ~~~~~~~~g~~~~~l~~~l~~~l~~~G-g~i~~~~ 68 (162)
...++.+.|.++......+++..++.| +.+++.+
T Consensus 11 ~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~ 45 (69)
T PF03460_consen 11 MVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTT 45 (69)
T ss_dssp EEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEET
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECC
Confidence 346677788888888899999999988 7776543
No 355
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=26.50 E-value=50 Score=21.40 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=22.1
Q ss_pred CCcccchHHHHHHHHHcCcEEEcCce
Q 031284 44 SPDVYLSGPIRKYITDKGGRFHLRWG 69 (162)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~ 69 (162)
+++..|++.+.++++++|-+|...|+
T Consensus 38 Gia~~L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 38 GIAKKLVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHTT-EEEETSH
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEECH
Confidence 67788999999999999999987765
No 356
>PRK08818 prephenate dehydrogenase; Provisional
Probab=26.32 E-value=66 Score=27.47 Aligned_cols=62 Identities=5% Similarity=0.086 Sum_probs=36.0
Q ss_pred ceeeEeCC-CCcccchHHHHHHHHHc-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhHH
Q 031284 36 SLLRMLKG-SPDVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGI 113 (162)
Q Consensus 36 ~~~~~~~g-~~~~~l~~~l~~~l~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~~ 113 (162)
..+++.++ |+ |-..+++.|++. |.+ |..+...++ + . ... ....-.||.||.++|+..+
T Consensus 5 ~~I~IIGl~Gl---iGgslA~alk~~~~~~------V~g~D~~d~--~------~-~~~--~~~v~~aDlVilavPv~~~ 64 (370)
T PRK08818 5 PVVGIVGSAGA---YGRWLARFLRTRMQLE------VIGHDPADP--G------S-LDP--ATLLQRADVLIFSAPIRHT 64 (370)
T ss_pred CEEEEECCCCH---HHHHHHHHHHhcCCCE------EEEEcCCcc--c------c-CCH--HHHhcCCCEEEEeCCHHHH
Confidence 35677776 55 778888888864 444 444433221 1 0 110 0113369999999999866
Q ss_pred hhcC
Q 031284 114 KRLL 117 (162)
Q Consensus 114 ~~Ll 117 (162)
..++
T Consensus 65 ~~~l 68 (370)
T PRK08818 65 AALI 68 (370)
T ss_pred HHHH
Confidence 4433
No 357
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=25.96 E-value=2.8e+02 Score=26.81 Aligned_cols=58 Identities=12% Similarity=-0.083 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHcC-cEEEcCceeeEEEeccCCCCcceEEEEEEEe-------c----CCceEEeCCEEEEcCChh
Q 031284 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSK-------A----TDKKVVQADAYVAACDVP 111 (162)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~-------~----~~g~~~~aD~VVsa~~~~ 111 (162)
.+.+.+.+.+++.+ +++++++.|..|... + .+..+.... + +.-..+.+|+||.|+...
T Consensus 216 ~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~----~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~ 285 (985)
T TIGR01372 216 DWAAATVAELTAMPEVTLLPRTTAFGYYDH----N--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAH 285 (985)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEecC----C--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCC
Confidence 34566777777775 999999999998543 2 232221100 0 011258899999998753
No 358
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=25.47 E-value=1.4e+02 Score=29.26 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHcCcEEEcCceeeEEEec
Q 031284 48 YLSGPIRKYITDKGGRFHLRWGCREILYD 76 (162)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~ 76 (162)
.+.+.-.+.+++.|+++++|+.| .+.++
T Consensus 590 evL~~die~l~~~GVe~~~gt~V-di~le 617 (1019)
T PRK09853 590 ELIQHDIEFVKAHGVKFEFGCSP-DLTVE 617 (1019)
T ss_pred HHHHHHHHHHHHcCCEEEeCcee-EEEhh
Confidence 34556667888999999999988 34443
No 359
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=25.27 E-value=2.6e+02 Score=20.25 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce
Q 031284 18 SARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK 97 (162)
Q Consensus 18 Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~ 97 (162)
.+..++..++.+.-.-.+..+.+.+.+. ..-++++..|.++|.++. -.+... . .+. +.
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~--~vG~pla~lL~~~gatV~------~~~~~t---~-------~l~----~~ 68 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSG--IVGAPLQCLLQRDGATVY------SCDWKT---I-------QLQ----SK 68 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCc--hHHHHHHHHHHHCCCEEE------EeCCCC---c-------CHH----HH
Confidence 3455566666654345577888887755 789999999998876552 221110 0 011 23
Q ss_pred EEeCCEEEEcCChh
Q 031284 98 VVQADAYVAACDVP 111 (162)
Q Consensus 98 ~~~aD~VVsa~~~~ 111 (162)
.-.||.||+++...
T Consensus 69 v~~ADIVvsAtg~~ 82 (140)
T cd05212 69 VHDADVVVVGSPKP 82 (140)
T ss_pred HhhCCEEEEecCCC
Confidence 44699999999865
No 360
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=25.15 E-value=71 Score=28.07 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=27.5
Q ss_pred eeeEeCCCCcccchHHHHHHHHHcCcEEEcCceee
Q 031284 37 LLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCR 71 (162)
Q Consensus 37 ~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~ 71 (162)
.+++|.-=+...+++...+.|++.|++|++|++|-
T Consensus 163 ~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 163 LYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred EecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 33444333556788999999999999999999996
No 361
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.16 E-value=2.4e+02 Score=23.32 Aligned_cols=47 Identities=4% Similarity=0.049 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEE
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~ 65 (162)
+.+..++.+|.++.-.-.+..+.+.+.+- .+-.||+..|.+.|.++.
T Consensus 140 cTp~ai~~ll~~~~i~~~Gk~V~viGrs~--~mG~PmA~~L~~~g~tVt 186 (296)
T PRK14188 140 CTPLGCMMLLRRVHGDLSGLNAVVIGRSN--LVGKPMAQLLLAANATVT 186 (296)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEEcCCc--chHHHHHHHHHhCCCEEE
Confidence 34777788888765456677888887543 789999999999987663
No 362
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.06 E-value=3e+02 Score=22.85 Aligned_cols=47 Identities=6% Similarity=0.040 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEE
Q 031284 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFH 65 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~ 65 (162)
+.++.++.+|..+.-.-.+..+++.+.+- .+-.||+..|.+.|.++.
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s~--ivG~PmA~~L~~~gatVt 187 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRSN--IVGKPMAALLLQAHCSVT 187 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCCC--ccHHHHHHHHHHCCCEEE
Confidence 35777788888765556677889987643 688999999999997764
No 363
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=21.18 E-value=2.4e+02 Score=23.98 Aligned_cols=75 Identities=9% Similarity=0.114 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC
Q 031284 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (162)
Q Consensus 16 ~~Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~ 95 (162)
=+.++.++.+|.++.-.-.+..+-+.+.+- .+-.|++..|.++|.+| +-++..- . . +.
T Consensus 195 PCTp~avi~LL~~~~i~l~GK~vvVIGRS~--iVGkPla~LL~~~~ATV------TicHs~T---~-----n--l~---- 252 (345)
T PLN02897 195 SCTPKGCVELLIRSGVEIAGKNAVVIGRSN--IVGLPMSLLLQRHDATV------STVHAFT---K-----D--PE---- 252 (345)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cccHHHHHHHHHCCCEE------EEEcCCC---C-----C--HH----
Confidence 356677777787664444566666776644 78899999999987665 2221110 0 0 11
Q ss_pred ceEEeCCEEEEcCChhH
Q 031284 96 KKVVQADAYVAACDVPG 112 (162)
Q Consensus 96 g~~~~aD~VVsa~~~~~ 112 (162)
...-+||.||+|++.+.
T Consensus 253 ~~~~~ADIvIsAvGkp~ 269 (345)
T PLN02897 253 QITRKADIVIAAAGIPN 269 (345)
T ss_pred HHHhhCCEEEEccCCcC
Confidence 22447999999999653
No 364
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=21.06 E-value=2.9e+02 Score=19.46 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHhc---cccceeeEeCCCCcccchHHHHHHHHHcCcEEEc
Q 031284 17 ISARCMLTIFALFATK---TEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHL 66 (162)
Q Consensus 17 ~Sa~~~~~~l~~~~~~---~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~ 66 (162)
..+..+...|..++.. ...--++.=.-..+..+.+.+++-|.+.|++|+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~ 73 (137)
T PF02878_consen 21 EFAARLAQAFASYLKEKGNGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVID 73 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEEcccCCHHHHHHHHHHHHhhccccccc
Confidence 3455566666665543 2222444445567889999999999999999863
No 365
>PRK07846 mycothione reductase; Reviewed
Probab=20.96 E-value=2e+02 Score=24.85 Aligned_cols=41 Identities=15% Similarity=-0.033 Sum_probs=26.2
Q ss_pred HHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChh
Q 031284 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (162)
Q Consensus 57 l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~ 111 (162)
+++.|++++.+...-. ++ + .|.+. +|+.+++|++|.|+...
T Consensus 99 ~~~~~v~~~~g~a~~~---~~---~-----~V~v~---~g~~~~~d~lViATGs~ 139 (451)
T PRK07846 99 RDTPNIDVYRGHARFI---GP---K-----TLRTG---DGEEITADQVVIAAGSR 139 (451)
T ss_pred hhhCCcEEEEEEEEEe---cC---C-----EEEEC---CCCEEEeCEEEEcCCCC
Confidence 4556777776654332 32 2 24444 56789999999999753
No 366
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=20.64 E-value=3.5e+02 Score=20.16 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhccccceeeEeCCCCcccchHHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCce
Q 031284 18 SARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK 97 (162)
Q Consensus 18 Sa~~~~~~l~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~ 97 (162)
.+..++.+|.++.-.-.+...-+.+.+. .+-.|++..|.++|.++ +-.+.... . +. ..
T Consensus 19 Tp~aii~lL~~~~~~l~Gk~v~VvGrs~--~VG~Pla~lL~~~~atV------t~~h~~T~--~--------l~----~~ 76 (160)
T PF02882_consen 19 TPLAIIELLEYYGIDLEGKKVVVVGRSN--IVGKPLAMLLLNKGATV------TICHSKTK--N--------LQ----EI 76 (160)
T ss_dssp HHHHHHHHHHHTT-STTT-EEEEE-TTT--TTHHHHHHHHHHTT-EE------EEE-TTSS--S--------HH----HH
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEECCcC--CCChHHHHHHHhCCCeE------EeccCCCC--c--------cc----ce
Confidence 6677778888765455666777777754 78899999999996655 22222110 0 11 12
Q ss_pred EEeCCEEEEcCChhH
Q 031284 98 VVQADAYVAACDVPG 112 (162)
Q Consensus 98 ~~~aD~VVsa~~~~~ 112 (162)
.-+||.||++++.+.
T Consensus 77 ~~~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 77 TRRADIVVSAVGKPN 91 (160)
T ss_dssp HTTSSEEEE-SSSTT
T ss_pred eeeccEEeeeecccc
Confidence 346999999998653
No 367
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=20.38 E-value=1.1e+02 Score=22.82 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCceEEeCCEEEEcCChhH
Q 031284 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (162)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~gv~~~~~~~g~~~~aD~VVsa~~~~~ 112 (162)
..-.+.|++.|++|+.+-.++++.-.. ... .-.+|.||.|-|-..
T Consensus 43 ~~nl~~L~~~g~~V~~~VDat~l~~~~-----------~~~------~~~FDrIiFNFPH~G 87 (166)
T PF10354_consen 43 EENLEELRELGVTVLHGVDATKLHKHF-----------RLK------NQRFDRIIFNFPHVG 87 (166)
T ss_pred HHHHHHHhhcCCccccCCCCCcccccc-----------ccc------CCcCCEEEEeCCCCC
Confidence 356677799999999999988884432 111 225999999988543
Done!