BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031285
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC C + P +EK + Y P+ FY +D
Sbjct: 2 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 56
Query: 143 VN 144
V+
Sbjct: 57 VD 58
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC C + P +EK + Y P+ FY +D
Sbjct: 8 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VN 144
V+
Sbjct: 63 VD 64
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC C + P +EK A Y FY +D
Sbjct: 2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAV 146
V+ V
Sbjct: 58 VDEV 61
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC C + P +EK A Y FY +D
Sbjct: 9 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 64
Query: 143 VNAV 146
V+ V
Sbjct: 65 VDEV 68
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S+FD IA+ D+ V++ + A+WC + P +EK + Y P+ FY +D
Sbjct: 8 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPSKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VN 144
V+
Sbjct: 63 VD 64
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + + A+WC C + P LE+LAADY + +DV+ P
Sbjct: 9 TDADFDSKVESGVQL-----VDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC C + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
E ++ + A WC C+ L P +E+LA DY P++ F ++ + P + AR GVM
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDY-PQVGFGKLNSDENP-DIAARYGVM 68
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC C + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
D+ V++ + A+WC C + P LE +AA+Y ++ ++++ P A+ GVM
Sbjct: 23 DKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP-GTAAKYGVM 76
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 98 EAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
E +Q + +II++ SWC+ C +KP E++A+ +RF +D
Sbjct: 12 EVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDA 57
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC + P +EK A Y FY +D
Sbjct: 10 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLD 65
Query: 143 VNAV 146
V+ V
Sbjct: 66 VDEV 69
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
+T + S S++D +A +L V++ + A+WC + P +EK A Y FY +D
Sbjct: 2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAV 146
V+ V
Sbjct: 58 VDEV 61
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
V++ + A WC C L P+LEK+ A H ++ VD++
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
I S++ +D +A+ ++ + +++ + A+WC C + P E L+ DY ++ F
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIF 59
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
++ +FD + +A++ + VII + ASWC C ++ P + A + P F VDV+
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF-PGAVFLKVDVD 76
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
D+ I+ + A WC C + P LE+L+ +Y ++ Y V+V+ P
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE 96
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
D+ I+ + A WC C + P LE+L+ +Y ++ Y V+V+ P
Sbjct: 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE 96
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
+ S+++FD +I++ +E VI+ + A WC C + P E+ + Y ++ F VDV+
Sbjct: 13 VTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDE 67
Query: 146 VPH 148
V
Sbjct: 68 VSE 70
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
E F + +A A ++ + A WC C + P LE+LA D+ RL+ V+V+ P
Sbjct: 40 EKGFAQEVAGAPL----TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG 95
Query: 149 KLVARAGV 156
L AR GV
Sbjct: 96 -LAARYGV 102
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
I S++ +D +A+ ++ + +++ + A+WC C + P E L+ DY ++ F
Sbjct: 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIF 59
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 85 PIGSESQFDRVIAEAQQ---LDES--VIIVWMASWCRKCIYLKPKLEKLAADY 132
P+GSE V+A+ LD++ V+I + A WC C L PK E+L A Y
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALY 54
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++ FD + +A D ++++ + A WC C + P L+++A DY +L ++++ P
Sbjct: 8 TDDSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV 151
FD I + ++ V++ + A WC C+ L P +E+LA DY P++ F ++ +
Sbjct: 16 FDEFITK----NKIVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEE-SQDIA 69
Query: 152 ARAGVM 157
R G+M
Sbjct: 70 MRYGIM 75
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+WC + P LE+LAADY + +DV+ P
Sbjct: 10 TDADFDSKVESGVQL----VDFW-ATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADYHPRLRFYNVDVN 144
I S QF +V D+ V+I + A+WC C + P EK++ ++ FY VDV+
Sbjct: 20 ISSYDQFKQVTGG----DKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
++ +FD +A + + VII + ASWC C + P + A + P F VDV+
Sbjct: 13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF-PGAIFLKVDVD 68
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
++++F+ + +A+Q V++ + ASWC C + P + A Y RL+ ++++ P
Sbjct: 13 TDAEFESEVLKAEQ---PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
+++ FD + QL + W A+ C C + P LE+LAADY + +DV+ P
Sbjct: 9 TDADFDSKVESGVQL----VDFW-ATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
D+ I+ + A WC C + P L++LA +Y ++ Y VD
Sbjct: 38 DKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTE 79
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 100 QQLDES------VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
Q DE+ V++ + A WC C + P LE++A +Y +L +DV+ P
Sbjct: 10 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 100 QQLDES------VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
Q DE+ V++ + A WC C + P LE++A +Y +L +DV+ P
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 88 SESQFDRVIAEAQQLDESVIIVW-MASWCRKCIYLKPKLEKLAADY 132
S + D + + V+I+W MA+WC C+Y+ L++L Y
Sbjct: 21 SLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY 66
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 94 RVIAEAQQLDESV--------IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
RV+A A L++ + ++ + A WC C + PK+E LA + P + F VDV+
Sbjct: 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVD 59
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
+ S Q+ I EA + V+I + ASWC C + P LA + P F VDV+
Sbjct: 17 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF-PNAVFLKVDVD 74
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158
D+ V++ WC C + PK EKLA +Y + F +D N L G+ V
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRV 79
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158
D+ V++ WC C + PK EKLA +Y + F +D N L G+ V
Sbjct: 37 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRV 91
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
V++ + A+WC C + P LE++A + L +DV+ P
Sbjct: 28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 70
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
V++ + A+WC C + P LE++A + L +DV+ P
Sbjct: 33 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE 75
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 104 ESVIIV-WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
E V++ + A WC C + P LE+L + +L+ +DV+ + + GVM
Sbjct: 17 EGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDE-NQETAGKYGVM 70
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
V+ + + + C+ L P LE LAA YH + +D +A + A+ G+
Sbjct: 29 VLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDA-EQXIAAQFGL 78
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDVN
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVN 60
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-- 144
S QF +++E + + + W A WC C ++ +EK+A ++ P ++F VD +
Sbjct: 26 SVEQFRNIMSE-----DILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNN 79
Query: 145 ----------AVPHKLVARAGVMVSLMI 162
+P ++AR+G M+ +I
Sbjct: 80 SEIVSKCRVLQLPTFIIARSGKMLGHVI 107
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
Q D +I + A WC C P + AA+ ++RF V+ A P
Sbjct: 53 QDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP 99
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 99 AQQLDES----VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
+QL+E+ V+I + A+WC C + PKLE+L+ + F VDV+
Sbjct: 12 TKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVD 60
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVD 60
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAA---DYHPRLRFYNVDVN 144
++ FD +A+ ++V++ + A WC C P+ EK+A+ D P + +D
Sbjct: 23 NDGNFDNFVADK----DTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 145 AV 146
+
Sbjct: 79 SA 80
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 82 PLTPIGS-ESQFDRVIAEAQQLDES--------------VIIVWMASWCRKCIYLKPKLE 126
PLTP+ + + R+ + +L ++ +++ + A WC+ C +++
Sbjct: 6 PLTPLNRFDKYYLRMFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMD 65
Query: 127 KLAADYHPRLRFYNVDVN 144
KL Y R+ VD++
Sbjct: 66 KLQKYYGKRIYLLKVDLD 83
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
V++ + A+WC C + PKL +L+ + + VDV+
Sbjct: 28 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD 66
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
V++ + A+WC C + PKL +L+ + + VDV+
Sbjct: 23 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD 61
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA 129
+++ FD +A+ ++V++ + A WC C P+ EK+A
Sbjct: 21 NDANFDNFVADK----DTVLLEFYAPWCGHCKQFAPEYEKIA 58
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 30.0 bits (66), Expect = 0.58, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 16/130 (12%)
Query: 33 RILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQF 92
R++ I +++ S +G + N + EG +K L+ED A + PL +E++
Sbjct: 208 RVVKIMGGSLSNSTVIKGMVFN----REPEGHVKSLSEDKKHKVAVFTCPLDIANTETKG 263
Query: 93 DRVIAEAQQL------DESVIIVWM---ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
++ AQ++ +E I M A +CI + +LA Y R Y + V
Sbjct: 264 TVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNR---YGILV 320
Query: 144 NAVPHKLVAR 153
VP K R
Sbjct: 321 LKVPSKFELR 330
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL----EKLAADYHPRLRFYNVDVNAV 146
FD ++ ++ V+I + A WC C L+PK EKL+ D + + + N V
Sbjct: 36 NFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDV 92
Query: 147 PHKLVARA 154
P R
Sbjct: 93 PSPYEVRG 100
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF 138
F+ + E Q + V+ + W R YL KL+ +AA + P LR
Sbjct: 347 FELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRM 393
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
+ S Q+ I EA + V+I + ASWC + P LA + P F VDV+
Sbjct: 20 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKF-PNAVFLKVDVD 77
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA 129
FD ++ ++ V+I + A WC C L+PK ++L
Sbjct: 361 NFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELG 396
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158
D+ V++ WC + PK EKLA +Y + F +D N L G+ V
Sbjct: 24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRV 78
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC C +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|1TD6|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Mp506MPN330 (GI: 1674200)FROM MYCOPLASMA PNEUMONIAE
Length = 306
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 52 IDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWM 111
++++ + KH S KEL E +D H LT QFD+V+ +Q D
Sbjct: 21 VNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFL-HQFDKVMELVKQKD----FKTA 75
Query: 112 ASWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVARAGVMVS 159
S C E+LAA Y P+ + F+ + V H L+ + ++
Sbjct: 76 QSRCE---------EELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALA 116
>pdb|4HKQ|A Chain A, Protein Dna Complex
Length = 681
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
F+ + E Q + V+ + W R YL KL+ +AA + P LR
Sbjct: 376 FELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLR 421
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
V++ + A+WC + P LE++A + L +DV+ P
Sbjct: 30 VLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPE 72
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 100 QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
Q ++ V++ + A+WC C + P ++L+ Y F VDV+ +
Sbjct: 30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKLEE 76
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 100 QQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH 148
Q ++ V++ + A+WC C + P ++L+ Y F VDV+ +
Sbjct: 21 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--IFVKVDVDKLEE 67
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
+ ++ + C C + P LE+L +Y FY VDV
Sbjct: 24 ACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDV 62
>pdb|2B4G|A Chain A, Dihydroorotate Dehydrogenase
pdb|2B4G|B Chain B, Dihydroorotate Dehydrogenase
pdb|2B4G|C Chain C, Dihydroorotate Dehydrogenase
pdb|2B4G|D Chain D, Dihydroorotate Dehydrogenase
Length = 317
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 24 QSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELN 69
Q+ D P LS+S ++ +SV + ++ +TK +G+I ELN
Sbjct: 90 QTHDYSRKPLFLSMSGLSVEESVEM---VKKLVPITKEKGTILELN 132
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 105 SVIIVWMASWCRKCIYLKPKLEKLAADY 132
+V + + A WC C L P +KL Y
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGETY 296
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY 132
I S++ F + A D+ V++ + A+WC C +KP L+ Y
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 75 DHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD 131
D ++P T ++ +R + + D+ +I + ASWC C+ + EK A D
Sbjct: 10 DAGTATVPHTXSTXKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQD 66
>pdb|1MDO|A Chain A, Crystal Structure Of Arnb Aminotransferase With Pyridomine
5' Phosphate
Length = 393
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 80 SIPLTPIGSESQFDRVIAEAQQL 102
S+PL P +ES FDRVI Q+
Sbjct: 360 SLPLFPDXTESDFDRVITALHQI 382
>pdb|1MDX|A Chain A, Crystal Structure Of Arnb Transferase With Pyridoxal 5'
Phosphate
pdb|1MDZ|A Chain A, Crystal Structure Of Arnb Aminotransferase With
Cycloserine And Pyridoxal 5' Phosphate
Length = 393
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 80 SIPLTPIGSESQFDRVIAEAQQL 102
S+PL P +ES FDRVI Q+
Sbjct: 360 SLPLFPDMTESDFDRVITALHQI 382
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPAKMIKPFFHSLSEKY-SNVIFLEVDVD 60
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
I S++ F + A D+ V++ + A+WC +KP L+ Y + F VDV+
Sbjct: 5 IESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVD 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,564,488
Number of Sequences: 62578
Number of extensions: 169029
Number of successful extensions: 520
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 80
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)