Query 031285
Match_columns 162
No_of_seqs 190 out of 1585
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 1.1E-21 2.3E-26 143.3 6.9 77 82-162 43-119 (150)
2 cd02954 DIM1 Dim1 family; Dim1 99.8 1.2E-20 2.5E-25 133.3 8.7 71 89-162 2-72 (114)
3 PHA02278 thioredoxin-like prot 99.8 1.2E-19 2.5E-24 126.4 8.3 71 87-162 2-76 (103)
4 PRK10996 thioredoxin 2; Provis 99.8 3.4E-19 7.3E-24 130.1 10.1 103 55-162 1-110 (139)
5 cd02985 TRX_CDSP32 TRX family, 99.8 3.3E-19 7.2E-24 123.6 8.9 71 88-162 2-75 (103)
6 KOG0907 Thioredoxin [Posttrans 99.8 1.9E-19 4.2E-24 125.8 7.5 70 91-162 9-78 (106)
7 PLN00410 U5 snRNP protein, DIM 99.8 5.3E-19 1.2E-23 129.2 8.9 76 83-161 5-80 (142)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.8 5.9E-19 1.3E-23 124.7 7.9 73 88-162 15-88 (113)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 8.6E-19 1.9E-23 120.6 8.4 70 88-162 7-76 (101)
10 COG3118 Thioredoxin domain-con 99.8 7.9E-19 1.7E-23 140.5 9.0 77 83-162 25-101 (304)
11 cd02948 TRX_NDPK TRX domain, T 99.8 2E-18 4.3E-23 119.4 8.9 72 85-162 3-75 (102)
12 cd02986 DLP Dim1 family, Dim1- 99.8 2.4E-18 5.3E-23 121.0 8.8 71 89-162 2-72 (114)
13 cd02999 PDI_a_ERp44_like PDIa 99.8 2.1E-18 4.5E-23 119.2 8.0 69 90-162 7-76 (100)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.9E-18 6.3E-23 118.3 8.5 71 88-162 7-77 (104)
15 cd02989 Phd_like_TxnDC9 Phosdu 99.7 6.2E-18 1.3E-22 119.4 8.6 75 82-162 5-79 (113)
16 cd02956 ybbN ybbN protein fami 99.7 5.6E-18 1.2E-22 115.2 8.0 69 91-162 2-70 (96)
17 cd03065 PDI_b_Calsequestrin_N 99.7 1.5E-17 3.3E-22 118.6 7.5 71 88-162 15-91 (120)
18 cd02957 Phd_like Phosducin (Ph 99.7 1.5E-17 3.3E-22 117.0 7.1 76 82-162 5-80 (113)
19 cd02963 TRX_DnaJ TRX domain, D 99.7 2.2E-17 4.7E-22 116.0 7.3 73 88-162 10-83 (111)
20 cd02996 PDI_a_ERp44 PDIa famil 99.7 4E-17 8.8E-22 113.6 8.2 73 84-162 4-82 (108)
21 PTZ00051 thioredoxin; Provisio 99.7 6.2E-17 1.3E-21 110.3 8.5 74 83-162 2-75 (98)
22 cd03002 PDI_a_MPD1_like PDI fa 99.7 5.8E-17 1.2E-21 112.4 8.2 71 88-162 6-78 (109)
23 PF00085 Thioredoxin: Thioredo 99.7 6.7E-17 1.5E-21 110.2 8.2 71 88-162 5-75 (103)
24 cd02965 HyaE HyaE family; HyaE 99.7 5.1E-17 1.1E-21 114.2 7.0 70 88-162 16-87 (111)
25 cd02962 TMX2 TMX2 family; comp 99.7 1.6E-16 3.5E-21 117.7 10.1 77 82-162 29-112 (152)
26 KOG0908 Thioredoxin-like prote 99.7 3.2E-17 6.9E-22 128.2 5.5 77 82-162 2-78 (288)
27 cd02984 TRX_PICOT TRX domain, 99.7 1.8E-16 4E-21 107.6 8.5 72 88-162 1-72 (97)
28 cd02994 PDI_a_TMX PDIa family, 99.7 1.6E-16 3.5E-21 109.0 7.9 72 83-162 3-75 (101)
29 PRK09381 trxA thioredoxin; Pro 99.7 2.2E-16 4.7E-21 109.8 8.6 75 83-162 5-79 (109)
30 cd02987 Phd_like_Phd Phosducin 99.7 1.8E-16 3.8E-21 120.0 8.4 79 80-162 61-139 (175)
31 cd03005 PDI_a_ERp46 PDIa famil 99.7 2.2E-16 4.7E-21 108.0 7.9 69 88-162 6-77 (102)
32 cd03001 PDI_a_P5 PDIa family, 99.7 3.2E-16 6.9E-21 107.3 8.3 71 88-162 6-76 (103)
33 cd02950 TxlA TRX-like protein 99.7 2.5E-16 5.5E-21 115.3 7.4 69 89-162 10-80 (142)
34 cd02952 TRP14_like Human TRX-r 99.7 4.9E-16 1.1E-20 110.7 8.1 74 86-162 6-94 (119)
35 cd03000 PDI_a_TMX3 PDIa family 99.6 7.1E-16 1.5E-20 106.7 7.7 67 90-162 7-76 (104)
36 cd02993 PDI_a_APS_reductase PD 99.6 1.1E-15 2.5E-20 106.7 8.4 73 88-162 7-82 (109)
37 cd02953 DsbDgamma DsbD gamma f 99.6 6E-16 1.3E-20 106.9 6.9 68 90-162 2-76 (104)
38 cd02997 PDI_a_PDIR PDIa family 99.6 1E-15 2.2E-20 104.8 7.9 70 88-162 6-79 (104)
39 TIGR01126 pdi_dom protein disu 99.6 1.4E-15 2.9E-20 103.6 7.8 70 88-162 2-73 (102)
40 PTZ00443 Thioredoxin domain-co 99.6 9.9E-16 2.2E-20 120.0 7.6 78 83-162 32-110 (224)
41 TIGR01068 thioredoxin thioredo 99.6 4.1E-15 8.9E-20 100.8 8.3 70 89-162 3-72 (101)
42 cd02998 PDI_a_ERp38 PDIa famil 99.6 3.4E-15 7.3E-20 102.2 7.7 71 88-162 6-79 (105)
43 cd02949 TRX_NTR TRX domain, no 99.6 5E-15 1.1E-19 101.2 8.2 67 92-162 5-71 (97)
44 cd02992 PDI_a_QSOX PDIa family 99.6 3.7E-15 8E-20 105.2 7.7 71 88-162 7-82 (114)
45 cd02975 PfPDO_like_N Pyrococcu 99.6 3.9E-15 8.4E-20 105.0 7.4 60 101-162 20-79 (113)
46 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 4.6E-15 9.9E-20 101.5 7.6 70 88-162 6-77 (104)
47 cd02961 PDI_a_family Protein D 99.6 6.2E-15 1.4E-19 99.2 8.1 70 88-162 4-75 (101)
48 cd02959 ERp19 Endoplasmic reti 99.5 1E-14 2.2E-19 103.6 6.2 72 91-162 7-80 (117)
49 cd02951 SoxW SoxW family; SoxW 99.5 1.9E-14 4.1E-19 102.5 7.2 67 91-162 5-88 (125)
50 TIGR00424 APS_reduc 5'-adenyly 99.5 3.7E-14 8.1E-19 121.2 8.3 74 88-162 357-432 (463)
51 PLN02309 5'-adenylylsulfate re 99.5 1.2E-13 2.6E-18 118.0 8.8 73 88-162 351-426 (457)
52 cd02988 Phd_like_VIAF Phosduci 99.5 1E-13 2.2E-18 106.4 7.5 76 80-162 81-156 (192)
53 KOG0190 Protein disulfide isom 99.5 4.1E-14 8.8E-19 120.9 5.8 70 88-162 31-103 (493)
54 TIGR00411 redox_disulf_1 small 99.5 1.2E-13 2.6E-18 90.9 6.4 56 106-162 2-57 (82)
55 cd02947 TRX_family TRX family; 99.5 2E-13 4.3E-18 90.0 7.1 66 91-162 2-67 (93)
56 TIGR01295 PedC_BrcD bacterioci 99.5 3E-13 6.4E-18 96.7 7.7 69 88-162 12-94 (122)
57 TIGR01130 ER_PDI_fam protein d 99.4 2.7E-13 5.9E-18 114.7 8.4 70 88-162 7-79 (462)
58 PRK00293 dipZ thiol:disulfide 99.4 6.5E-13 1.4E-17 116.7 9.8 82 80-162 451-538 (571)
59 cd03008 TryX_like_RdCVF Trypar 99.4 4.8E-13 1E-17 98.5 7.5 46 101-146 23-76 (146)
60 PTZ00102 disulphide isomerase; 99.4 4.6E-13 1E-17 114.4 8.4 74 83-162 34-110 (477)
61 PHA02125 thioredoxin-like prot 99.4 2.7E-13 5.9E-18 88.7 5.5 49 107-162 2-50 (75)
62 cd02973 TRX_GRX_like Thioredox 99.4 3.8E-13 8.2E-18 85.7 5.8 55 106-162 2-56 (67)
63 cd02982 PDI_b'_family Protein 99.4 4.9E-13 1.1E-17 91.6 6.6 60 102-162 11-72 (103)
64 KOG0190 Protein disulfide isom 99.4 2.5E-13 5.4E-18 116.1 5.5 68 89-162 373-442 (493)
65 PTZ00102 disulphide isomerase; 99.4 6.5E-13 1.4E-17 113.5 6.6 75 83-162 359-435 (477)
66 cd02964 TryX_like_family Trypa 99.4 1.4E-12 3E-17 93.9 7.0 62 101-162 15-103 (132)
67 KOG4277 Uncharacterized conser 99.4 3.4E-13 7.3E-18 108.6 4.1 70 91-162 32-104 (468)
68 TIGR00412 redox_disulf_2 small 99.4 1.3E-12 2.8E-17 85.9 5.4 52 107-162 2-53 (76)
69 cd03009 TryX_like_TryX_NRX Try 99.3 2.6E-12 5.6E-17 92.0 7.0 62 101-162 16-103 (131)
70 cd02967 mauD Methylamine utili 99.3 1.2E-12 2.6E-17 91.2 5.0 59 102-161 20-81 (114)
71 cd03007 PDI_a_ERp29_N PDIa fam 99.3 2.1E-12 4.6E-17 91.5 5.7 66 88-162 7-84 (116)
72 PTZ00062 glutaredoxin; Provisi 99.3 3.1E-12 6.6E-17 99.0 6.6 63 87-162 4-66 (204)
73 cd02955 SSP411 TRX domain, SSP 99.3 1.1E-11 2.4E-16 88.9 7.8 63 99-162 11-84 (124)
74 PRK14018 trifunctional thiored 99.3 8.2E-12 1.8E-16 108.2 7.8 61 101-162 54-143 (521)
75 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.3E-11 2.8E-16 87.8 7.6 58 101-161 23-103 (127)
76 TIGR02738 TrbB type-F conjugat 99.3 7.9E-12 1.7E-16 92.7 6.5 58 101-161 48-121 (153)
77 TIGR02740 TraF-like TraF-like 99.3 1.3E-11 2.8E-16 99.4 8.2 59 101-162 164-233 (271)
78 TIGR02187 GlrX_arch Glutaredox 99.3 2.1E-11 4.5E-16 94.9 7.9 59 102-162 132-190 (215)
79 PF13905 Thioredoxin_8: Thiore 99.2 2.7E-11 5.9E-16 81.9 7.3 44 103-146 1-46 (95)
80 TIGR01130 ER_PDI_fam protein d 99.2 1.2E-11 2.5E-16 104.8 5.8 69 88-162 352-423 (462)
81 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 4.9E-11 1.1E-15 80.8 7.1 59 102-162 11-69 (89)
82 KOG0191 Thioredoxin/protein di 99.2 2.2E-11 4.9E-16 102.2 6.1 61 101-162 45-105 (383)
83 PF13899 Thioredoxin_7: Thiore 99.2 2.8E-11 6.1E-16 80.3 4.6 70 91-162 5-77 (82)
84 KOG0912 Thiol-disulfide isomer 99.1 6.4E-11 1.4E-15 95.4 5.9 68 90-162 4-76 (375)
85 cd02966 TlpA_like_family TlpA- 99.1 1.7E-10 3.8E-15 78.6 7.0 61 101-162 17-101 (116)
86 TIGR02187 GlrX_arch Glutaredox 99.1 1.8E-10 4E-15 89.5 7.8 59 102-162 18-81 (215)
87 PRK15412 thiol:disulfide inter 99.1 2.1E-10 4.5E-15 87.3 7.8 44 101-147 66-109 (185)
88 PF13098 Thioredoxin_2: Thiore 99.1 4.4E-11 9.5E-16 83.1 2.5 63 100-162 2-86 (112)
89 cd03012 TlpA_like_DipZ_like Tl 99.1 3.3E-10 7.2E-15 80.7 7.0 42 102-143 22-64 (126)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 2.5E-10 5.5E-15 80.4 6.2 57 101-162 18-97 (123)
91 PLN02919 haloacid dehalogenase 99.1 2E-10 4.4E-15 107.1 6.9 61 101-162 418-506 (1057)
92 TIGR00385 dsbE periplasmic pro 99.1 5.9E-10 1.3E-14 83.8 7.7 41 101-144 61-101 (173)
93 COG0526 TrxA Thiol-disulfide i 99.1 5.2E-10 1.1E-14 75.4 6.5 59 103-162 32-93 (127)
94 KOG1731 FAD-dependent sulfhydr 99.0 6.2E-11 1.4E-15 102.1 1.5 71 88-162 45-120 (606)
95 PF08534 Redoxin: Redoxin; In 99.0 7.8E-10 1.7E-14 80.3 6.8 45 102-146 27-73 (146)
96 PRK03147 thiol-disulfide oxido 99.0 1E-09 2.3E-14 81.6 7.1 60 101-161 59-141 (173)
97 PTZ00056 glutathione peroxidas 99.0 1.1E-09 2.5E-14 84.4 6.5 44 101-144 37-81 (199)
98 cd02960 AGR Anterior Gradient 99.0 1.2E-09 2.6E-14 78.8 6.2 75 86-162 6-83 (130)
99 PRK13728 conjugal transfer pro 99.0 1.4E-09 3.1E-14 82.6 6.4 53 107-161 73-139 (181)
100 cd02958 UAS UAS family; UAS is 99.0 2.2E-09 4.8E-14 75.3 6.6 73 90-162 4-80 (114)
101 cd00340 GSH_Peroxidase Glutath 98.9 2.7E-09 5.9E-14 78.5 6.7 42 102-144 21-63 (152)
102 TIGR02661 MauD methylamine deh 98.9 2.6E-09 5.6E-14 81.6 6.5 40 101-142 72-111 (189)
103 PLN02399 phospholipid hydroper 98.9 3.3E-09 7.1E-14 83.9 6.4 61 78-144 79-141 (236)
104 TIGR02540 gpx7 putative glutat 98.9 8E-09 1.7E-13 76.0 6.9 43 101-143 20-63 (153)
105 smart00594 UAS UAS domain. 98.8 1.3E-08 2.8E-13 72.5 7.4 73 90-162 14-90 (122)
106 PLN02412 probable glutathione 98.8 8.9E-09 1.9E-13 77.2 6.6 43 102-144 28-71 (167)
107 KOG0191 Thioredoxin/protein di 98.8 5.8E-09 1.2E-13 87.6 5.8 71 88-162 150-222 (383)
108 cd02969 PRX_like1 Peroxiredoxi 98.7 3.3E-08 7.2E-13 73.9 7.1 44 102-145 24-68 (171)
109 PTZ00256 glutathione peroxidas 98.7 2.3E-08 5E-13 75.9 6.1 43 102-144 39-83 (183)
110 COG4232 Thiol:disulfide interc 98.7 4E-08 8.6E-13 85.5 7.7 76 84-162 457-538 (569)
111 cd03014 PRX_Atyp2cys Peroxired 98.7 3.3E-08 7.2E-13 71.5 6.3 58 102-160 25-85 (143)
112 PRK00522 tpx lipid hydroperoxi 98.7 4E-08 8.7E-13 73.6 6.5 58 102-160 43-103 (167)
113 TIGR01626 ytfJ_HI0045 conserve 98.7 2.4E-08 5.3E-13 76.1 5.1 43 101-146 57-105 (184)
114 cd01659 TRX_superfamily Thiore 98.7 7.1E-08 1.5E-12 57.9 5.4 54 107-162 1-57 (69)
115 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 1.8E-07 3.8E-12 65.6 7.1 45 102-146 24-70 (124)
116 TIGR02196 GlrX_YruB Glutaredox 98.6 1E-07 2.3E-12 60.4 5.4 50 107-162 2-54 (74)
117 cd02970 PRX_like2 Peroxiredoxi 98.6 1.8E-07 4E-12 67.5 7.2 47 102-148 23-70 (149)
118 TIGR02200 GlrX_actino Glutared 98.6 9.4E-08 2E-12 61.6 4.9 49 107-162 2-55 (77)
119 KOG0914 Thioredoxin-like prote 98.6 8.6E-08 1.9E-12 74.3 4.9 76 83-161 126-202 (265)
120 PF06110 DUF953: Eukaryotic pr 98.5 3.9E-07 8.4E-12 64.9 7.0 76 87-162 3-93 (119)
121 TIGR02180 GRX_euk Glutaredoxin 98.5 1.7E-07 3.7E-12 61.5 4.7 54 107-162 1-58 (84)
122 cd02968 SCO SCO (an acronym fo 98.5 3.2E-07 6.9E-12 65.9 6.1 44 102-145 21-69 (142)
123 PRK10606 btuE putative glutath 98.5 2.3E-07 5.1E-12 70.7 5.5 43 101-144 23-66 (183)
124 KOG2501 Thioredoxin, nucleored 98.5 2.3E-07 5E-12 68.7 5.3 46 101-146 31-79 (157)
125 KOG1672 ATP binding protein [P 98.5 2.5E-07 5.3E-12 70.5 5.1 78 79-162 64-141 (211)
126 cd03018 PRX_AhpE_like Peroxire 98.4 7.3E-07 1.6E-11 64.6 5.9 43 104-146 29-73 (149)
127 TIGR03137 AhpC peroxiredoxin. 98.4 8.4E-07 1.8E-11 67.6 5.9 46 101-146 29-76 (187)
128 KOG3425 Uncharacterized conser 98.3 2.2E-06 4.7E-11 60.6 6.7 74 87-162 10-99 (128)
129 cd03015 PRX_Typ2cys Peroxiredo 98.3 1.2E-06 2.7E-11 65.6 5.6 45 102-146 28-74 (173)
130 cd03017 PRX_BCP Peroxiredoxin 98.3 1.6E-06 3.4E-11 62.2 5.8 45 102-146 22-68 (140)
131 PF03190 Thioredox_DsbH: Prote 98.3 1.1E-06 2.4E-11 65.7 4.9 67 94-161 28-105 (163)
132 PF13728 TraF: F plasmid trans 98.3 3.7E-06 8E-11 65.7 8.0 59 101-162 118-187 (215)
133 cd02971 PRX_family Peroxiredox 98.3 2E-06 4.4E-11 61.5 5.9 45 102-146 21-67 (140)
134 PRK09437 bcp thioredoxin-depen 98.2 3E-06 6.5E-11 62.1 5.2 45 102-146 29-75 (154)
135 PRK11200 grxA glutaredoxin 1; 98.2 3.9E-06 8.5E-11 55.7 5.2 56 106-162 2-62 (85)
136 PRK11509 hydrogenase-1 operon 98.1 1.2E-05 2.6E-10 58.2 7.0 68 90-162 25-95 (132)
137 PRK13599 putative peroxiredoxi 98.1 6.7E-06 1.5E-10 64.2 6.0 46 102-147 27-74 (215)
138 KOG0911 Glutaredoxin-related p 98.1 2.1E-06 4.5E-11 66.8 2.5 71 83-161 3-73 (227)
139 KOG0913 Thiol-disulfide isomer 98.1 2.7E-07 5.9E-12 72.1 -2.6 68 88-162 30-98 (248)
140 cd02976 NrdH NrdH-redoxin (Nrd 98.1 1.1E-05 2.3E-10 50.9 5.2 49 107-162 2-54 (73)
141 PRK13190 putative peroxiredoxi 98.0 1.1E-05 2.4E-10 62.3 5.8 45 102-146 26-72 (202)
142 PRK10382 alkyl hydroperoxide r 98.0 1.1E-05 2.3E-10 61.8 5.7 46 101-146 29-76 (187)
143 PF02114 Phosducin: Phosducin; 98.0 5.3E-06 1.1E-10 66.7 3.9 79 80-162 124-202 (265)
144 cd03016 PRX_1cys Peroxiredoxin 98.0 1.3E-05 2.9E-10 61.8 5.7 42 105-146 28-70 (203)
145 PF14595 Thioredoxin_9: Thiore 98.0 6.5E-06 1.4E-10 59.4 3.7 60 101-162 39-101 (129)
146 PRK13191 putative peroxiredoxi 98.0 2E-05 4.4E-10 61.5 6.1 46 102-147 32-79 (215)
147 TIGR02739 TraF type-F conjugat 98.0 3.6E-05 7.8E-10 61.6 7.6 59 101-162 148-217 (256)
148 PRK15000 peroxidase; Provision 98.0 1.8E-05 3.9E-10 61.1 5.7 45 102-146 33-79 (200)
149 PRK13189 peroxiredoxin; Provis 97.9 2.1E-05 4.6E-10 61.6 5.9 46 102-147 34-81 (222)
150 cd02991 UAS_ETEA UAS family, E 97.9 3.6E-05 7.9E-10 54.5 6.4 71 91-162 5-80 (116)
151 cd03419 GRX_GRXh_1_2_like Glut 97.9 1.9E-05 4.1E-10 51.5 4.2 52 107-162 2-57 (82)
152 PF13192 Thioredoxin_3: Thiore 97.9 4.1E-05 8.8E-10 49.9 5.4 50 109-162 4-53 (76)
153 PTZ00137 2-Cys peroxiredoxin; 97.8 4.9E-05 1.1E-09 61.1 5.7 45 102-146 97-143 (261)
154 TIGR02183 GRXA Glutaredoxin, G 97.8 4.3E-05 9.2E-10 51.0 4.5 55 107-162 2-61 (86)
155 PF11009 DUF2847: Protein of u 97.7 0.00024 5.2E-09 49.4 7.9 74 83-158 1-77 (105)
156 PRK13703 conjugal pilus assemb 97.7 0.00016 3.5E-09 57.7 7.4 58 102-162 142-210 (248)
157 KOG3414 Component of the U4/U6 97.7 0.0002 4.3E-09 51.2 6.9 75 85-162 7-81 (142)
158 cd02066 GRX_family Glutaredoxi 97.7 0.0001 2.2E-09 46.0 4.8 50 107-162 2-54 (72)
159 PF00462 Glutaredoxin: Glutare 97.6 0.00013 2.9E-09 45.0 4.6 50 107-162 1-53 (60)
160 PF02966 DIM1: Mitosis protein 97.6 0.00084 1.8E-08 48.4 8.8 73 84-160 3-75 (133)
161 PTZ00253 tryparedoxin peroxida 97.6 0.00017 3.8E-09 55.3 5.6 46 102-147 35-82 (199)
162 TIGR03143 AhpF_homolog putativ 97.5 0.00038 8.2E-09 61.3 7.7 59 102-162 474-533 (555)
163 PRK15317 alkyl hydroperoxide r 97.5 0.00043 9.4E-09 60.4 7.5 58 103-162 116-173 (517)
164 TIGR02190 GlrX-dom Glutaredoxi 97.4 0.00014 3.1E-09 47.6 3.0 54 103-162 6-61 (79)
165 cd03023 DsbA_Com1_like DsbA fa 97.4 0.00043 9.3E-09 49.7 5.6 42 101-143 3-44 (154)
166 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00044 9.6E-09 44.3 4.8 48 108-162 2-52 (72)
167 PHA03050 glutaredoxin; Provisi 97.3 0.00054 1.2E-08 47.9 5.4 55 107-162 15-73 (108)
168 cd02972 DsbA_family DsbA famil 97.3 0.00069 1.5E-08 44.4 5.2 37 107-143 1-37 (98)
169 TIGR02181 GRX_bact Glutaredoxi 97.3 0.00048 1E-08 44.7 4.4 50 107-162 1-53 (79)
170 cd03418 GRX_GRXb_1_3_like Glut 97.1 0.0015 3.3E-08 41.7 5.4 50 107-162 2-55 (75)
171 PRK10329 glutaredoxin-like pro 97.1 0.0018 4E-08 42.7 5.6 50 107-162 3-54 (81)
172 TIGR03140 AhpF alkyl hydropero 96.9 0.0031 6.8E-08 55.0 7.4 58 103-162 117-174 (515)
173 PF13848 Thioredoxin_6: Thiore 96.9 0.0051 1.1E-07 45.6 7.3 74 83-162 79-155 (184)
174 TIGR02189 GlrX-like_plant Glut 96.9 0.0013 2.9E-08 45.0 3.5 50 107-162 10-65 (99)
175 cd03027 GRX_DEP Glutaredoxin ( 96.8 0.0048 1E-07 39.4 5.5 50 107-162 3-55 (73)
176 cd03029 GRX_hybridPRX5 Glutare 96.7 0.0017 3.8E-08 41.4 3.1 50 107-162 3-54 (72)
177 cd03013 PRX5_like Peroxiredoxi 96.7 0.0072 1.6E-07 44.6 6.8 58 103-160 30-93 (155)
178 COG2143 Thioredoxin-related pr 96.7 0.0077 1.7E-07 44.9 6.6 62 101-162 40-119 (182)
179 cd03020 DsbA_DsbC_DsbG DsbA fa 96.7 0.0034 7.3E-08 47.9 4.8 27 101-127 75-101 (197)
180 TIGR00365 monothiol glutaredox 96.6 0.011 2.4E-07 40.3 6.6 61 91-162 4-71 (97)
181 cd03019 DsbA_DsbA DsbA family, 96.5 0.0046 1E-07 45.7 4.7 42 102-143 14-55 (178)
182 PF13462 Thioredoxin_4: Thiore 96.5 0.01 2.2E-07 43.1 6.4 47 101-147 10-58 (162)
183 cd03028 GRX_PICOT_like Glutare 96.5 0.0063 1.4E-07 40.8 4.8 54 103-162 7-67 (90)
184 PF05768 DUF836: Glutaredoxin- 96.5 0.0047 1E-07 40.6 3.9 51 107-161 2-52 (81)
185 COG0695 GrxC Glutaredoxin and 96.4 0.0081 1.8E-07 39.6 4.6 50 107-162 3-57 (80)
186 PRK10877 protein disulfide iso 96.3 0.01 2.2E-07 46.8 5.5 30 101-130 105-134 (232)
187 cd02981 PDI_b_family Protein D 96.2 0.046 9.9E-07 36.4 7.6 64 84-158 2-65 (97)
188 COG1225 Bcp Peroxiredoxin [Pos 96.0 0.025 5.4E-07 42.1 6.3 57 101-157 28-88 (157)
189 KOG1752 Glutaredoxin and relat 95.9 0.029 6.4E-07 38.9 5.9 61 91-161 6-70 (104)
190 PRK10954 periplasmic protein d 95.9 0.013 2.8E-07 45.2 4.3 42 103-144 37-81 (207)
191 PRK10824 glutaredoxin-4; Provi 95.8 0.037 7.9E-07 39.1 6.1 62 90-162 6-74 (115)
192 PRK10638 glutaredoxin 3; Provi 95.8 0.0079 1.7E-07 39.5 2.5 50 107-162 4-56 (83)
193 TIGR03143 AhpF_homolog putativ 95.8 0.04 8.7E-07 48.6 7.5 70 89-162 354-423 (555)
194 cd03072 PDI_b'_ERp44 PDIb' fam 95.6 0.05 1.1E-06 37.9 6.1 66 90-162 7-77 (111)
195 PRK11657 dsbG disulfide isomer 95.6 0.028 6.2E-07 44.8 5.3 39 101-141 115-153 (251)
196 PTZ00062 glutaredoxin; Provisi 95.4 0.061 1.3E-06 41.7 6.6 61 91-162 105-172 (204)
197 PF00837 T4_deiodinase: Iodoth 95.1 0.035 7.6E-07 43.9 4.2 64 77-144 78-143 (237)
198 COG1331 Highly conserved prote 95.0 0.041 9E-07 49.4 5.0 62 88-154 32-96 (667)
199 cd02978 KaiB_like KaiB-like fa 94.8 0.18 4E-06 32.6 6.3 55 107-162 4-59 (72)
200 cd02983 P5_C P5 family, C-term 94.6 0.37 8E-06 34.5 8.4 76 82-162 3-85 (130)
201 KOG2603 Oligosaccharyltransfer 94.5 0.076 1.6E-06 43.6 4.9 77 83-162 42-130 (331)
202 KOG3170 Conserved phosducin-li 94.5 0.14 3E-06 39.8 6.0 64 79-145 89-152 (240)
203 TIGR02654 circ_KaiB circadian 94.2 0.27 5.9E-06 33.0 6.3 58 104-162 3-61 (87)
204 PRK09301 circadian clock prote 94.0 0.28 6.1E-06 34.0 6.3 60 102-162 4-64 (103)
205 cd03073 PDI_b'_ERp72_ERp57 PDI 93.9 0.16 3.5E-06 35.4 5.2 46 116-162 31-81 (111)
206 cd03060 GST_N_Omega_like GST_N 93.7 0.093 2E-06 33.0 3.4 51 108-162 2-52 (71)
207 KOG3171 Conserved phosducin-li 93.0 0.32 7E-06 38.2 5.9 81 78-162 135-215 (273)
208 PHA03075 glutaredoxin-like pro 93.0 0.14 3E-06 36.2 3.5 36 104-143 2-37 (123)
209 PRK12759 bifunctional gluaredo 92.6 0.11 2.3E-06 44.4 3.0 21 107-127 4-24 (410)
210 PF01216 Calsequestrin: Calseq 92.5 0.46 9.9E-06 39.8 6.4 69 88-162 40-116 (383)
211 PF07449 HyaE: Hydrogenase-1 e 91.6 0.16 3.5E-06 35.4 2.4 73 83-162 11-86 (107)
212 cd03067 PDI_b_PDIR_N PDIb fami 90.7 2.1 4.7E-05 29.7 7.2 69 84-157 4-73 (112)
213 PF13743 Thioredoxin_5: Thiore 90.6 0.45 9.8E-06 35.8 4.3 33 109-141 2-34 (176)
214 PF02630 SCO1-SenC: SCO1/SenC; 89.8 1.6 3.4E-05 32.7 6.7 46 101-146 50-99 (174)
215 cd02977 ArsC_family Arsenate R 89.5 0.36 7.9E-06 32.9 2.7 32 108-145 2-33 (105)
216 cd03035 ArsC_Yffb Arsenate Red 89.5 0.45 9.7E-06 32.8 3.2 33 108-146 2-34 (105)
217 PF07689 KaiB: KaiB domain; I 89.3 0.29 6.2E-06 32.5 1.9 50 112-162 5-55 (82)
218 PF07912 ERp29_N: ERp29, N-ter 89.1 2.9 6.2E-05 30.0 7.0 68 88-162 10-87 (126)
219 cd03059 GST_N_SspA GST_N famil 88.4 0.56 1.2E-05 29.2 2.9 50 108-161 2-51 (73)
220 KOG2640 Thioredoxin [Function 88.1 0.096 2.1E-06 43.0 -1.1 68 91-162 66-134 (319)
221 cd03031 GRX_GRX_like Glutaredo 87.5 1.6 3.4E-05 32.1 5.1 50 107-162 2-64 (147)
222 PRK01655 spxA transcriptional 87.5 1.1 2.3E-05 32.1 4.2 35 107-147 2-36 (131)
223 cd03036 ArsC_like Arsenate Red 87.1 0.78 1.7E-05 31.8 3.2 33 108-146 2-34 (111)
224 cd03051 GST_N_GTT2_like GST_N 86.5 0.93 2E-05 28.0 3.1 50 108-162 2-55 (74)
225 TIGR01617 arsC_related transcr 86.5 1.5 3.3E-05 30.5 4.4 34 108-147 2-35 (117)
226 cd00570 GST_N_family Glutathio 83.5 1.2 2.5E-05 26.6 2.4 50 109-162 3-53 (71)
227 PRK12559 transcriptional regul 82.5 2.1 4.5E-05 30.7 3.7 34 107-146 2-35 (131)
228 cd03025 DsbA_FrnE_like DsbA fa 82.4 2.1 4.5E-05 31.8 3.9 30 107-136 3-32 (193)
229 cd03045 GST_N_Delta_Epsilon GS 82.3 1.7 3.6E-05 27.0 2.9 49 108-161 2-54 (74)
230 cd03040 GST_N_mPGES2 GST_N fam 81.3 1.3 2.8E-05 28.0 2.1 20 107-126 2-21 (77)
231 cd03032 ArsC_Spx Arsenate Redu 81.1 2.9 6.2E-05 29.0 4.0 34 107-146 2-35 (115)
232 cd03037 GST_N_GRX2 GST_N famil 80.6 1.4 3E-05 27.4 2.0 48 109-161 3-50 (71)
233 cd03055 GST_N_Omega GST_N fami 80.5 2.7 5.8E-05 27.6 3.5 52 107-162 19-70 (89)
234 PF04592 SelP_N: Selenoprotein 79.7 4 8.7E-05 32.4 4.7 46 101-146 24-73 (238)
235 COG3019 Predicted metal-bindin 78.2 5.7 0.00012 29.1 4.7 45 106-157 27-71 (149)
236 PRK13344 spxA transcriptional 78.0 3.8 8.1E-05 29.4 3.8 34 107-146 2-35 (132)
237 COG1651 DsbG Protein-disulfide 76.7 4.5 9.8E-05 31.4 4.3 39 103-142 84-122 (244)
238 COG0450 AhpC Peroxiredoxin [Po 76.5 8.3 0.00018 29.7 5.5 45 102-146 32-78 (194)
239 cd03069 PDI_b_ERp57 PDIb famil 76.3 18 0.00038 24.5 6.7 63 83-156 2-64 (104)
240 COG1999 Uncharacterized protei 75.4 13 0.00028 28.7 6.5 55 101-156 65-127 (207)
241 cd03041 GST_N_2GST_N GST_N fam 73.9 2.5 5.4E-05 26.9 1.8 19 108-126 3-21 (77)
242 PF13417 GST_N_3: Glutathione 73.1 5.2 0.00011 25.2 3.2 49 110-162 2-50 (75)
243 PF01323 DSBA: DSBA-like thior 72.7 8.6 0.00019 28.3 4.8 38 106-143 1-39 (193)
244 cd03066 PDI_b_Calsequestrin_mi 71.8 27 0.00058 23.4 7.5 64 83-157 2-66 (102)
245 PF09673 TrbC_Ftype: Type-F co 71.6 12 0.00026 26.0 5.0 65 90-162 11-75 (113)
246 PF00255 GSHPx: Glutathione pe 70.9 21 0.00046 24.8 6.0 44 101-145 19-63 (108)
247 cd03068 PDI_b_ERp72 PDIb famil 70.0 32 0.00069 23.5 7.2 65 83-158 2-67 (107)
248 PF04134 DUF393: Protein of un 67.1 7.6 0.00016 26.5 3.2 45 110-157 2-46 (114)
249 PF13905 Thioredoxin_8: Thiore 66.2 16 0.00034 23.6 4.5 54 102-162 33-86 (95)
250 PF06053 DUF929: Domain of unk 65.1 16 0.00035 29.3 5.0 35 101-136 56-90 (249)
251 COG4545 Glutaredoxin-related p 63.6 3.2 6.9E-05 27.2 0.6 25 108-132 5-29 (85)
252 cd03056 GST_N_4 GST_N family, 59.1 13 0.00028 22.6 2.9 49 109-161 3-54 (73)
253 cd02990 UAS_FAF1 UAS family, F 52.2 88 0.0019 22.6 7.4 71 91-162 5-100 (136)
254 cd03033 ArsC_15kD Arsenate Red 50.5 18 0.00039 25.2 2.7 33 107-145 2-34 (113)
255 KOG0854 Alkyl hydroperoxide re 50.3 29 0.00063 26.7 3.9 54 88-147 22-78 (224)
256 TIGR02742 TrbC_Ftype type-F co 48.0 46 0.00099 23.9 4.6 64 90-162 12-75 (130)
257 cd03052 GST_N_GDAP1 GST_N fami 47.5 25 0.00055 22.0 2.9 50 108-161 2-54 (73)
258 COG0386 BtuE Glutathione perox 44.0 61 0.0013 24.2 4.7 43 101-144 23-66 (162)
259 cd03049 GST_N_3 GST_N family, 42.7 27 0.00058 21.4 2.4 51 109-161 3-53 (73)
260 cd03034 ArsC_ArsC Arsenate Red 42.4 34 0.00074 23.5 3.2 32 108-145 2-33 (112)
261 cd03053 GST_N_Phi GST_N family 42.0 38 0.00083 20.8 3.1 51 107-161 2-55 (76)
262 PRK09481 sspA stringent starva 39.5 39 0.00085 25.5 3.4 56 102-161 6-61 (211)
263 TIGR00014 arsC arsenate reduct 38.9 42 0.0009 23.2 3.1 33 108-146 2-34 (114)
264 cd03058 GST_N_Tau GST_N family 38.6 44 0.00095 20.5 3.0 49 109-161 3-52 (74)
265 cd03061 GST_N_CLIC GST_N famil 37.7 35 0.00075 22.9 2.5 46 112-161 19-64 (91)
266 COG1393 ArsC Arsenate reductas 36.8 37 0.00081 23.8 2.6 20 107-126 3-22 (117)
267 PF09822 ABC_transp_aux: ABC-t 36.6 2.1E+02 0.0046 22.5 7.7 58 102-160 23-90 (271)
268 TIGR02743 TraW type-F conjugat 34.9 40 0.00087 26.1 2.7 32 125-162 158-189 (202)
269 PF00403 HMA: Heavy-metal-asso 31.5 1E+02 0.0022 18.2 3.7 30 112-145 6-35 (62)
270 COG3531 Predicted protein-disu 31.5 59 0.0013 25.3 3.1 27 106-132 3-29 (212)
271 KOG2501 Thioredoxin, nucleored 31.3 1.6E+02 0.0034 22.0 5.3 64 90-162 56-119 (157)
272 KOG1651 Glutathione peroxidase 31.2 1.1E+02 0.0024 23.1 4.4 44 101-144 32-76 (171)
273 COG2761 FrnE Predicted dithiol 31.0 96 0.0021 24.5 4.3 33 104-136 4-37 (225)
274 PRK13738 conjugal transfer pil 30.9 56 0.0012 25.5 3.0 31 126-162 157-187 (209)
275 PRK10853 putative reductase; P 30.4 67 0.0015 22.4 3.1 33 107-145 2-34 (118)
276 KOG2792 Putative cytochrome C 28.1 1.3E+02 0.0029 24.4 4.7 45 102-146 138-189 (280)
277 PF10589 NADH_4Fe-4S: NADH-ubi 27.5 40 0.00086 19.5 1.3 20 113-132 17-36 (46)
278 KOG2244 Highly conserved prote 27.2 46 0.001 30.0 2.1 54 95-148 104-160 (786)
279 PRK13602 putative ribosomal pr 26.5 1.9E+02 0.0041 18.8 6.1 58 88-157 15-72 (82)
280 KOG0855 Alkyl hydroperoxide re 25.9 1.7E+02 0.0036 22.4 4.6 46 101-146 88-135 (211)
281 PF09654 DUF2396: Protein of u 25.0 27 0.00059 25.6 0.3 13 114-126 8-20 (161)
282 cd03074 PDI_b'_Calsequestrin_C 24.9 2.5E+02 0.0055 19.8 5.2 46 103-148 20-67 (120)
283 PRK13730 conjugal transfer pil 24.8 2.5E+02 0.0054 22.0 5.5 65 89-162 102-166 (212)
284 COG3581 Uncharacterized protei 24.6 2.3E+02 0.0049 24.5 5.7 38 106-144 73-113 (420)
285 TIGR02652 conserved hypothetic 24.6 29 0.00062 25.5 0.3 13 114-126 11-23 (163)
286 cd02974 AhpF_NTD_N Alkyl hydro 24.5 2.2E+02 0.0048 19.0 6.7 49 90-142 8-56 (94)
287 PF14421 LmjF365940-deam: A di 24.1 88 0.0019 24.0 2.9 29 114-146 156-184 (193)
288 TIGR01616 nitro_assoc nitrogen 24.0 94 0.002 22.0 2.9 21 106-126 2-22 (126)
289 COG5270 PUA domain (predicted 23.6 32 0.0007 26.4 0.4 36 102-139 4-39 (202)
290 COG3011 Predicted thiol-disulf 23.5 1.8E+02 0.0038 21.2 4.3 53 101-156 4-56 (137)
291 KOG0324 Uncharacterized conser 23.5 72 0.0016 25.0 2.4 51 110-161 80-131 (214)
292 PF03960 ArsC: ArsC family; I 23.5 1.1E+02 0.0024 20.6 3.1 31 110-146 1-31 (110)
293 cd00862 ProRS_anticodon_zinc P 23.0 91 0.002 23.8 2.9 27 83-117 128-154 (202)
294 cd03022 DsbA_HCCA_Iso DsbA fam 22.9 1.6E+02 0.0034 21.4 4.1 31 109-139 3-33 (192)
295 PRK10026 arsenate reductase; P 22.6 93 0.002 22.6 2.7 20 107-126 4-23 (141)
296 PF07700 HNOB: Heme NO binding 22.5 2.2E+02 0.0049 20.8 4.9 43 102-144 126-169 (171)
297 PF08257 Sulfakinin: Sulfakini 21.7 35 0.00076 13.0 0.2 6 2-7 4-9 (9)
298 KOG0852 Alkyl hydroperoxide re 21.4 2.5E+02 0.0055 21.5 4.8 44 101-144 31-76 (196)
299 cd03044 GST_N_EF1Bgamma GST_N 20.6 1.5E+02 0.0032 18.2 3.1 48 109-161 3-53 (75)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.1e-21 Score=143.26 Aligned_cols=77 Identities=29% Similarity=0.593 Sum_probs=70.7
Q ss_pred CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
....+.+..+|++.+. +++.||||+|||+|||||+.+.|.++++.++|+++++|++||.|++++ ++.+|+|+.+||
T Consensus 43 ~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPt 118 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPT 118 (150)
T ss_pred ccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeE
Confidence 3444557889998883 899999999999999999999999999999999999999999999999 999999999998
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 119 v 119 (150)
T KOG0910|consen 119 V 119 (150)
T ss_pred E
Confidence 5
No 2
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.84 E-value=1.2e-20 Score=133.28 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.++|++.+.. +.++++||+|||+|||||+.+.|.|+++++++.+.+.|++||+|++++ ++++|+|+++||+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf 72 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTV 72 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEE
Confidence 4678888843 478999999999999999999999999999996678999999999999 9999999999985
No 3
>PHA02278 thioredoxin-like protein
Probab=99.81 E-value=1.2e-19 Score=126.36 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC----hHHHHHHcCCcccccC
Q 031285 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMVSLMI 162 (162)
Q Consensus 87 ~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~la~~~~I~~~Pti 162 (162)
.+.++|++.+ ++++++||+|||+|||||+.+.|.++++++++..++.|++||+|.+ ++ ++++|+|+++||+
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~-l~~~~~I~~iPT~ 76 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK-AVKLFDIMSTPVL 76 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH-HHHHCCCccccEE
Confidence 3568899999 7899999999999999999999999999998756688999999986 46 9999999999985
No 4
>PRK10996 thioredoxin 2; Provisional
Probab=99.80 E-value=3.4e-19 Score=130.09 Aligned_cols=103 Identities=26% Similarity=0.381 Sum_probs=85.1
Q ss_pred hhhhhcccccccccCCCCCCCCC--C----CCcCceecC-CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHH
Q 031285 55 VIRVTKHEGSIKELNEDDDDDHA--P----VSIPLTPIG-SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEK 127 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~-~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~ 127 (162)
|+++|++|...+++|...-...+ + ..+....+. +..+|++.+ +.+++++|+||++||++|+.+.|.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~ 76 (139)
T PRK10996 1 MNTVCTSCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFED 76 (139)
T ss_pred CeEECCCCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHH
Confidence 45789999999888877543332 2 333333333 677899888 779999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 128 LAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 128 l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+++++.+++.|+++|++.+++ ++++|+|.++|++
T Consensus 77 l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptl 110 (139)
T PRK10996 77 VAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTI 110 (139)
T ss_pred HHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEE
Confidence 999997789999999999998 9999999999985
No 5
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.80 E-value=3.3e-19 Score=123.60 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I~~~Pti 162 (162)
+.++|++.+.. +.++++||+|||+||++|+.++|.|+++++++ +++.|++||++++. + ++++|+|.++||+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~-l~~~~~V~~~Pt~ 75 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTME-LCRREKIIEVPHF 75 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHH-HHHHcCCCcCCEE
Confidence 56789999854 56999999999999999999999999999999 78999999999885 5 9999999999985
No 6
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=125.80 Aligned_cols=70 Identities=31% Similarity=0.606 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+++.....+...+++++|+|||+|||||+.+.|.+++|+++| +++.|++||+|+..+ ++++++|..+||+
T Consensus 9 ~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y-~~v~Flkvdvde~~~-~~~~~~V~~~PTf 78 (106)
T KOG0907|consen 9 DLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY-PDVVFLKVDVDELEE-VAKEFNVKAMPTF 78 (106)
T ss_pred hHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC-CCCEEEEEecccCHh-HHHhcCceEeeEE
Confidence 344333333355799999999999999999999999999999 459999999999766 9999999999985
No 7
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.79 E-value=5.3e-19 Score=129.25 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=68.9
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
+..+.+.++|++.+.. +.+++|||+|||+|||||+.+.|.|+++++++++.+.|++||+|++++ +++.|+|++.|+
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~t 80 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPCT 80 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCCc
Confidence 4567789999999964 578999999999999999999999999999996669999999999999 999999997765
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.78 E-value=5.9e-19 Score=124.72 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHH-HHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV-ARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la-~~~~I~~~Pti 162 (162)
+.++|++.+.- .+.+++++|+|||+||++|+.++|.++++++++++.+.|++||++.+.+ ++ ++|+|+++|||
T Consensus 15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PTl 88 (113)
T cd03006 15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPVI 88 (113)
T ss_pred chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCEE
Confidence 44678776321 1789999999999999999999999999999997779999999999988 88 58999999986
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.78 E-value=8.6e-19 Score=120.56 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+ ..+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++++ ++++++|+++||+
T Consensus 7 ~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 76 (101)
T cd03003 7 DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSL 76 (101)
T ss_pred CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEE
Confidence 567899988 677999999999999999999999999999997789999999999988 9999999999985
No 10
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.9e-19 Score=140.53 Aligned_cols=77 Identities=29% Similarity=0.619 Sum_probs=69.6
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++++ +..+|.+.+... +..+||||+||+|||++|+.+.|.+++++.+|++++++++||+|.+++ ++.+|||+++|++
T Consensus 25 I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV 101 (304)
T ss_pred ceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence 5566 456888777664 777899999999999999999999999999999999999999999999 9999999999985
No 11
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.77 E-value=2e-18 Score=119.44 Aligned_cols=72 Identities=11% Similarity=0.278 Sum_probs=65.3
Q ss_pred ecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 85 ~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+.+.++|++.+ +++++++|+|||+||++|+.+.|.|+++++++++ .+.|+++|+| +++ ++++|+|+++||+
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~-~~~~~~v~~~Pt~ 75 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID-TLKRYRGKCEPTF 75 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH-HHHHcCCCcCcEE
Confidence 467889999998 7899999999999999999999999999999964 4899999999 667 8999999999985
No 12
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.77 E-value=2.4e-18 Score=121.02 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.++|++.+.. ..+++|||+|||+||+||+.+.|.|++++++|.+.+.|++||+|+.++ +++.|+|..+||.
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtf 72 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEE
Confidence 3578888865 479999999999999999999999999999994349999999999999 9999999999983
No 13
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.76 E-value=2.1e-18 Score=119.22 Aligned_cols=69 Identities=22% Similarity=0.454 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~I~~~Pti 162 (162)
+.+.+++.. .+|++++|+|||+||++|+.++|.|+++++++ +++.+++||.+ ..++ ++++|+|+++||+
T Consensus 7 ~~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~~-l~~~~~V~~~PT~ 76 (100)
T cd02999 7 NIALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKPS-LLSRYGVVGFPTI 76 (100)
T ss_pred hHHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCHH-HHHhcCCeecCEE
Confidence 456666654 78999999999999999999999999999999 56899999999 7777 9999999999985
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=2.9e-18 Score=118.29 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++.+ ++++|+|+++||+
T Consensus 7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~ 77 (104)
T cd03004 7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTI 77 (104)
T ss_pred CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEE
Confidence 5678998873 567899999999999999999999999999997789999999999988 9999999999985
No 15
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.75 E-value=6.2e-18 Score=119.35 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=70.0
Q ss_pred CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
.+..+++.++|.+.+ .++++++|+||++||++|+.+.|.++++++++ ++++|++||++++++ ++++|+|..+||
T Consensus 5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt 78 (113)
T cd02989 5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT 78 (113)
T ss_pred CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence 577888889999999 67899999999999999999999999999998 679999999999999 999999999998
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 79 ~ 79 (113)
T cd02989 79 V 79 (113)
T ss_pred E
Confidence 5
No 16
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.75 E-value=5.6e-18 Score=115.16 Aligned_cols=69 Identities=25% Similarity=0.413 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+|++.+.. +.+++++|+|||+||++|+.+.|.++++++.+.+.+.+++||++.+.+ ++++|+|.++|++
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~ 70 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTV 70 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEE
Confidence 57777743 458899999999999999999999999999997779999999999998 9999999999985
No 17
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.72 E-value=1.5e-17 Score=118.63 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChh--hh--hhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRK--CI--YLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
+.++|++.+. ++..++|++||++||+| |+ .+.|.+++++.++ ++++.|++||++++++ +|++|||+++||
T Consensus 15 t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~I~~iPT 90 (120)
T cd03065 15 NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLGLDEEDS 90 (120)
T ss_pred ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcCCccccE
Confidence 4589999883 67889999999999988 99 8899999999998 7889999999999999 999999999999
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 91 l 91 (120)
T cd03065 91 I 91 (120)
T ss_pred E
Confidence 6
No 18
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.72 E-value=1.5e-17 Score=117.02 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=65.7
Q ss_pred CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
.+.++++ ++|.+.+... +.+++++|+||++||++|+.+.|.+++++++| +++.|++||++++ + ++++|+|.++||
T Consensus 5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~-~-l~~~~~i~~~Pt 79 (113)
T cd02957 5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA-F-LVNYLDIKVLPT 79 (113)
T ss_pred eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh-H-HHHhcCCCcCCE
Confidence 3566766 8899888431 22489999999999999999999999999999 6799999999998 7 999999999998
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 80 ~ 80 (113)
T cd02957 80 L 80 (113)
T ss_pred E
Confidence 5
No 19
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.71 E-value=2.2e-17 Score=115.96 Aligned_cols=73 Identities=19% Similarity=0.421 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..+|.+.+.. .+.+++++|+|||+||++|+.+.|.++++++++++ ++.+++||++.+++ ++++++|+++||+
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~ 83 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAI 83 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEE
Confidence 55677765432 14789999999999999999999999999999954 59999999999988 9999999999985
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.71 E-value=4e-17 Score=113.56 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=64.3
Q ss_pred eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC------CCeEEEEEECCCChHHHHHHcCCc
Q 031285 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGVM 157 (162)
Q Consensus 84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~la~~~~I~ 157 (162)
.++ +.++|++.+ ..+++++|+|||+||++|+.+.|.|++++++++ +.+.+++||++.+.+ ++++|+|+
T Consensus 4 ~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v~ 77 (108)
T cd02996 4 VSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRIN 77 (108)
T ss_pred EEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCCC
Confidence 344 567899988 678999999999999999999999999998762 248999999999988 99999999
Q ss_pred ccccC
Q 031285 158 VSLMI 162 (162)
Q Consensus 158 ~~Pti 162 (162)
++||+
T Consensus 78 ~~Ptl 82 (108)
T cd02996 78 KYPTL 82 (108)
T ss_pred cCCEE
Confidence 99985
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.71 E-value=6.2e-17 Score=110.29 Aligned_cols=74 Identities=22% Similarity=0.534 Sum_probs=68.2
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++.+.+.++|.+.+ +.+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++++.+ ++++|+|.++|++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence 45677888999988 78999999999999999999999999999998 679999999999988 9999999999985
No 22
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.70 E-value=5.8e-17 Score=112.35 Aligned_cols=71 Identities=24% Similarity=0.471 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+. +.+++++|+|||+||++|+.+.|.++++++++.+.+.|+.+|++. +.+ ++++|+|+++|++
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~Pt~ 78 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP-LCGKYGVQGFPTL 78 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH-HHHHcCCCcCCEE
Confidence 4568888884 568889999999999999999999999999997779999999998 777 9999999999985
No 23
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.70 E-value=6.7e-17 Score=110.18 Aligned_cols=71 Identities=32% Similarity=0.664 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+. +.++++||+||++||++|+.+.|.|+++++++++++.|+.||++.+.+ ++++|+|.++|++
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTI 75 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEE
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEE
Confidence 5578999992 349999999999999999999999999999996699999999999988 9999999999985
No 24
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.69 E-value=5.1e-17 Score=114.17 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCC--ChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~W--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..+|++.+ +.+.++||+||++| |++|+.+.|.|++++++|++.+.|+++|++++++ ++.+|+|+++||+
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTl 87 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPAL 87 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEE
Confidence 557899888 78999999999997 9999999999999999997779999999999998 9999999999985
No 25
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.69 E-value=1.6e-16 Score=117.66 Aligned_cols=77 Identities=14% Similarity=0.424 Sum_probs=66.5
Q ss_pred CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcc--
Q 031285 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMV-- 158 (162)
Q Consensus 82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~-- 158 (162)
.+..+ +.++|++.+.. +.+++++|+|||+||++|+.+.|.++++++++++ +++|++||++++++ ++++|+|.+
T Consensus 29 ~v~~l-~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~ 104 (152)
T cd02962 29 HIKYF-TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSP 104 (152)
T ss_pred ccEEc-CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecC
Confidence 34445 45789988843 4578999999999999999999999999999953 59999999999998 999999998
Q ss_pred ----cccC
Q 031285 159 ----SLMI 162 (162)
Q Consensus 159 ----~Pti 162 (162)
+||+
T Consensus 105 ~v~~~PT~ 112 (152)
T cd02962 105 LSKQLPTI 112 (152)
T ss_pred CcCCCCEE
Confidence 9985
No 26
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.2e-17 Score=128.19 Aligned_cols=77 Identities=30% Similarity=0.549 Sum_probs=71.5
Q ss_pred CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
.++.|.+..+|+..+.. ..++.|+|+|+|+|||||+++.|.|..|+.+| ++..|++||+|++.. .|..+||..+||
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amPT 77 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMPT 77 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCce
Confidence 46788899999999954 67789999999999999999999999999999 899999999999999 999999999998
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 78 F 78 (288)
T KOG0908|consen 78 F 78 (288)
T ss_pred E
Confidence 4
No 27
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.68 E-value=1.8e-16 Score=107.63 Aligned_cols=72 Identities=17% Similarity=0.474 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+.. ..+++++|+||++||++|+.+.|.|+++++++.+.+.++++|.++.++ ++++|+|.++||+
T Consensus 1 s~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~ 72 (97)
T cd02984 1 SEEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTF 72 (97)
T ss_pred CHHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEE
Confidence 35678888854 236999999999999999999999999999975789999999999988 9999999999985
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.68 E-value=1.6e-16 Score=109.00 Aligned_cols=72 Identities=28% Similarity=0.461 Sum_probs=61.9
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCccccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
+..+ +.++|++.+ + +. ++|+|||+||++|+.+.|.|+++++.+++ ++.++++|++.+++ ++++|+|.++||
T Consensus 3 v~~l-~~~~f~~~~----~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt 74 (101)
T cd02994 3 VVEL-TDSNWTLVL----E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPT 74 (101)
T ss_pred eEEc-ChhhHHHHh----C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCE
Confidence 3444 467899877 3 33 78999999999999999999999998853 69999999999988 999999999998
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 75 ~ 75 (101)
T cd02994 75 I 75 (101)
T ss_pred E
Confidence 5
No 29
>PRK09381 trxA thioredoxin; Provisional
Probab=99.68 E-value=2.2e-16 Score=109.85 Aligned_cols=75 Identities=19% Similarity=0.516 Sum_probs=66.0
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++.+++ ++|++.+. +.+++++|+||++||++|+.+.|.|+++++++.+++.++++|++.++. ++++|+|+++|++
T Consensus 5 v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 79 (109)
T PRK09381 5 IIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL 79 (109)
T ss_pred ceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCEE
Confidence 455533 67886652 678999999999999999999999999999998789999999999988 9999999999985
No 30
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.67 E-value=1.8e-16 Score=120.03 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=68.9
Q ss_pred CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS 159 (162)
Q Consensus 80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~ 159 (162)
...+.++++.++|.+.+... ..+.+|||+||++||++|+.+.|.|++|+++| +.++|++||++.. + ++++|+|..+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~-~-l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT-G-ASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch-h-hHHhCCCCCC
Confidence 44677888878999888532 23469999999999999999999999999999 7899999999987 6 9999999999
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
||+
T Consensus 137 PTl 139 (175)
T cd02987 137 PAL 139 (175)
T ss_pred CEE
Confidence 985
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.67 E-value=2.2e-16 Score=107.96 Aligned_cols=69 Identities=25% Similarity=0.464 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+ ..+ +++|+|||+||++|+.+.|.|+++++++++ ++.++++|++.+.+ ++++|+|+++|++
T Consensus 6 ~~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 77 (102)
T cd03005 6 TEDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYPTL 77 (102)
T ss_pred CHHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCCEE
Confidence 456899998 445 499999999999999999999999999955 69999999999988 9999999999984
No 32
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.67 E-value=3.2e-16 Score=107.33 Aligned_cols=71 Identities=25% Similarity=0.450 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..+|++.+. +.+++++|+||++||++|+.+.|.|+++++++.+.+.|+++|++++.+ ++++|+|+++|++
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~ 76 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTI 76 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEE
Confidence 5578888873 456779999999999999999999999999997789999999999988 9999999999985
No 33
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.66 E-value=2.5e-16 Score=115.33 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~la~~~~I~~~Pti 162 (162)
...|++.+ ..++++||+|||+||++|+.+.|.|+++++++++++.|+.||++... + ++++|+|.++|++
T Consensus 10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~-~~~~~~V~~iPt~ 80 (142)
T cd02950 10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLP-EIDRYRVDGIPHF 80 (142)
T ss_pred cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHH-HHHHcCCCCCCEE
Confidence 34577777 78999999999999999999999999999999777899999998653 5 8999999999985
No 34
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.65 E-value=4.9e-16 Score=110.66 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEEEec-------CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-------hHHHH
Q 031285 86 IGSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-------PHKLV 151 (162)
Q Consensus 86 i~~~~~f~~~l~~~~~~~~~vlV~F~a-------~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------~~~la 151 (162)
+.+.++|.+.+.. .++++++|+||| +||++|+.+.|.++++++++++++.|++||++.. .+ ++
T Consensus 6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~-~~ 82 (119)
T cd02952 6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNP-FR 82 (119)
T ss_pred ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchh-hH
Confidence 4577889999853 458999999999 9999999999999999999966899999999864 46 99
Q ss_pred HHcCCc-ccccC
Q 031285 152 ARAGVM-VSLMI 162 (162)
Q Consensus 152 ~~~~I~-~~Pti 162 (162)
.+++|. ++||+
T Consensus 83 ~~~~I~~~iPT~ 94 (119)
T cd02952 83 TDPKLTTGVPTL 94 (119)
T ss_pred hccCcccCCCEE
Confidence 999999 99985
No 35
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.64 E-value=7.1e-16 Score=106.66 Aligned_cols=67 Identities=22% Similarity=0.458 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++|++. .++++++|.|||+||++|+.+.|.|++++++++ ..+.++++|++..++ ++++|+|.++|++
T Consensus 7 ~~~~~~-----~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-----RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTI 76 (104)
T ss_pred hhhhhh-----ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEE
Confidence 566664 347799999999999999999999999999983 349999999999988 9999999999985
No 36
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.64 E-value=1.1e-15 Score=106.70 Aligned_cols=73 Identities=15% Similarity=0.329 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC-ChHHHHH-HcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA-VPHKLVA-RAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-~~~~la~-~~~I~~~Pti 162 (162)
+.++|++++... .++++++|+||++||++|+.+.|.|+++++++++ ++.++.||++. ... ++. .++|+.+||+
T Consensus 7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~-~~~~~~~v~~~Pti 82 (109)
T cd02993 7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE-FAKEELQLKSFPTI 82 (109)
T ss_pred cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh-hHHhhcCCCcCCEE
Confidence 456888887431 5689999999999999999999999999999965 59999999998 455 776 5999999985
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.64 E-value=6e-16 Score=106.86 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCC----hHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~----~~~la~~~~I~~~Pti 162 (162)
+.|.+.+ +.+++++|+||++||++|+.+.|.+ +++++.+++++.++.||++.+ .+ ++++|+|.++||+
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITA-LLKRFGVFGPPTY 76 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHH-HHHHcCCCCCCEE
Confidence 4567777 7899999999999999999999988 688888866899999999873 45 9999999999985
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.64 E-value=1e-15 Score=104.82 Aligned_cols=70 Identities=20% Similarity=0.426 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA--VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~la~~~~I~~~Pti 162 (162)
+..+|++.+ +++++++|+|||+||++|+.+.|.++++++.++ +.+.++++|++. +.. ++++++|+++|++
T Consensus 6 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~i~~~Pt~ 79 (104)
T cd02997 6 TDEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA-LKEEYNVKGFPTF 79 (104)
T ss_pred chHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH-HHHhCCCccccEE
Confidence 345888888 667899999999999999999999999999985 568999999998 777 9999999999985
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.63 E-value=1.4e-15 Score=103.63 Aligned_cols=70 Identities=31% Similarity=0.559 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+ .++++++|+||++||++|+.+.|.|+++++.+++ ++.++.+|++.+.+ ++++|+|.++|++
T Consensus 2 ~~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~ 73 (102)
T TIGR01126 2 TASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTI 73 (102)
T ss_pred chhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEE
Confidence 346788888 6899999999999999999999999999999955 69999999999999 9999999999974
No 40
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.62 E-value=9.9e-16 Score=120.02 Aligned_cols=78 Identities=17% Similarity=0.397 Sum_probs=67.2
Q ss_pred ceecCCHHHHHHHHHHHh-cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 83 LTPIGSESQFDRVIAEAQ-QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~-~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
+..+ +.++|++.+.... ..+++++|+|||+||++|+.+.|.|+++++++++.+.|+++|++++++ ++++|+|+++||
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~PT 109 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYPT 109 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCCE
Confidence 4444 5679999884311 136899999999999999999999999999997789999999999988 999999999998
Q ss_pred C
Q 031285 162 I 162 (162)
Q Consensus 162 i 162 (162)
+
T Consensus 110 l 110 (224)
T PTZ00443 110 L 110 (224)
T ss_pred E
Confidence 5
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.60 E-value=4.1e-15 Score=100.80 Aligned_cols=70 Identities=30% Similarity=0.689 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.++|.+.+. ..+++++|+||++||++|+.+.|.++++++++.+++.|+++|++.+.. ++++|+|..+|++
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~ 72 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTL 72 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEE
Confidence 467888773 457799999999999999999999999999996679999999999988 9999999999984
No 42
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.60 E-value=3.4e-15 Score=102.19 Aligned_cols=71 Identities=30% Similarity=0.549 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCC-ChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA-VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+. +.+++++|+||++||++|+.+.|.+++++++++ +.+.++++|++. +++ ++++|+|.++|++
T Consensus 6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P~~ 79 (105)
T cd02998 6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFPTL 79 (105)
T ss_pred chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcCEE
Confidence 3467888772 456799999999999999999999999999985 469999999999 888 9999999999985
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.60 E-value=5e-15 Score=101.23 Aligned_cols=67 Identities=19% Similarity=0.503 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 92 f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++..+. +.+++++|+||++||++|+.+.|.++++++++++++.++++|++++++ ++++++|.++|++
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~ 71 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTV 71 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEE
Confidence 455553 689999999999999999999999999999997789999999999998 9999999999985
No 44
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.60 E-value=3.7e-15 Score=105.23 Aligned_cols=71 Identities=25% Similarity=0.438 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNA--VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~--~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+. ..+++++|+|||+||++|+.+.|.|++++++++ +.+.|+++|++. +.+ ++++|+|+++|++
T Consensus 7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~-~~~~~~i~~~Pt~ 82 (114)
T cd02992 7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVA-LCRDFGVTGYPTL 82 (114)
T ss_pred CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHH-HHHhCCCCCCCEE
Confidence 5678999884 456899999999999999999999999999873 348999999754 456 9999999999985
No 45
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.59 E-value=3.9e-15 Score=105.01 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=56.4
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.++..++|+||++||++|+.+.|.++++++++ +++.|.++|++++++ ++++|+|+++||+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~ 79 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTT 79 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEE
Confidence 66788999999999999999999999999998 789999999999988 9999999999985
No 46
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.59 E-value=4.6e-15 Score=101.47 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+++ .+.++++|++.+ + ++..+++.++|++
T Consensus 6 ~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~-~~~~~~~~~~Pt~ 77 (104)
T cd02995 6 VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-D-VPSEFVVDGFPTI 77 (104)
T ss_pred chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-h-hhhhccCCCCCEE
Confidence 4568888883 5578999999999999999999999999999854 599999999987 5 7899999999985
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=6.2e-15 Score=99.19 Aligned_cols=70 Identities=29% Similarity=0.534 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..+|.+.+ .++++++|+||++||++|+.+.|.++++++.+ .+.+.|+.+|++.+.. ++++|+|.++|++
T Consensus 4 ~~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~ 75 (101)
T cd02961 4 TDDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTI 75 (101)
T ss_pred cHHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEE
Confidence 446888888 66779999999999999999999999999999 5789999999999888 9999999999985
No 48
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.55 E-value=1e-14 Score=103.60 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc--cccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV--SLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~--~Pti 162 (162)
++++.+..++.++++++|+|||+||++|+.+.|.+.+..+.+.....|+.||++...+...++|++.+ +||+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceE
Confidence 36666666668999999999999999999999999998776544456777787776543678999987 9985
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.54 E-value=1.9e-14 Score=102.52 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCC-CeEEEEEecCCChhhhhhhHhHH---HHHHHhCCCeEEEEEECCCC-------------hHHHHHH
Q 031285 91 QFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAV-------------PHKLVAR 153 (162)
Q Consensus 91 ~f~~~l~~~~~~~-~~vlV~F~a~WC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~-------------~~~la~~ 153 (162)
.+++.+ +.+ ++++|+|||+||++|+.++|.+. ++.+.+.+++.+++||++.. .+ ++.+
T Consensus 5 ~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~-l~~~ 79 (125)
T cd02951 5 DLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKE-LARK 79 (125)
T ss_pred HHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHH-HHHH
Confidence 444455 778 99999999999999999999885 67777766799999999875 45 9999
Q ss_pred cCCcccccC
Q 031285 154 AGVMVSLMI 162 (162)
Q Consensus 154 ~~I~~~Pti 162 (162)
|+|.++||+
T Consensus 80 ~~v~~~Pt~ 88 (125)
T cd02951 80 YRVRFTPTV 88 (125)
T ss_pred cCCccccEE
Confidence 999999985
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.51 E-value=3.7e-14 Score=121.18 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHH-HHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLV-ARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la-~~~~I~~~Pti 162 (162)
+.++|++.+.. ++.++++||+|||+||++|+.+.|.|++++++|++ ++.|++||+|.+...++ ++|+|+++|||
T Consensus 357 ~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi 432 (463)
T TIGR00424 357 SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 432 (463)
T ss_pred CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence 55789998842 16899999999999999999999999999999965 49999999997642244 78999999986
No 51
>PLN02309 5'-adenylylsulfate reductase
Probab=99.48 E-value=1.2e-13 Score=117.98 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC-CChHHHHH-HcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN-AVPHKLVA-RAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~la~-~~~I~~~Pti 162 (162)
+.++|++++... +.++++||+|||+||++|+.+.|.|++++++|.+ ++.|+++|++ .+.+ ++. +|+|+++|||
T Consensus 351 t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~-la~~~~~I~~~PTi 426 (457)
T PLN02309 351 SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE-FAKQELQLGSFPTI 426 (457)
T ss_pred CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH-HHHhhCCCceeeEE
Confidence 667888887432 6899999999999999999999999999999954 5999999999 6666 786 6999999986
No 52
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=1e-13 Score=106.38 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=62.3
Q ss_pred CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS 159 (162)
Q Consensus 80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~ 159 (162)
...+.++ +..+|...+..+ ..+.+|||+||++||++|+.+.|.|++|+++| +.++|++||++. .+.+|+|..+
T Consensus 81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~----~~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQ----CIPNYPDKNL 153 (192)
T ss_pred CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHH----hHhhCCCCCC
Confidence 3456667 456777666432 33569999999999999999999999999999 789999999974 3689999999
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
||+
T Consensus 154 PTl 156 (192)
T cd02988 154 PTI 156 (192)
T ss_pred CEE
Confidence 985
No 53
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.1e-14 Score=120.93 Aligned_cols=70 Identities=24% Similarity=0.464 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|++.+ ..+..++|.|||||||+|++++|.+++.++.+. ..+.+++||++.+.+ +|.+|+|+++||+
T Consensus 31 t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~-~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 31 TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD-LASKYEVRGYPTL 103 (493)
T ss_pred ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh-hHhhhcCCCCCeE
Confidence 668999999 889999999999999999999999999999983 369999999999988 9999999999996
No 54
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.47 E-value=1.2e-13 Score=90.85 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.|..||++||++|+.+.|.++++++++++.+.+++||++++++ ++++|+|.++|++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~ 57 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAI 57 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEE
Confidence 4678999999999999999999999997679999999999988 9999999999985
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.46 E-value=2e-13 Score=90.00 Aligned_cols=66 Identities=32% Similarity=0.670 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+|++.+ ..+++++|.||++||++|+.+.+.+++++++ .+++.++.+|++.+.+ ++++|++.++|++
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~ 67 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTF 67 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEE
Confidence 466677 5569999999999999999999999999998 4889999999999988 9999999999985
No 56
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.45 E-value=3e-13 Score=96.74 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh----------HHHHHHcCC-
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------HKLVARAGV- 156 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----------~~la~~~~I- 156 (162)
+.++|.+.+ ++++.++|+||++||++|+.+.|.|++++++. ++.++.||++.+. .++.++|++
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 557888888 78999999999999999999999999999984 5778889988543 125567654
Q ss_pred ---cccccC
Q 031285 157 ---MVSLMI 162 (162)
Q Consensus 157 ---~~~Pti 162 (162)
.++||+
T Consensus 86 ~~i~~~PT~ 94 (122)
T TIGR01295 86 TSFMGTPTF 94 (122)
T ss_pred ccCCCCCEE
Confidence 459985
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=2.7e-13 Score=114.74 Aligned_cols=70 Identities=29% Similarity=0.557 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++|+..+ +++++++|+|||+||++|+.+.|.++++++.+. +++.|++||++.+.+ ++++|+|.++||+
T Consensus 7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYPTL 79 (462)
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCccccEE
Confidence 567899998 678899999999999999999999999998873 349999999999988 9999999999985
No 58
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.43 E-value=6.5e-13 Score=116.70 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=69.8
Q ss_pred CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh---HHHHHH
Q 031285 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---HKLVAR 153 (162)
Q Consensus 80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~---~~la~~ 153 (162)
....+.+.+.+++++.+..+++++|+|+|+|||+||++|+.+.+.. +++.+++ +++.++++|++++. .+++++
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHH
Confidence 3457788899999999987767899999999999999999998875 6788888 57999999998642 238999
Q ss_pred cCCcccccC
Q 031285 154 AGVMVSLMI 162 (162)
Q Consensus 154 ~~I~~~Pti 162 (162)
|+|.++|++
T Consensus 530 ~~v~g~Pt~ 538 (571)
T PRK00293 530 YNVLGLPTI 538 (571)
T ss_pred cCCCCCCEE
Confidence 999999985
No 59
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.43 E-value=4.8e-13 Score=98.46 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=40.1
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--------CeEEEEEECCCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--------RLRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~ 146 (162)
.+|++++|+|||+||++|+.++|.|+++.+++.+ ++.++.|+.|.+
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~ 76 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQS 76 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCC
Confidence 5699999999999999999999999998887632 589999998754
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.42 E-value=4.6e-13 Score=114.40 Aligned_cols=74 Identities=28% Similarity=0.481 Sum_probs=65.3
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVS 159 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~ 159 (162)
+..+ +..+|++.+ .+++.++|+|||+||++|+++.|.++++++.+. +++.|++||++.+.+ ++++|+|.++
T Consensus 34 v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGY 107 (477)
T ss_pred cEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcc
Confidence 3344 567899988 678899999999999999999999999998773 469999999999998 9999999999
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
||+
T Consensus 108 Pt~ 110 (477)
T PTZ00102 108 PTI 110 (477)
T ss_pred cEE
Confidence 985
No 61
>PHA02125 thioredoxin-like protein
Probab=99.42 E-value=2.7e-13 Score=88.75 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=44.1
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+++|||+||++|+.+.|.|+++. +.+++||.+.+.+ ++++|+|.++||+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~ 50 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTL 50 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeE
Confidence 78999999999999999997653 4689999999988 9999999999985
No 62
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.42 E-value=3.8e-13 Score=85.70 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=50.7
Q ss_pred EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
-++.||++||++|+.+.+.++++++++ +++.+..+|++++++ +++++||.++|+|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti 56 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAI 56 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEE
Confidence 367899999999999999999998876 789999999999988 9999999999985
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.42 E-value=4.9e-13 Score=91.59 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc--ccccC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--VSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~--~~Pti 162 (162)
.++++++.||++||++|..+.|.+++++++|.+++.|+.||++++++ +++.|||. ++|++
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~ 72 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVI 72 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEE
Confidence 47899999999999999999999999999998889999999999988 99999999 99975
No 64
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-13 Score=116.13 Aligned_cols=68 Identities=25% Similarity=0.433 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
..+|++++. +.++-|+|.|||||||||+++.|.+++|++.|++ ++.++++|++.|.- ...+++++|||
T Consensus 373 gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~---~~~~~~~fPTI 442 (493)
T KOG0190|consen 373 GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV---PSLKVDGFPTI 442 (493)
T ss_pred ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC---ccccccccceE
Confidence 368998885 7899999999999999999999999999999953 69999999999843 55677889986
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=99.38 E-value=6.5e-13 Score=113.47 Aligned_cols=75 Identities=17% Similarity=0.361 Sum_probs=64.8
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSL 160 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~P 160 (162)
+..+ ..++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.+.+ .+.++++|++.+.. .+++++|+++|
T Consensus 359 v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~P 433 (477)
T PTZ00102 359 VKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFP 433 (477)
T ss_pred eEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccC
Confidence 3444 3478888763 6799999999999999999999999999999843 59999999999988 89999999999
Q ss_pred cC
Q 031285 161 MI 162 (162)
Q Consensus 161 ti 162 (162)
|+
T Consensus 434 t~ 435 (477)
T PTZ00102 434 TI 435 (477)
T ss_pred eE
Confidence 85
No 66
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.38 E-value=1.4e-12 Score=93.86 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=51.8
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCCh------------------------HHHHHH
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVP------------------------HKLVAR 153 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~------------------------~~la~~ 153 (162)
.+|++++|+||++||++|+.++|.++++++++++ ++.++.|+++... ..+++.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 4689999999999999999999999999998853 5888888887643 126677
Q ss_pred cCCcccccC
Q 031285 154 AGVMVSLMI 162 (162)
Q Consensus 154 ~~I~~~Pti 162 (162)
|+|.++|++
T Consensus 95 ~~v~~iPt~ 103 (132)
T cd02964 95 FKVEGIPTL 103 (132)
T ss_pred cCCCCCCEE
Confidence 999999974
No 67
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.38 E-value=3.4e-13 Score=108.64 Aligned_cols=70 Identities=17% Similarity=0.419 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++++..... .....++|+||||||++|+++.|.|.++.-++++ -+++.++|+...+. +|.+|+|+++|||
T Consensus 32 DLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTI 104 (468)
T KOG4277|consen 32 DLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTI 104 (468)
T ss_pred hhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceE
Confidence 344444332 5678899999999999999999999999988733 49999999999999 9999999999997
No 68
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.36 E-value=1.3e-12 Score=85.87 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=45.7
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.|+||++||++|+.+.|.+++++++++.++.+++|| +.+ .+.+|++.++|++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~-~a~~~~v~~vPti 53 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMN-EILEAGVTATPGV 53 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHH-HHHHcCCCcCCEE
Confidence 378999999999999999999999997778988887 344 5888999999985
No 69
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.35 E-value=2.6e-12 Score=92.01 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=51.6
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCCh-----------------------HHHHHHc
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVP-----------------------HKLVARA 154 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~-----------------------~~la~~~ 154 (162)
..++++||+||++||++|+.++|.++++.+++. +++.++.|++|... ..++++|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 358999999999999999999999999998884 36888888887542 1277899
Q ss_pred CCcccccC
Q 031285 155 GVMVSLMI 162 (162)
Q Consensus 155 ~I~~~Pti 162 (162)
+|.++|++
T Consensus 96 ~v~~~P~~ 103 (131)
T cd03009 96 KIEGIPTL 103 (131)
T ss_pred CCCCCCEE
Confidence 99999974
No 70
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.35 E-value=1.2e-12 Score=91.24 Aligned_cols=59 Identities=12% Similarity=0.258 Sum_probs=46.5
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCccccc
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMVSLM 161 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I~~~Pt 161 (162)
++++++|+||++||++|+.+.|.++++.+++++++.++.+. +... ..+++++++..+|+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~ 81 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPY 81 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcE
Confidence 48999999999999999999999999999886677777663 2221 12677788876775
No 71
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.33 E-value=2.1e-12 Score=91.47 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEec--CCCh---hhhhhhHhHHHHHHHhCCCeEEEEEECC-----CChHHHHHHcCCc
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMA--SWCR---KCIYLKPKLEKLAADYHPRLRFYNVDVN-----AVPHKLVARAGVM 157 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a--~WC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~~la~~~~I~ 157 (162)
+..+|++.+ .+++.+||.||| |||+ +|+.+.|.+.+.+ +.+.+++||++ ++.+ ||++|+|+
T Consensus 7 ~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~-L~~~y~I~ 77 (116)
T cd03007 7 DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNME-LGERYKLD 77 (116)
T ss_pred ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhHH-HHHHhCCC
Confidence 568999999 788999999999 8888 5555544444333 35899999994 4556 99999999
Q ss_pred --ccccC
Q 031285 158 --VSLMI 162 (162)
Q Consensus 158 --~~Pti 162 (162)
++|||
T Consensus 78 ~~gyPTl 84 (116)
T cd03007 78 KESYPVI 84 (116)
T ss_pred cCCCCEE
Confidence 99986
No 72
>PTZ00062 glutaredoxin; Provisional
Probab=99.33 E-value=3.1e-12 Score=99.00 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 87 ~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+.++|.+.+. ...+.+|++|||+||++|+.+.|.+++|+++| +++.|++||.+ |+|.++|++
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtf 66 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVF 66 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEE
Confidence 46678888882 23377899999999999999999999999999 88999999988 899999974
No 73
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.30 E-value=1.1e-11 Score=88.90 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=51.8
Q ss_pred HhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCChHHHHHH--------cCCcccccC
Q 031285 99 AQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPHKLVAR--------AGVMVSLMI 162 (162)
Q Consensus 99 ~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~la~~--------~~I~~~Pti 162 (162)
+++.+|+++|+|+|+||++|+.+.+. | .++.+.+..++.++++|+++.++ ++++ ||+.++|++
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCCCCCEE
Confidence 34899999999999999999999873 3 36777765689999999999877 6553 589999985
No 74
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.29 E-value=8.2e-12 Score=108.19 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=51.1
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEEC----------------------------CCChHHHH
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDV----------------------------NAVPHKLV 151 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~----------------------------d~~~~~la 151 (162)
+++++|||+|||+||++|+.++|.|++++++++ +++.|+.|+. |.+.. ++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~-la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT-LA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH-HH
Confidence 579999999999999999999999999999985 4577776643 33445 88
Q ss_pred HHcCCcccccC
Q 031285 152 ARAGVMVSLMI 162 (162)
Q Consensus 152 ~~~~I~~~Pti 162 (162)
+.|+|.++|+.
T Consensus 133 k~fgV~giPTt 143 (521)
T PRK14018 133 QSLNISVYPSW 143 (521)
T ss_pred HHcCCCCcCeE
Confidence 99999999973
No 75
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.28 E-value=1.3e-11 Score=87.78 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=47.5
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-----------------------CChHHHHHHcCCc
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----------------------AVPHKLVARAGVM 157 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------------------~~~~~la~~~~I~ 157 (162)
.++++++|+||++||++|+.+.|.++++.+++ ++.++.|+.+ .... +++.|++.
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~v~ 99 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR-VGIDLGVY 99 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch-HHHhcCCC
Confidence 46899999999999999999999999999886 3888877743 3334 67778888
Q ss_pred cccc
Q 031285 158 VSLM 161 (162)
Q Consensus 158 ~~Pt 161 (162)
++|+
T Consensus 100 ~~P~ 103 (127)
T cd03010 100 GVPE 103 (127)
T ss_pred CCCe
Confidence 8884
No 76
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.28 E-value=7.9e-12 Score=92.72 Aligned_cols=58 Identities=17% Similarity=0.423 Sum_probs=45.6
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC------------hHHHH-HHc---CCccccc
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------------PHKLV-ARA---GVMVSLM 161 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~la-~~~---~I~~~Pt 161 (162)
..++..+|+|||+||++|++++|.+++++++| ++.++.|++|.. .+ .. ..| ++.++|+
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--~~~Vi~Vs~d~~~~~~fp~~~~~~~~-~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--GLPVYAFSLDGQGLTGFPDPLPATPE-VMQTFFPNPRPVVTPA 121 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc--CCcEEEEEeCCCcccccccccCCchH-HHHHHhccCCCCCCCe
Confidence 34666799999999999999999999999998 466777777643 23 33 345 7899997
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.28 E-value=1.3e-11 Score=99.44 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=51.5
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----------hHHHHHHcCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----------PHKLVARAGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~la~~~~I~~~Pti 162 (162)
..++++||+||++||++|+.++|.|++++++|+ +.++.|++|.. .. ++++|||.++|++
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~-la~~~gV~~vPtl 233 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAG-QAQQLKIRTVPAV 233 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHH-HHHHcCCCcCCeE
Confidence 568999999999999999999999999999993 67777777653 35 8999999999985
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.26 E-value=2.1e-11 Score=94.86 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+..+|+.||++||++|+.+.|.+++++.++ +++.+.++|.+..++ ++++|+|.++||+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl 190 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKI 190 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEE
Confidence 3444566699999999999999999999986 789999999999999 9999999999985
No 79
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.25 E-value=2.7e-11 Score=81.86 Aligned_cols=44 Identities=30% Similarity=0.606 Sum_probs=38.9
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCC
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAV 146 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~ 146 (162)
||+++|+|||+||++|+.+.|.+.++.++|+ +++.|+.|+.|..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 6899999999999999999999999999996 6899999998754
No 80
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.23 E-value=1.2e-11 Score=104.78 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
...+|.+.+. +.++.++|+|||+||++|+.+.|.++++++.+.+ ++.|+++|++.+. +.. ++|+++|++
T Consensus 352 ~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~ 423 (462)
T TIGR01130 352 VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTI 423 (462)
T ss_pred eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEE
Confidence 4567888873 6799999999999999999999999999999965 6999999999874 344 999999985
No 81
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.21 E-value=4.9e-11 Score=80.76 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=54.5
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+..-+..|+++||++|....+.++++++++ +++.+..+|+++.++ ++++|+|.++|++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~ 69 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAI 69 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEE
Confidence 5666788899999999999999999999998 789999999999998 9999999999985
No 82
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.2e-11 Score=102.17 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=58.6
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
..+++++|+||++||++|+.+.|.+++++..+++.+.++.||++.+.+ ++++|+|.++|||
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTL 105 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEE
Confidence 789999999999999999999999999999997789999999999999 9999999999986
No 83
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.18 E-value=2.8e-11 Score=80.30 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++++.+..|++.+++++|+|+++||++|+.+...+ .++.+.+..++.++++|.+.... .. ++...++|++
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~-~~-~~~~~~~P~~ 77 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP-NA-QFDRQGYPTF 77 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH-HH-HHHHCSSSEE
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh-hH-HhCCccCCEE
Confidence 57777777889999999999999999999998777 45666455679999999987765 22 2222568864
No 84
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.15 E-value=6.4e-11 Score=95.44 Aligned_cols=68 Identities=22% Similarity=0.435 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-----CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-----HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-----~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++++.++ ..+..|+|.|||+||+..+.++|.|++.+..+ ++++.+++||++++.+ |+.+|.|..+||+
T Consensus 4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTl 76 (375)
T KOG0912|consen 4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTL 76 (375)
T ss_pred ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCcee
Confidence 5678888 77999999999999999999999999888766 2579999999999988 9999999999996
No 85
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.14 E-value=1.7e-10 Score=78.61 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=53.4
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC-----------------------hHHHHHHcCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-----------------------PHKLVARAGV 156 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-----------------------~~~la~~~~I 156 (162)
..+++++|+||++||++|+...+.+.++.++++ +++.++.|+++.. .. +++.|++
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 95 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGE-LAKAYGV 95 (116)
T ss_pred cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcch-HHHhcCc
Confidence 348999999999999999999999999999995 5799999999985 45 7888888
Q ss_pred cccccC
Q 031285 157 MVSLMI 162 (162)
Q Consensus 157 ~~~Pti 162 (162)
.++|++
T Consensus 96 ~~~P~~ 101 (116)
T cd02966 96 RGLPTT 101 (116)
T ss_pred CccceE
Confidence 888863
No 86
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.13 E-value=1.8e-10 Score=89.52 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=49.2
Q ss_pred CCCeEEEEEec---CCChhhhhhhHhHHHHHHHhCCC--eEEEEEECCCChHHHHHHcCCcccccC
Q 031285 102 LDESVIIVWMA---SWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a---~WC~~C~~~~p~l~~l~~~~~~~--v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+...++.|++ +||++|+.+.|.++++++++ ++ +.++.+|.+++++ ++++|+|+++||+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~ 81 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTT 81 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEE
Confidence 34445666888 99999999999999999999 55 4566667778888 9999999999985
No 87
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.13 E-value=2.1e-10 Score=87.27 Aligned_cols=44 Identities=20% Similarity=0.407 Sum_probs=37.8
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (162)
.++++++|+|||+||++|+.++|.++++.+ .++.++.|+.++..
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~ 109 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDR 109 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCH
Confidence 479999999999999999999999999864 36889999876543
No 88
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.09 E-value=4.4e-11 Score=83.10 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=47.7
Q ss_pred hcCCCeEEEEEecCCChhhhhhhHhHHHH---HHHhCCCeEEEEEECCCCh-------------------HHHHHHcCCc
Q 031285 100 QQLDESVIIVWMASWCRKCIYLKPKLEKL---AADYHPRLRFYNVDVNAVP-------------------HKLVARAGVM 157 (162)
Q Consensus 100 ~~~~~~vlV~F~a~WC~~C~~~~p~l~~l---~~~~~~~v~~~~vd~d~~~-------------------~~la~~~~I~ 157 (162)
+.++++++++||++||+.|+.+.+.+.+. ...+.+++.++.++++... .+++++|||.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 47899999999999999999999998854 4444456899999987542 2389999999
Q ss_pred ccccC
Q 031285 158 VSLMI 162 (162)
Q Consensus 158 ~~Pti 162 (162)
++||+
T Consensus 82 gtPt~ 86 (112)
T PF13098_consen 82 GTPTI 86 (112)
T ss_dssp SSSEE
T ss_pred ccCEE
Confidence 99985
No 89
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.09 E-value=3.3e-10 Score=80.68 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=38.0
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEEC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDV 143 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~ 143 (162)
+++++||+||++||++|+..+|.|+++.++|+ .++.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 58999999999999999999999999999995 3588888865
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.09 E-value=2.5e-10 Score=80.40 Aligned_cols=57 Identities=32% Similarity=0.595 Sum_probs=44.9
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-----------------------CCChHHHHHHcCCc
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM 157 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~la~~~~I~ 157 (162)
..+++++|+||++||++|+.+.|.++++++++ .++.|.. +.+.+ ++++|+|.
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~ 92 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGV-ISARWGVS 92 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcH-HHHhCCCC
Confidence 45799999999999999999999999998774 3333332 23345 88999999
Q ss_pred ccccC
Q 031285 158 VSLMI 162 (162)
Q Consensus 158 ~~Pti 162 (162)
++|++
T Consensus 93 ~~P~~ 97 (123)
T cd03011 93 VTPAI 97 (123)
T ss_pred cccEE
Confidence 99974
No 91
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=2e-10 Score=107.10 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=50.0
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEEC---C------------------------CChHHHHH
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV---N------------------------AVPHKLVA 152 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~---d------------------------~~~~~la~ 152 (162)
.++++|||+|||+||++|+.+.|.|+++.++|++ ++.++.|.. | .... +++
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~-~~~ 496 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMY-LWR 496 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchH-HHH
Confidence 3699999999999999999999999999999954 488888842 2 2233 778
Q ss_pred HcCCcccccC
Q 031285 153 RAGVMVSLMI 162 (162)
Q Consensus 153 ~~~I~~~Pti 162 (162)
+|+|.++|++
T Consensus 497 ~~~V~~iPt~ 506 (1057)
T PLN02919 497 ELGVSSWPTF 506 (1057)
T ss_pred hcCCCccceE
Confidence 8999999973
No 92
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.06 E-value=5.9e-10 Score=83.82 Aligned_cols=41 Identities=34% Similarity=0.549 Sum_probs=35.3
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 144 (162)
..+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~ 101 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYK 101 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 4689999999999999999999999988753 4778888764
No 93
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.06 E-value=5.2e-10 Score=75.41 Aligned_cols=59 Identities=31% Similarity=0.550 Sum_probs=52.7
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcC--CcccccC
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAG--VMVSLMI 162 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~--I~~~Pti 162 (162)
+++++++||++||++|+.+.|.+.++++++...+.++.+|+. ...+ ++..|+ +..+|++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~ 93 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTL 93 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeE
Confidence 889999999999999999999999999999557999999997 6777 899998 8887753
No 94
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=6.2e-11 Score=102.08 Aligned_cols=71 Identities=21% Similarity=0.398 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNA--VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~--~~~~la~~~~I~~~Pti 162 (162)
+.++|+..+. .+.+..+|.||++|||+|+++.|.|++++++.. +-+.++.||+-. |.. +|.+|+|.++|+|
T Consensus 45 d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~-lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 45 DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK-LCREFSVSGYPTL 120 (606)
T ss_pred ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh-hHhhcCCCCCcee
Confidence 6688999984 344688999999999999999999999999984 348888999854 334 9999999999986
No 95
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.03 E-value=7.8e-10 Score=80.31 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=39.6
Q ss_pred CCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
+|+++||+||++ ||++|+..+|.++++.++|+ .++.++.|..+..
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 699999999999 99999999999999999974 4589988886544
No 96
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.01 E-value=1e-09 Score=81.63 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=51.3
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC----------------------hHHHHHHcCCc
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV----------------------PHKLVARAGVM 157 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------~~~la~~~~I~ 157 (162)
..+++++|+||++||++|+...+.+.++.+++++ ++.++.|+.+.. .+ ++++|+|.
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~ 137 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQ-VIDAYGVG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcch-HHHHcCCC
Confidence 3589999999999999999999999999999954 489999987643 33 77889999
Q ss_pred cccc
Q 031285 158 VSLM 161 (162)
Q Consensus 158 ~~Pt 161 (162)
.+|+
T Consensus 138 ~~P~ 141 (173)
T PRK03147 138 PLPT 141 (173)
T ss_pred CcCe
Confidence 8886
No 97
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.98 E-value=1.1e-09 Score=84.37 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=39.7
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.+|+++||+|||+||++|+..+|.|+++.++|++ ++.++.|+++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 3589999999999999999999999999999954 5999999874
No 98
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.98 E-value=1.2e-09 Score=78.81 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 86 i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
|....+|++.+..+++++|+++|+|+++||++|+.+...+ .++.+....++..+.++.+....... ..+ .++|++
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPti 83 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRI 83 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeE
Confidence 3344578888888889999999999999999999998765 34555444456777787763321011 233 567874
No 99
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.97 E-value=1.4e-09 Score=82.60 Aligned_cols=53 Identities=17% Similarity=0.426 Sum_probs=43.0
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC------------hHHHHHHcCC--ccccc
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------------PHKLVARAGV--MVSLM 161 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~la~~~~I--~~~Pt 161 (162)
+|+||++||++|++++|.+++++++| ++.++.|++|.. ...+.+.|++ .++|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPt 139 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPT 139 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCe
Confidence 77899999999999999999999999 478887877643 2226678885 58886
No 100
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.95 E-value=2.2e-09 Score=75.31 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCC-hHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAV-PHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~-~~~la~~~~I~~~Pti 162 (162)
.+|++.+..|++++|+++|+|+++||.+|+.+... | +++.+.+...+.++++|++.. ...++..|++.++|++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 35778888888999999999999999999998754 3 456666655789999999752 2238999999999985
No 101
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.93 E-value=2.7e-09 Score=78.49 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=38.4
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN 144 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d 144 (162)
.|+++||+|||+||+ |+..+|.|+++.++|+ .++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 589999999999999 9999999999999995 46999999875
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.92 E-value=2.6e-09 Score=81.60 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=33.1
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd 142 (162)
.++++++|+||++||++|+.+.|.+.++.++++ +.++.|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is 111 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMIS 111 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEe
Confidence 478999999999999999999999999988763 3444444
No 103
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.90 E-value=3.3e-09 Score=83.88 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=47.0
Q ss_pred CCCcCceecCCHH-HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 78 PVSIPLTPIGSES-QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 78 ~~~~~~~~i~~~~-~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.+.+.+.++++.. .+.+ ..|+++||+|||+||++|+.++|.|+++.++|++ ++.++.|+++
T Consensus 79 aPdF~l~d~~G~~vsLsd------~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 79 VHDFTVKDIDGKDVALSK------FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCceEEECCCCCEEeHHH------hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 4555555555421 1222 3589999999999999999999999999999954 5999999974
No 104
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.86 E-value=8e-09 Score=76.01 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=39.2
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEEC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV 143 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 143 (162)
.+|+++||+|||+||++|+..+|.++++.++|++ ++.++.|++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 4589999999999999999999999999999954 699999986
No 105
>smart00594 UAS UAS domain.
Probab=98.84 E-value=1.3e-08 Score=72.50 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~~~Pti 162 (162)
.+|++.+..+++.+|.++|+|+++||+.|+.+.... .++.+.+..++.++++|++... ..++++|++.++|++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 468888888888999999999999999999987653 3555555557899999987553 239999999999985
No 106
>PLN02412 probable glutathione peroxidase
Probab=98.84 E-value=8.9e-09 Score=77.16 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.|+++||+||++||++|+..+|.|+++.++|++ ++.++.|+.+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 589999999999999999999999999999954 5999999875
No 107
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.8e-09 Score=87.64 Aligned_cols=71 Identities=24% Similarity=0.446 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..+|...+. .....++|.||+|||++|+.++|.+++++..++ ..+.++.+|++.... ++.+++|..+|++
T Consensus 150 ~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~Pt~ 222 (383)
T KOG0191|consen 150 TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYPTL 222 (383)
T ss_pred cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCceE
Confidence 4466777663 678889999999999999999999999999984 569999999997777 9999999999985
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.74 E-value=3.3e-08 Score=73.86 Aligned_cols=44 Identities=14% Similarity=0.408 Sum_probs=40.2
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA 145 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 145 (162)
.++++||+||++||+.|....+.+.++.++|+ .++.|+.|+.+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 68999999999999999999999999999995 479999998864
No 109
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.73 E-value=2.3e-08 Score=75.91 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=36.5
Q ss_pred CCCeE-EEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 102 ~~~~v-lV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.|+++ |+.+||+||++|+.++|.|+++.++|++ ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 57754 4566999999999999999999999954 5999999864
No 110
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.72 E-value=4e-08 Score=85.48 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=60.6
Q ss_pred eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHH---HHHHHhCCCeEEEEEECCCChH---HHHHHcCCc
Q 031285 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAVPH---KLVARAGVM 157 (162)
Q Consensus 84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~ 157 (162)
+.+.+...+++.+.+ +++|+|+|||||+||-.||.+++..- +...+. .+++..+.|++++.. ++.++||+-
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 667777789999955 45569999999999999999988753 333444 689999999987753 277899999
Q ss_pred ccccC
Q 031285 158 VSLMI 162 (162)
Q Consensus 158 ~~Pti 162 (162)
++|++
T Consensus 534 G~P~~ 538 (569)
T COG4232 534 GVPTY 538 (569)
T ss_pred CCCEE
Confidence 99985
No 111
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.72 E-value=3.3e-08 Score=71.51 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=46.0
Q ss_pred CCCeEEEEEecCC-ChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccc
Q 031285 102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSL 160 (162)
Q Consensus 102 ~~~~vlV~F~a~W-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~P 160 (162)
.|+++||+||++| |++|+..+|.|+++.+++ .++.++.|+.|.... ++.+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 5889999999999 699999999999999998 589999999876421 144555554444
No 112
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.70 E-value=4e-08 Score=73.56 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=47.6
Q ss_pred CCCeEEEEEecCC-ChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCcccc
Q 031285 102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMVSL 160 (162)
Q Consensus 102 ~~~~vlV~F~a~W-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~la~~~~I~~~P 160 (162)
.|+++||+||++| |++|..++|.|+++++++ .++.++.|+.|... .++++++++..+|
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~~~~f~~~~~~~~~~ 103 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFAQKRFCGAEGLENVI 103 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHHHHHHHHhCCCCCce
Confidence 5889999999999 999999999999999998 58999999987532 2266677765444
No 113
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.69 E-value=2.4e-08 Score=76.12 Aligned_cols=43 Identities=5% Similarity=0.028 Sum_probs=35.9
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEE------EEEECCCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF------YNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~~ 146 (162)
-.||++||+|||+||++|+..+|.+++++++ ++.+ +.||.++.
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDA 105 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccc
Confidence 4699999999999999999999999999654 3555 77777653
No 114
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.65 E-value=7.1e-08 Score=57.94 Aligned_cols=54 Identities=33% Similarity=0.587 Sum_probs=45.6
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHH---HHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV---ARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la---~~~~I~~~Pti 162 (162)
++.||++||+.|+.+.+.++++ +...+++.+..+|++...+ .. ..+++..+|++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~ 57 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPA-LEKELKRYGVGGVPTL 57 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChH-HhhHHHhCCCccccEE
Confidence 4789999999999999999999 4445789999999998876 44 38899999874
No 115
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.61 E-value=1.8e-07 Score=65.61 Aligned_cols=45 Identities=18% Similarity=0.503 Sum_probs=40.5
Q ss_pred CCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.++++||.||++ ||++|+...+.++++.++|+ .++.++.|+.+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 489999999999 99999999999999999994 4799999998654
No 116
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.60 E-value=1e-07 Score=60.44 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=40.1
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
+..||++||++|+.+.+.|++ .++.+..+|++.+++ ++.+.+++.++|++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~ 54 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVI 54 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEE
Confidence 567999999999999887764 357888899987754 15677999999985
No 117
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.60 E-value=1.8e-07 Score=67.47 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH 148 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~ 148 (162)
.+..+|+.||++||++|+..+|.|.++.+++. .++.++.|+.+....
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 34455555579999999999999999999994 469999999876543
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.59 E-value=9.4e-08 Score=61.64 Aligned_cols=49 Identities=29% Similarity=0.494 Sum_probs=37.4
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH-----cCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR-----AGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~-----~~I~~~Pti 162 (162)
++.||++||++|+.+.+.|+++. +.+-.+|+++..+ ..+. +++.++|+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i 55 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEG-AADRVVSVNNGNMTVPTV 55 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHh-HHHHHHHHhCCCceeCEE
Confidence 56899999999999998886553 3445688887765 4544 389999975
No 119
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.6e-08 Score=74.30 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=65.5
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
.+-.+..+.+++.+.+ ++...++|.|+|.|.+.|+...|.+.+|+.+|. +..+|++||+...++ .+++|+|...|.
T Consensus 126 ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s~~ 202 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLSPG 202 (265)
T ss_pred eeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccCcc
Confidence 4445566777888765 788899999999999999999999999999994 579999999999999 999999976653
No 120
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.53 E-value=3.9e-07 Score=64.86 Aligned_cols=76 Identities=17% Similarity=0.396 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEec-------CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----hH-HHHH-
Q 031285 87 GSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----PH-KLVA- 152 (162)
Q Consensus 87 ~~~~~f~~~l~~~~~~~~~vlV~F~a-------~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----~~-~la~- 152 (162)
.+.++|.+.+.....++++++|.|++ +||+.|+...|.+++..+....+..++.|.+..- ++ ..-.
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 45677888886544677999999996 5999999999999998888656799998987322 11 1333
Q ss_pred -HcCCcccccC
Q 031285 153 -RAGVMVSLMI 162 (162)
Q Consensus 153 -~~~I~~~Pti 162 (162)
+++|.++||+
T Consensus 83 p~~~l~~IPTL 93 (119)
T PF06110_consen 83 PDLKLKGIPTL 93 (119)
T ss_dssp -CC---SSSEE
T ss_pred ceeeeeecceE
Confidence 5999999985
No 121
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.51 E-value=1.7e-07 Score=61.46 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=42.4
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH----HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~la~~~~I~~~Pti 162 (162)
|+.|+++||++|+.+.+.|+++. ..+.+.++.+|.+.+.. .+.+.+++..+|++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v 58 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI 58 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 46799999999999999999877 33457888888876542 25666799999975
No 122
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.50 E-value=3.2e-07 Score=65.94 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=39.3
Q ss_pred CCCeEEEEEecCCChh-hhhhhHhHHHHHHHhCC----CeEEEEEECCC
Q 031285 102 LDESVIIVWMASWCRK-CIYLKPKLEKLAADYHP----RLRFYNVDVNA 145 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~ 145 (162)
.++++||.||++||++ |....+.+.++.++++. ++.++.|+.|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5899999999999998 99999999999999943 49999998864
No 123
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.49 E-value=2.3e-07 Score=70.73 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=38.1
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
..|+++||.|||+||++|+ ..|.|+++.++|++ ++.++.+.++
T Consensus 23 ~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 23 YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999997 58999999999954 6999999885
No 124
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.49 E-value=2.3e-07 Score=68.66 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=38.7
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC---eEEEEEECCCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR---LRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~ 146 (162)
-.||.|.++|.|.||+|||.+-|.+.++.++.+.. +.++-|+-|..
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 36899999999999999999999999999998544 77777776543
No 125
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.47 E-value=2.5e-07 Score=70.48 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=71.5
Q ss_pred CCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158 (162)
Q Consensus 79 ~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~ 158 (162)
......+|.++.+|-+.. .+...||+.||-+--..|+.+...|+.|++.| -+.+|++||++..|- ++.+++|+.
T Consensus 64 GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~PF-lv~kL~IkV 137 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAPF-LVTKLNIKV 137 (211)
T ss_pred CCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCce-eeeeeeeeE
Confidence 344688898999998888 67888999999999999999999999999999 889999999999999 999999999
Q ss_pred cccC
Q 031285 159 SLMI 162 (162)
Q Consensus 159 ~Pti 162 (162)
+|++
T Consensus 138 LP~v 141 (211)
T KOG1672|consen 138 LPTV 141 (211)
T ss_pred eeeE
Confidence 9985
No 126
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.40 E-value=7.3e-07 Score=64.65 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=37.6
Q ss_pred CeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 104 ESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 104 ~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
++++|.|| ++||+.|....|.++++.++++ .++.++.|+.+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~ 73 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP 73 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 88888888 9999999999999999999994 4699999987653
No 127
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.37 E-value=8.4e-07 Score=67.60 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=40.3
Q ss_pred cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
..|+++||+|| ++||++|...+|.|.++.++++ .++.++.|+.|..
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~ 76 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH 76 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH
Confidence 35889999999 9999999999999999999984 4688999887753
No 128
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.2e-06 Score=60.57 Aligned_cols=74 Identities=15% Similarity=0.440 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEec--------CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-------HHHH
Q 031285 87 GSESQFDRVIAEAQQLDESVIIVWMA--------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-------HKLV 151 (162)
Q Consensus 87 ~~~~~f~~~l~~~~~~~~~vlV~F~a--------~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~la 151 (162)
...++|++.+..- .+++-++|.|++ +||+.|.+..|.+.+..+....++.|+.+++..-+ . +-
T Consensus 10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~-FR 87 (128)
T KOG3425|consen 10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP-FR 87 (128)
T ss_pred chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc-cc
Confidence 4567888888664 567779999997 79999999999999988876678999999985332 2 44
Q ss_pred HHcCC-cccccC
Q 031285 152 ARAGV-MVSLMI 162 (162)
Q Consensus 152 ~~~~I-~~~Pti 162 (162)
...++ .++||+
T Consensus 88 ~d~~~lt~vPTL 99 (128)
T KOG3425|consen 88 KDPGILTAVPTL 99 (128)
T ss_pred cCCCceeeccee
Confidence 55666 777774
No 129
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.31 E-value=1.2e-06 Score=65.60 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.|+++||+|| ++||++|....+.|+++.++|. .++.++.|+.|..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 4799999999 8999999999999999999994 4689999988754
No 130
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.31 E-value=1.6e-06 Score=62.16 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=39.1
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.|++++|+|| +.||+.|....+.+.++.+++. .++.++.|..+..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4899999999 5899999999999999999984 4689999987654
No 131
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.30 E-value=1.1e-06 Score=65.72 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCeEEEEEecCCChhhhhhhH-hH--HHHHHHhCCCeEEEEEECCCChHHHHHHc--------CCccccc
Q 031285 94 RVIAEAQQLDESVIIVWMASWCRKCIYLKP-KL--EKLAADYHPRLRFYNVDVNAVPHKLVARA--------GVMVSLM 161 (162)
Q Consensus 94 ~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p-~l--~~l~~~~~~~v~~~~vd~d~~~~~la~~~--------~I~~~Pt 161 (162)
+.+..|++.+|+++|+++.+||+.|+.|.- .| .++++.+...+.-++||.++.++ +...| |.-+.|+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCc
Confidence 444444588999999999999999998874 34 35666654568999999999999 88877 6777775
No 132
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.29 E-value=3.7e-06 Score=65.67 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=50.9
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----------ChHHHHHHcCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~la~~~~I~~~Pti 162 (162)
-.++.-|+.||.+.|+.|..+.|.++.++++| ++.++.|++|. +.+ +++++||..+|++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g-~~~~l~v~~~Pal 187 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPG-QAKRLGVKVTPAL 187 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHH-HHHHcCCCcCCEE
Confidence 45888899999999999999999999999999 66777777763 356 8999999999975
No 133
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.28 E-value=2e-06 Score=61.50 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCC
Q 031285 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~ 146 (162)
.+++++|.|| +.||+.|....|.+.++.+++ ..++.|+.|..+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 5899999999 789999999999999999998 35699999988643
No 134
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.19 E-value=3e-06 Score=62.07 Aligned_cols=45 Identities=7% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
+++++||+||++ ||+.|....+.+.++.++++ .++.++.|+.|..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 588999999986 67789999999999999984 4699999988654
No 135
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.18 E-value=3.9e-06 Score=55.73 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=44.8
Q ss_pred EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcC--CcccccC
Q 031285 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAG--VMVSLMI 162 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~--I~~~Pti 162 (162)
-|+.|+.+||+.|++....|+++.+++ .++.+..+|++... +++.+..+ +..+|+|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i 62 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI 62 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE
Confidence 467899999999999999999999887 68888899998753 22555555 4788875
No 136
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.12 E-value=1.2e-05 Score=58.23 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEEec--CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMA--SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a--~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+++..+ ......++.|-. --++-+-...-.+++++++|. .+++|++||+|.+++ ++.+|||+++||+
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTL 95 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPAT 95 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEE
Confidence 5677777 455555555543 256677778888999999995 359999999999999 9999999999985
No 137
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.11 E-value=6.7e-06 Score=64.18 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCCe-EEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285 102 LDES-VIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP 147 (162)
Q Consensus 102 ~~~~-vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~ 147 (162)
.|++ +|+.||++||++|..+++.|.++.++++ .++.++.|++|...
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~ 74 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF 74 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 4666 4679999999999999999999999994 47999999998753
No 138
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.1e-06 Score=66.80 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=62.0
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
++.+...+.| .. .+++..++.||++||.+|..+...++.+++.. .++.+++++.+..++ ++..+.+..+|.
T Consensus 3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~ 73 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPY 73 (227)
T ss_pred ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCce
Confidence 4455555666 33 57999999999999999999999999999998 889999999999999 999999999886
No 139
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.06 E-value=2.7e-07 Score=72.12 Aligned_cols=68 Identities=28% Similarity=0.438 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.+++.+.+ ..-+++.|+|+||+.|+...|+|+.++.-- +-++.+.+||+..++. +.-+|-+..+|+|
T Consensus 30 ~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLptI 98 (248)
T KOG0913|consen 30 DEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPTI 98 (248)
T ss_pred cccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecceE
Confidence 667888888 455789999999999999999999988765 2369999999999999 9999999999987
No 140
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.05 E-value=1.1e-05 Score=50.91 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=35.7
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHc----CCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA----GVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~----~I~~~Pti 162 (162)
++.|+++||++|+.+...+++ .++.+..+|++...+ ..+.+ ++..+|+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~------~~i~~~~~~i~~~~~-~~~~~~~~~~~~~vP~i 54 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE------RGIPFEEVDVDEDPE-ALEELKKLNGYRSVPVV 54 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH------CCCCeEEEeCCCCHH-HHHHHHHHcCCcccCEE
Confidence 567999999999998777664 246677788877654 34433 68888875
No 141
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.04 E-value=1.1e-05 Score=62.29 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=38.2
Q ss_pred CCCeEEE-EEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVII-VWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV-~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.|+.+|+ .||++||+.|..+.+.|.++.++++ .++.++.|++|..
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~ 72 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI 72 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 4676655 6899999999999999999999994 4699999998864
No 142
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.03 E-value=1.1e-05 Score=61.75 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=40.5
Q ss_pred cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
..|+++|+.|| ++||+.|..+.+.|.++.+++. .++.++.|+.|..
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~ 76 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTH 76 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCH
Confidence 35889999999 9999999999999999999994 4688999988754
No 143
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.02 E-value=5.3e-06 Score=66.75 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=60.0
Q ss_pred CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285 80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS 159 (162)
Q Consensus 80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~ 159 (162)
...+.++.+.+.|.+.+... ..+..|||+||-+.+..|..+...|..|+.+| +.++|++|.....+ +..+|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCC
Confidence 34567888888888888432 34568999999999999999999999999999 89999999998764 4788999999
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
|+|
T Consensus 200 Ptl 202 (265)
T PF02114_consen 200 PTL 202 (265)
T ss_dssp SEE
T ss_pred CEE
Confidence 985
No 144
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.00 E-value=1.3e-05 Score=61.76 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=36.4
Q ss_pred eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 105 SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.+|+.||++||+.|....+.|.++.++++ .++.++.|++|..
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~ 70 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV 70 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 45668999999999999999999999994 4699999998753
No 145
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.00 E-value=6.5e-06 Score=59.37 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=39.6
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH---cCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR---AGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~---~~I~~~Pti 162 (162)
...+..++.|..+|||.|+...|.|.++++.. +++.+-.+..|++++ +..+ .|..++|++
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~ 101 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTF 101 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEE
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEE
Confidence 34556777799999999999999999999997 677777777777776 5544 467888864
No 146
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.96 E-value=2e-05 Score=61.49 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=38.9
Q ss_pred CCCeEE-EEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285 102 LDESVI-IVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP 147 (162)
Q Consensus 102 ~~~~vl-V~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~ 147 (162)
.|+++| +.||++||+.|..+.+.|.+++++++ .+++++.|++|...
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~ 79 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI 79 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 466555 48899999999999999999999994 56999999998654
No 147
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.96 E-value=3.6e-05 Score=61.60 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=50.2
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----------hHHHHHHcCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----------PHKLVARAGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~la~~~~I~~~Pti 162 (162)
-.++.-||.||.+-|+.|..+.|.++.++++| ++.++.|++|.. .. +++++||..+|++
T Consensus 148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~g-qa~~l~v~~~Pal 217 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSG-QAQHLGVKYFPAL 217 (256)
T ss_pred HHhceeEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChH-HHHhcCCccCceE
Confidence 34668899999999999999999999999999 577777777655 44 7999999999974
No 148
>PRK15000 peroxidase; Provisional
Probab=97.96 E-value=1.8e-05 Score=61.08 Aligned_cols=45 Identities=7% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCCeEEEEEec-CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.|+++|+.||+ .||+.|..+.+.|.++.++++ .++.++.|++|..
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 68999999998 599999999999999999994 4699999999854
No 149
>PRK13189 peroxiredoxin; Provisional
Probab=97.94 E-value=2.1e-05 Score=61.65 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCC-eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285 102 LDE-SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP 147 (162)
Q Consensus 102 ~~~-~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~ 147 (162)
.|+ .+|+.||++||+.|..+.+.|.+++++++ .+++++.|++|...
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 466 45568889999999999999999999994 56999999988653
No 150
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.92 E-value=3.6e-05 Score=54.46 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEecC----CChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~----WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~~~Pti 162 (162)
.|++.+..+++++|.++|++|++ ||..|+..... +++.+-...++.+++.|++... -.++..+++.++|++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 57788888889999999999999 99999766511 2333333446899999998654 238999999999974
No 151
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.89 E-value=1.9e-05 Score=51.47 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=39.4
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH----HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~la~~~~I~~~Pti 162 (162)
|+.|+++||+.|+.+...|+++.. .+.++.++.+.... .+.+..|+.++|.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 577999999999999988887665 45788888876631 25556788888864
No 152
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.86 E-value=4.1e-05 Score=49.91 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=39.7
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+++++|+.|..+...++++++++ + +.+-.+|+...++ + .+|||.++|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~-~-~~ygv~~vPal 53 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEE-I-EKYGVMSVPAL 53 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHH-H-HHTT-SSSSEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHH-H-HHcCCCCCCEE
Confidence 336888999999999999999998 3 6666677755555 6 99999999985
No 153
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.78 E-value=4.9e-05 Score=61.06 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=38.7
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.++.+|+.|| ++||++|..+.+.|.++.++++ .++.++.|++|..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 5677777777 9999999999999999999994 4689999998874
No 154
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.78 E-value=4.3e-05 Score=51.04 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=41.7
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCC--cccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGV--MVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I--~~~Pti 162 (162)
|+.|..+||+.|.+....|+++..++ +++.+..+|++... +++.+..+- ..+|.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i 61 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI 61 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE
Confidence 56789999999999999998887765 56778888887543 226666664 788864
No 155
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.74 E-value=0.00024 Score=49.45 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=51.3
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMV 158 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~ 158 (162)
++.+++.+++++++.. +..++++|.=+++.|+-.......|++..++..+++.++.+|+-+..+ .+|++|||..
T Consensus 1 w~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H 77 (105)
T PF11009_consen 1 WKPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH 77 (105)
T ss_dssp --E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred CCccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence 3567889999999965 679999998899999999999999999999985569999999977642 3899999863
No 156
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.70 E-value=0.00016 Score=57.65 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----------ChHHHHHHcCCcccccC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~la~~~~I~~~Pti 162 (162)
.++.-|+.||.+-|+.|..+.|.++.++++| ++.++.|++|. +.. .++++||..+|++
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y--g~~v~~VS~DG~~~p~fp~~~~d~g-qa~~l~v~~~PAl 210 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY--GLSVIPVSVDGVINPLLPDSRTDQG-QAQRLGVKYFPAL 210 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCCccChh-HHHhcCCcccceE
Confidence 4668899999999999999999999999999 45565566553 223 6789999999974
No 157
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=0.0002 Score=51.19 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=66.0
Q ss_pred ecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 85 ~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+.+.+..++.+.. ...+.|+|-|.-.|-+.|..+...|.++++....-..++-+|+++.++ +.+-|++...|++
T Consensus 7 ~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~tv 81 (142)
T KOG3414|consen 7 TLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPTV 81 (142)
T ss_pred ccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCceE
Confidence 45577888888876 789999999999999999999999999999996668889999999998 9999999888864
No 158
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.67 E-value=0.0001 Score=46.00 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=37.0
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
++.|+++||+.|+.+...|++.. +.+..+|++.+.+ .+.+..+...+|++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~ 54 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQI 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 56789999999999987777543 6677888887754 24455677788864
No 159
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.61 E-value=0.00013 Score=45.02 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=37.2
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
|+.|+.+||+.|+.....| +++ ++.+-.+|++..++ ++.+..|...+|+|
T Consensus 1 V~vy~~~~C~~C~~~~~~L----~~~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v 53 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL----DEK--GIPYEEVDVDEDEEAREELKELSGVRTVPQV 53 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH----HHT--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEE
T ss_pred cEEEEcCCCcCHHHHHHHH----HHc--CCeeeEcccccchhHHHHHHHHcCCCccCEE
Confidence 5679999999999987666 343 57788888887743 24445599999975
No 160
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.57 E-value=0.00084 Score=48.35 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=61.2
Q ss_pred eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL 160 (162)
Q Consensus 84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P 160 (162)
..+.+....++.+.. ...+.++|-|.-+|-+.|.++...|.+++++.+.-..++.+|+++.++ +-+-|.+. .|
T Consensus 3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~-dP 75 (133)
T PF02966_consen 3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELY-DP 75 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS--SS
T ss_pred cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccC-CC
Confidence 345678889999887 789999999999999999999999999999996668999999999998 88888876 44
No 161
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.56 E-value=0.00017 Score=55.31 Aligned_cols=46 Identities=4% Similarity=0.079 Sum_probs=39.9
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP 147 (162)
Q Consensus 102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~ 147 (162)
.|+.++|.|| +.||+.|....+.|.++.+++. .++.++.|++|...
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 4889999999 4899999999999999999994 47999999988654
No 162
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.50 E-value=0.00038 Score=61.33 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=51.6
Q ss_pred CCCeE-EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~v-lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
-++++ +-.|.++||+.|......+++++.+. +++..-.+|+...++ ++++|+|.++|++
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~ 533 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAI 533 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEE
Confidence 34555 44567999999999999999999997 789999999999999 9999999999985
No 163
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.46 E-value=0.00043 Score=60.39 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..-+-.|.+++|+.|......+++++.+. +.+.+-.+|....++ ++++|+|.++|++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~ 173 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTV 173 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEE
Confidence 444578899999999999999999999986 789999999999999 9999999999974
No 164
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.41 E-value=0.00014 Score=47.60 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=37.8
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccccC
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSLMI 162 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~Pti 162 (162)
.+.-|+.|+.+||+.|++..-.|+ ++ ++.+..+|++...+ .+.+..|...+|.|
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~----~~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i 61 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLK----EK--GYDFEEIPLGNDARGRSLRAVTGATTVPQV 61 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHH----Hc--CCCcEEEECCCChHHHHHHHHHCCCCcCeE
Confidence 444567799999999999887775 33 45566677766532 25556788999874
No 165
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.39 E-value=0.00043 Score=49.72 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=35.1
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 143 (162)
..++++|+.|+.++|++|+.+.|.++++..++ +++.++..+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 44 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEF 44 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeC
Confidence 35788999999999999999999999988887 5666665554
No 166
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.36 E-value=0.00044 Score=44.31 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=35.5
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH---cCCcccccC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR---AGVMVSLMI 162 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~---~~I~~~Pti 162 (162)
..|..+||+.|+.....|++ .++.+-.+|++++++ ..+. .|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEE
Confidence 46789999999998877753 356777788888765 4443 488888864
No 167
>PHA03050 glutaredoxin; Provisional
Probab=97.34 E-value=0.00054 Score=47.87 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-Ch---HHHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-VP---HKLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~---~~la~~~~I~~~Pti 162 (162)
|+.|..+|||.|++....|+++.-++ +.+..+.||-.. .. +.+.+.-|...+|.|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I 73 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI 73 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence 56689999999999987776655433 234444444311 21 225566788888875
No 168
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.28 E-value=0.00069 Score=44.43 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=30.1
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 143 (162)
|+.|+.++|+.|..+.+.++++.+...+++.+....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4679999999999999999999866666776665544
No 169
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.28 E-value=0.00048 Score=44.72 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=35.0
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
|+.|+.+||+.|......|++ + ++.+-.+|++.+++ ++.+..|...+|+|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~----~--~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS----K--GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH----c--CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 356889999999999877764 3 35556667776654 14444578888875
No 170
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.12 E-value=0.0015 Score=41.67 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=34.8
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH---HHHHcCCc-ccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK---LVARAGVM-VSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~---la~~~~I~-~~Pti 162 (162)
|+.|+.+||+.|......|++ + ++.+-.+|++.+++. +.+..+.. .+|.|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~----~--~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v 55 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK----K--GVDYEEIDVDGDPALREEMINRSGGRRTVPQI 55 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH----C--CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE
Confidence 567889999999998866654 3 466667788776541 33445766 78864
No 171
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.08 E-value=0.0018 Score=42.73 Aligned_cols=50 Identities=20% Similarity=0.380 Sum_probs=36.3
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH--HHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK--LVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~--la~~~~I~~~Pti 162 (162)
+..|..+||+.|....-.|+ + .++.|-.+|++..++. ..+..|...+|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~----~--~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv 54 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME----S--RGFDFEMINVDRVPEAAETLRAQGFRQLPVV 54 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH----H--CCCceEEEECCCCHHHHHHHHHcCCCCcCEE
Confidence 56788999999999876664 2 3678888899887752 1234577788864
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.94 E-value=0.0031 Score=55.04 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..-+-.|.++.|+.|......+++++.+. +.+..-.+|....++ ++++|+|.++|++
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~ 174 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAV 174 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEE
Confidence 445578899999999999999999999997 789999999999999 9999999999974
No 173
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.89 E-value=0.0051 Score=45.56 Aligned_cols=74 Identities=16% Similarity=0.333 Sum_probs=60.8
Q ss_pred ceecCCHHHHHHHHHHHhcCCCe-EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc--cc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDES-VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--VS 159 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~-vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~--~~ 159 (162)
+..+ +.+++..+. ..+.+ +++.|...-..........++.+++++.+++.|+.+|.+..+. +++.+|+. .+
T Consensus 79 v~~~-t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~ 152 (184)
T PF13848_consen 79 VPEL-TPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDL 152 (184)
T ss_dssp CEEE-STTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSS
T ss_pred cccc-chhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccC
Confidence 3344 456888888 67766 7777777777888889999999999998889999999998888 99999998 78
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
|.+
T Consensus 153 P~~ 155 (184)
T PF13848_consen 153 PAL 155 (184)
T ss_dssp SEE
T ss_pred CEE
Confidence 864
No 174
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.85 E-value=0.0013 Score=45.05 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=30.9
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--H----HHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--K----LVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~----la~~~~I~~~Pti 162 (162)
|+.|..+||+.|++....|++ + ++.+..+|++..++ + +.+..|...+|.|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~----~--~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V 65 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT----L--GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV 65 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE
Confidence 556899999999998765554 3 23334555554432 1 3333467788864
No 175
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.76 E-value=0.0048 Score=39.42 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
++.|..+||+.|++..-.|++ + ++.+..+|++..++ ++.+..+-..+|.|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----~--gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----K--GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 566889999999998866663 3 46666778887654 25555577777764
No 176
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.72 E-value=0.0017 Score=41.36 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=34.9
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~Pti 162 (162)
|+.|..+||+.|.+....|++ + ++.+..+|++.+.+ .+.+..|...+|.|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i 54 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQV 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeE
Confidence 567889999999998766653 3 45666677766542 14444688888864
No 177
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.71 E-value=0.0072 Score=44.61 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCChhhhhh-hHhHHHHHHHhC-CCe-EEEEEECCCCh--HHHHHHcCC-cccc
Q 031285 103 DESVIIVWMASWCRKCIYL-KPKLEKLAADYH-PRL-RFYNVDVNAVP--HKLVARAGV-MVSL 160 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~-~p~l~~l~~~~~-~~v-~~~~vd~d~~~--~~la~~~~I-~~~P 160 (162)
+..+|+.|.+.||+.|... .+.|.+..+++. .++ .++.|..|... ..+++++++ ..+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 3444555559999999999 999999999983 456 58888877543 226667776 2444
No 178
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0077 Score=44.85 Aligned_cols=62 Identities=15% Similarity=0.310 Sum_probs=48.5
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCC---------------hHHHHHHcCCcccccC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAV---------------PHKLVARAGVMVSLMI 162 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~---------------~~~la~~~~I~~~Pti 162 (162)
-.++..+++|-++.|..|-.+...+ +++.+-+.+.+.++.+|+... .+++|+.|+|+++|++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 6789999999999999999888665 455555666688888886311 1239999999999985
No 179
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.66 E-value=0.0034 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.7
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHH
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEK 127 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~ 127 (162)
..++..|+.|..+.|++|+++.+.+.+
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 347889999999999999999988876
No 180
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.60 E-value=0.011 Score=40.28 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEe----cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~----a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
..++.+ ++ .+|+|+-. ++||+.|++....|++ + ++.+..+|++.+++ .+.+..|...+|.|
T Consensus 4 ~v~~~i----~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~----~--~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v 71 (97)
T TIGR00365 4 RIKEQI----KE-NPVVLYMKGTPQFPQCGFSARAVQILKA----C--GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL 71 (97)
T ss_pred HHHHHh----cc-CCEEEEEccCCCCCCCchHHHHHHHHHH----c--CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 345555 44 45555444 3899999998766654 3 35666788877654 14445566777764
No 181
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.52 E-value=0.0046 Score=45.69 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=36.4
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 143 (162)
.+++.|+.|+...|++|+.+.+.+.++.+++.+++.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 578899999999999999999999999999866777765554
No 182
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.51 E-value=0.01 Score=43.06 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=39.9
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCCh
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVP 147 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~ 147 (162)
...+++|+.|+..-|++|+.+.+.+.++.+++ .+++.|+..++....
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK 58 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence 45788999999999999999999999999999 678999988885443
No 183
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.49 E-value=0.0063 Score=40.79 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=34.0
Q ss_pred CCeEEEEEec----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 103 DESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 103 ~~~vlV~F~a----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
+.+|+|.-.+ +||+.|+.....|++. ++.+-.+|++..++ .+.+..|-..+|.|
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 4455553332 7999999987666543 35666677766654 14445677788864
No 184
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.45 E-value=0.0047 Score=40.61 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=42.6
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
|+.|..+.|+-|......++++..+. .+.+-.||++.+++ +.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcC-CCCE
Confidence 67889999999999998888876664 58999999999988 9999996 5664
No 185
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0081 Score=39.55 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=34.6
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh----HHHHHHc-CCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----HKLVARA-GVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~la~~~-~I~~~Pti 162 (162)
++.|.-+||+.|++....|+ + .++.+..+|++... .+..++. |.+.+|.|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~----~--~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I 57 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD----R--KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQI 57 (80)
T ss_pred EEEEECCCCchHHHHHHHHH----H--cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEE
Confidence 56688999999999876665 3 35666666666554 2255555 78999875
No 186
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.26 E-value=0.01 Score=46.81 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.5
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHH
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAA 130 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~ 130 (162)
.+++.+|+.|.-+.||.|+++.+.++++.+
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 457888999999999999999988887653
No 187
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.16 E-value=0.046 Score=36.39 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=48.5
Q ss_pred eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158 (162)
Q Consensus 84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~ 158 (162)
+.+++.+.++..+ ....+++|-|+.+++++ ....|.++++.+.+.+.|+.++ +.+ +++++++..
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~~~~F~~~~---~~~-~~~~~~~~~ 65 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEESE---EYKTFEKVAESLRDDYGFGHTS---DKE-VAKKLKVKP 65 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCcH---HHHHHHHHHHhcccCCeEEEEC---hHH-HHHHcCCCC
Confidence 4566778888877 78999999999999984 5678889999886678887665 334 666666643
No 188
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.025 Score=42.13 Aligned_cols=57 Identities=9% Similarity=0.236 Sum_probs=44.9
Q ss_pred cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh--HHHHHHcCCc
Q 031285 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--HKLVARAGVM 157 (162)
Q Consensus 101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~--~~la~~~~I~ 157 (162)
..|++||++|| ..|++.|-.+.-.|.....+++ -++.++.|..|... ..+++++++.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 56889999999 8899999999999999999984 36899999886543 1255555554
No 189
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.029 Score=38.93 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHc----CCccccc
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA----GVMVSLM 161 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~----~I~~~Pt 161 (162)
...+.+ ...+|| .|.-+||+.|+++.-.|.. ++...+++.+|-+.+..++.+.+ +-+.+|.
T Consensus 6 ~v~~~i-----~~~~VV-ifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 6 KVRKMI-----SENPVV-IFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPN 70 (104)
T ss_pred HHHHHh-----hcCCEE-EEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCE
Confidence 345555 344444 4899999999997655544 65677888888887664344433 3455664
No 190
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.87 E-value=0.013 Score=45.18 Aligned_cols=42 Identities=10% Similarity=0.346 Sum_probs=35.5
Q ss_pred CCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECC
Q 031285 103 DESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVN 144 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d 144 (162)
+++.||.|+.-.|++|+.+.+.+ +.+.+.+.+++.++.+.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 56789999999999999999876 7888888778888776653
No 191
>PRK10824 glutaredoxin-4; Provisional
Probab=95.84 E-value=0.037 Score=39.14 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEEec----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
+..++.+ ++ .+|+|.-.+ |||+.|++....|.++. +.+..+|++.+++ .+.+.-|...+|.|
T Consensus 6 ~~v~~~I----~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 6 EKIQRQI----AE-NPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHHH----hc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 3455566 44 445554443 69999999886665542 3344456666654 13333455666643
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=95.80 E-value=0.0079 Score=39.48 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=34.5
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
++.|..+||+.|+...-.|++. ++.+..+|++...+ ++.+..+...+|.|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 5567789999999988666642 45555677776653 24555677788864
No 193
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.75 E-value=0.04 Score=48.63 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
...+.+.+.. -.+.+.|+.|+.+-|..|..+...++++++.. +++.+...|...+.+ ++++|+|+..|++
T Consensus 354 ~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~-~~~~~~v~~~P~~ 423 (555)
T TIGR03143 354 RQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPE-SETLPKITKLPTV 423 (555)
T ss_pred HHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchh-hHhhcCCCcCCEE
Confidence 3456677753 45666788899999999999999999999665 889998889888877 9999999999975
No 194
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.59 E-value=0.05 Score=37.94 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHH---hCCCeEEEEEECCCChHHHHHHcCCcc--cccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD---YHPRLRFYNVDVNAVPHKLVARAGVMV--SLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~la~~~~I~~--~Pti 162 (162)
++..... ..+.+..+.|| --..-..+...+.+++++ +.+++.|+.+|.+.... .++.||+.. +|.+
T Consensus 7 e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i 77 (111)
T cd03072 7 ENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVI 77 (111)
T ss_pred ccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEE
Confidence 4455666 66777776777 222336778899999999 98889999999999887 899999987 7764
No 195
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.56 E-value=0.028 Score=44.80 Aligned_cols=39 Identities=8% Similarity=0.226 Sum_probs=29.2
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEE
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV 141 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~v 141 (162)
.+++.+|+.|.-+.|+.|+++.+.+.++.+. +++.+..+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~i 153 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHI 153 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEE
Confidence 3567789999999999999999888776553 34554444
No 196
>PTZ00062 glutaredoxin; Provisional
Probab=95.44 E-value=0.061 Score=41.73 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEe----cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~----a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti 162 (162)
.+++++ ++ .+|+|... .|||+.|++....|++ + ++.+..+|+++..+ .+.+.-|...+|.|
T Consensus 105 ~v~~li----~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~----~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV 172 (204)
T PTZ00062 105 KIERLI----RN-HKILLFMKGSKTFPFCRFSNAVVNMLNS----S--GVKYETYNIFEDPDLREELKVYSNWPTYPQL 172 (204)
T ss_pred HHHHHH----hc-CCEEEEEccCCCCCCChhHHHHHHHHHH----c--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE
Confidence 345555 44 44455333 3799999998766653 2 46666788877654 13333466666653
No 197
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.05 E-value=0.035 Score=43.94 Aligned_cols=64 Identities=9% Similarity=0.218 Sum_probs=50.3
Q ss_pred CCCCcCceecCCHH--HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285 77 APVSIPLTPIGSES--QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144 (162)
Q Consensus 77 ~~~~~~~~~i~~~~--~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 144 (162)
.+++..+..+++.. .+-+.. +.++|+|++|.+-.|++-+.-...|++++++|.+.+.|+.|-+.
T Consensus 78 ~APns~vv~l~g~~~~~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 78 PAPNSPVVTLDGQRSCRILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred CCCCCceEeeCCCcceeHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence 35566677776443 455666 78999999999999999999999999999999666667766553
No 198
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.041 Score=49.37 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCChHHHHHHc
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPHKLVARA 154 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~la~~~ 154 (162)
+.+.|...- ..+||+++....+||..|..|... | .++++-+...+.-+|||.++-|+ +-+-|
T Consensus 32 ~~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPD-vD~~Y 96 (667)
T COG1331 32 GEEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPD-VDSLY 96 (667)
T ss_pred CHHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccC-HHHHH
Confidence 445555555 889999999999999999987643 2 35666665668999999999887 55544
No 199
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.78 E-value=0.18 Score=32.65 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=45.2
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..|-+.--+..+.....+.++.+++ ++.+.+--||+.++++ +|+.++|-.+||+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtL 59 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIVATPTL 59 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEEechh
Confidence 44455555577777788888888887 5679999999999999 9999999999985
No 200
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.62 E-value=0.37 Score=34.54 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=55.4
Q ss_pred CceecCCHHHHHHHHHHHhcCCCeEEEEEecC--CChh-h-hhhhHhHHHHHHHhCCC-eEEEEEECCCChHHHHHHcCC
Q 031285 82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMAS--WCRK-C-IYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAGV 156 (162)
Q Consensus 82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~--WC~~-C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~la~~~~I 156 (162)
++.++++.+.+++.= ..++.-+|-|.-. -|.+ + ......+.+++++|.++ +.|+.+|.+.... +.+.|||
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence 466677777777665 4456666666421 1222 3 35678899999999888 9999999999988 9999999
Q ss_pred cc--cccC
Q 031285 157 MV--SLMI 162 (162)
Q Consensus 157 ~~--~Pti 162 (162)
.. +|++
T Consensus 78 ~~~~~P~v 85 (130)
T cd02983 78 GGFGYPAM 85 (130)
T ss_pred CccCCCEE
Confidence 54 7864
No 201
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.076 Score=43.61 Aligned_cols=77 Identities=16% Similarity=0.380 Sum_probs=61.9
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecC----CChhhhhhhHhHHHHHHHh---C---C--CeEEEEEECCCChHHH
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADY---H---P--RLRFYNVDVNAVPHKL 150 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~----WC~~C~~~~p~l~~l~~~~---~---~--~v~~~~vd~d~~~~~l 150 (162)
+..+ +.+.|...+... -.+--++|+|.|. .|.-|+.+...++-++..+ . + ++=|..||.++.++ +
T Consensus 42 VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~ 118 (331)
T KOG2603|consen 42 VIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-V 118 (331)
T ss_pred eEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-H
Confidence 4444 446788888643 5677789999974 7999999999999998776 1 2 57789999999999 9
Q ss_pred HHHcCCcccccC
Q 031285 151 VARAGVMVSLMI 162 (162)
Q Consensus 151 a~~~~I~~~Pti 162 (162)
.+.+++..+|++
T Consensus 119 Fq~l~ln~~P~l 130 (331)
T KOG2603|consen 119 FQQLNLNNVPHL 130 (331)
T ss_pred HHHhcccCCCeE
Confidence 999999999975
No 202
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.47 E-value=0.14 Score=39.76 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=51.6
Q ss_pred CCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285 79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (162)
Q Consensus 79 ~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (162)
.-.++.+|...+...++ ..| ..+-.|||..|...-+.|+-+...|+.++..| +.++|+++-...
T Consensus 89 kfG~V~~ISg~dyv~EV-T~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~ 152 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEV-TKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATT 152 (240)
T ss_pred cccceeeccchHHHHHH-Hhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEeccccc
Confidence 34467778665544444 444 78999999999999999999999999999999 999999986543
No 203
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.17 E-value=0.27 Score=33.01 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=48.7
Q ss_pred CeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 104 ESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
..++=.|.|.--+..+.....+.++.+++ ++.+.+--||+.++|+ +|+.++|-.+||+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtL 61 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTL 61 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHH
Confidence 34556677888888888888888988877 5568888999999999 9999999999984
No 204
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.02 E-value=0.28 Score=33.96 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++..++=.|.|.--+..+.....+.++.+++ .+.+.+--||+.++|+ +|+.++|-.+||+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTL 64 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTL 64 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHH
Confidence 3456777778888888888888999988877 5568888999999999 9999999999984
No 205
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=93.94 E-value=0.16 Score=35.41 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=38.5
Q ss_pred hhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCcc----cccC
Q 031285 116 RKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMV----SLMI 162 (162)
Q Consensus 116 ~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I~~----~Pti 162 (162)
..-......+.++++++. +++.|+.+|.+.... .++.||++. .|.+
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVV 81 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEE
Confidence 344567889999999998 699999999998877 889999985 7753
No 206
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.74 E-value=0.093 Score=33.02 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.|+.+||+.|++..-.+++. +-.+.++.+|......++.+......+|++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L 52 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVL 52 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEE
Confidence 357789999999876444433 234677777765443336666666777753
No 207
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.03 E-value=0.32 Score=38.16 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285 78 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (162)
Q Consensus 78 ~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~ 157 (162)
|.-.-+.++++...|.+.+... .+.-.++|..|-+.-..|-++...+.=|+.+| +.++|.++-...- . ...+|...
T Consensus 135 p~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~-g-as~~F~~n 210 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT-G-ASDRFSLN 210 (273)
T ss_pred CccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc-c-chhhhccc
Confidence 3344577888989999999642 25567889999999999999999999999999 9999999976654 3 47888888
Q ss_pred ccccC
Q 031285 158 VSLMI 162 (162)
Q Consensus 158 ~~Pti 162 (162)
++|++
T Consensus 211 ~lP~L 215 (273)
T KOG3171|consen 211 VLPTL 215 (273)
T ss_pred CCceE
Confidence 88874
No 208
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.01 E-value=0.14 Score=36.20 Aligned_cols=36 Identities=19% Similarity=0.539 Sum_probs=29.2
Q ss_pred CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143 (162)
Q Consensus 104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 143 (162)
|.++|.|.-|.|+-|......++++..+| .+..||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999988887777665 5666665
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.59 E-value=0.11 Score=44.44 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=16.6
Q ss_pred EEEEecCCChhhhhhhHhHHH
Q 031285 107 IIVWMASWCRKCIYLKPKLEK 127 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~ 127 (162)
|+.|..+||++|++....|++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 667899999999988655543
No 210
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=92.50 E-value=0.46 Score=39.78 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh------HHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCccc
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK------LEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVS 159 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~------l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~ 159 (162)
+..+|.+++ ++...++|+||.+-- .-+..... +-+|+.+. ..++.|+.||..+... +|+++|+...
T Consensus 40 neKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKLgv~E~ 113 (383)
T PF01216_consen 40 NEKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKLGVEEE 113 (383)
T ss_dssp -TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHHT--ST
T ss_pred chhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhcCcccc
Confidence 668999999 778888999998763 33333222 23444444 3579999999999988 9999999987
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
++|
T Consensus 114 ~Si 116 (383)
T PF01216_consen 114 GSI 116 (383)
T ss_dssp TEE
T ss_pred CcE
Confidence 764
No 211
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=91.62 E-value=0.16 Score=35.44 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=48.1
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhh---HhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLK---PKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS 159 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~---p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~ 159 (162)
+..++ .+++++.+ ..+...++ |++.-|..+.... -.+-+|.+.+++.+....++.+.... ++.+||+...
T Consensus 11 ~~~vd-~~~ld~~l----~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~-L~~r~gv~~~ 83 (107)
T PF07449_consen 11 WPRVD-ADTLDAFL----AAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERA-LAARFGVRRW 83 (107)
T ss_dssp EEEE--CCCHHHHH----HCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHH-HHHHHT-TSS
T ss_pred Ceeec-hhhHHHHH----hCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHH-HHHHhCCccC
Confidence 34443 46788888 45555554 5565555554433 46778888887778888888555555 9999999999
Q ss_pred ccC
Q 031285 160 LMI 162 (162)
Q Consensus 160 Pti 162 (162)
|++
T Consensus 84 PaL 86 (107)
T PF07449_consen 84 PAL 86 (107)
T ss_dssp SEE
T ss_pred CeE
Confidence 974
No 212
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=90.69 E-value=2.1 Score=29.68 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=50.1
Q ss_pred eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCc
Q 031285 84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVM 157 (162)
Q Consensus 84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~ 157 (162)
..|.+..+|..++ .....|+|.|..+-= .--.....+.+++++..+.-.++.||+.... ..||+++.|.
T Consensus 4 e~i~d~KdfKKLL----RTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~ 73 (112)
T cd03067 4 EDISDHKDFKKLL----RTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD 73 (112)
T ss_pred ccccchHHHHHHH----hhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence 4567888999999 446667776765432 3334455778888888788899999998743 2399999887
No 213
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=90.59 E-value=0.45 Score=35.78 Aligned_cols=33 Identities=24% Similarity=0.631 Sum_probs=25.6
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEE
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV 141 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~v 141 (162)
.|.-|+|+.|-...|.+.++.++|+.++.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 588999999999999999999999766655444
No 214
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.82 E-value=1.6 Score=32.67 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=35.5
Q ss_pred cCCCeEEEEEecCCC-hhhhhhhHhHHHHHHHh---CCCeEEEEEECCCC
Q 031285 101 QLDESVIIVWMASWC-RKCIYLKPKLEKLAADY---HPRLRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC-~~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~~ 146 (162)
-.|+++||.|.-+-| ..|-.....|.++.+++ +.++.++.|.+|-.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 469999999999999 57887777887777766 24688888888754
No 215
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.52 E-value=0.36 Score=32.91 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=21.4
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (162)
..|+.++|+.|+.....|++ . ++.+-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~----~--~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE----H--GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH----c--CCCcEEEeecc
Confidence 46889999999998655543 3 44455556544
No 216
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=89.49 E-value=0.45 Score=32.84 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=21.6
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
..|+.+||+.|++....|+ ++ ++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~----~~--~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE----AR--GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH----Hc--CCCeEEEecccC
Confidence 4688999999999764444 33 444445555443
No 217
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=89.25 E-value=0.29 Score=32.53 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=40.9
Q ss_pred cCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 112 ASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 112 a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.--.........++.+.+++ ++.+.+--||+.++++ +|+.++|-.+||+
T Consensus 5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtL 55 (82)
T PF07689_consen 5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIVATPTL 55 (82)
T ss_dssp SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEECHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCeeecceE
Confidence 344445567777888888886 5679999999999999 9999999999974
No 218
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=89.11 E-value=2.9 Score=29.97 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHH-HHh--CCCeEEEEEECC-----CChHHHHHHcCC--c
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADY--HPRLRFYNVDVN-----AVPHKLVARAGV--M 157 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~-~~~--~~~v~~~~vd~d-----~~~~~la~~~~I--~ 157 (162)
+.-+|+.++ .+.+.+||.|=... |-=.-.-.|.+++ +.+ .+++-++.|.+. .|.+ |+++|+| +
T Consensus 10 D~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~-Laery~i~ke 82 (126)
T PF07912_consen 10 DELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENME-LAERYKIDKE 82 (126)
T ss_dssp STTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHH-HHHHTT-SCC
T ss_pred cceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHH-HHHHhCCCcc
Confidence 345899999 78899999997655 4445566788999 555 356888888774 3445 9999999 5
Q ss_pred ccccC
Q 031285 158 VSLMI 162 (162)
Q Consensus 158 ~~Pti 162 (162)
.+|.|
T Consensus 83 ~fPv~ 87 (126)
T PF07912_consen 83 DFPVI 87 (126)
T ss_dssp C-SEE
T ss_pred cCCEE
Confidence 56753
No 219
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.43 E-value=0.56 Score=29.18 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=30.0
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
..|+.++|+.|++..-.+++.. -.+....+|......++.+......+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~vP~ 51 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG----VSVEIIDVDPDNPPEDLAELNPYGTVPT 51 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC----CccEEEEcCCCCCCHHHHhhCCCCCCCE
Confidence 4577899999999865554332 2345555665544332555555556664
No 220
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=88.12 E-value=0.096 Score=42.97 Aligned_cols=68 Identities=16% Similarity=0.375 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-CCChHHHHHHcCCcccccC
Q 031285 91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-NAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-d~~~~~la~~~~I~~~Pti 162 (162)
...+.+.. ++...+=+.||++||+.-+.+.|.++-....+ ..+....++- ...+. +.++|++.+.|++
T Consensus 66 ~l~~~ih~--n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~-~~i~h~~vee~~~lps-v~s~~~~~~~ps~ 134 (319)
T KOG2640|consen 66 VLLDAIHG--NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLF-SSIQHFAVEESQALPS-VFSSYGIHSEPSN 134 (319)
T ss_pred HHHHhhcc--ccCCcccccchhcccCcccccCcccchhhhhc-cccccccHHHHhhccc-chhccccccCCcc
Confidence 34455532 44677889999999999999999999888877 3333333322 12345 7889999998875
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.51 E-value=1.6 Score=32.15 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=32.3
Q ss_pred EEEEecC------CChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCC----cccccC
Q 031285 107 IIVWMAS------WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGV----MVSLMI 162 (162)
Q Consensus 107 lV~F~a~------WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I----~~~Pti 162 (162)
||.|.++ ||+.|+.....|+. + ++.+-.+|++...+ +|.+.++- ..+|.|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~----~--~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV 64 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILES----F--RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV 64 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHH----C--CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE
Confidence 3456666 99999988766653 3 57778889987654 24444454 566643
No 222
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=87.46 E-value=1.1 Score=32.14 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=23.3
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (162)
+..|+.+||+.|++....|+ ++ ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~----~~--gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE----EH--DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH----Hc--CCCcEEeeccCCh
Confidence 45678999999999764443 33 4556666665544
No 223
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.09 E-value=0.78 Score=31.80 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=22.4
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
..|+.++|+.|++....|+ ++ ++.|-.+|+..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~----~~--~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLD----EH--GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHH----Hc--CCceEEecccCC
Confidence 4578999999999875554 33 455666666544
No 224
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=86.52 E-value=0.93 Score=27.98 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=30.4
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC----ChHHHHHHcCCcccccC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA----VPHKLVARAGVMVSLMI 162 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~la~~~~I~~~Pti 162 (162)
..|+.++|+.|++.+-.++... -.+....+|... .++ +.+......+|++
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~----l~~~~~~v~~~~~~~~~~~-~~~~~p~~~vP~l 55 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG----IDVPLVTVDLAAGEQRSPE-FLAKNPAGTVPVL 55 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC----CCceEEEeecccCccCCHH-HHhhCCCCCCCEE
Confidence 3577889999999876665443 234555666532 223 5555555666653
No 225
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.50 E-value=1.5 Score=30.53 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 147 (162)
..|+.++|+.|++....|++ + ++.+-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~----~--~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA----N--GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH----c--CCceEEEecCCCh
Confidence 35789999999998755553 3 4566667776543
No 226
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=83.51 E-value=1.2 Score=26.56 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=29.0
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH-HHHHHcCCcccccC
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMVSLMI 162 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~la~~~~I~~~Pti 162 (162)
.|+.++|+.|.+..-.++.. +-.+....++.+.... .+.+..+-..+|++
T Consensus 3 ly~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 53 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK----GLPYELVPVDLGEGEQEEFLALNPLGKVPVL 53 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEE
Confidence 46788999999876555543 2334555565543322 13444556666653
No 227
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.51 E-value=2.1 Score=30.75 Aligned_cols=34 Identities=15% Similarity=0.432 Sum_probs=21.5
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
+..|+.++|+.|+.....|+ ++ ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~----~~--gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE----EN--QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH----Hc--CCCeEEEEeeCC
Confidence 45688999999999764443 33 344444555433
No 228
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.43 E-value=2.1 Score=31.83 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=25.7
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCe
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRL 136 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v 136 (162)
|..|+-+.|+.|....+.++++.+++++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 567889999999999999999999984343
No 229
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=82.35 E-value=1.7 Score=27.05 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=30.0
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC----hHHHHHHcCCccccc
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMVSLM 161 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~la~~~~I~~~Pt 161 (162)
..|+.++|+.|++..-.+++. +-.+....+|.... ++ +.+......+|+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~-~~~~~p~~~vP~ 54 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPE-FLKLNPQHTVPT 54 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHH-HHhhCcCCCCCE
Confidence 357899999999776544443 33456666765332 33 555555556665
No 230
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=81.31 E-value=1.3 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=15.0
Q ss_pred EEEEecCCChhhhhhhHhHH
Q 031285 107 IIVWMASWCRKCIYLKPKLE 126 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~ 126 (162)
+..|+.++|+.|++.+-.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHH
Confidence 34577899999999875444
No 231
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=81.11 E-value=2.9 Score=29.04 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=22.3
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
+..|+.++|+.|++....|++ + ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~----~--gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE----H--QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----C--CCceEEEecCCC
Confidence 345778999999997755543 3 445555666544
No 232
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=80.59 E-value=1.4 Score=27.41 Aligned_cols=48 Identities=6% Similarity=0.082 Sum_probs=25.3
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
.++.++|+.|++.+-.+....- .+..+.++.+.... ..+..+-..+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~-~~~~~~~~~vP~ 50 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT-PIRMIGAKQVPI 50 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH-HHHhcCCCccCE
Confidence 4678899999987655543322 23444444332222 233334445564
No 233
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=80.46 E-value=2.7 Score=27.61 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=31.4
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+..|+.+.|+.|++..-.++. .+-.+.++.+|.....+.+.+......+|.+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~----~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL 70 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAA----KNIPHEVININLKDKPDWFLEKNPQGKVPAL 70 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHH----cCCCCeEEEeCCCCCcHHHHhhCCCCCcCEE
Confidence 344668889999987544443 3334677777765443325555566667753
No 234
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=79.68 E-value=4 Score=32.37 Aligned_cols=46 Identities=17% Similarity=0.397 Sum_probs=38.5
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC----CCeEEEEEECCCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH----PRLRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~ 146 (162)
..|+++||-+-..+|..|..-...|+.|..++. .++.|+.||--..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 569999999999999999998899998887762 3699999986543
No 235
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=78.25 E-value=5.7 Score=29.11 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=30.7
Q ss_pred EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~ 157 (162)
-++.|++|.||=|..-..+++ ..++++-.+..+.-.. +-+++||.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~a-lK~~~gIp 71 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLA-LKRRLGIP 71 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHH-HHHhcCCC
Confidence 466788999999987655544 2456665566665555 77778875
No 236
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=78.03 E-value=3.8 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=21.9
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
+..|+.++|+.|+.....|+ ++ ++.+-.+|+...
T Consensus 2 i~iY~~~~C~~crkA~~~L~----~~--~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLN----AH--QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHH----Hc--CCCeEEEECCCC
Confidence 34678899999999764443 33 455555666543
No 237
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.67 E-value=4.5 Score=31.44 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.2
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd 142 (162)
++.+++.|.-.-|++|+...|.+++..... ++++++..+
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~-~~~~~~~~~ 122 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDD-GKVRLVLRE 122 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhc-CCCceEEEE
Confidence 478899999999999999888888866665 444444333
No 238
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=76.45 E-value=8.3 Score=29.72 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=38.5
Q ss_pred CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285 102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~ 146 (162)
.++.+++.|| +..-..|=.+...|.+..++++ -+++++.+.+|..
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~ 78 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV 78 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcH
Confidence 3588888888 8899999999999999999994 4699999998765
No 239
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=76.30 E-value=18 Score=24.46 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=43.3
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I 156 (162)
++.+++.+++++.+ ..++.++|-|+..--. .....|.+++..+.+++.|+... ..+ +++.+++
T Consensus 2 ~~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~-~~~~~~~ 64 (104)
T cd03069 2 SVELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQ-LLEKYGY 64 (104)
T ss_pred ccccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHH-HHHhcCC
Confidence 35677888888888 6777888878766444 35667888888886677875432 224 6666766
No 240
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=75.41 E-value=13 Score=28.69 Aligned_cols=55 Identities=11% Similarity=0.229 Sum_probs=37.4
Q ss_pred cCCCeEEEEEecCCCh-hhhhhhHhHHHHHHHhC----CCeEEEEEECCCC---hHHHHHHcCC
Q 031285 101 QLDESVIIVWMASWCR-KCIYLKPKLEKLAADYH----PRLRFYNVDVNAV---PHKLVARAGV 156 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~---~~~la~~~~I 156 (162)
.+|++++|.|.=+.|+ -|-.+...+.++.++.. ++++++-|.+|-+ ++ ..++|..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~-~lk~Y~~ 127 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPE-VLKKYAE 127 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHH-HHHHHhc
Confidence 4799999999978886 58777777777777663 3455555554433 34 6677765
No 241
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=73.89 E-value=2.5 Score=26.88 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=13.9
Q ss_pred EEEecCCChhhhhhhHhHH
Q 031285 108 IVWMASWCRKCIYLKPKLE 126 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~ 126 (162)
..++.++|+.|++.+-.++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~ 21 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLT 21 (77)
T ss_pred eEecCCCCchHHHHHHHHH
Confidence 4567789999998764444
No 242
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=73.07 E-value=5.2 Score=25.15 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=31.5
Q ss_pred EecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 110 F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
++.++|+.|++..=.++... -.+.+..++.......+.+...-..+|++
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~----i~~~~~~v~~~~~~~~~~~~~p~~~vPvL 50 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKG----IPYELVPVDPEEKRPEFLKLNPKGKVPVL 50 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHT----EEEEEEEEBTTSTSHHHHHHSTTSBSSEE
T ss_pred CCcCCChHHHHHHHHHHHcC----CeEEEeccCcccchhHHHhhcccccceEE
Confidence 67899999998754443222 24567777766654436666677777753
No 243
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=72.71 E-value=8.6 Score=28.33 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=29.8
Q ss_pred EEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEEC
Q 031285 106 VIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDV 143 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~ 143 (162)
.|..|+..-|+.|....+.++++.+++ +-++.+.-+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 367888999999999999999999999 33344444443
No 244
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=71.85 E-value=27 Score=23.35 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=43.3
Q ss_pred ceecCCHHHHHHHHHHHhc-CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285 83 LTPIGSESQFDRVIAEAQQ-LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~-~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~ 157 (162)
++.+++.++++.++ . .+..++|-|+..--++ ....|.+++..+.+++.|+.. .+.+ +++.+++.
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~~---~~~~F~~vA~~~R~d~~F~~~---~~~~-~~~~~~~~ 66 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDSE---HYKAFEEAAEEFHPYIKFFAT---FDSK-VAKKLGLK 66 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCCH---HHHHHHHHHHhhhcCCEEEEE---CcHH-HHHHcCCC
Confidence 45677888899999 6 6778888777664443 455788888888667777432 2334 55666554
No 245
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=71.61 E-value=12 Score=26.04 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
..+.+.+..+... +.++| |-.---+ .+.+.++.+.+-....-.. .++.-+|. +.++|+|+.+|++
T Consensus 11 ~~L~~l~~~a~~~-~~~~V-~RG~~~g---~~~~t~~~~~~l~~~~~~~--~~v~IdP~-~F~~y~I~~VPa~ 75 (113)
T PF09673_consen 11 ASLRNLLKQAERA-GVVVV-FRGFPDG---SFKPTAKAIQELLRKDDPC--PGVQIDPR-LFRQYNITAVPAF 75 (113)
T ss_pred HHHHHHHHHHHhC-CcEEE-EECCCCC---CHHHHHHHHHHHhhccCCC--cceeEChh-HHhhCCceEcCEE
Confidence 4566666665333 33333 3332223 5555555555444221111 33344566 8999999999985
No 246
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=70.88 E-value=21 Score=24.75 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=37.4
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA 145 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~ 145 (162)
.+|+++||.=-|+-||.=. -...|++|.++|+ .++.++..-+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 6799999999999999888 6678999999995 468888887754
No 247
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=70.04 E-value=32 Score=23.47 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=43.7
Q ss_pred ceecCCHHHHHHHHHHHhcCC-CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285 83 LTPIGSESQFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~-~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~ 158 (162)
++.+++.++++..+ ... ..+||-|+..--+ .....|.++++.+.+++.|+... ..+ +++++++..
T Consensus 2 v~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~-~~~~~~~~~ 67 (107)
T cd03068 2 SKQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSE-IFKSLKVSP 67 (107)
T ss_pred ceEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHH-HHHhcCCCC
Confidence 45677888899988 444 6777777765433 35567888998886778885433 234 667776654
No 248
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=67.15 E-value=7.6 Score=26.46 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=27.4
Q ss_pred EecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (162)
Q Consensus 110 F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~ 157 (162)
||-.+|+-|......+.+... .+.+.|+.+.-+...+ +.+.+++.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~-~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQA-LLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhh-HHHhcCcC
Confidence 688899999999877776622 2456765552222222 44555543
No 249
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=66.18 E-value=16 Score=23.64 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=33.3
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.++..+|..... .....+++..++++.....+.++.+.... +.+.|+|.++|++
T Consensus 33 ~~~v~~v~Vs~d------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~i~~iP~~ 86 (95)
T PF13905_consen 33 KDDVEFVFVSLD------EDEEEWKKFLKKNNFPWYNVPFDDDNNSE-LLKKYGINGIPTL 86 (95)
T ss_dssp TTTEEEEEEE-S------SSHHHHHHHHHTCTTSSEEEETTTHHHHH-HHHHTT-TSSSEE
T ss_pred CCCEEEEEEEeC------CCHHHHHHHHHhcCCCceEEeeCcchHHH-HHHHCCCCcCCEE
Confidence 467667766552 33456666666663445555554445555 9999999999974
No 250
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=65.12 E-value=16 Score=29.30 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=28.2
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCe
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRL 136 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v 136 (162)
..||+.++...+.||+.|-..+=.|-.....| +.+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNF 90 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCe
Confidence 78999999999999999998876665556666 444
No 251
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.59 E-value=3.2 Score=27.22 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHh
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADY 132 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~ 132 (162)
+.|++.-||.|......++++.-.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 6799999999987666666554333
No 252
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=59.08 E-value=13 Score=22.61 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=27.6
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC---hHHHHHHcCCccccc
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMVSLM 161 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~la~~~~I~~~Pt 161 (162)
.|+.++|+.|++..-.++... -.+....+|.... .+.+.+...-..+|+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~----~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~ 54 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLG----IPYEWVEVDILKGETRTPEFLALNPNGEVPV 54 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcC----CCcEEEEecCCCcccCCHHHHHhCCCCCCCE
Confidence 577889999998765544432 3456666664321 121444444455665
No 253
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=52.19 E-value=88 Score=22.63 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=44.7
Q ss_pred HHHHHHHHH----hcCCCeEEEEEecCCC----hhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--------------
Q 031285 91 QFDRVIAEA----QQLDESVIIVWMASWC----RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-------------- 148 (162)
Q Consensus 91 ~f~~~l~~~----~~~~~~vlV~F~a~WC----~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-------------- 148 (162)
.+.+.+..| +...|+++|+.+.+-- ..|+...-. +.+.+-...++.+..-|+.....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~ 83 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGS 83 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhH
Confidence 355566555 6889999999998866 345443210 22333334568899999876531
Q ss_pred ---HHHHHcCCcccccC
Q 031285 149 ---KLVARAGVMVSLMI 162 (162)
Q Consensus 149 ---~la~~~~I~~~Pti 162 (162)
..++.++...+|.+
T Consensus 84 ~a~~~~~~~~~~~fP~~ 100 (136)
T cd02990 84 VAAQTIRNIKTDQLPAI 100 (136)
T ss_pred HHHHHHHhcCcCCCCeE
Confidence 14556778888864
No 254
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=50.51 E-value=18 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=20.7
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (162)
+..|+.+.|..|+.....|+ ++ ++.+-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~----~~--gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE----AA--GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH----Hc--CCCcEEeehhc
Confidence 34678999999998764443 43 34444455533
No 255
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=50.35 E-value=29 Score=26.66 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEe--cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWM--ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP 147 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~--a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~ 147 (162)
+.-.|.+.+ +.-+.|.|. |..-+.|-.+...+.+++-+++ .+++.+.+.+|...
T Consensus 22 g~i~fhd~~------gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ve 78 (224)
T KOG0854|consen 22 GKIKFHDYL------GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVE 78 (224)
T ss_pred cceehhhhc------ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHH
Confidence 444566666 555667776 7799999999999999999994 46999999987653
No 256
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=48.01 E-value=46 Score=23.93 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.+.+.+..+...+.++++.=+-.. .=+.....+.+|..+- +. .++.=+|. +.++|+|+.+|++
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~-~~-----~~v~IdP~-lF~~f~I~~VPa~ 75 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDG-GK-----SGVQIDPQ-WFKQFDITAVPAF 75 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcC-CC-----CcEEEChH-HHhhcCceEcCEE
Confidence 4566666665444554444322222 2223333333333322 21 23334667 8999999999985
No 257
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=47.51 E-value=25 Score=21.97 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=28.2
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC---hHHHHHHcCCccccc
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PHKLVARAGVMVSLM 161 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~la~~~~I~~~Pt 161 (162)
..|+.+.|+.|++.+-.+++. +-.+.+..+|.... ..++.+-..-..+|+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~ 54 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPV 54 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCE
Confidence 457788899997776333333 33467777776321 221554444555554
No 258
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=61 Score=24.24 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=33.0
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.+|+++||.=.|+-||.=-+ -..|+.|.++|++ ++.++..-++
T Consensus 23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEecccc
Confidence 57999999999999998543 3456778888843 5888887765
No 259
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.68 E-value=27 Score=21.40 Aligned_cols=51 Identities=6% Similarity=-0.093 Sum_probs=27.2
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
.|+.+.|+.|.+..-.++... .+-.+..+.+|......++.+......+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~ 53 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPA 53 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCE
Confidence 466788999987654444310 222356666654333222445445555664
No 260
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=42.39 E-value=34 Score=23.48 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=20.6
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (162)
..|+.+-|..|++....|+ ++ ++.+..+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~----~~--~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE----EA--GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHH----HC--CCCeEEEeccc
Confidence 4678999999999764444 33 44444566543
No 261
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=42.04 E-value=38 Score=20.76 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=27.8
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC---ChHHHHHHcCCccccc
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMVSLM 161 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~la~~~~I~~~Pt 161 (162)
+..|+.+.|+.|++..-.++... -.+....++... ..+.+.+......+|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~----i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~ 55 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG----VDYELVPVDLTKGEHKSPEHLARNPFGQIPA 55 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC----CCcEEEEeCccccccCCHHHHhhCCCCCCCE
Confidence 34556777999988765544432 235665566532 1222555555555554
No 262
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=39.48 E-value=39 Score=25.49 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=31.9
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
++...+-.|+.++|+.|.+..=.+++. +-.+.+..+|....+.++.+-.--..+|+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~nP~g~VPv 61 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEK----GVSVEIEQVEKDNLPQDLIDLNPYQSVPT 61 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHC----CCCCEEEeCCcccCCHHHHHhCCCCCCCE
Confidence 344445566678899999887555443 23456667776544332444444445554
No 263
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=38.95 E-value=42 Score=23.17 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=21.4
Q ss_pred EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
..|+.+-|..|++....+++ + ++.+..+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~----~--~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED----K--GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH----C--CCCeEEEeccCC
Confidence 46789999999998755543 3 344445665433
No 264
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=38.64 E-value=44 Score=20.49 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=26.4
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC-ccccc
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV-MVSLM 161 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I-~~~Pt 161 (162)
.++.+.|+.|++..=.++... -.+....+|.......+.+.... ..+|+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~g----l~~~~~~~~~~~~~~~~~~~~p~~~~vP~ 52 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKG----VPYEYVEEDLGNKSELLLASNPVHKKIPV 52 (74)
T ss_pred EEECCCCchHHHHHHHHHHcC----CCCEEEEeCcccCCHHHHHhCCCCCCCCE
Confidence 456778999988765444332 24555556654333313332222 46665
No 265
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=37.74 E-value=35 Score=22.89 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=28.4
Q ss_pred cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 112 a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
-.+|+.|++.+=.+++. +-.+.+..+|....++.+.+-.-...+|+
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPv 64 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPF 64 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCE
Confidence 35888998876555433 23457777777776664555455555664
No 266
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.79 E-value=37 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.8
Q ss_pred EEEEecCCChhhhhhhHhHH
Q 031285 107 IIVWMASWCRKCIYLKPKLE 126 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~ 126 (162)
+..|+.|-|+.|+.....|+
T Consensus 3 itiy~~p~C~t~rka~~~L~ 22 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE 22 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH
Confidence 45688999999999875554
No 267
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=36.58 E-value=2.1e+02 Score=22.50 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCeEEEEEecCCC-hh-hhhhhHhHHHHHHHh----CCCeEEEEEECCCChHHHHH----HcCCcccc
Q 031285 102 LDESVIIVWMASWC-RK-CIYLKPKLEKLAADY----HPRLRFYNVDVNAVPHKLVA----RAGVMVSL 160 (162)
Q Consensus 102 ~~~~vlV~F~a~WC-~~-C~~~~p~l~~l~~~~----~~~v~~~~vd~d~~~~~la~----~~~I~~~P 160 (162)
=+++|-|.+|.+-- ++ =......++++.++| ++++++-.||.+.+++ .++ ++||...+
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~-~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPS-EAEEKAKEYGIQPVQ 90 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChH-HHHHHHHhcCCCccc
Confidence 35566666665541 11 234445555555555 3479999999987776 444 48887654
No 268
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=34.88 E-value=40 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 125 LEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 125 l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
+.++.++++..+.| |.... +.++|+|+.+|++
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~-Lt~rF~I~~VPav 189 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGK-LTQKFGIKHVPAR 189 (202)
T ss_pred HHHHHHHhCCceEE-----cCCch-HhhccCceeeceE
Confidence 56778888444555 66667 9999999999975
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.52 E-value=1e+02 Score=18.17 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285 112 ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (162)
Q Consensus 112 a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (162)
.=.|+.|.. .+++..... +++.-+.+|...
T Consensus 6 ~m~C~~C~~---~v~~~l~~~-~GV~~v~vd~~~ 35 (62)
T PF00403_consen 6 GMTCEGCAK---KVEKALSKL-PGVKSVKVDLET 35 (62)
T ss_dssp STTSHHHHH---HHHHHHHTS-TTEEEEEEETTT
T ss_pred CcccHHHHH---HHHHHHhcC-CCCcEEEEECCC
Confidence 447999965 445555555 678888888753
No 270
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=59 Score=25.35 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred EEEEEecCCChhhhhhhHhHHHHHHHh
Q 031285 106 VIIVWMASWCRKCIYLKPKLEKLAADY 132 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~~l~~~~ 132 (162)
.|.+.+-|-|+.|.-..|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 567889999999999999999999875
No 271
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=31.26 E-value=1.6e+02 Score=21.96 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
..|-+.+. +.+++.-|.|-+.- ..+ ..+.+..+++.+.+..+-..-+...+ +.++|+|.++|++
T Consensus 56 k~fYe~l~---~~~~~fEVvfVS~D-~~~----~~~~~y~~~~~~~W~~iPf~d~~~~~-l~~ky~v~~iP~l 119 (157)
T KOG2501|consen 56 KDFYEELK---DNAAPFEVVFVSSD-RDE----ESLDEYMLEHHGDWLAIPFGDDLIQK-LSEKYEVKGIPAL 119 (157)
T ss_pred HHHHHHHH---hcCCceEEEEEecC-CCH----HHHHHHHHhcCCCeEEecCCCHHHHH-HHHhcccCcCcee
Confidence 35555553 55666666554432 233 33444455544666666655555556 8999999999974
No 272
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.21 E-value=1.1e+02 Score=23.15 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=36.2
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.+|+++||.=-|+.||-=..--..|..|.++|++ ++.++..-+.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 5699999888899999988667789999999954 5888877764
No 273
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.00 E-value=96 Score=24.50 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=25.4
Q ss_pred CeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCe
Q 031285 104 ESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRL 136 (162)
Q Consensus 104 ~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v 136 (162)
..+-|++| -.-|+.|-.-.+.|+++..+++..+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 34455555 4689999999999999999995443
No 274
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=30.88 E-value=56 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 126 EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 126 ~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.++.++++..+-| |+... |.++|+|+.+|.+
T Consensus 157 ~~~~~~l~~~vYf-----dQ~G~-Lt~rF~I~~VPAv 187 (209)
T PRK13738 157 PEMSKALDSRIYF-----DQNGV-LCQRFGIDQVPAR 187 (209)
T ss_pred HHHHHHhCCceEE-----cCcch-HHHhcCCeeeceE
Confidence 5667777444555 66666 9999999999975
No 275
>PRK10853 putative reductase; Provisional
Probab=30.45 E-value=67 Score=22.42 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=21.4
Q ss_pred EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285 107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 145 (162)
+..|+.+-|..|++....|+ ++ ++.+--+|+-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~----~~--~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE----AQ--GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH----Hc--CCCcEEeehcc
Confidence 44677999999999875555 33 44444455543
No 276
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=28.09 E-value=1.3e+02 Score=24.38 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCCeEEEEEecCCChh-hhhhhHhHHHHHHHhC--CCe----EEEEEECCCC
Q 031285 102 LDESVIIVWMASWCRK-CIYLKPKLEKLAADYH--PRL----RFYNVDVNAV 146 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~--~~v----~~~~vd~d~~ 146 (162)
.|+.+|++|.=+.|+. |=.+...|-++.++.+ +++ .|+.||-+..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD 189 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD 189 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence 5999999999999985 6666656655555542 222 5777776433
No 277
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=27.54 E-value=40 Score=19.53 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=14.7
Q ss_pred CCChhhhhhhHhHHHHHHHh
Q 031285 113 SWCRKCIYLKPKLEKLAADY 132 (162)
Q Consensus 113 ~WC~~C~~~~p~l~~l~~~~ 132 (162)
-+|.||+.=.+.+.++.++.
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i 36 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKI 36 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHH
T ss_pred CCCCCcHhHHHHHHHHHHHH
Confidence 47999998888888887776
No 278
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=27.24 E-value=46 Score=30.02 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHHhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCChH
Q 031285 95 VIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPH 148 (162)
Q Consensus 95 ~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~ 148 (162)
...++++.++++++-..-+.|..|..|... | ++.++.+..+++-++||.++-|+
T Consensus 104 af~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPD 160 (786)
T KOG2244|consen 104 AFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPD 160 (786)
T ss_pred HHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCc
Confidence 333334899999999999999999877633 3 23555554556667777777665
No 279
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.49 E-value=1.9e+02 Score=18.77 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285 88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157 (162)
Q Consensus 88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~ 157 (162)
+.+.....+ .+++.-+| |-|.-|++ .....+..+++++ ++.++.++ ...+ |.+..|+.
T Consensus 15 G~~~v~kai----~~gkaklV-iiA~D~~~--~~~~~i~~~c~~~--~Vp~~~~~--s~~e-LG~a~G~~ 72 (82)
T PRK13602 15 GTKQTVKAL----KRGSVKEV-VVAEDADP--RLTEKVEALANEK--GVPVSKVD--SMKK-LGKACGIE 72 (82)
T ss_pred cHHHHHHHH----HcCCeeEE-EEECCCCH--HHHHHHHHHHHHc--CCCEEEEC--CHHH-HHHHHCCC
Confidence 444555556 56776666 56889999 5777888888887 57776666 3344 77766654
No 280
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=25.94 E-value=1.7e+02 Score=22.42 Aligned_cols=46 Identities=7% Similarity=0.101 Sum_probs=27.5
Q ss_pred cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC
Q 031285 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV 146 (162)
Q Consensus 101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~ 146 (162)
..+++||++|| +.--+.|-+..=.|..-.++++. +..++.+..|..
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s 135 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDS 135 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCch
Confidence 35668888888 55666676554444444444422 467777766543
No 281
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=25.00 E-value=27 Score=25.57 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=11.5
Q ss_pred CChhhhhhhHhHH
Q 031285 114 WCRKCIYLKPKLE 126 (162)
Q Consensus 114 WC~~C~~~~p~l~ 126 (162)
-|++|++..|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999999984
No 282
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=24.91 E-value=2.5e+02 Score=19.77 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCChH
Q 031285 103 DESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPH 148 (162)
Q Consensus 103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~ 148 (162)
++..+|-|--+--+-=..+.+.++++|+++ .++..|+-||-|..|-
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPl 67 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPL 67 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCch
Confidence 566677787788888899999999999998 4679999999998875
No 283
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=24.77 E-value=2.5e+02 Score=21.98 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285 89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI 162 (162)
Q Consensus 89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti 162 (162)
.+.+.+++..+...|.++++.=.-. +.-+.....+.+|.++- . ...+ .-+|. +.++|+|+.+|++
T Consensus 102 ~~sLk~Ll~qa~~~G~p~VlRG~~~--nsfk~Ta~~v~~L~~~~---~-~~gv--~IDP~-lF~~F~I~~VPaf 166 (212)
T PRK13730 102 EEGLKRMLGETRHYGIPATLRGMVN--NDLKTTAEAVLSLVKDG---A-TDGV--QIDPT-LFSQYGIRSVPAL 166 (212)
T ss_pred HHHHHHHHHHHHHhCCcEEEeCCCC--CCHHHHHHHHHHHhccC---C-CCce--eECHH-HHHhcCCccccEE
Confidence 3556666665544455544432222 23334433444443221 1 1122 23567 8999999999985
No 284
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.64 E-value=2.3e+02 Score=24.53 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=25.2
Q ss_pred EEEEEecCCChhhhhhh--HhHHHHHHHhC-CCeEEEEEECC
Q 031285 106 VIIVWMASWCRKCIYLK--PKLEKLAADYH-PRLRFYNVDVN 144 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~--p~l~~l~~~~~-~~v~~~~vd~d 144 (162)
..|...+ .||+||.-. ..+.+..++.+ ++|.++.+|.+
T Consensus 73 ~~vlmt~-TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e 113 (420)
T COG3581 73 DAVLMTQ-TGGPCRFGNYIELLRKALKDAGFRDVPVISLNSE 113 (420)
T ss_pred cEEEEec-CCCCcchhhHHHHHHHHHHHcCCCCCcEEEeecc
Confidence 3444444 999998543 45555556654 57999999943
No 285
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=24.57 E-value=29 Score=25.51 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.6
Q ss_pred CChhhhhhhHhHH
Q 031285 114 WCRKCIYLKPKLE 126 (162)
Q Consensus 114 WC~~C~~~~p~l~ 126 (162)
-|++|++..|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999999884
No 286
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=24.46 E-value=2.2e+02 Score=18.96 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285 90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142 (162)
Q Consensus 90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd 142 (162)
+.+.+.+.. -.+.+.++.|..+- ..|..+...++++++-. +++.+...+
T Consensus 8 ~qL~~~f~~--l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~ 56 (94)
T cd02974 8 QQLKAYLER--LENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDN 56 (94)
T ss_pred HHHHHHHHh--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEec
Confidence 345555532 34555566666555 89999998899988876 666664433
No 287
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=24.08 E-value=88 Score=23.99 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=20.8
Q ss_pred CChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 114 WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 114 WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
=||.|+.. |.++++ +.++++++..|-...
T Consensus 156 PCGaC~ew---L~KIAe-~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKEW---LRKIAE-ANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHHH---HHHHHH-hCCCeEEEEecCCCc
Confidence 48888765 566666 568999998876543
No 288
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=23.97 E-value=94 Score=22.02 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=16.1
Q ss_pred EEEEEecCCChhhhhhhHhHH
Q 031285 106 VIIVWMASWCRKCIYLKPKLE 126 (162)
Q Consensus 106 vlV~F~a~WC~~C~~~~p~l~ 126 (162)
.+..|+.+-|..|++....|+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~ 22 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALK 22 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHH
Confidence 355678999999999875554
No 289
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=23.59 E-value=32 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEE
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY 139 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~ 139 (162)
....++=.||.-||..|-- |.+.+-....++++.-+
T Consensus 4 k~~~~~gk~~iyWCe~cNl--Pl~~~~c~~cg~~~~~l 39 (202)
T COG5270 4 KMPVVLGKFPIYWCEKCNL--PLLGRRCSVCGSKVEEL 39 (202)
T ss_pred ccceeecccceeehhhCCC--ccccccccccCCcceEE
Confidence 4666778899999999963 44444444443333333
No 290
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=23.53 E-value=1.8e+02 Score=21.19 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=34.9
Q ss_pred cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC
Q 031285 101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156 (162)
Q Consensus 101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I 156 (162)
..+++-.|.+|-.-|+-|-...-.+.+.- .++.+.|..+..+.... +.+..++
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~-~l~~~~l 56 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQA-LLEAAGL 56 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhh-HHhhcCC
Confidence 45667777889999999998554443321 23468888877665554 5555554
No 291
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=72 Score=24.98 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=39.8
Q ss_pred EecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCccccc
Q 031285 110 WMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLM 161 (162)
Q Consensus 110 F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pt 161 (162)
...+-+ ++..+...+++|+++|.+ .+.++.=|++.--+++|.++.-+.+|.
T Consensus 80 lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~ 131 (214)
T KOG0324|consen 80 LGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPS 131 (214)
T ss_pred ecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccH
Confidence 344443 567888899999999954 588888899887766999988888874
No 292
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.46 E-value=1.1e+02 Score=20.65 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=18.5
Q ss_pred EecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285 110 WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146 (162)
Q Consensus 110 F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 146 (162)
|+.+-|..|+.....|+ ++ ++.+-.+|+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~----~~--gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLE----EN--GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHH----HT--T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHH----Hc--CCCeEeehhhhC
Confidence 56789999999875555 33 455556777654
No 293
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=22.99 E-value=91 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=18.8
Q ss_pred ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChh
Q 031285 83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRK 117 (162)
Q Consensus 83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~ 117 (162)
...+++.++|.+.+ ++++.+ .++|||.
T Consensus 128 ~~~~~~~~e~~~~~----~~~~~v----~~~wcg~ 154 (202)
T cd00862 128 TRIVDTWEEFKEAL----NEKGIV----LAPWCGE 154 (202)
T ss_pred eEeeCCHHHHHHHH----hcCCEE----EEEecCC
Confidence 55577888888888 555543 4689983
No 294
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.86 E-value=1.6e+02 Score=21.44 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=24.1
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEE
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFY 139 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~ 139 (162)
.|+-.-|+.|--..+.++++.++++-.+.+.
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~ 33 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYR 33 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEe
Confidence 3556799999999999999999885444443
No 295
>PRK10026 arsenate reductase; Provisional
Probab=22.60 E-value=93 Score=22.62 Aligned_cols=20 Identities=10% Similarity=0.178 Sum_probs=15.6
Q ss_pred EEEEecCCChhhhhhhHhHH
Q 031285 107 IIVWMASWCRKCIYLKPKLE 126 (162)
Q Consensus 107 lV~F~a~WC~~C~~~~p~l~ 126 (162)
+..|+.+-|..|+.....|+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~ 23 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIR 23 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHH
Confidence 45678999999999875554
No 296
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=22.48 E-value=2.2e+02 Score=20.83 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
.++-+.+.++++.++-|.-+.-.++.+++.|.+ ++.+-.++..
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 345577888899999999999999999999965 5666555543
No 297
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=21.67 E-value=35 Score=13.02 Aligned_cols=6 Identities=50% Similarity=1.265 Sum_probs=4.1
Q ss_pred ccceee
Q 031285 2 YGAIRL 7 (162)
Q Consensus 2 ~~~~~~ 7 (162)
||-+||
T Consensus 4 yghmrf 9 (9)
T PF08257_consen 4 YGHMRF 9 (9)
T ss_pred cccccC
Confidence 777765
No 298
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=2.5e+02 Score=21.54 Aligned_cols=44 Identities=7% Similarity=0.166 Sum_probs=29.5
Q ss_pred cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285 101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN 144 (162)
Q Consensus 101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 144 (162)
..++.|++.|| ..+--.|=.+.-.|-..++++.. +-.++.+.+|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D 76 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD 76 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc
Confidence 67899999888 66777786666677777777632 3444444443
No 299
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=20.64 E-value=1.5e+02 Score=18.19 Aligned_cols=48 Identities=2% Similarity=-0.011 Sum_probs=26.4
Q ss_pred EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC---ChHHHHHHcCCccccc
Q 031285 109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA---VPHKLVARAGVMVSLM 161 (162)
Q Consensus 109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~~~la~~~~I~~~Pt 161 (162)
.|+.+-|+.|.+..-.++.. +-.+.+..+|... .++ +.+-.-...+|+
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~----gi~~~~~~v~~~~~~~~~~-~~~~nP~~~vP~ 53 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYN----GLDVEIVDFQPGKENKTPE-FLKKFPLGKVPA 53 (75)
T ss_pred EecCCCCccHHHHHHHHHHc----CCceEEEecccccccCCHH-HHHhCCCCCCCE
Confidence 35666788888765544433 2345666777642 233 444444555554
Done!