BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031288
         (162 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana
           GN=At1g05835 PE=2 SV=1
          Length = 127

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 86  YTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYN--DCLVNEGKPLVSGGTL 143
           + VE+MN C   C I  + L C  F  + L++   L+ LS +  +C+VN+G PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 105

Query: 144 KFQYANTFLYPL 155
            F Y+NT  + L
Sbjct: 106 SFNYSNTHQFAL 117


>sp|P59934|COOS1_CARHZ Carbon monoxide dehydrogenase 1 OS=Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008) GN=cooS1
           PE=1 SV=3
          Length = 636

 Score = 33.5 bits (75), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 53  KKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSS 112
           K+  P  W +     + V      G+MP+ I     EIM     GC+   ++L  G    
Sbjct: 157 KRNVPCNWAKETLTAERVDKLAELGVMPHNIDAVITEIMGRTHVGCDADAVNLLLGGIKG 216

Query: 113 AHLINHKILKRLSYNDCLVNEGKPLVSG---GTLKFQYANTFLY---PLTVSSVVC 162
           A      +      +D +    KP+++    G LK    N  ++   PL +S ++C
Sbjct: 217 ALADYTGMCLSTELSDVIFGTPKPVITQANLGVLKEDAVNIAVHGHNPL-LSEIIC 271


>sp|Q27707|SYI_ANTLO Isoleucine--tRNA ligase (Fragment) OS=Antonospora locustae PE=3
           SV=1
          Length = 628

 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 61  GERCTK-EDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISE-IHLNCGWFSSAHLINH 118
           GE+  + E++      +G MP     +  E  N C     ++E +    GWF + H+I+ 
Sbjct: 422 GEKYRRIEEVFDCWFESGCMPYAQRHWPFECDNLCLPADFVAEGVDQTRGWFYTMHVIST 481

Query: 119 KILKRLSYNDCLVN 132
            +L +  + +C+VN
Sbjct: 482 VLLAKPRFRNCIVN 495


>sp|Q895K2|DPO3_CLOTE DNA polymerase III PolC-type OS=Clostridium tetani (strain
           Massachusetts / E88) GN=polC PE=3 SV=1
          Length = 1427

 Score = 31.6 bits (70), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 128 DCLVNEGKPLVSGGTLKFQYANTFLY 153
           +CL++  + ++   TLK QY N FLY
Sbjct: 103 ECLISSKRKVIDENTLKLQYGNDFLY 128


>sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D OS=Rattus norvegicus GN=Znf385d PE=2 SV=1
          Length = 395

 Score = 30.8 bits (68), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 97  GCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLT 156
            CNI ++  N    ++AH    K  K+L   + + N+ K + +  + K  + +    P+T
Sbjct: 81  SCNICQLRFNSDSQAAAHYKGTKHAKKLKALESMKNKQKSVTAKDSAKTTFTSITTNPIT 140

Query: 157 VSS 159
            SS
Sbjct: 141 TSS 143


>sp|A3CM55|SECY2_STRSV Accessory Sec system protein translocase subunit SecY2
           OS=Streptococcus sanguinis (strain SK36) GN=secY2 PE=3
           SV=1
          Length = 407

 Score = 30.0 bits (66), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 2   LLALALAFLSISGDDDDMGIIKRGRFISSSSDGGS 36
           +LALA AF++ISGD     + K G +I +   GG+
Sbjct: 299 ILALAFAFINISGDQIAERMQKSGEYIENVYPGGA 333


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,217,349
Number of Sequences: 539616
Number of extensions: 2539401
Number of successful extensions: 4380
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4375
Number of HSP's gapped (non-prelim): 7
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)