Query 031288
Match_columns 162
No_of_seqs 105 out of 136
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 11:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09478 CBM49: Carbohydrate b 96.8 0.0055 1.2E-07 43.4 6.5 74 69-149 1-79 (80)
2 PLN02171 endoglucanase 89.8 0.72 1.6E-05 44.5 5.8 77 66-150 534-615 (629)
3 PF10633 NPCBM_assoc: NPCBM-as 52.2 35 0.00076 23.3 4.4 50 82-148 5-57 (78)
4 PF14016 DUF4232: Protein of u 48.2 52 0.0011 24.6 5.1 78 64-151 1-82 (131)
5 PF06682 DUF1183: Protein of u 45.8 1.3E+02 0.0028 27.1 8.0 56 63-122 58-113 (318)
6 PLN02340 endoglucanase 43.3 21 0.00045 34.7 2.8 78 65-148 518-600 (614)
7 PF07705 CARDB: CARDB; InterP 36.9 1.2E+02 0.0026 20.4 5.1 68 68-152 3-72 (101)
8 PF03330 DPBB_1: Rare lipoprot 31.0 28 0.00061 23.9 1.2 28 84-112 38-65 (78)
9 COG3900 Predicted periplasmic 30.9 31 0.00067 30.3 1.7 19 76-94 206-224 (262)
10 PF01345 DUF11: Domain of unkn 26.2 1.5E+02 0.0033 19.8 4.2 30 76-107 35-64 (76)
11 PF02933 CDC48_2: Cell divisio 23.8 57 0.0012 21.7 1.7 24 133-157 15-38 (64)
12 cd00602 IPT_TF IPT domain of e 22.5 2.4E+02 0.0051 21.1 4.9 74 65-148 27-100 (101)
13 PF09270 BTD: Beta-trefoil DNA 21.9 1.2E+02 0.0025 24.9 3.4 49 98-150 71-123 (158)
No 1
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=96.81 E-value=0.0055 Score=43.39 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=55.0
Q ss_pred eeEEeeecCCCCC-Cc--ceEEEEEEcCccCCcccccEEEecCCcc-cceeeCccceeeecCCceEe-cCCcccCCCCeE
Q 031288 69 IVITQGPTGIMPN-GI--PTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLV-NEGKPLVSGGTL 143 (162)
Q Consensus 69 I~V~Q~~TG~~v~-G~--Pef~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLV-N~G~PI~~g~~V 143 (162)
|+|.|..+..+.. |. .+|.|+|+|.+ .=+++++++....+. +.= .+-+ ..++.+-+ +.-.+|.+|+++
T Consensus 1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~--~~~I~~~~i~~~~l~~~iW----~l~~-~~~~~y~lPs~~~~i~pg~s~ 73 (80)
T PF09478_consen 1 ITITQTLVNSWTENGQTYTQYDVTITNNG--SKPIKSLKISIDNLYGSIW----GLDK-VSGNTYTLPSYQPTIKPGQSF 73 (80)
T ss_pred CEEEEEEEeEEEeCCEEEEEEEEEEEECC--CCeEEEEEEEECccchhhe----eEEe-ccCCEEECCccccccCCCCEE
Confidence 6889999888754 43 46999999999 679999999999775 211 2222 45666776 333499999999
Q ss_pred EEEEec
Q 031288 144 KFQYAN 149 (162)
Q Consensus 144 sF~YAw 149 (162)
+|-|-.
T Consensus 74 ~FGYI~ 79 (80)
T PF09478_consen 74 TFGYIS 79 (80)
T ss_pred EEEEEe
Confidence 999953
No 2
>PLN02171 endoglucanase
Probab=89.77 E-value=0.72 Score=44.54 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCeeEEeeecCCCCC---CcceEEEEEEcCccCCcccccEEEecCCcc-cceeeCccceeeecCCceEecCCc-ccCCC
Q 031288 66 KEDIVITQGPTGIMPN---GIPTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLVNEGK-PLVSG 140 (162)
Q Consensus 66 ~sDI~V~Q~~TG~~v~---G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLVN~G~-PI~~g 140 (162)
.+.|+|.|..++.+.. +..+|+|+|+|++ ..|++++++.=..+- +.= .+.+ .++...+=+-. -|.+|
T Consensus 534 ~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s--~~~ik~i~i~~~~~~~~iW----~v~~--~~ngytlPs~~~sL~aG 605 (629)
T PLN02171 534 SSPIEIEQKATASWKAKGRTYYRYSTTVTNRS--AKTLKELHLGISKLYGPLW----GLTK--AGYGYVLPSWMPSLPAG 605 (629)
T ss_pred cceeEEEEEEEEEEEcCCceEEEEEEEEEECC--CCceeeeeeeeccccccch----heee--cCCcccCchhhcccCCC
Confidence 3379999999988863 4677999999999 899999999754432 211 1222 22334444432 78889
Q ss_pred CeEEEEEecC
Q 031288 141 GTLKFQYANT 150 (162)
Q Consensus 141 ~~VsF~YAw~ 150 (162)
++++|-|-+.
T Consensus 606 ~s~tFgyI~~ 615 (629)
T PLN02171 606 KSLEFVYVHS 615 (629)
T ss_pred CeeEEEeecC
Confidence 9999999955
No 3
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=52.23 E-value=35 Score=23.26 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=25.4
Q ss_pred CcceEEEEEEcCccCCcccccEEEec---CCcccceeeCccceeeecCCceEecCCcccCCCCeEEEEEe
Q 031288 82 GIPTYTVEIMNACETGCNISEIHLNC---GWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYA 148 (162)
Q Consensus 82 G~Pef~VtI~N~C~~~C~~s~V~L~C---gGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~VsF~YA 148 (162)
..-+++|+|.|.+ .-+..++.|+- .|+. ...+|.-+. .|.+|++.++++.
T Consensus 5 ~~~~~~~tv~N~g--~~~~~~v~~~l~~P~GW~--~~~~~~~~~-------------~l~pG~s~~~~~~ 57 (78)
T PF10633_consen 5 ETVTVTLTVTNTG--TAPLTNVSLSLSLPEGWT--VSASPASVP-------------SLPPGESVTVTFT 57 (78)
T ss_dssp EEEEEEEEEE--S--SS-BSS-EEEEE--TTSE-----EEEEE---------------B-TTSEEEEEEE
T ss_pred CEEEEEEEEEECC--CCceeeEEEEEeCCCCcc--ccCCccccc-------------cCCCCCEEEEEEE
Confidence 3456999999999 66777887765 3554 223333221 5666776666553
No 4
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=48.25 E-value=52 Score=24.64 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=49.2
Q ss_pred CCCCCeeEEeeecCCCCCCcceEEEEEEcCccCCcccccEEEecCCcccceeeCcccee----eecCCceEecCCcccCC
Q 031288 64 CTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILK----RLSYNDCLVNEGKPLVS 139 (162)
Q Consensus 64 Cs~sDI~V~Q~~TG~~v~G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifr----rl~~d~CLVN~G~PI~~ 139 (162)
|...++.|+-..... ..|...+.|+++|.=...|.+ .||.....+|..=-. ....+. -..--.|.+
T Consensus 1 C~~~~L~~~~~~~~~-~~g~~~~~l~~tN~s~~~C~l-------~G~P~v~~~~~~g~~~~~~~~~~~~--~~~~vtL~P 70 (131)
T PF14016_consen 1 CTAADLSVTVGPVDA-GAGQRHATLTFTNTSDTPCTL-------YGYPGVALVDADGAPLGVPAVREGP--PPRPVTLAP 70 (131)
T ss_pred CCcccEEEEEecccC-CCCccEEEEEEEECCCCcEEe-------ccCCcEEEECCCCCcCCccccccCC--CCCcEEECC
Confidence 888999998876633 457889999999977666777 466665555432211 000111 122235678
Q ss_pred CCeEEEEEecCC
Q 031288 140 GGTLKFQYANTF 151 (162)
Q Consensus 140 g~~VsF~YAw~~ 151 (162)
|++..|.-.|..
T Consensus 71 G~sA~a~l~~~~ 82 (131)
T PF14016_consen 71 GGSAYAGLRWSN 82 (131)
T ss_pred CCEEEEEEEEec
Confidence 888888777754
No 5
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=45.77 E-value=1.3e+02 Score=27.14 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=37.6
Q ss_pred CCCCCCeeEEeeecCCCCCCcceEEEEEEcCccCCcccccEEEecCCcccceeeCcccee
Q 031288 63 RCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILK 122 (162)
Q Consensus 63 ~Cs~sDI~V~Q~~TG~~v~G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifr 122 (162)
.|..-.+.|-|=.--..-+-..||+=+-.= +..=-+..|.|.|.|+.+.+ ||=|||
T Consensus 58 ~c~~~~p~vvqC~N~G~dg~dvqW~C~A~L--p~~~klG~~~V~CEGY~~pd--DpyvLk 113 (318)
T PF06682_consen 58 GCDLYEPDVVQCTNQGYDGEDVQWECKADL--PNEYKLGSTDVSCEGYDYPD--DPYVLK 113 (318)
T ss_pred cccccCcceEEEEecCCCCcccceEEeCCC--CcceeecceEEeeecccCCC--CceecC
Confidence 477777777775442233456778744321 12456778999999999964 999998
No 6
>PLN02340 endoglucanase
Probab=43.35 E-value=21 Score=34.69 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCCeeEEeeecCCCCCC---cceEEEEEEcCccCCcccccEEEecCCcc-cceeeCccceeeecCCceEecCC-cccCC
Q 031288 65 TKEDIVITQGPTGIMPNG---IPTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLVNEG-KPLVS 139 (162)
Q Consensus 65 s~sDI~V~Q~~TG~~v~G---~Pef~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLVN~G-~PI~~ 139 (162)
+..++.+.|.-+..+..+ .-+|.|+|+|+| .=|++.+++.=..+- ..-.|.|.+= .+++.+-+= ..|.+
T Consensus 518 ~~~~~e~~~~~~~sw~~~g~~y~~~~v~i~N~s--~~pi~~l~~~~~~l~g~lwgl~~~~~----~~~y~~p~~~~tl~~ 591 (614)
T PLN02340 518 SGAPVEFVHSITNTWTAGGTTYYRHKVIIKNKS--QKPITDLKLVIEDLSGPIWGLNPTKE----KNTYELPQWQKVLQP 591 (614)
T ss_pred CCCchhhhhhheeeeecCCceEEEEEEEEEeCC--CCCchhhhhhhhhcccchhcceeccc----cCCccCchhhhccCC
Confidence 355567778777766543 556999999999 789999988764443 2222332211 233444433 47888
Q ss_pred CCeEEEEEe
Q 031288 140 GGTLKFQYA 148 (162)
Q Consensus 140 g~~VsF~YA 148 (162)
|+.++|.|-
T Consensus 592 g~~~~f~yi 600 (614)
T PLN02340 592 GSQLSFVYV 600 (614)
T ss_pred CCeeEEEec
Confidence 999999998
No 7
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=36.92 E-value=1.2e+02 Score=20.39 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=32.0
Q ss_pred CeeE--EeeecCCCCCCcceEEEEEEcCccCCcccccEEEecCCcccceeeCccceeeecCCceEecCCcccCCCCeEEE
Q 031288 68 DIVI--TQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKF 145 (162)
Q Consensus 68 DI~V--~Q~~TG~~v~G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~VsF 145 (162)
||.| ...+.-..++..-++.|+|.|.= .-+..++.+. .+.+...+ . .-.| ..|.+|++.++
T Consensus 3 DL~v~~~~~~~~~~~g~~~~i~~~V~N~G--~~~~~~~~v~--~~~~~~~~-----~-----~~~i---~~L~~g~~~~v 65 (101)
T PF07705_consen 3 DLTVSITVSPSNVVPGEPVTITVTVKNNG--TADAENVTVR--LYLDGNSV-----S-----TVTI---PSLAPGESETV 65 (101)
T ss_dssp -EEE-EEEC-SEEETTSEEEEEEEEEE-S--SS-BEEEEEE--EEETTEEE-----E-----EEEE---SEB-TTEEEEE
T ss_pred CEEEEEeeCCCcccCCCEEEEEEEEEECC--CCCCCCEEEE--EEECCcee-----c-----cEEE---CCcCCCcEEEE
Confidence 6666 22222222344455999999987 3345555554 11121111 1 1112 57888887666
Q ss_pred EEecCCc
Q 031288 146 QYANTFL 152 (162)
Q Consensus 146 ~YAw~~~ 152 (162)
++.|..+
T Consensus 66 ~~~~~~~ 72 (101)
T PF07705_consen 66 TFTWTPP 72 (101)
T ss_dssp EEEEE-S
T ss_pred EEEEEeC
Confidence 6666543
No 8
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=30.98 E-value=28 Score=23.86 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=20.3
Q ss_pred ceEEEEEEcCccCCcccccEEEecCCccc
Q 031288 84 PTYTVEIMNACETGCNISEIHLNCGWFSS 112 (162)
Q Consensus 84 Pef~VtI~N~C~~~C~~s~V~L~CgGF~S 112 (162)
-.-.|+|+++|+ .|+-..+-|+=..|..
T Consensus 38 ksV~v~V~D~Cp-~~~~~~lDLS~~aF~~ 65 (78)
T PF03330_consen 38 KSVTVTVVDRCP-GCPPNHLDLSPAAFKA 65 (78)
T ss_dssp CEEEEEEEEE-T-TSSSSEEEEEHHHHHH
T ss_pred CeEEEEEEccCC-CCcCCEEEeCHHHHHH
Confidence 567899999995 6888888777555544
No 9
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=30.92 E-value=31 Score=30.32 Aligned_cols=19 Identities=37% Similarity=0.272 Sum_probs=17.1
Q ss_pred cCCCCCCcceEEEEEEcCc
Q 031288 76 TGIMPNGIPTYTVEIMNAC 94 (162)
Q Consensus 76 TG~~v~G~Pef~VtI~N~C 94 (162)
|.+++.|-|||+|++.|.=
T Consensus 206 Tsk~v~g~PqYtv~fsnwk 224 (262)
T COG3900 206 TSKDVPGEPQYTVVFSNWK 224 (262)
T ss_pred EecccCCCCcEEEEEcccc
Confidence 6778899999999999977
No 10
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=26.24 E-value=1.5e+02 Score=19.79 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.6
Q ss_pred cCCCCCCcceEEEEEEcCccCCcccccEEEec
Q 031288 76 TGIMPNGIPTYTVEIMNACETGCNISEIHLNC 107 (162)
Q Consensus 76 TG~~v~G~Pef~VtI~N~C~~~C~~s~V~L~C 107 (162)
....++..-+|.++|.|.= .-+..||.|.-
T Consensus 35 ~~~~~Gd~v~ytitvtN~G--~~~a~nv~v~D 64 (76)
T PF01345_consen 35 STANPGDTVTYTITVTNTG--PAPATNVVVTD 64 (76)
T ss_pred CcccCCCEEEEEEEEEECC--CCeeEeEEEEE
Confidence 3334566778999999987 67888888764
No 11
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=23.83 E-value=57 Score=21.67 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=19.0
Q ss_pred CCcccCCCCeEEEEEecCCcccccc
Q 031288 133 EGKPLVSGGTLKFQYANTFLYPLTV 157 (162)
Q Consensus 133 ~G~PI~~g~~VsF~YAw~~~f~l~p 157 (162)
.|+|+..|+.|.|.+. ...++|.+
T Consensus 15 ~~~pv~~Gd~i~~~~~-~~~~~~~V 38 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPFF-GQALPFKV 38 (64)
T ss_dssp TTEEEETT-EEEEEET-TEEEEEEE
T ss_pred cCCCccCCCEEEEEeC-CcEEEEEE
Confidence 4689999999999996 57777777
No 12
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=22.50 E-value=2.4e+02 Score=21.14 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=47.9
Q ss_pred CCCCeeEEeeecCCCCCCcceEEEEEEcCccCCcccccEEEecCCcccceeeCccceeeecCCceEecCCcccCCCCeEE
Q 031288 65 TKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLK 144 (162)
Q Consensus 65 s~sDI~V~Q~~TG~~v~G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~Vs 144 (162)
.+.||.|.=...+. |...|+....=.+. +||..|-=|....--|+.+=+.+.-...|++.-.... .++..
T Consensus 27 ~k~dikV~F~e~~~---g~~~WE~~~~f~~~------dv~q~aiv~~tP~y~~~~i~~pV~V~i~L~r~~~~~~-S~~~~ 96 (101)
T cd00602 27 NKPDIKVWFGEKGP---GETVWEAEAMFRQE------DVRQVAIVFKTPPYHNKWITRPVQVPIQLVRPDDRKR-SEPLT 96 (101)
T ss_pred CCCCCEEEEEecCC---CCCeEEEEEEECHH------HceEeEEEecCCCcCCCCccccEEEEEEEEeCCCCee-cCCcC
Confidence 34688876555443 88899999888772 3455555566555556666555544567787734343 47899
Q ss_pred EEEe
Q 031288 145 FQYA 148 (162)
Q Consensus 145 F~YA 148 (162)
|+|-
T Consensus 97 FtY~ 100 (101)
T cd00602 97 FTYT 100 (101)
T ss_pred eEEc
Confidence 9993
No 13
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=21.93 E-value=1.2e+02 Score=24.92 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=35.1
Q ss_pred cccccEEEec--CCcccceeeCccceeeecCCceEecC--CcccCCCCeEEEEEecC
Q 031288 98 CNISEIHLNC--GWFSSAHLINHKILKRLSYNDCLVNE--GKPLVSGGTLKFQYANT 150 (162)
Q Consensus 98 C~~s~V~L~C--gGF~Sa~~VDP~ifrrl~~d~CLVN~--G~PI~~g~~VsF~YAw~ 150 (162)
|.=+-|+|-| .|.++ +|-++|+++.+.=++.. |+|+.....+.|+-...
T Consensus 71 ~YGs~V~Lv~~~TGv~s----ppliIRKVdk~~~~ld~~~~ePVSQLhK~Afq~~d~ 123 (158)
T PF09270_consen 71 HYGSTVVLVCSVTGVSS----PPLIIRKVDKQQVVLDAASDEPVSQLHKCAFQMIDG 123 (158)
T ss_dssp BTTSEEEEEETTT-EBE----EEEEEEEEETTEEESSGGTTSB-BTTEEEEEEETTS
T ss_pred ecCCEEEEEECCCCccc----CceEEEEecCCceeecccccchhhhhheeeEEecCC
Confidence 4445677777 45554 58899999866555555 89999999999998874
Done!