Query 031288
Match_columns 162
No_of_seqs 105 out of 136
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idu_A Uncharacterized protein 31.7 1.5E+02 0.0052 21.7 7.0 69 65-151 15-84 (127)
2 3d30_A YOAJ, expansin like pro 25.2 20 0.00067 28.5 0.7 37 85-122 64-100 (208)
3 3vhs_A ATPase wrnip1; zinc fin 21.8 20 0.00069 20.8 0.1 8 82-89 1-8 (29)
4 3e8v_A Possible transglutamina 20.6 64 0.0022 22.7 2.5 21 132-153 10-30 (82)
5 1b4r_A Protein (PKD1_human); P 20.3 56 0.0019 22.3 2.2 19 132-150 34-54 (80)
6 1yew_A Particulate methane mon 18.5 2.8E+02 0.0097 24.6 6.7 62 78-146 260-331 (382)
7 2qsv_A Uncharacterized protein 17.5 2E+02 0.0068 22.1 5.1 40 72-112 124-164 (220)
8 2hcz_X Beta-expansin 1A; domai 17.1 77 0.0026 25.9 2.6 25 86-112 89-115 (245)
9 3iag_C Recombining binding pro 15.6 1.8E+02 0.0062 26.1 4.8 49 98-150 217-267 (422)
10 1n10_A PHL P I, pollen allerge 14.9 87 0.003 25.5 2.4 26 86-113 89-116 (241)
No 1
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=31.74 E-value=1.5e+02 Score=21.68 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=39.6
Q ss_pred CCCCeeEEeeecCCCCCCcc-eEEEEEEcCccCCcccccEEEecCCcccceeeCccceeeecCCceEecCCcccCCCCeE
Q 031288 65 TKEDIVITQGPTGIMPNGIP-TYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTL 143 (162)
Q Consensus 65 s~sDI~V~Q~~TG~~v~G~P-ef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~V 143 (162)
...|+.|....-.....|.+ ++.|+|.|.= ..+..+..|.- -+|=.+... ....|.+|++-
T Consensus 15 ~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G--~~~a~~~~V~l-------yvng~~v~t---------~~v~La~G~s~ 76 (127)
T 3idu_A 15 EFPDLTVEIKGPDVVGVNKLAEYEVHVKNLG--GIGVPSTKVRV-------YINGTLYKN---------WTVSLGPKEEK 76 (127)
T ss_dssp SSCCEEEEEESCSEECTTCCEEEEEEEEECS--SSCEEEEEEEE-------EETTEEEEE---------EEEEECTTCEE
T ss_pred cCCCeEEEecCCCcccCCCEEEEEEEEEECC--CCccCCcEEEE-------EECCEEEee---------EEeccCCCCeE
Confidence 45678774432232234555 4999999987 56666555433 122222211 11258889987
Q ss_pred EEEEecCC
Q 031288 144 KFQYANTF 151 (162)
Q Consensus 144 sF~YAw~~ 151 (162)
+|.|.|..
T Consensus 77 tv~f~~~~ 84 (127)
T 3idu_A 77 VLTFNWTP 84 (127)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 77777753
No 2
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=25.24 E-value=20 Score=28.52 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=27.8
Q ss_pred eEEEEEEcCccCCcccccEEEecCCcccceeeCcccee
Q 031288 85 TYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILK 122 (162)
Q Consensus 85 ef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifr 122 (162)
.=.|+|++.|+ .|+..++-|+=..|...-..+..++.
T Consensus 64 sv~V~v~D~CP-~C~~~~~DLS~~aF~~la~~~~G~i~ 100 (208)
T 3d30_A 64 KTTVYVTDLYP-EGARGALDLSPNAFRKIGNMKDGKIN 100 (208)
T ss_dssp EEEEEEEEECT-TCCTTCEEECHHHHHHHSCGGGSSEE
T ss_pred cEEEEEEECCC-CCCCCeEECCHHHHHHhcccCCCEEE
Confidence 35799999996 79999999988888764444555554
No 3
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.82 E-value=20 Score=20.76 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=3.3
Q ss_pred CcceEEEE
Q 031288 82 GIPTYTVE 89 (162)
Q Consensus 82 G~Pef~Vt 89 (162)
|-|||+|+
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 56999995
No 4
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=20.56 E-value=64 Score=22.70 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.0
Q ss_pred cCCcccCCCCeEEEEEecCCcc
Q 031288 132 NEGKPLVSGGTLKFQYANTFLY 153 (162)
Q Consensus 132 N~G~PI~~g~~VsF~YAw~~~f 153 (162)
.+|+|++ |..|.|.|-|...|
T Consensus 10 ~~GkPV~-gA~Vefe~yNyae~ 30 (82)
T 3e8v_A 10 AEGQPVA-DATVEFKVYNYAEF 30 (82)
T ss_dssp TTSCBCT-TCEEEEEEEETTEE
T ss_pred CCCCCCC-CCEEEEEEEEchhe
Confidence 5899995 88999999886544
No 5
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=20.32 E-value=56 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=8.5
Q ss_pred cCCccc--CCCCeEEEEEecC
Q 031288 132 NEGKPL--VSGGTLKFQYANT 150 (162)
Q Consensus 132 N~G~PI--~~g~~VsF~YAw~ 150 (162)
.||.+. ..+..++-+|+-.
T Consensus 34 GDGs~~~~s~~~~~tHtY~~~ 54 (80)
T 1b4r_A 34 GDGSAEVDAAGPAASHRYVLP 54 (80)
T ss_dssp CSSCCEEEEETTEEEEEECSS
T ss_pred CCCCcccccCCCCCEEECCCC
Confidence 444442 3344455555443
No 6
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=18.51 E-value=2.8e+02 Score=24.58 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=41.0
Q ss_pred CCCCCcceEEEEEEcCccCCcccccEEEecCCcccc--eeeCccceeeec-CCc-------eEecCCcccCCCCeEEEE
Q 031288 78 IMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSA--HLINHKILKRLS-YND-------CLVNEGKPLVSGGTLKFQ 146 (162)
Q Consensus 78 ~~v~G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~Sa--~~VDP~ifrrl~-~d~-------CLVN~G~PI~~g~~VsF~ 146 (162)
++++.--.+.|+|+|+- .=|+ +=+.|+++ .=+||.+..--. +-+ =.|+|-.||.+|++-+++
T Consensus 260 ~vpgR~l~~~~~VtN~g--~~pv-----rlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~ 331 (382)
T 1yew_A 260 RVPGRAMRMKLTITNHG--NSPI-----RLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVD 331 (382)
T ss_dssp ESSCSEEEEEEEEEECS--SSCE-----EEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEE
T ss_pred ecCCcEEEEEEEEEcCC--CCce-----EeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEE
Confidence 34556677999999987 3333 44677654 578888855211 112 346677799999997774
No 7
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=17.51 E-value=2e+02 Score=22.14 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred EeeecCCCCCCc-ceEEEEEEcCccCCcccccEEEecCCccc
Q 031288 72 TQGPTGIMPNGI-PTYTVEIMNACETGCNISEIHLNCGWFSS 112 (162)
Q Consensus 72 ~Q~~TG~~v~G~-Pef~VtI~N~C~~~C~~s~V~L~CgGF~S 112 (162)
..-.-|.+. |. -+..++|+|.-...=.+.+|.-+|+.+.-
T Consensus 124 ~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~scgct~~ 164 (220)
T 2qsv_A 124 TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRNPALTA 164 (220)
T ss_dssp CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECSTTEEE
T ss_pred eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCCCCEee
Confidence 334446666 54 45899999999766667788888887653
No 8
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=17.07 E-value=77 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.042 Sum_probs=20.3
Q ss_pred EEEEEEcCccCCc--ccccEEEecCCccc
Q 031288 86 YTVEIMNACETGC--NISEIHLNCGWFSS 112 (162)
Q Consensus 86 f~VtI~N~C~~~C--~~s~V~L~CgGF~S 112 (162)
-.|+|++.| .| +..++-|+=..|..
T Consensus 89 v~V~VtD~C--~C~~~~~hfDLS~~AF~~ 115 (245)
T 2hcz_X 89 VTVYITDMN--YEPIAPYHFDLSGKAFGS 115 (245)
T ss_dssp EEEEEEEEC--CCTTSSSEEEECHHHHHH
T ss_pred EEEEEEecc--CCCCCCccEEcCHHHHHH
Confidence 589999999 68 67788888788864
No 9
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=15.65 E-value=1.8e+02 Score=26.15 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=38.3
Q ss_pred cccccEEEec--CCcccceeeCccceeeecCCceEecCCcccCCCCeEEEEEecC
Q 031288 98 CNISEIHLNC--GWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANT 150 (162)
Q Consensus 98 C~~s~V~L~C--gGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~VsF~YAw~ 150 (162)
|.=+-|+|-| .|.++ +|-++|+++-+.=++.++.|+..-..+.|+-...
T Consensus 217 ~YGs~V~Lv~~~TGv~s----ppliIRKVdk~~~~l~~~dpVSQLhK~Afq~~d~ 267 (422)
T 3iag_C 217 HYGQTVKLVCSVTGMAL----PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDT 267 (422)
T ss_dssp BTTCEEEEEETTTCCBC----CCEEEEEEETTEEESSCCSBCBTTCEEEEEETTS
T ss_pred EeCCEEEEEECCCcccC----CceEEEEEcCCcEecCCCCchhhhhhheeEecCC
Confidence 4445688888 45544 6889999987777789999999999999987654
No 10
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=14.85 E-value=87 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=21.0
Q ss_pred EEEEEEcCccCCc--ccccEEEecCCcccc
Q 031288 86 YTVEIMNACETGC--NISEIHLNCGWFSSA 113 (162)
Q Consensus 86 f~VtI~N~C~~~C--~~s~V~L~CgGF~Sa 113 (162)
=.|+|++.| .| +..++.|+=..|...
T Consensus 89 v~V~VtD~C--~C~~~~~hfDLS~~AF~~i 116 (241)
T 1n10_A 89 VVVHITDDN--EEPIAPYHFDLSGHAFGAM 116 (241)
T ss_dssp EEEEEEEEC--SSCSSSSEEEEEHHHHHTT
T ss_pred EEEEEeEec--CCCCCCcceecCHHHHHHh
Confidence 489999999 79 567888888888753
Done!