Query 031288
Match_columns 162
No_of_seqs 105 out of 136
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 19:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b4ra_ b.1.3.1 (A:) Polycyste 24.5 19 0.0014 22.9 2.2 12 135-146 8-19 (80)
2 d3brda3 b.42.7.1 (A:381-541) D 21.5 45 0.0033 24.5 4.0 49 98-150 70-123 (161)
3 d1neia_ d.253.1.1 (A:) Hypothe 19.2 25 0.0018 22.1 1.7 32 82-120 2-34 (60)
4 d1cf1a2 b.1.18.11 (A:183-393) 18.1 85 0.0062 22.9 5.0 75 69-148 23-97 (211)
5 d2gu3a1 d.17.1.6 (A:99-161) Un 15.8 37 0.0027 21.1 2.0 24 70-94 19-42 (63)
6 d1twfi2 g.41.3.1 (I:50-121) RB 14.7 1.4E+02 0.01 18.6 5.4 31 58-88 23-53 (72)
7 d1exta3 g.24.1.1 (A:116-172) T 10.5 1.2E+02 0.0084 18.6 3.1 34 94-130 2-36 (57)
8 d1tv8a_ c.1.28.3 (A:) Molybden 10.2 43 0.0031 24.2 1.1 15 87-101 15-29 (327)
9 d1v43a2 b.40.6.3 (A:304-373) H 9.8 1.2E+02 0.0086 17.5 3.0 29 129-157 35-63 (70)
10 d1w8oa1 b.1.18.2 (A:403-505) S 9.0 1.8E+02 0.013 18.5 4.0 28 80-107 15-42 (103)
No 1
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.49 E-value=19 Score=22.91 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=5.9
Q ss_pred cccCCCCeEEEE
Q 031288 135 KPLVSGGTLKFQ 146 (162)
Q Consensus 135 ~PI~~g~~VsF~ 146 (162)
.||..|+++.|.
T Consensus 8 ~p~~~G~~v~F~ 19 (80)
T d1b4ra_ 8 GPLASGQLAAFH 19 (80)
T ss_dssp SCCBSSEEEEEE
T ss_pred CCccCCCeEEEE
Confidence 344455555554
No 2
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=21.52 E-value=45 Score=24.49 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=35.1
Q ss_pred cccccEEEec--CCcccceeeCccceeeecCCceEecC---CcccCCCCeEEEEEecC
Q 031288 98 CNISEIHLNC--GWFSSAHLINHKILKRLSYNDCLVNE---GKPLVSGGTLKFQYANT 150 (162)
Q Consensus 98 C~~s~V~L~C--gGF~Sa~~VDP~ifrrl~~d~CLVN~---G~PI~~g~~VsF~YAw~ 150 (162)
|.=+-|+|-| .|.++ +|-++|+++.+.=++.+ +.|+..-..+.|+--.+
T Consensus 70 ~Ygs~V~Lv~~~TGv~s----ppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~dt 123 (161)
T d3brda3 70 YYGSVVKLVDSVTGIAL----PRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDN 123 (161)
T ss_dssp BTTCEEEEEETTTCCBC----CCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESSC
T ss_pred EeCCEEEEEEcCCCccC----CCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCCC
Confidence 3444578888 56666 68999998866555665 47999888898876443
No 3
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=19.16 E-value=25 Score=22.06 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=19.6
Q ss_pred CcceEEEEEEcCccCCcccccEEEecCCccc-ceeeCccc
Q 031288 82 GIPTYTVEIMNACETGCNISEIHLNCGWFSS-AHLINHKI 120 (162)
Q Consensus 82 G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~S-a~~VDP~i 120 (162)
|+-.|.|||+|+-. +|-+.= .|++ .++.||.+
T Consensus 2 gk~~~~lTvTNnnN------GVSVD~-e~~~~~~L~~p~~ 34 (60)
T d1neia_ 2 GKATYTVTVTNNSN------GVSVDY-ETETPMTLLVPEV 34 (60)
T ss_dssp CCCCEEEEEEETTT------CCEEEE-ECCCSGGGTCHHH
T ss_pred CcceEEEEEEeCCC------ceEecc-cccCHHHhcChHH
Confidence 67889999999773 233332 2333 35666653
No 4
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=18.06 E-value=85 Score=22.91 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=44.2
Q ss_pred eeEEeeecCCCCCCcceEEEEEEcCccCCcccccEEEecCCcccceeeCccceeeecCCceEecCCcccCCCCeEEEEEe
Q 031288 69 IVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYA 148 (162)
Q Consensus 69 I~V~Q~~TG~~v~G~Pef~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~VsF~YA 148 (162)
++++-.+.|-.+|-.-...|+|.|.+ .=.+..|++.=-.......-.|..+++. ......++++.++++.+.+|+
T Consensus 23 l~~~ldr~~Y~~Ge~I~v~v~i~N~s--~~~v~~i~~~l~Q~~~~~~~s~~~~~~~---Va~~e~~~~~~~~~t~~k~~~ 97 (211)
T d1cf1a2 23 LAVSLSKEIYYHGEPIPVTVAVTNST--EKTVKKIKVLVEQVTNVVLYSSDYYIKT---VAAEEAQEKVPPNSSLTKTLT 97 (211)
T ss_dssp EEEEESCSEEETTCCEEEEEEEEECS--SSCEEEEEEEEEEEEEECSSSCCEEEEE---EEEEEESCCBCTTEEEEEEEE
T ss_pred EEEEECCceEcCCCEEEEEEEEEcCC--CcceeeEEEEEEEEEEEEEecCCceEEE---EEEEEecCccCCCcceEEEEE
Confidence 55555566654433334899999988 4467777765544444444455555531 223445567777777666665
No 5
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=15.76 E-value=37 Score=21.12 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=17.5
Q ss_pred eEEeeecCCCCCCcceEEEEEEcCc
Q 031288 70 VITQGPTGIMPNGIPTYTVEIMNAC 94 (162)
Q Consensus 70 ~V~Q~~TG~~v~G~Pef~VtI~N~C 94 (162)
.|...+-|. .+|+|.|+|+-.|.=
T Consensus 19 ki~~v~LG~-~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 19 KQKEVHLAR-EGNVLLWEVTYLDKE 42 (63)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEECTT
T ss_pred eeeEEeeee-ECCEEEEEEEEEeCC
Confidence 455555553 579999999999854
No 6
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.72 E-value=1.4e+02 Score=18.62 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.4
Q ss_pred cccCCCCCCCCeeEEeeecCCCCCCcceEEE
Q 031288 58 ERWGERCTKEDIVITQGPTGIMPNGIPTYTV 88 (162)
Q Consensus 58 ~~~~~~Cs~sDI~V~Q~~TG~~v~G~Pef~V 88 (162)
......|........|.++...-.+...|-+
T Consensus 23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~ 53 (72)
T d1twfi2 23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFV 53 (72)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEE
T ss_pred CCCCCCCCCCeEEEEEeecCccCCCceEEEE
Confidence 3466789999999999999776678877777
No 7
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.46 E-value=1.2e+02 Score=18.63 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=23.2
Q ss_pred ccCCcccccEEEecCCccccee-eCccceeeecCCceE
Q 031288 94 CETGCNISEIHLNCGWFSSAHL-INHKILKRLSYNDCL 130 (162)
Q Consensus 94 C~~~C~~s~V~L~CgGF~Sa~~-VDP~ifrrl~~d~CL 130 (162)
| +.|.-.-|++.|.++|.++= -.+..|- .++.|+
T Consensus 2 C-SlC~NGTV~ipC~e~q~TvC~ch~gFfl--~~~eCv 36 (57)
T d1exta3 2 C-SLCLNGTVHLSCQEKQNTVCTCHAGFFL--RENECV 36 (57)
T ss_dssp C-CCCTTEEEEECCBTTBCCEEEECTTEEE--ETTEEE
T ss_pred C-ccccCCeEEeccccccCceeecccccee--cCCceE
Confidence 6 47899999999999997643 3344443 345554
No 8
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=10.17 E-value=43 Score=24.17 Aligned_cols=15 Identities=13% Similarity=0.627 Sum_probs=12.5
Q ss_pred EEEEEcCccCCcccc
Q 031288 87 TVEIMNACETGCNIS 101 (162)
Q Consensus 87 ~VtI~N~C~~~C~~s 101 (162)
.++|+|+|+-.|+..
T Consensus 15 ~ieiT~~CNlrC~~C 29 (327)
T d1tv8a_ 15 RLSVTDRCNFRCDYC 29 (327)
T ss_dssp EEECCSCCSCCCTTT
T ss_pred EEEeccccCCcCcCC
Confidence 499999999888864
No 9
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.77 E-value=1.2e+02 Score=17.52 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.1
Q ss_pred eEecCCcccCCCCeEEEEEecCCcccccc
Q 031288 129 CLVNEGKPLVSGGTLKFQYANTFLYPLTV 157 (162)
Q Consensus 129 CLVN~G~PI~~g~~VsF~YAw~~~f~l~p 157 (162)
..+....++..|++|.|....+..+-|.+
T Consensus 35 ~~~~~~~~~~~g~~i~l~~d~~~~~lFD~ 63 (70)
T d1v43a2 35 VKLPGHIPIEPGREVKVIMDLDMIHVFDK 63 (70)
T ss_dssp EEEESCCCCCTTCEEEEEEEGGGCEEEET
T ss_pred EEECCCCCCCCCCEEEEEECcccEEEEcc
Confidence 44566668888999999999888887766
No 10
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=9.02 E-value=1.8e+02 Score=18.53 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.2
Q ss_pred CCCcceEEEEEEcCccCCcccccEEEec
Q 031288 80 PNGIPTYTVEIMNACETGCNISEIHLNC 107 (162)
Q Consensus 80 v~G~Pef~VtI~N~C~~~C~~s~V~L~C 107 (162)
++..-+|.|+|+|.....|.-..+.+.-
T Consensus 15 pG~~~~~~vtVtN~g~~~~~~~~~~~~~ 42 (103)
T d1w8oa1 15 PGQQVTVPVAVTNQSGIAVPKPSLQLDA 42 (103)
T ss_dssp TTCEEEEEEEEECCSSSCBSSCEEEEEC
T ss_pred CCCeEEEEEEEEeCCCCceeeeeEEEcC
Confidence 4566789999999997666655555554
Done!