BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031290
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex
Aeolicus: Northeast Structural Genomics Consortium
Target Qr6
Length = 124
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 57 MTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKL 116
+TD ++ +K++ A E + +LR+ V GGCSGFQYA D + D +FE DGVK+
Sbjct: 12 VTDKAVEEIKKV-AQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70
Query: 117 VVDNISYDFVKGATVDYVEELIRSAFVVRH 146
V+D S +V GA +DYV + + F +R+
Sbjct: 71 VIDPFSMPYVNGAELDYVVDFMGGGFTIRN 100
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
+ TD ++K L SE + LR+ + GGCSGFQY F D K+N D EK GV
Sbjct: 9 LTFTDAAANKVKSL-ISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
+LV+D +S ++ G TVDY E L S F V +
Sbjct: 68 QLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNN 99
>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative)
pdb|1R94|B Chain B, Crystal Structure Of Isca (mercury Derivative)
pdb|1R95|A Chain A, Crystal Structure Of Isca (Native)
pdb|1R95|B Chain B, Crystal Structure Of Isca (Native)
Length = 118
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
SI ++D+ R+ A+ LRLGV T GCSG Y + + P+D +FE G
Sbjct: 2 SITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAF 142
VK+VVD S F+ G +D+V+E + F
Sbjct: 60 VKVVVDGKSLQFLDGTQLDFVKEGLNEGF 88
>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A
pdb|1S98|B Chain B, E.Coli Isca Crystal Structure To 2.3 A
Length = 107
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
SI ++D+ R+ A+ LRLGV T GCSG Y + + P+D +FE G
Sbjct: 2 SITLSDSAAARVNTFLANRGK--GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAF 142
VK+VVD S F+ G +D+V+E + F
Sbjct: 60 VKVVVDGKSMQFLDGTQLDFVKEGLNEGF 88
>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
Length = 145
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 80 LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIR 139
+RLGV+ GC+GF Y D + + DD +FE DG KL V + F+ G VD+V E +
Sbjct: 64 VRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLN 123
Query: 140 SAF 142
F
Sbjct: 124 QIF 126
>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|B Chain B, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|C Chain C, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|D Chain D, Crystal Structure Of Isca With The [2fe-2s] Cluster
Length = 112
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 55 IHMTDNFIKRMKELQASETSDNKA-MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
+ +T I+ ++ LQ +A +LR+ V+ C ++Y L + P D + + G
Sbjct: 2 VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAF 142
+ + + + ++G VDY+E+L+ AF
Sbjct: 62 WTIAIAAEAAELLRGLRVDYIEDLMGGAF 90
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 60 NFIKRMKELQASETSD-NKAMLRLGVETGGCSGFQYAFDLDYKINP 104
+++ + L A E + + M RL ++T G SGF Y F+ Y+ P
Sbjct: 126 QLVQKWERLNADEHIEVPEDMTRLTLDTIGLSGFNYRFNSFYRDQP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,461,377
Number of Sequences: 62578
Number of extensions: 121584
Number of successful extensions: 410
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 8
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)