Query 031290
Match_columns 162
No_of_seqs 189 out of 1059
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03082 Iron-sulfur cluster a 100.0 1.1E-38 2.5E-43 250.1 10.7 149 1-153 5-154 (163)
2 COG0316 sufA Fe-S cluster asse 100.0 1.2E-31 2.6E-36 198.2 12.2 101 52-153 2-102 (110)
3 PRK13623 iron-sulfur cluster i 100.0 8.9E-30 1.9E-34 188.7 11.8 101 52-153 7-107 (115)
4 PRK09502 iscA iron-sulfur clus 100.0 1.2E-29 2.7E-34 186.0 11.5 99 53-153 1-99 (107)
5 PRK09504 sufA iron-sulfur clus 100.0 1.9E-29 4.1E-34 189.3 11.6 102 50-153 13-114 (122)
6 TIGR01997 sufA_proteo FeS asse 100.0 1.2E-28 2.5E-33 180.7 11.7 98 54-153 2-99 (107)
7 TIGR02011 IscA iron-sulfur clu 100.0 2.6E-28 5.6E-33 178.3 11.1 97 55-153 1-97 (105)
8 TIGR01911 HesB_rel_seleno HesB 99.9 1.5E-27 3.2E-32 171.2 10.2 91 53-145 2-92 (92)
9 PRK11190 Fe/S biogenesis prote 99.9 5.2E-27 1.1E-31 188.4 12.1 96 54-151 1-98 (192)
10 TIGR00049 Iron-sulfur cluster 99.9 2.1E-26 4.6E-31 167.1 11.1 97 56-153 1-97 (105)
11 KOG1119 Mitochondrial Fe-S clu 99.9 2.2E-26 4.8E-31 181.7 10.2 141 2-150 45-186 (199)
12 TIGR03341 YhgI_GntY IscR-regul 99.9 1.2E-25 2.6E-30 180.2 12.0 94 55-150 1-96 (190)
13 KOG1120 Fe-S cluster biosynthe 99.9 7.8E-25 1.7E-29 164.0 9.7 105 47-153 22-126 (134)
14 PF01521 Fe-S_biosyn: Iron-sul 99.8 1.2E-20 2.5E-25 138.1 11.4 97 53-153 1-108 (112)
15 COG4841 Uncharacterized protei 99.6 9.3E-16 2E-20 108.6 8.0 88 53-144 1-94 (95)
16 COG4918 Uncharacterized protei 98.8 3.4E-08 7.4E-13 72.0 7.3 90 53-145 1-92 (114)
17 COG3564 Uncharacterized protei 96.9 0.011 2.4E-07 43.2 9.0 94 53-156 5-104 (116)
18 PF05610 DUF779: Protein of un 96.0 0.04 8.7E-07 39.9 7.0 72 82-157 14-91 (95)
19 COG5134 Uncharacterized conser 45.7 60 0.0013 27.2 5.5 55 63-120 59-113 (272)
20 KOG3348 BolA (bacterial stress 44.2 67 0.0015 22.8 4.8 38 61-101 4-41 (85)
21 KOG4777 Aspartate-semialdehyde 41.6 22 0.00047 30.8 2.4 91 53-149 54-152 (361)
22 cd03063 TRX_Fd_FDH_beta TRX-li 38.2 41 0.00089 23.9 3.1 26 61-92 19-44 (92)
23 PF11858 DUF3378: Domain of un 33.6 62 0.0013 22.5 3.3 38 53-90 3-41 (81)
24 cd01234 PH_CADPS CADPS (Ca2+-d 32.5 19 0.00042 26.8 0.6 19 120-138 46-64 (117)
25 PF14135 DUF4302: Domain of un 23.2 2E+02 0.0044 23.4 5.2 41 59-101 15-56 (235)
26 PF03852 Vsr: DNA mismatch end 20.1 97 0.0021 21.5 2.2 31 91-121 35-65 (75)
No 1
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=100.00 E-value=1.1e-38 Score=250.07 Aligned_cols=149 Identities=68% Similarity=0.968 Sum_probs=123.7
Q ss_pred CchhhhhhhhHHHHHHHhhhcccccCCccchhhhcccCCCCCCCCCCCCCCCceeeeCHHHHHHHHHHHhccCCCCCceE
Q 031290 1 MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAML 80 (162)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~L 80 (162)
|||+|+||++|++++|+|+|||+|.+++++.....+.+ ...+.+....+.|+|||+|+++|++++++++..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~L 80 (163)
T PLN03082 5 MSRSLLRRVAPLLAGRIRQNHRLLNFSSSSALKEASTS----SSSPSSSASLDAVHMTDNCIRRLKELQTSEPSAEDKML 80 (163)
T ss_pred cchhhhhccccceeecccchhhHHHhhhhhhhhhhccc----ccCccccccCCceEECHHHHHHHHHHHHhCCCCCCceE
Confidence 68999999999999999999999965333221112111 11122223346899999999999999987653235789
Q ss_pred EEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEeeecCCcceEEE-ecCccceeE
Q 031290 81 RLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV-RHFLLLSVF 153 (162)
Q Consensus 81 Rl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~e~~~g~gF~i-~np~~~~~~ 153 (162)
||+|++|||+||+|.|.++++++++|.+++.+|++|+||+.++.||+|++|||++++++++|+| +|||...-|
T Consensus 81 Rl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f~~NPna~~~C 154 (163)
T PLN03082 81 RLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGC 154 (163)
T ss_pred EEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEEecCCCCCCCc
Confidence 9999999999999999999988899999999999999999999999999999999999999999 999987655
No 2
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=198.21 Aligned_cols=101 Identities=44% Similarity=0.708 Sum_probs=95.7
Q ss_pred CceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290 52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (162)
Q Consensus 52 ~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI 131 (162)
+++|+|||+|++++++++++++ .++.+|||+|+++||+|++|.|.|+++++++|.+++.+|++++||+.++.||+|++|
T Consensus 2 ~~~itlT~~Aa~~v~~ll~~~~-~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~I 80 (110)
T COG0316 2 AMMITLTDAAAARVKALLAKEG-EENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEI 80 (110)
T ss_pred CCceeeCHHHHHHHHHHHHhcc-CCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEE
Confidence 4799999999999999999885 357899999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCcceEEEecCccceeE
Q 031290 132 DYVEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 132 Dy~e~~~g~gF~i~np~~~~~~ 153 (162)
||+++++|++|+|+|||...-|
T Consensus 81 Dyv~~~~g~~F~~~NPNA~~~C 102 (110)
T COG0316 81 DYVEDLLGSGFTFKNPNAKSSC 102 (110)
T ss_pred EEEEcCcCCceEEECCCCCccc
Confidence 9999999999999999987654
No 3
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=99.96 E-value=8.9e-30 Score=188.68 Aligned_cols=101 Identities=40% Similarity=0.608 Sum_probs=93.8
Q ss_pred CceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290 52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (162)
Q Consensus 52 ~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI 131 (162)
.|+|+||++|+++|+++++.++ .++.+|||+|+++||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|
T Consensus 7 ~~~i~iT~~A~~~i~~~~~~~~-~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~I 85 (115)
T PRK13623 7 PLPLVFTDAAAAKVKELIEEEG-NPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEV 85 (115)
T ss_pred CcceEECHHHHHHHHHHHhhCC-CCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEE
Confidence 4899999999999999997654 245679999999999999999999998899999999999999999999999999999
Q ss_pred EeeecCCcceEEEecCccceeE
Q 031290 132 DYVEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 132 Dy~e~~~g~gF~i~np~~~~~~ 153 (162)
||++++.+++|+|+|||..+-|
T Consensus 86 Dy~~~~~~~~F~f~NPn~~~~C 107 (115)
T PRK13623 86 DYTEGLEGSRFVIKNPNAKTTC 107 (115)
T ss_pred EeecCCCcceEEEECCCCCcCC
Confidence 9999999999999999987765
No 4
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=99.96 E-value=1.2e-29 Score=185.97 Aligned_cols=99 Identities=33% Similarity=0.551 Sum_probs=92.5
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID 132 (162)
|+|+|||+|+++|++++++++ +..+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++||
T Consensus 1 m~i~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~ID 78 (107)
T PRK09502 1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD 78 (107)
T ss_pred CeEEECHHHHHHHHHHHhCcC--CCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEE
Confidence 579999999999999998664 356899999999999999999998889999999999999999999999999999999
Q ss_pred eeecCCcceEEEecCccceeE
Q 031290 133 YVEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 133 y~e~~~g~gF~i~np~~~~~~ 153 (162)
|++++.+++|+|+|||...-|
T Consensus 79 y~~~~~~~~F~f~NPna~~~C 99 (107)
T PRK09502 79 FVKEGLNEGFKFTNPNVKDEC 99 (107)
T ss_pred EeeCCCCceEEEECCCCCCcc
Confidence 999999999999999987665
No 5
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=189.34 Aligned_cols=102 Identities=30% Similarity=0.482 Sum_probs=95.1
Q ss_pred CCCceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCc
Q 031290 50 PSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGA 129 (162)
Q Consensus 50 ~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~ 129 (162)
-.||+|+|||+|+++|++++++++ +..+|||.|+++||+|++|.|.++++++++|++++.+|++|+||+.++.||+|+
T Consensus 13 ~~~~~I~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~ 90 (122)
T PRK09504 13 FAWQGLTLTPAAAAHIRELMAKQP--GMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGT 90 (122)
T ss_pred CCcCCEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCc
Confidence 457999999999999999998664 346899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCcceEEEecCccceeE
Q 031290 130 TVDYVEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 130 tIDy~e~~~g~gF~i~np~~~~~~ 153 (162)
+|||++++++++|+|.|||...-|
T Consensus 91 ~IDy~~~~~~~gF~f~NPna~~~C 114 (122)
T PRK09504 91 EVDYVREGLNQIFKFHNPKAQNEC 114 (122)
T ss_pred EEEeecCCCcceEEEECCCCCCCc
Confidence 999999999999999999987766
No 6
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=99.96 E-value=1.2e-28 Score=180.74 Aligned_cols=98 Identities=32% Similarity=0.510 Sum_probs=92.1
Q ss_pred eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEe
Q 031290 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY 133 (162)
Q Consensus 54 ~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy 133 (162)
+|+|||+|+++|++++++++ +..+|||+|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus 2 ~i~iT~~A~~~i~~l~~~~~--~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy 79 (107)
T TIGR01997 2 VITLTDAAAIHIRELVAKRP--EAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDF 79 (107)
T ss_pred eEEECHHHHHHHHHHHhcCC--CCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEE
Confidence 69999999999999998764 3468999999999999999999988899999999999999999999999999999999
Q ss_pred eecCCcceEEEecCccceeE
Q 031290 134 VEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 134 ~e~~~g~gF~i~np~~~~~~ 153 (162)
++++++++|+|+|||..+-|
T Consensus 80 ~~~~~~~~F~~~NPn~~~~C 99 (107)
T TIGR01997 80 VRTTLRQGFKFNNPNATSAC 99 (107)
T ss_pred EEcCCcceEEEECCCCCCcc
Confidence 99999999999999997655
No 7
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=99.95 E-value=2.6e-28 Score=178.33 Aligned_cols=97 Identities=33% Similarity=0.574 Sum_probs=90.6
Q ss_pred eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEee
Q 031290 55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYV 134 (162)
Q Consensus 55 ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~ 134 (162)
|+||++|+++|++++++++ +..+|||+|+++||+|++|.|.++++++++|++++.+|++|+||+.++.||+|++|||+
T Consensus 1 I~iT~~A~~~i~~~~~~~~--~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~ 78 (105)
T TIGR02011 1 ITLTDSAAARVNTFLANRG--KGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFV 78 (105)
T ss_pred CEECHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEe
Confidence 6899999999999998764 34689999999999999999999888999999999999999999999999999999999
Q ss_pred ecCCcceEEEecCccceeE
Q 031290 135 EELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 135 e~~~g~gF~i~np~~~~~~ 153 (162)
+++++++|+|+|||...-|
T Consensus 79 ~~~~~~~F~~~nPna~~~C 97 (105)
T TIGR02011 79 KEGLNEGFKFTNPNVKDEC 97 (105)
T ss_pred cCCCcceEEEECCCCCccC
Confidence 9999999999999987654
No 8
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.95 E-value=1.5e-27 Score=171.20 Aligned_cols=91 Identities=18% Similarity=0.320 Sum_probs=84.1
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID 132 (162)
.+|+|||+|+++|++++++++. +..+|||+|+++||+|++|.|.+++ ++++|.+++.+|++|+||+.+++||.|++||
T Consensus 2 ~~i~lT~~A~~~i~~ll~~~~~-~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iD 79 (92)
T TIGR01911 2 KIVAMSDDAYEEFKDFLKENDI-DNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIE 79 (92)
T ss_pred CceEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEE
Confidence 5899999999999999987653 3457999999999999999999987 4899999999999999999999999999999
Q ss_pred eeecCCcceEEEe
Q 031290 133 YVEELIRSAFVVR 145 (162)
Q Consensus 133 y~e~~~g~gF~i~ 145 (162)
|++++.+++|+|.
T Consensus 80 y~~~~~g~gF~~~ 92 (92)
T TIGR01911 80 CAEENFGAGFSLD 92 (92)
T ss_pred EecCCCCCcEEeC
Confidence 9999999999984
No 9
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.94 E-value=5.2e-27 Score=188.43 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=89.9
Q ss_pred eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEe--cCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (162)
Q Consensus 54 ~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI 131 (162)
||+||++|+++|++++++++ .+.+|||+|+++||+|++|+|.| +++++++|.+++.+|++|+||+.+++||+|++|
T Consensus 1 ~i~iTd~A~~~i~~ll~~~~--~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~I 78 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQE--EGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEI 78 (192)
T ss_pred CcEECHHHHHHHHHHHhcCC--CCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEE
Confidence 68999999999999998764 34689999999999999999999 677889999999999999999999999999999
Q ss_pred EeeecCCcceEEEecCccce
Q 031290 132 DYVEELIRSAFVVRHFLLLS 151 (162)
Q Consensus 132 Dy~e~~~g~gF~i~np~~~~ 151 (162)
||++++++++|+|+|||..+
T Consensus 79 Dyve~~~g~gF~f~NPNa~~ 98 (192)
T PRK11190 79 DFVTDQLGSQLTLKAPNAKM 98 (192)
T ss_pred EEeecCCCCceEEECCCCCC
Confidence 99999999999999999875
No 10
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=99.94 E-value=2.1e-26 Score=167.11 Aligned_cols=97 Identities=43% Similarity=0.700 Sum_probs=90.3
Q ss_pred eeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEeee
Q 031290 56 HMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVE 135 (162)
Q Consensus 56 tIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~e 135 (162)
+||++|+++|+++++.++. ++.+|||+++.+||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|||++
T Consensus 1 ~iT~~A~~~l~~~~~~~~~-~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~ 79 (105)
T TIGR00049 1 TLTDSAAKRIKALLAGEGE-PNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVE 79 (105)
T ss_pred CcCHHHHHHHHHHHhcCCC-CceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEee
Confidence 6899999999999987653 357899999999999999999999888899999999999999999999999999999999
Q ss_pred cCCcceEEEecCccceeE
Q 031290 136 ELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 136 ~~~g~gF~i~np~~~~~~ 153 (162)
+..+++|+|+|||....|
T Consensus 80 ~~~~~~f~i~nPn~~~~c 97 (105)
T TIGR00049 80 ELLGSGFTFTNPNAKGTC 97 (105)
T ss_pred cCCcceEEEECCCCCccC
Confidence 999999999999987765
No 11
>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-26 Score=181.70 Aligned_cols=141 Identities=43% Similarity=0.612 Sum_probs=123.9
Q ss_pred chhhhhhhhHHHHHHHhhhcccccCCccchhhhcccCCCCCCCCCCCCCCCceeeeCHHHHHHHHHHHhccCCCCCceEE
Q 031290 2 SRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLR 81 (162)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LR 81 (162)
.+++.+++++++..+++++++.. ...+++...++..+++..++..++ -.++|+|.|.++++++....+ ..||
T Consensus 45 ~~~~~~~~T~~~~~~l~e~~~~~---~f~s~~~~ke~~ss~~~~~e~~~~-~~~~lsds~~krl~EI~~~~p----e~LR 116 (199)
T KOG1119|consen 45 RRSFRRTVTTLAQFPLTELFIKK---AFYSASATKEAFSSSSRIPEKSPG-FNLHLSDSCSKRLKEIYENSP----EFLR 116 (199)
T ss_pred HHhhhchhhhhhhhhhHHHHHHh---hhccHHHHhhhhcCcccCCccCCC-ceEEehhHHHHHHHHHHhCCc----ceEE
Confidence 46788889999999988887776 456667777888888888777777 489999999999999987653 5899
Q ss_pred EEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEeeecCCcceEEEec-Cccc
Q 031290 82 LGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH-FLLL 150 (162)
Q Consensus 82 l~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~e~~~g~gF~i~n-p~~~ 150 (162)
|.|++|||+||||.|.+|...++||.+++.+|.+|+||..++.|++|+||||.+++++++|++-| |...
T Consensus 117 l~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~ELIrSsF~ivnNP~A~ 186 (199)
T KOG1119|consen 117 LTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNELIRSSFRIVNNPSAK 186 (199)
T ss_pred EEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHHhhhhheeecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999874 4443
No 12
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.93 E-value=1.2e-25 Score=180.23 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=87.6
Q ss_pred eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEe--cCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290 55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (162)
Q Consensus 55 ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID 132 (162)
|+||++|+++|++++++++ ++.+|||+|+++||+|++|+|.+ +++++++|.+++.+|++|+||+.+++||+|++||
T Consensus 1 I~IT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~ID 78 (190)
T TIGR03341 1 ITITEAAQAYLAKLLAKQN--EGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVID 78 (190)
T ss_pred CEECHHHHHHHHHHHhhCC--CCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEE
Confidence 6899999999999998764 34689999999999999999999 5678899999999999999999999999999999
Q ss_pred eeecCCcceEEEecCccc
Q 031290 133 YVEELIRSAFVVRHFLLL 150 (162)
Q Consensus 133 y~e~~~g~gF~i~np~~~ 150 (162)
|++++++++|+|+|||..
T Consensus 79 yve~~~g~gF~f~NPna~ 96 (190)
T TIGR03341 79 FVTDRMGGQLTLKAPNAK 96 (190)
T ss_pred EeecCCCceeEEeCCccC
Confidence 999999999999999965
No 13
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.8e-25 Score=164.00 Aligned_cols=105 Identities=23% Similarity=0.468 Sum_probs=97.1
Q ss_pred CCCCCCceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCccccc
Q 031290 47 SPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFV 126 (162)
Q Consensus 47 ~~~~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L 126 (162)
..++.+..|++||.|+++|++++++++ +...|||.|+..||+|++|.|.+.+++...|++++.+|++|+||++++..+
T Consensus 22 ~~~~~k~~ltLTp~Av~~ik~ll~~~~--e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~l 99 (134)
T KOG1120|consen 22 KLAPRKAALTLTPSAVNHIKQLLSDKP--EDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTL 99 (134)
T ss_pred cccccccccccCHHHHHHHHHHHHhCC--cCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeee
Confidence 334567899999999999999999764 578999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeecCCcceEEEecCccceeE
Q 031290 127 KGATVDYVEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 127 ~G~tIDy~e~~~g~gF~i~np~~~~~~ 153 (162)
-|+++||+++.++++|+|.|||...-|
T Consensus 100 iGteMDyvddkL~Sefvf~npna~gtc 126 (134)
T KOG1120|consen 100 IGTEMDYVDDKLSSEFVFSNPNAKGTC 126 (134)
T ss_pred ccceehhhhhhhcCceEeeCCCccccc
Confidence 999999999999999999999977544
No 14
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.85 E-value=1.2e-20 Score=138.10 Aligned_cols=97 Identities=34% Similarity=0.504 Sum_probs=87.8
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCC--------CC-CcEEEEEecCCC-CCCcEEEEECCeEEEEcCCc
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGG--------CS-GFQYAFDLDYKI-NPDDRIFEKDGVKLVVDNIS 122 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gG--------Cs-G~~Y~l~l~~~~-~~dD~v~e~~Gi~v~VD~~s 122 (162)
|.|+||++|+++|++++..++. . |||+++.+| |+ |++|.|.+++++ +++|.+++.+|++|+||+.+
T Consensus 1 M~I~iT~~A~~~l~~~~~~~~~---~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~ 76 (112)
T PF01521_consen 1 MKITITDAAAERLKQLLKEDPK---K-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYS 76 (112)
T ss_dssp -EEEE-HHHHHHHHHHHHCTTE---S-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGG
T ss_pred CEEEECHHHHHHHHHHHhcCCC---E-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccH
Confidence 7899999999999999998741 2 999999999 99 999999999877 89999999999999999999
Q ss_pred cccc-CCcEEEeeecCCcceEEEecCccceeE
Q 031290 123 YDFV-KGATVDYVEELIRSAFVVRHFLLLSVF 153 (162)
Q Consensus 123 ~~~L-~G~tIDy~e~~~g~gF~i~np~~~~~~ 153 (162)
.+|| +|++|||+++..+.+|++.||+...=|
T Consensus 77 ~~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~ 108 (112)
T PF01521_consen 77 LWYLDEGLTIDYVEDLGGFGFKSDNPNLDSNC 108 (112)
T ss_dssp HHHH-TTEEEEEEEETTEEEEEEETTTEEEEE
T ss_pred hhhhhCCCEEEEEEccCccEEEECCCCcCcee
Confidence 9999 999999999999999999999876544
No 15
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=9.3e-16 Score=108.65 Aligned_cols=88 Identities=25% Similarity=0.333 Sum_probs=73.8
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCC----CcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCC
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCS----GFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG 128 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCs----G~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G 128 (162)
|.|+||+.|.+|+++.+..++ +..||++|+.|||+ ||+.++..+. |++--..-+.+|++|+|..+++||+++
T Consensus 1 Mni~vtd~A~~wfk~E~~l~~---g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d 76 (95)
T COG4841 1 MNIEVTDQALKWFKEELDLEE---GNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDD 76 (95)
T ss_pred CceEEcHHHHHHHHHhcCCCC---CCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcC
Confidence 789999999999999998763 67899999999998 6666665442 455445567899999999999999999
Q ss_pred --cEEEeeecCCcceEEE
Q 031290 129 --ATVDYVEELIRSAFVV 144 (162)
Q Consensus 129 --~tIDy~e~~~g~gF~i 144 (162)
++|||.++.....|..
T Consensus 77 ~d~~v~y~~~~Dei~fs~ 94 (95)
T COG4841 77 HDLKVDYSPDTDEISFSY 94 (95)
T ss_pred CcEEEeccCCCCcceeec
Confidence 9999999988887764
No 16
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=3.4e-08 Score=72.04 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=68.1
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCC-cEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCC-cE
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSG-FQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG-AT 130 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG-~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G-~t 130 (162)
|.||+|++|+++|+.....+.. ....+|...++.||.| --+.++++.+....|..++.++.+++|-.-..-|+++ ++
T Consensus 1 M~Itftd~a~~~l~~a~d~nl~-~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mt 79 (114)
T COG4918 1 MKITFTDKAADKLKAAGDVNLV-FDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMT 79 (114)
T ss_pred CeEEecHHHHHHHHHhhccCcC-ccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceee
Confidence 7899999999999988776542 2356676666677754 2355666666677888999999999999988888886 89
Q ss_pred EEeeecCCcceEEEe
Q 031290 131 VDYVEELIRSAFVVR 145 (162)
Q Consensus 131 IDy~e~~~g~gF~i~ 145 (162)
|||.+.. ....++
T Consensus 80 idyN~~~--ktl~Lk 92 (114)
T COG4918 80 IDYNPSY--KTLELK 92 (114)
T ss_pred eecCCcc--ceEEEc
Confidence 9998764 344444
No 17
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.011 Score=43.19 Aligned_cols=94 Identities=21% Similarity=0.266 Sum_probs=65.2
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecC---CCCCCcEEE-EECCeEEEEcCCcccccCC
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG 128 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~G 128 (162)
..++.|++|+.-|.++..+.+ .+ ++-..|||+.-+--|-+.. -..++|+.. +.+|++|+|...++.+-+-
T Consensus 5 ~~V~aT~aAl~Li~~l~~~hg-----pv-mFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKH 78 (116)
T COG3564 5 ARVLATPAALDLIAELQAEHG-----PV-MFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKH 78 (116)
T ss_pred cceecCHHHHHHHHHHHHhcC-----CE-EEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhc
Confidence 468999999999999887664 23 4556778862232232221 123566554 6799999999999988886
Q ss_pred --cEEEeeecCCcceEEEecCccceeEEeE
Q 031290 129 --ATVDYVEELIRSAFVVRHFLLLSVFRFV 156 (162)
Q Consensus 129 --~tIDy~e~~~g~gF~i~np~~~~~~~~~ 156 (162)
..||-+.. -|..|.+.|... -||+
T Consensus 79 TqLIIDVVpG-RGGmFSLdng~E---~RFL 104 (116)
T COG3564 79 TQLIIDVVPG-RGGMFSLDNGRE---KRFL 104 (116)
T ss_pred cEEEEEEecC-CCceeEccCCcc---eeee
Confidence 58888764 578899997665 4555
No 18
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=96.01 E-value=0.04 Score=39.87 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=51.0
Q ss_pred EEEecCCCCCcEEEEEecC---CCCCCcEEE-EECCeEEEEcCCcccccCC--cEEEeeecCCcceEEEecCccceeEEe
Q 031290 82 LGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG--ATVDYVEELIRSAFVVRHFLLLSVFRF 155 (162)
Q Consensus 82 l~v~~gGCsG~~Y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~G--~tIDy~e~~~g~gF~i~np~~~~~~~~ 155 (162)
++-..|||..-+-=|-+.. ...+.|+.+ +.+|++|+|++....|.+. .+||-++ +.|.+|.+.+|... ||
T Consensus 14 mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSLE~~~G~---rF 89 (95)
T PF05610_consen 14 MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSLEAPEGK---RF 89 (95)
T ss_pred EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeeccCCCCc---EE
Confidence 3445778862233333332 234567654 6799999999999999998 5899876 56799999999874 66
Q ss_pred Ee
Q 031290 156 VI 157 (162)
Q Consensus 156 ~~ 157 (162)
+|
T Consensus 90 ~~ 91 (95)
T PF05610_consen 90 LT 91 (95)
T ss_pred EE
Confidence 55
No 19
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=45.75 E-value=60 Score=27.16 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcC
Q 031290 63 KRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120 (162)
Q Consensus 63 ~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~ 120 (162)
...+++++...-..-..-|+.+.-.||+- ...+.-| |.+.|.|+|.+|++=++..
T Consensus 59 NavkE~~~dK~y~~~kiYRf~I~C~~C~n-~i~~RTD--PkN~~YV~EsGg~R~i~pq 113 (272)
T COG5134 59 NAVKEEIGDKSYYTTKIYRFSIKCHLCSN-PIDVRTD--PKNTEYVVESGGRRKIEPQ 113 (272)
T ss_pred hHHHHHhcccccceeEEEEEEEEccCCCC-ceeeecC--CCCceEEEecCceeecCcc
Confidence 34556666543222346799999999976 4555544 6789999999999855443
No 20
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=44.22 E-value=67 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCC
Q 031290 61 FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYK 101 (162)
Q Consensus 61 Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~ 101 (162)
..++|+++|.+.= +...+++.=..|||++ .|.+.++.+
T Consensus 4 ~e~~l~~~L~~~l--~p~~v~V~D~SgGCG~-~F~v~IvS~ 41 (85)
T KOG3348|consen 4 TEERLEELLTEAL--EPEHVEVQDVSGGCGS-MFDVVIVSA 41 (85)
T ss_pred hHHHHHHHHHhhc--CceEEEEEEcCCCccc-eEEEEEEcc
Confidence 4677888887663 3346777666799965 788877654
No 21
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=41.63 E-value=22 Score=30.79 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=59.0
Q ss_pred ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCC-CCCCcEEEE-------ECCeEEEEcCCccc
Q 031290 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYK-INPDDRIFE-------KDGVKLVVDNISYD 124 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~-~~~dD~v~e-------~~Gi~v~VD~~s~~ 124 (162)
+.+-+.+.|-+...+....+.-++ --|-++--++ .|.=.+... .+.+-+++. .+|++++|..---+
T Consensus 54 qt~~lp~~~~e~~V~ec~~~~F~e-cDIvfsglda-----d~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpe 127 (361)
T KOG4777|consen 54 QTDLLPESAHEYTVEECTADSFNE-CDIVFSGLDA-----DIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPE 127 (361)
T ss_pred hcccccchhhhhhHhhcChhhccc-ccEEEecCCc-----hhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHH
Confidence 677888888888877776543212 1222221111 121112211 123334432 47999999999999
Q ss_pred ccCCcEEEeeecCCcceEEEecCcc
Q 031290 125 FVKGATVDYVEELIRSAFVVRHFLL 149 (162)
Q Consensus 125 ~L~G~tIDy~e~~~g~gF~i~np~~ 149 (162)
-|+|..+-..+..++.||.|.|+|-
T Consensus 128 hld~ik~~~~~~k~~~G~iI~nsNC 152 (361)
T KOG4777|consen 128 HLDGIKVGLDTGKMGKGAIIANSNC 152 (361)
T ss_pred HhhhheeccccCCCCCceEEecCCC
Confidence 9999999999999999999999984
No 22
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=38.22 E-value=41 Score=23.94 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHHHHHhccCCCCCceEEEEEecCCCCCc
Q 031290 61 FIKRMKELQASETSDNKAMLRLGVETGGCSGF 92 (162)
Q Consensus 61 Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~ 92 (162)
-.+.|++.++++ +|++.+...||.||
T Consensus 19 V~~al~~ei~~~------gl~v~v~~tGC~G~ 44 (92)
T cd03063 19 VAEAIEAEAAAR------GLAATIVRNGSRGM 44 (92)
T ss_pred HHHHHHHHHHHc------CCeEEEEEecCcee
Confidence 344555555544 24888899999987
No 23
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=33.59 E-value=62 Score=22.45 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=26.2
Q ss_pred ceeeeCHHHHHHHHHHHhccCC-CCCceEEEEEecCCCC
Q 031290 53 DSIHMTDNFIKRMKELQASETS-DNKAMLRLGVETGGCS 90 (162)
Q Consensus 53 ~~ItIT~~Aa~~lk~ll~~~~~-~~~~~LRl~v~~gGCs 90 (162)
..|++|+...++|++.+..... ....+.++..+..||.
T Consensus 3 ~vlkl~~~~i~~l~~~y~~~~~~~~~p~~~f~aK~~~~t 41 (81)
T PF11858_consen 3 IVLKLTSEQIEKLKKYYKPYLTSSKPPYAVFQAKYNGVT 41 (81)
T ss_dssp EEEE--HHHHHHHHHHSTT-B-SS--TTEEEEEEETTEE
T ss_pred EEEECCHHHHHHHHHHHHHhcccCCCCCEEEEEeCCCeE
Confidence 3689999999999999854321 2346899999999995
No 24
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.48 E-value=19 Score=26.82 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=11.0
Q ss_pred CCcccccCCcEEEeeecCC
Q 031290 120 NISYDFVKGATVDYVEELI 138 (162)
Q Consensus 120 ~~s~~~L~G~tIDy~e~~~ 138 (162)
|..+..|+|-||||-+...
T Consensus 46 P~e~~qldGyTvDy~~~~~ 64 (117)
T cd01234 46 PTEFIQLDGYTVDYMPESD 64 (117)
T ss_pred chhheeecceEEeccCCCC
Confidence 3445556667777765443
No 25
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=23.21 E-value=2e+02 Score=23.40 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEEEecCC-CCCcEEEEEecCC
Q 031290 59 DNFIKRMKELQASETSDNKAMLRLGVETGG-CSGFQYAFDLDYK 101 (162)
Q Consensus 59 ~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gG-CsG~~Y~l~l~~~ 101 (162)
.++.++++++|...+ .|+.+-++.+... -+|+.|-|.|+++
T Consensus 15 ~e~~~~~k~~L~~a~--~GW~~~yyp~~~~~~GGy~f~~kF~~~ 56 (235)
T PF14135_consen 15 NEALAEYKKILTSAP--NGWKLEYYPKTDQSYGGYTFLMKFDDD 56 (235)
T ss_pred HHHHHHHHHHHhcCC--CceEEEEECCCCccCCcEEEEEEECCC
Confidence 567777888886664 4677777776532 3589999999764
No 26
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=20.07 E-value=97 Score=21.46 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=17.6
Q ss_pred CcEEEEEecCCCCCCcEEEEECCeEEEEcCC
Q 031290 91 GFQYAFDLDYKINPDDRIFEKDGVKLVVDNI 121 (162)
Q Consensus 91 G~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~ 121 (162)
|+.|.+....-+..-|+++..-.+-||||-.
T Consensus 35 G~RyR~~~~~lpG~PDiv~~~~k~aIFVdGC 65 (75)
T PF03852_consen 35 GLRYRLNRKDLPGKPDIVFPKYKIAIFVDGC 65 (75)
T ss_dssp T--EEES-TTSTT--SEEEGGGTEEEEEE-T
T ss_pred CCEEEEccCcCCCCCCEEECCCCEEEEEecc
Confidence 4555555544455678888888888888753
Done!