BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031291
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1ZXH4|EMC6_DICDI ER membrane protein complex subunit 6 OS=Dictyostelium discoideum
GN=emc6 PE=3 SV=1
Length = 123
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 58/97 (59%)
Query: 66 FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFS 125
+ E +Q N K + + + +SI+GG IAG++GF+G+ GF+FYF I K +
Sbjct: 27 YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKN 86
Query: 126 VHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
+H YF + I D GLM ++LFWTF Y+I+HI+
Sbjct: 87 LHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNIIHIY 123
>sp|Q3ZCG8|EMC6_BOVIN ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3
SV=1
Length = 110
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 58/92 (63%)
Query: 71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
++ N V+ Y RT +S + G AGILG TGL GF+FY L + S+ L+ KA+ + YF
Sbjct: 19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78
Query: 131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
S + G +GGL ++VLFWTF Y +VH++
Sbjct: 79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110
>sp|Q9CQW0|EMC6_MOUSE ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=2
SV=1
Length = 110
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
++ N V+ Y RT +S + G AGILG TGL GF+FY L + S+ L+ KA + YF
Sbjct: 19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78
Query: 131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
S + G +GGL ++VLFWTF Y +VH++
Sbjct: 79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110
>sp|Q9BV81|EMC6_HUMAN ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1
SV=1
Length = 110
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 71 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130
++ N V+ Y RT +S + G AGILG TGL GF+FY L + S+ L+ KA + YF
Sbjct: 19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78
Query: 131 DSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
S + G +GGL ++VLFWTF Y +VH++
Sbjct: 79 KSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110
>sp|Q6P0F0|EMC6_DANRE ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=2
SV=1
Length = 110
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 50 SVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL 109
SVA K+ Q + +++ N V+ Y RT +S + G AGILG TGL GFVFYFL
Sbjct: 3 SVAAKREGP-----QFISEVSVRGNGAVLDYCRTSVSALSGATAGILGLTGLYGFVFYFL 57
Query: 110 IMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
+ S+ L+ KA + F S + G +GGL ++VLFWTF Y +VH++
Sbjct: 58 ASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLFTYVLFWTFLYGMVHVY 110
>sp|Q6GLC5|EMC6_XENTR ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6
PE=3 SV=1
Length = 110
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%)
Query: 64 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 123
Q + ++ N V+ Y RT +S + G AGILG T L GF+FYFL + S+ L+ K+
Sbjct: 12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSG 71
Query: 124 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
+ YF S + G +GGL ++VLFWTF Y +VH++
Sbjct: 72 RKWNKYFKSRKPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110
>sp|Q68EU8|EMC6_XENLA ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6
PE=3 SV=1
Length = 110
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%)
Query: 64 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 123
Q + ++ N V+ Y RT +S + G AGILG T L GF+FYFL + S+ L+ K+
Sbjct: 12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSG 71
Query: 124 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
+ YF S + G +GGL ++VLFWTF Y +VH++
Sbjct: 72 RKWNKYFKSRKPLFTGGLVGGLFTYVLFWTFLYGMVHVY 110
>sp|O59764|YJMB_SCHPO ER membrane protein complex subunit 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1020.11c PE=3 SV=2
Length = 108
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 69 ENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA-KAKFSVH 127
EN+ N +V+ + R S G AGILG T G Y L S L A K + ++
Sbjct: 13 ENVAYNEQVVSFVRNLTSSFFGCAAGILGLTSYEGLALYVLGYFFVSFLLFALKMRGNLT 72
Query: 128 SYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162
Y+ + + L G S+VL WT Y +V+++
Sbjct: 73 KYYQPGYKFWIAKILDGAPSYVLTWTLFYSLVYVY 107
>sp|Q12431|EMC6_YEAST ER membrane protein complex subunit 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC6 PE=1 SV=1
Length = 108
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 64 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL------IMAITSVC 117
QI N+ N K + + + +++ G++AG L + GF+++ + ++ I +C
Sbjct: 10 QINATANVVDNKKRLLFVQDSSALVLGLVAGFLQIESVHGFIWFLILYNLINVIYIVWIC 69
Query: 118 LMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIV 159
+ KF Y + I + F + FV+ WTF Y ++
Sbjct: 70 QLQPGKF----YQSPLHDIFFESFFREITGFVMAWTFGYALI 107
>sp|Q9CQT9|CT024_MOUSE Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1
Length = 129
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 75 MKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMA-ITSVCLMAKAKFSVHSYFDSW 133
+ VIY+ R ++++ GVI G+L G +G + LI A + + + Y +W
Sbjct: 42 LDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTW 101
Query: 134 NRILLDGFLGGLMSFVLFWTFAYDIVH 160
+ +GF+ F++ W Y +H
Sbjct: 102 E-LTKEGFMTSFALFMVIWIIFYTAIH 127
>sp|A8FKW6|SYP_CAMJ8 Proline--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:6 (strain 81116 / NCTC 11828) GN=proS PE=3 SV=1
Length = 568
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 107
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 302 SDDLQEIKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 348
>sp|A1VYQ2|SYP_CAMJJ Proline--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 107
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEIKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 349
>sp|Q9BUV8|CT024_HUMAN Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=2
SV=1
Length = 137
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 69 ENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMA 112
E+ + VIY+ R ++++ GVI G+L G +G + LI A
Sbjct: 36 EDKDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINA 79
>sp|Q5HVM3|SYP_CAMJR Proline--tRNA ligase OS=Campylobacter jejuni (strain RM1221)
GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 107
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEVKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 349
>sp|Q9PHX1|SYP_CAMJE Proline--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 107
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEVKAQNTCSALELVDASEEELKK-AGLVAGFIGFVGLKDIDFY 349
>sp|A7H4J9|SYP_CAMJD Proline--tRNA ligase OS=Campylobacter jejuni subsp. doylei (strain
ATCC BAA-1458 / RM4099 / 269.97) GN=proS PE=3 SV=1
Length = 569
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFY 107
S+DLQ A+N S ++++ S L G++AG +GF GL FY
Sbjct: 303 SDDLQEVKAQNACSALELVDASEEELEK-AGLVAGFIGFVGLKDIDFY 349
>sp|P26326|VSI1_TRYBB Variant surface glycoprotein ILTAT 1.21 OS=Trypanosoma brucei
brucei PE=2 SV=1
Length = 471
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 1 MSTNQRR-----LNKNTTNNKNKDSSLINSQQQSVESNSCSPISWVEDMAT----HSDSV 51
+TN+RR N+ T+NN D + E N C P E AT +
Sbjct: 386 QATNRRRHGADDTNQCTSNNATADECPETRCEYDSEKNECRPKKGTETTATGPGERTTPA 445
Query: 52 AGKKSNDVSNDLQI 65
GK +N VS+ L I
Sbjct: 446 DGKANNTVSDSLLI 459
>sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.04c PE=3 SV=1
Length = 542
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 30 VESNSCSPISWVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIG 89
V + S ++WV AG S D S + A ++ +++K I ++ I
Sbjct: 135 VPARSMPVVAWVVGWLNLLGQAAGVSSTDWSCAQLLLAAVSISTDLKYIPTNQH----IV 190
Query: 90 GVIAGILGFTGLMGFV--------------FYFLIMAITSVCLMAK-AKFSVHSY 129
GV+A ++ F GL+ + F+ +++ + +CL+AK KF+ Y
Sbjct: 191 GVMAAVIVFHGLVNSLSTRWLDRITRFYATFHLIVLVVCMICLLAKCPKFNTGKY 245
>sp|Q6GIK4|CLFA_STAAR Clumping factor A OS=Staphylococcus aureus (strain MRSA252) GN=clfA
PE=3 SV=1
Length = 1029
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 2 STNQRRLNKNTTNNKNKDSSLINSQQQSVESNSCSPISWVEDMATHSDSVAGKKSNDVSN 61
S NQ N+ T+N+ N SS +NS Q S + + S + AT S++ + +S D SN
Sbjct: 141 SVNQTS-NETTSNDTNTVSS-VNSPQNSTNAENVSTTQDISTEATPSNNESAPQSTDASN 198
Query: 62 DLQIFNAEN 70
+ A N
Sbjct: 199 KDVVNQAVN 207
>sp|Q8L709|CHX28_ARATH Cation/H(+) antiporter 28 OS=Arabidopsis thaliana GN=CHX28 PE=2
SV=2
Length = 801
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 84 FLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSW----NRILLD 139
F S++G VIAG + T L G + + + S+ L+ K H Y + NR+
Sbjct: 340 FFSLLGTVIAGKVTGTVLCGLLLGYHVPETASLGLLLTTKGHFHVYLAALAIRTNRV--K 397
Query: 140 GFLGGLMSFVLFWTFAY 156
G L+ F++ +T Y
Sbjct: 398 STTGALIIFIIVFTVVY 414
>sp|C7GPP6|AIM14_YEAS2 Probable metalloreductase AIM14 OS=Saccharomyces cerevisiae (strain
JAY291) GN=AIM14 PE=3 SV=1
Length = 570
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 14 NNKNKDSSLINSQQQSVESNSCSPISWVEDMATHSDS--------VAGKKSNDVSNDLQI 65
NN+++D S+ N ++ +SN +P + +HS + V K S +SN+L+
Sbjct: 472 NNEDEDLSISNFNSENADSNDKTPET------SHSPTKENGSLIEVKSKHSFTLSNELKS 525
Query: 66 FNAENLQSN 74
FN E+ Q N
Sbjct: 526 FNNESAQVN 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,991,941
Number of Sequences: 539616
Number of extensions: 1975242
Number of successful extensions: 22334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 19393
Number of HSP's gapped (non-prelim): 2935
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)