Query 031291
Match_columns 162
No_of_seqs 112 out of 253
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4455 Uncharacterized conser 100.0 1.5E-34 3.2E-39 217.2 9.6 110 53-162 1-110 (110)
2 PF07019 Rab5ip: Rab5-interact 99.9 9.8E-28 2.1E-32 170.6 8.0 81 76-156 1-81 (81)
3 KOG3415 Putative Rab5-interact 99.8 2.8E-21 6.1E-26 147.7 8.2 88 74-161 41-128 (129)
4 PF01102 Glycophorin_A: Glycop 84.5 0.9 1.9E-05 35.2 2.6 14 84-97 66-79 (122)
5 COG5487 Small integral membran 84.4 2.8 6.1E-05 28.3 4.6 33 86-118 8-47 (54)
6 PRK13682 hypothetical protein; 81.1 4.4 9.5E-05 27.2 4.6 21 84-104 6-26 (51)
7 PF07043 DUF1328: Protein of u 74.0 9.9 0.00022 24.1 4.5 22 86-107 3-24 (39)
8 TIGR03546 conserved hypothetic 61.0 18 0.00039 28.9 4.7 26 135-160 108-133 (154)
9 PF02439 Adeno_E3_CR2: Adenovi 60.7 12 0.00027 23.6 2.9 14 83-96 4-17 (38)
10 PF10112 Halogen_Hydrol: 5-bro 52.7 33 0.00071 27.6 5.0 20 82-101 10-29 (199)
11 PF01034 Syndecan: Syndecan do 45.6 6.9 0.00015 27.4 -0.0 12 85-96 12-23 (64)
12 PF03419 Peptidase_U4: Sporula 44.8 81 0.0017 26.9 6.4 42 78-119 31-72 (293)
13 PRK12872 ubiA prenyltransferas 39.9 2.2E+02 0.0048 23.7 9.2 91 60-154 194-284 (285)
14 PLN03211 ABC transporter G-25; 38.5 1.7E+02 0.0037 28.2 8.1 35 77-111 407-448 (659)
15 PF05620 DUF788: Protein of un 37.3 2E+02 0.0043 22.8 7.2 25 69-93 8-32 (170)
16 cd08763 Cyt_b561_CYB561 Verteb 36.9 2.1E+02 0.0045 22.5 8.1 78 72-154 37-131 (143)
17 COG3162 Predicted membrane pro 36.0 83 0.0018 23.9 4.5 21 136-156 59-79 (102)
18 PF12650 DUF3784: Domain of un 35.0 1.4E+02 0.003 21.2 5.5 30 62-91 33-62 (97)
19 PHA00024 IX minor coat protein 34.2 35 0.00075 21.0 1.8 18 142-159 6-23 (33)
20 PF11457 DUF3021: Protein of u 32.7 2.1E+02 0.0044 21.2 7.0 72 84-157 52-123 (136)
21 COG3247 HdeD Uncharacterized c 32.6 2.1E+02 0.0045 23.7 6.7 68 83-151 82-149 (185)
22 PRK09487 sdhC succinate dehydr 32.3 1E+02 0.0022 23.7 4.7 21 137-157 64-84 (129)
23 TIGR02854 spore_II_GA sigma-E 32.0 2.1E+02 0.0046 24.6 7.0 54 78-131 31-86 (288)
24 COG4920 Predicted membrane pro 31.4 1.3E+02 0.0028 26.0 5.4 37 82-118 13-49 (249)
25 PF09835 DUF2062: Uncharacteri 30.7 83 0.0018 24.1 3.9 25 83-107 22-46 (154)
26 PF10112 Halogen_Hydrol: 5-bro 30.5 98 0.0021 24.8 4.5 37 81-117 5-42 (199)
27 PRK10697 DNA-binding transcrip 29.0 50 0.0011 25.4 2.4 10 87-96 17-26 (118)
28 PF12725 DUF3810: Protein of u 28.9 1.7E+02 0.0037 25.7 6.0 70 84-157 9-80 (318)
29 COG2177 FtsX Cell division pro 28.7 2.3E+02 0.0049 24.9 6.7 76 78-154 153-235 (297)
30 PF06570 DUF1129: Protein of u 27.7 3.3E+02 0.0071 22.0 9.1 16 103-118 112-127 (206)
31 TIGR02978 phageshock_pspC phag 27.6 91 0.002 24.0 3.6 15 87-101 12-26 (121)
32 PF04070 DUF378: Domain of unk 27.2 49 0.0011 22.9 1.8 27 75-101 1-27 (62)
33 PRK09400 secE preprotein trans 26.3 1.1E+02 0.0024 20.9 3.4 15 98-112 45-59 (61)
34 cd08764 Cyt_b561_CG1275_like N 26.2 4E+02 0.0086 22.4 8.3 76 74-153 56-149 (214)
35 PF10960 DUF2762: Protein of u 25.7 58 0.0013 22.9 2.1 19 136-154 9-27 (71)
36 PF06916 DUF1279: Protein of u 24.8 1.4E+02 0.0031 21.3 4.0 55 100-154 11-73 (91)
37 PF07344 Amastin: Amastin surf 24.2 2E+02 0.0042 22.4 5.0 15 141-155 134-148 (155)
38 PRK10712 PTS system fructose-s 23.9 1.3E+02 0.0028 28.8 4.6 33 87-119 299-331 (563)
39 cd08766 Cyt_b561_ACYB-1_like P 23.7 3.6E+02 0.0078 21.1 8.3 75 75-153 40-130 (144)
40 KOG3195 Uncharacterized membra 23.6 1.7E+02 0.0036 24.9 4.7 59 70-131 116-181 (213)
41 PLN02953 phosphatidate cytidyl 23.6 2.1E+02 0.0046 26.6 5.7 37 79-115 98-134 (403)
42 PF12666 PrgI: PrgI family pro 23.5 1.8E+02 0.0039 20.3 4.3 20 80-99 18-37 (93)
43 PRK13823 conjugal transfer pro 22.9 1.5E+02 0.0033 21.9 3.9 19 85-103 25-43 (94)
44 PF03613 EIID-AGA: PTS system 22.5 1.9E+02 0.0041 25.0 5.0 40 76-116 108-147 (264)
45 COG2155 Uncharacterized conser 22.5 1.8E+02 0.0039 21.2 4.1 26 76-101 4-29 (79)
46 PRK06231 F0F1 ATP synthase sub 22.2 76 0.0016 26.1 2.4 6 145-150 55-60 (205)
47 PF08510 PIG-P: PIG-P; InterP 22.1 1.9E+02 0.0042 21.8 4.5 59 100-158 4-69 (126)
48 PRK11677 hypothetical protein; 22.0 71 0.0015 25.1 2.1 17 80-96 3-19 (134)
49 PF11127 DUF2892: Protein of u 21.6 1.9E+02 0.0041 19.0 3.9 27 72-99 2-29 (66)
50 TIGR02840 spore_YtaF putative 21.5 2E+02 0.0043 23.6 4.8 37 79-115 135-171 (206)
51 PF12483 GIDE: E3 Ubiquitin li 21.4 97 0.0021 23.9 2.8 37 60-97 124-160 (160)
52 COG3619 Predicted membrane pro 21.1 2.8E+02 0.0062 23.5 5.7 44 72-116 166-209 (226)
53 PF10779 XhlA: Haemolysin XhlA 21.1 1.7E+02 0.0037 19.9 3.7 26 71-96 36-61 (71)
54 COG0591 PutP Na+/proline sympo 20.9 1.5E+02 0.0034 27.2 4.4 34 99-133 4-37 (493)
55 PRK09546 zntB zinc transporter 20.9 4.5E+02 0.0097 22.5 7.0 33 85-117 273-313 (324)
56 PF13997 YqjK: YqjK-like prote 20.4 1.4E+02 0.0031 20.8 3.2 25 70-94 25-49 (73)
57 TIGR00383 corA magnesium Mg(2+ 20.4 4.5E+02 0.0098 22.1 6.9 30 88-117 270-307 (318)
No 1
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=217.21 Aligned_cols=110 Identities=42% Similarity=0.718 Sum_probs=104.8
Q ss_pred cccCCCCCccccccChHHHHhhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 031291 53 GKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDS 132 (162)
Q Consensus 53 ~~~~~~~~~~~~~~~~env~~N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~ 132 (162)
+|.+.+++..++.|+.++++.|.++++++|+.+|+++||+||||||||+.||+||++++++.+.++..|++++|.+||++
T Consensus 1 ~k~s~~~~~~~~~~s~aav~nN~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s 80 (110)
T KOG4455|consen 1 EKMSKAEEVFIPIYSTAAVRNNKKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQS 80 (110)
T ss_pred CccchhhhcCCcchhHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCc
Confidence 35566778899999999999999999999999999999999999999999999999998888888888999999999999
Q ss_pred hhhHhhhhhhhhHHHHHHHHHhhccceeeC
Q 031291 133 WNRILLDGFLGGLMSFVLFWTFAYDIVHIF 162 (162)
Q Consensus 133 ~~~l~~eG~~~gl~tFVL~WTL~Y~lVHIy 162 (162)
+.++|++++++++++|||+||++|++||+|
T Consensus 81 ~~~~f~~~f~~Gl~tyVl~Wtf~Y~lv~~~ 110 (110)
T KOG4455|consen 81 RRNLFTESFLGGLTTYVLAWTFFYGLVHVY 110 (110)
T ss_pred hhHHHHHHHhchHHHHHHHHHHHhhhhccC
Confidence 999999999999999999999999999997
No 2
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=99.95 E-value=9.8e-28 Score=170.65 Aligned_cols=81 Identities=46% Similarity=0.911 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhhhhhhhHHHHHHHHHhh
Q 031291 76 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFA 155 (162)
Q Consensus 76 ~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~eG~~~gl~tFVL~WTL~ 155 (162)
|+++|+||++|+++|++||||||||+.||++|+++++++++++++|.++++++||++++|+++||+++++++|||+||++
T Consensus 1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~ 80 (81)
T PF07019_consen 1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 031291 156 Y 156 (162)
Q Consensus 156 Y 156 (162)
|
T Consensus 81 Y 81 (81)
T PF07019_consen 81 Y 81 (81)
T ss_pred C
Confidence 8
No 3
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.8e-21 Score=147.70 Aligned_cols=88 Identities=25% Similarity=0.478 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhhhhhhhHHHHHHHHH
Q 031291 74 NMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWT 153 (162)
Q Consensus 74 N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~eG~~~gl~tFVL~WT 153 (162)
=+|+++|+||+++++.|+++||+||+|+.|++.|+..+..+.++|+++..+.+++.|++.+++..|||+.+|++|++.|+
T Consensus 41 llDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kEGf~asfa~FlvtWI 120 (129)
T KOG3415|consen 41 LLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKEGFMASFALFLVTWI 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred hhccceee
Q 031291 154 FAYDIVHI 161 (162)
Q Consensus 154 L~Y~lVHI 161 (162)
++|+++|.
T Consensus 121 i~Yt~~hy 128 (129)
T KOG3415|consen 121 IFYTLAHY 128 (129)
T ss_pred HHHhhhcc
Confidence 99999994
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.49 E-value=0.9 Score=35.24 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhcc
Q 031291 84 FLSIIGGVIAGILG 97 (162)
Q Consensus 84 ~~sll~Gi~AGILG 97 (162)
++.+++|++|||+|
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 48899999999986
No 5
>COG5487 Small integral membrane protein [Function unknown]
Probab=84.43 E-value=2.8 Score=28.30 Aligned_cols=33 Identities=27% Similarity=0.649 Sum_probs=22.0
Q ss_pred HHHHHHhhhhccccchhH-------HHHHHHHHHHHHHHH
Q 031291 86 SIIGGVIAGILGFTGLMG-------FVFYFLIMAITSVCL 118 (162)
Q Consensus 86 sll~Gi~AGILGLtGl~G-------Fify~l~~~lis~l~ 118 (162)
=++.-++||.||+.|+.| ++||+.+.+++..++
T Consensus 8 FlvialIa~~lGFgGiagaaAgiAkIlF~i~~vlf~vsL~ 47 (54)
T COG5487 8 FLVIALIAGALGFGGIAGAAAGIAKILFFIFLVLFLVSLF 47 (54)
T ss_pred HHHHHHHHHHhCcccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 356678899999999988 455555444444333
No 6
>PRK13682 hypothetical protein; Provisional
Probab=81.15 E-value=4.4 Score=27.18 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhhccccchhHH
Q 031291 84 FLSIIGGVIAGILGFTGLMGF 104 (162)
Q Consensus 84 ~~sll~Gi~AGILGLtGl~GF 104 (162)
++-++..++||++|++|+.|-
T Consensus 6 liFliiA~iA~~lGF~GiAg~ 26 (51)
T PRK13682 6 IIFLVIALIAAVLGFGGIAGA 26 (51)
T ss_pred HHHHHHHHHHHHhccchHHHH
Confidence 345678899999999999983
No 7
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=73.96 E-value=9.9 Score=24.12 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=17.5
Q ss_pred HHHHHHhhhhccccchhHHHHH
Q 031291 86 SIIGGVIAGILGFTGLMGFVFY 107 (162)
Q Consensus 86 sll~Gi~AGILGLtGl~GFify 107 (162)
-++..++||++|++|..|-..-
T Consensus 3 FliiAliAg~lGF~Giag~a~~ 24 (39)
T PF07043_consen 3 FLIIALIAGVLGFGGIAGTAAG 24 (39)
T ss_pred hHHHHHHHHHcCcccHHHHHHH
Confidence 3577899999999999985433
No 8
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=60.95 E-value=18 Score=28.94 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=20.1
Q ss_pred hHhhhhhhhhHHHHHHHHHhhcccee
Q 031291 135 RILLDGFLGGLMSFVLFWTFAYDIVH 160 (162)
Q Consensus 135 ~l~~eG~~~gl~tFVL~WTL~Y~lVH 160 (162)
+++.+|+..|+...+.++.++|-+|.
T Consensus 108 tl~~Gg~l~Gli~~~~~Y~ls~~lI~ 133 (154)
T TIGR03546 108 TIVMGSFVVGLILLPPAFAISKVIIA 133 (154)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888776653
No 9
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=60.67 E-value=12 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhc
Q 031291 83 TFLSIIGGVIAGIL 96 (162)
Q Consensus 83 ~~~sll~Gi~AGIL 96 (162)
+..|+++|+++|+.
T Consensus 4 s~IaIIv~V~vg~~ 17 (38)
T PF02439_consen 4 STIAIIVAVVVGMA 17 (38)
T ss_pred chhhHHHHHHHHHH
Confidence 45677778777754
No 10
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=52.67 E-value=33 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhccccch
Q 031291 82 RTFLSIIGGVIAGILGFTGL 101 (162)
Q Consensus 82 R~~~sll~Gi~AGILGLtGl 101 (162)
|.+++++++++++++.+-++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSFFGF 29 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55666666666655554433
No 11
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=45.64 E-value=6.9 Score=27.39 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhc
Q 031291 85 LSIIGGVIAGIL 96 (162)
Q Consensus 85 ~sll~Gi~AGIL 96 (162)
.++++|+++|+|
T Consensus 12 aavIaG~Vvgll 23 (64)
T PF01034_consen 12 AAVIAGGVVGLL 23 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 556666666655
No 12
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=44.77 E-value=81 Score=26.92 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 031291 78 IYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLM 119 (162)
Q Consensus 78 l~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~ 119 (162)
..+.|-+++.++|.+...+-+....+++..++.-++++.+..
T Consensus 31 ~~~~Rll~~A~~Gal~~~~~~~p~~~~~~~~~~k~l~s~lmv 72 (293)
T PF03419_consen 31 ASRWRLLLGAAIGALYSLLIFFPPLSFLYSILFKLLISVLMV 72 (293)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 567888889888888887777777777776666666665544
No 13
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=39.89 E-value=2.2e+02 Score=23.69 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=40.1
Q ss_pred CccccccChHHHHhhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhh
Q 031291 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLD 139 (162)
Q Consensus 60 ~~~~~~~~~env~~N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~e 139 (162)
-+.++..-.+.-....-.+.++=....++.+...|.++ +...+..++......+........+.++++. ..-+-..
T Consensus 194 ~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 269 (285)
T PRK12872 194 LKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLP---LLLLVLLLLLAYVLYYIIKLFAADDKKDLLY-LSLLDKE 269 (285)
T ss_pred CcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhh---HHHHHHHHHHHHHHHHHHHHHhcccccchhH-HHHHhHH
Confidence 44455555555444444445555555555555555544 2222222111111111111111223333433 2233334
Q ss_pred hhhhhHHHHHHHHHh
Q 031291 140 GFLGGLMSFVLFWTF 154 (162)
Q Consensus 140 G~~~gl~tFVL~WTL 154 (162)
-++.++.+|++.|.+
T Consensus 270 ~~~~g~~~~~~~~~~ 284 (285)
T PRK12872 270 HMLLGLISMLLGLLV 284 (285)
T ss_pred HHHHHHHHHHHHHHh
Confidence 467888888888765
No 14
>PLN03211 ABC transporter G-25; Provisional
Probab=38.51 E-value=1.7e+02 Score=28.18 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcc-------ccchhHHHHHHHHH
Q 031291 77 VIYYSRTFLSIIGGVIAGILG-------FTGLMGFVFYFLIM 111 (162)
Q Consensus 77 vl~~iR~~~sll~Gi~AGILG-------LtGl~GFify~l~~ 111 (162)
.+.++|.+.+++.|++.|.+= +.+..|++||.+..
T Consensus 407 ~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~ 448 (659)
T PLN03211 407 SFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIF 448 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 355789999999999988763 33467888877544
No 15
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=37.34 E-value=2e+02 Score=22.84 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=19.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhh
Q 031291 69 ENLQSNMKVIYYSRTFLSIIGGVIA 93 (162)
Q Consensus 69 env~~N~~vl~~iR~~~sll~Gi~A 93 (162)
...+.|.+++...|.++.++.++..
T Consensus 8 k~a~~N~~~l~~l~~~~~~~~~l~~ 32 (170)
T PF05620_consen 8 KIAEENKATLKFLRLISLAVNILYL 32 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999988776666543
No 16
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.90 E-value=2.1e+02 Score=22.48 Aligned_cols=78 Identities=6% Similarity=-0.023 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhhc-----------ccc---chhHHHHHHHH--HHHHHHHHHHHhcCcccccccchhh
Q 031291 72 QSNMKVIYYSRTFLSIIGGVIAGIL-----------GFT---GLMGFVFYFLI--MAITSVCLMAKAKFSVHSYFDSWNR 135 (162)
Q Consensus 72 ~~N~~vl~~iR~~~sll~Gi~AGIL-----------GLt---Gl~GFify~l~--~~lis~l~~~k~~~~~~~YF~~~~~ 135 (162)
++..|.++|.-+.+++++|+++-.. -++ ||.|++.+++. +.+..+..+. .+.. .++...
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~-~P~~----~~~~r~ 111 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFL-FPGA----SFTLRS 111 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC----chHHHH
Confidence 3456789999999999988875433 333 44555554443 3333332222 1111 112222
Q ss_pred Hhh-hhhhhhHHHHHHHHHh
Q 031291 136 ILL-DGFLGGLMSFVLFWTF 154 (162)
Q Consensus 136 l~~-eG~~~gl~tFVL~WTL 154 (162)
.+. --.+.|+..|+|.+.-
T Consensus 112 ~~~p~H~~~G~~~f~la~~t 131 (143)
T cd08763 112 QYKPLHEFFGRALFLSSVGT 131 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 222 3567888899888763
No 17
>COG3162 Predicted membrane protein [Function unknown]
Probab=36.04 E-value=83 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.1
Q ss_pred HhhhhhhhhHHHHHHHHHhhc
Q 031291 136 ILLDGFLGGLMSFVLFWTFAY 156 (162)
Q Consensus 136 l~~eG~~~gl~tFVL~WTL~Y 156 (162)
..+-|+.-++.-|++.|++.+
T Consensus 59 ~Vt~Gip~gvg~fv~tfVlt~ 79 (102)
T COG3162 59 SVTRGIPFGVGVFVMTFVLTG 79 (102)
T ss_pred ceehhHhHHHHHHHHHHHHHH
Confidence 455677778888888888865
No 18
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=34.97 E-value=1.4e+02 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=17.7
Q ss_pred cccccChHHHHhhHHHHHHHHHHHHHHHHH
Q 031291 62 DLQIFNAENLQSNMKVIYYSRTFLSIIGGV 91 (162)
Q Consensus 62 ~~~~~~~env~~N~~vl~~iR~~~sll~Gi 91 (162)
|.+.||.+.+.+++.....+=.+..++.|+
T Consensus 33 Ek~~~D~~~l~r~~g~~~~~~~i~~li~~l 62 (97)
T PF12650_consen 33 EKEKYDKKKLCRFMGKFMLIIGIILLIGGL 62 (97)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777766665555555555444
No 19
>PHA00024 IX minor coat protein
Probab=34.21 E-value=35 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHhhccce
Q 031291 142 LGGLMSFVLFWTFAYDIV 159 (162)
Q Consensus 142 ~~gl~tFVL~WTL~Y~lV 159 (162)
.--+..|+|-|++.|++.
T Consensus 6 ~~ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 6 GYFFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345678999999998764
No 20
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=32.68 E-value=2.1e+02 Score=21.21 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhhhhhhhHHHHHHHHHhhcc
Q 031291 84 FLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYD 157 (162)
Q Consensus 84 ~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~eG~~~gl~tFVL~WTL~Y~ 157 (162)
.++.++|+.+=+.-.+.++= ..=.++++++.++.+.-.. ..-..|+....-+..-+..-...|++.|+..|-
T Consensus 52 ~ig~~~gl~s~if~~e~~s~-~~~~iiHf~~~~~~~~~~~-~~~gW~~~~~~~~~~~~~~fi~IYliIw~~~y~ 123 (136)
T PF11457_consen 52 LIGAVFGLASLIFEIERWSL-LKQTIIHFIITYAIFLILA-YLLGWFPLSVISLLIFILIFIIIYLIIWLIFYL 123 (136)
T ss_pred HHHHHHHHHHHHHcccchhH-HHHHHHHHHHHHHHHHHHH-HHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877763 3333444444443333110 000122211111122223344778888888773
No 21
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=32.61 E-value=2.1e+02 Score=23.69 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHhhhhhhhhHHHHHHH
Q 031291 83 TFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLF 151 (162)
Q Consensus 83 ~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~~~l~~eG~~~gl~tFVL~ 151 (162)
.++++++|+++|+-+..+-..+.+.++.-++.+-..-.-......+ .++++=....|+.+=+.++++.
T Consensus 82 Gil~i~~gil~~~~~~~~~~~l~~lia~~~i~~GI~ri~~~~~~~~-~~G~~w~ii~Gvl~ii~g~ill 149 (185)
T COG3247 82 GILSILLGILAGFNPGLGALVLTYLIAIWFIASGILRIVVAFRLRS-LPGWWWMIISGVLGIIAGLILL 149 (185)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cCCcHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887666666666666555554332211111111 1245544555555555555443
No 22
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=32.28 E-value=1e+02 Score=23.72 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=14.0
Q ss_pred hhhhhhhhHHHHHHHHHhhcc
Q 031291 137 LLDGFLGGLMSFVLFWTFAYD 157 (162)
Q Consensus 137 ~~eG~~~gl~tFVL~WTL~Y~ 157 (162)
+.+..+.-+..|.+.|.++|=
T Consensus 64 ~~~~~~~k~~~~~~~~al~yH 84 (129)
T PRK09487 64 IMDSFFVKFIMWGILTALAYH 84 (129)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 345556667777778877773
No 23
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=32.04 E-value=2.1e+02 Score=24.63 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--HhcCccccccc
Q 031291 78 IYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA--KAKFSVHSYFD 131 (162)
Q Consensus 78 l~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~--k~~~~~~~YF~ 131 (162)
..|.|-+++.++|.+.=++-+.....+++.+++-++++.+.+. ...+.+..++.
T Consensus 31 ~~~~Rll~ga~iGa~~~~~~~~p~~~~~~~~~~k~~~s~lmv~iafg~~~~~~f~k 86 (288)
T TIGR02854 31 VSQWRLLLAALIGSLYVLFMFTPKASFFTSPIAKLLYSFLIIFIAFGPKSLRFFLK 86 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 6788999999999888888888888888888888877766544 22333444444
No 24
>COG4920 Predicted membrane protein [Function unknown]
Probab=31.45 E-value=1.3e+02 Score=26.00 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 031291 82 RTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCL 118 (162)
Q Consensus 82 R~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~ 118 (162)
-|..-++.-+++-++|=+=..-.+.|+++.+.++...
T Consensus 13 sq~~iilfSlvlsffp~~f~tf~ilyilf~~glsiVm 49 (249)
T COG4920 13 SQLSIILFSLVLSFFPAEFFTFLILYILFFFGLSIVM 49 (249)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777888888665555666766666566544
No 25
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=30.73 E-value=83 Score=24.05 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhccccchhHHHHH
Q 031291 83 TFLSIIGGVIAGILGFTGLMGFVFY 107 (162)
Q Consensus 83 ~~~sll~Gi~AGILGLtGl~GFify 107 (162)
...++.+|+..|++|+-|+.-++..
T Consensus 22 iA~g~AiG~fig~~P~~g~~~~l~~ 46 (154)
T PF09835_consen 22 IALGFAIGVFIGFLPIFGLQTVLAI 46 (154)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4578899999999999877665443
No 26
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.46 E-value=98 Score=24.80 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=24.6
Q ss_pred HHHHHHHHHH-HhhhhccccchhHHHHHHHHHHHHHHH
Q 031291 81 SRTFLSIIGG-VIAGILGFTGLMGFVFYFLIMAITSVC 117 (162)
Q Consensus 81 iR~~~sll~G-i~AGILGLtGl~GFify~l~~~lis~l 117 (162)
.|.+.-.++| +++++.++..+.|+-.+++++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 42 (199)
T PF10112_consen 5 IRFIFRWILGVLIAAITFLVSFFGFDHSFLLSLLIGAV 42 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455544555 566667788888888887777766653
No 27
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=29.04 E-value=50 Score=25.44 Aligned_cols=10 Identities=50% Similarity=0.840 Sum_probs=5.3
Q ss_pred HHHHHhhhhc
Q 031291 87 IIGGVIAGIL 96 (162)
Q Consensus 87 ll~Gi~AGIL 96 (162)
.++|++|||-
T Consensus 17 ~i~GVCaGiA 26 (118)
T PRK10697 17 MVKGVCAGIA 26 (118)
T ss_pred EEeeeHHHHH
Confidence 3455555553
No 28
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.93 E-value=1.7e+02 Score=25.68 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-Hhc-CcccccccchhhHhhhhhhhhHHHHHHHHHhhcc
Q 031291 84 FLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA-KAK-FSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYD 157 (162)
Q Consensus 84 ~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~-k~~-~~~~~YF~~~~~l~~eG~~~gl~tFVL~WTL~Y~ 157 (162)
.++-+.+.+.|.+|+.= .-++.++++.+++..++.. +.. +.+... . ... ....+..-.+.|.+.|-+=|.
T Consensus 9 ~i~~~l~~~~g~~PFSv-gdi~~~~~il~ll~~~~~~~~~~~k~~~~~-~-l~~-~~~~~~~~y~~F~~~WGlNY~ 80 (318)
T PF12725_consen 9 VISKLLRRLFGWFPFSV-GDILYYLLILFLLYYLIRLIRKIFKKKKRF-K-LLN-ILFFLSVLYFLFYLLWGLNYY 80 (318)
T ss_pred HHHHHHHHhccCcChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-H-HHH-HHHHHHHHHHHHHHHhhhhcC
Confidence 44556666777777542 2333333333333333332 221 121111 0 011 122233455777888877663
No 29
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=28.74 E-value=2.3e+02 Score=24.89 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhc------C-cccccccchhhHhhhhhhhhHHHHHH
Q 031291 78 IYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK------F-SVHSYFDSWNRILLDGFLGGLMSFVL 150 (162)
Q Consensus 78 l~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~~~k~~------~-~~~~YF~~~~~l~~eG~~~gl~tFVL 150 (162)
-.|++.+.++.-++...-+++.-+..++..+++..-+=..++.+.. . -.++-|. ...++.+|..-|+.+.++
T Consensus 153 ~~wv~rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI-~~PFl~~g~~~gl~Ga~~ 231 (297)
T COG2177 153 REWVDRLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFI-RRPFLYEGMLIGLLGALI 231 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchHHH-HhHHHHHHHHHHHHHHHH
Confidence 5688888888887777777777777777776666665555555211 0 1112222 467888998889999988
Q ss_pred HHHh
Q 031291 151 FWTF 154 (162)
Q Consensus 151 ~WTL 154 (162)
.|.+
T Consensus 232 ~~~l 235 (297)
T COG2177 232 ALAL 235 (297)
T ss_pred HHHH
Confidence 8887
No 30
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.72 E-value=3.3e+02 Score=22.00 Aligned_cols=16 Identities=13% Similarity=0.430 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 031291 103 GFVFYFLIMAITSVCL 118 (162)
Q Consensus 103 GFify~l~~~lis~l~ 118 (162)
|++.-++.+++..+++
T Consensus 112 gi~tli~~~i~~G~~~ 127 (206)
T PF06570_consen 112 GIITLILVSIVGGLVF 127 (206)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 6766665555554443
No 31
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=27.57 E-value=91 Score=23.97 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=9.2
Q ss_pred HHHHHhhhhccccch
Q 031291 87 IIGGVIAGILGFTGL 101 (162)
Q Consensus 87 ll~Gi~AGILGLtGl 101 (162)
.++|++|||----|+
T Consensus 12 ~i~GVcaGlA~y~gi 26 (121)
T TIGR02978 12 KIAGVCAGLADYFGV 26 (121)
T ss_pred EehhHHHHHHHHHCc
Confidence 467788877544443
No 32
>PF04070 DUF378: Domain of unknown function (DUF378); InterPro: IPR007211 These are predicted membrane proteins of unknown function. The majority of the proteins have two predicted transmembrane regions.
Probab=27.16 E-value=49 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccch
Q 031291 75 MKVIYYSRTFLSIIGGVIAGILGFTGL 101 (162)
Q Consensus 75 ~~vl~~iR~~~sll~Gi~AGILGLtGl 101 (162)
+|.+.|+--++.++.|+=||++|+-++
T Consensus 1 Mk~ld~ialiLvIIGalNWGliGlf~~ 27 (62)
T PF04070_consen 1 MKILDKIALILVIIGALNWGLIGLFNF 27 (62)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467889999999999999999998543
No 33
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.26 E-value=1.1e+02 Score=20.88 Aligned_cols=15 Identities=33% Similarity=1.010 Sum_probs=9.9
Q ss_pred ccchhHHHHHHHHHH
Q 031291 98 FTGLMGFVFYFLIMA 112 (162)
Q Consensus 98 LtGl~GFify~l~~~ 112 (162)
+-|+.||+.+++.++
T Consensus 45 i~G~iGf~Ikli~~~ 59 (61)
T PRK09400 45 LIGLIGFIIYLIMTL 59 (61)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445677777777654
No 34
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.20 E-value=4e+02 Score=22.42 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHhh-------------hhcccc---chhHHHHHHHH--HHHHHHHHHHHhcCcccccccchhh
Q 031291 74 NMKVIYYSRTFLSIIGGVIA-------------GILGFT---GLMGFVFYFLI--MAITSVCLMAKAKFSVHSYFDSWNR 135 (162)
Q Consensus 74 N~~vl~~iR~~~sll~Gi~A-------------GILGLt---Gl~GFify~l~--~~lis~l~~~k~~~~~~~YF~~~~~ 135 (162)
..+.++|.-+.+|+++|+++ |+=-+. ||.|++.+++. +.+..+..+. .+.-.++ .+..
T Consensus 56 ~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl-~P~~~~~---~r~~ 131 (214)
T cd08764 56 RLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFL-FPGLPET---LRAA 131 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH-hcccchH---HHHH
Confidence 34779999999999998886 443443 45565555443 3333332221 1111110 1122
Q ss_pred HhhhhhhhhHHHHHHHHH
Q 031291 136 ILLDGFLGGLMSFVLFWT 153 (162)
Q Consensus 136 l~~eG~~~gl~tFVL~WT 153 (162)
+..-..+.|+.+|+|...
T Consensus 132 ~~p~H~~~Gl~~fvLaia 149 (214)
T cd08764 132 YLPLHVFFGLFIFVLAVA 149 (214)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 333345677777777664
No 35
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=25.72 E-value=58 Score=22.93 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=14.8
Q ss_pred HhhhhhhhhHHHHHHHHHh
Q 031291 136 ILLDGFLGGLMSFVLFWTF 154 (162)
Q Consensus 136 l~~eG~~~gl~tFVL~WTL 154 (162)
+...|+++-|+.++|+|++
T Consensus 9 ~~sQG~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 9 ALSQGIFAVLFVWLLFYVL 27 (71)
T ss_pred HHHcCcHHHHHHHHHHHHH
Confidence 4567888888888888875
No 36
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=24.82 E-value=1.4e+02 Score=21.27 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHH--HhcCcccccccc--h----hhHhhhhhhhhHHHHHHHHHh
Q 031291 100 GLMGFVFYFLIMAITSVCLMA--KAKFSVHSYFDS--W----NRILLDGFLGGLMSFVLFWTF 154 (162)
Q Consensus 100 Gl~GFify~l~~~lis~l~~~--k~~~~~~~YF~~--~----~~l~~eG~~~gl~tFVL~WTL 154 (162)
|+.|+++|+.++++.-.++|. ..+-+.....+. . .+......-+...+|+++|++
T Consensus 11 G~~~l~vy~~~s~~~~~~~y~~v~~GvDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lAy~~ 73 (91)
T PF06916_consen 11 GYVALGVYLGLSFISLGSCYLAVSSGVDVIALLESLGISVGWESKVEKKKNSSAGTFALAYAI 73 (91)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhhhhhhcccccHHHHHHHHHH
Confidence 566778887776665544433 333333322221 1 111222223567888888874
No 37
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=24.22 E-value=2e+02 Score=22.42 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHhh
Q 031291 141 FLGGLMSFVLFWTFA 155 (162)
Q Consensus 141 ~~~gl~tFVL~WTL~ 155 (162)
+..|+..++..|.+.
T Consensus 134 yg~GF~L~v~aw~l~ 148 (155)
T PF07344_consen 134 YGAGFALFVAAWCLD 148 (155)
T ss_pred cCccHHHHHHHHHHH
Confidence 456899999999864
No 38
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=23.89 E-value=1.3e+02 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 031291 87 IIGGVIAGILGFTGLMGFVFYFLIMAITSVCLM 119 (162)
Q Consensus 87 ll~Gi~AGILGLtGl~GFify~l~~~lis~l~~ 119 (162)
+.-|.+.|.+.-+.=.||+.=++.-++.+++..
T Consensus 299 lapg~i~g~~a~~~~~GFlG~Ilag~lagyv~~ 331 (563)
T PRK10712 299 LTPGLIGGMLAVSTGSGFIGGIIAGFLAGYVAK 331 (563)
T ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 455777888877777999999888888887654
No 39
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.70 E-value=3.6e+02 Score=21.11 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-----------cc---cchhHHHHHHHH--HHHHHHHHHHHhcCcccccccchhhHhh
Q 031291 75 MKVIYYSRTFLSIIGGVIAGIL-----------GF---TGLMGFVFYFLI--MAITSVCLMAKAKFSVHSYFDSWNRILL 138 (162)
Q Consensus 75 ~~vl~~iR~~~sll~Gi~AGIL-----------GL---tGl~GFify~l~--~~lis~l~~~k~~~~~~~YF~~~~~l~~ 138 (162)
.+.++|+-+.+|+++++++-+. -+ -||.|++.+.+. +.+..+..+. .+...++ .+..+..
T Consensus 40 ~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~-~P~~~~~---~r~~~~p 115 (144)
T cd08766 40 QKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFW-FPGASRN---TRAALLP 115 (144)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcHH---HHHHHHH
Confidence 4789999999999988875433 34 455666655553 3333332222 1111111 1345555
Q ss_pred hhhhhhHHHHHHHHH
Q 031291 139 DGFLGGLMSFVLFWT 153 (162)
Q Consensus 139 eG~~~gl~tFVL~WT 153 (162)
-..+.|..+|+|.+.
T Consensus 116 ~H~~~G~~~~~la~~ 130 (144)
T cd08766 116 WHVFLGLAIYYLAIA 130 (144)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556788999998875
No 40
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=23.64 E-value=1.7e+02 Score=24.90 Aligned_cols=59 Identities=20% Similarity=0.373 Sum_probs=35.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH-------HHHhcCccccccc
Q 031291 70 NLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCL-------MAKAKFSVHSYFD 131 (162)
Q Consensus 70 nv~~N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~l~-------~~k~~~~~~~YF~ 131 (162)
++..+-+.++|.--+ ++-+++||+++..+.+|=+.-++..++...+ |.||.+.+.+-+.
T Consensus 116 ~~n~~dsriFWlgL~---~~pv~W~if~v~al~~fk~~wL~lv~vg~~l~~aN~~Gy~rC~~~a~~~~~ 181 (213)
T KOG3195|consen 116 NVNAIDSRIFWLGLY---LCPVIWIIFAVFALFRFKFKWLILVVVGIALNSANLYGYSRCDKDAKKKFQ 181 (213)
T ss_pred cchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeeecCCccchhHH
Confidence 456666788886544 4456799999999988855544333333222 1256665554443
No 41
>PLN02953 phosphatidate cytidylyltransferase
Probab=23.57 E-value=2.1e+02 Score=26.56 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 031291 79 YYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITS 115 (162)
Q Consensus 79 ~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis 115 (162)
.+.|.+.+++.|.++..+=+.|=.-|...+.+...+.
T Consensus 98 l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg 134 (403)
T PLN02953 98 LKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIG 134 (403)
T ss_pred HHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHH
Confidence 4688888888876665444444333433333333333
No 42
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=23.46 E-value=1.8e+02 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhhcccc
Q 031291 80 YSRTFLSIIGGVIAGILGFT 99 (162)
Q Consensus 80 ~iR~~~sll~Gi~AGILGLt 99 (162)
..||++.+++|++.|+.-.-
T Consensus 18 T~RQl~~l~~~~~~~~~~~~ 37 (93)
T PF12666_consen 18 TLRQLICLAIGALVGVGVYL 37 (93)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 57999999988888865443
No 43
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=22.91 E-value=1.5e+02 Score=21.85 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhccccchhH
Q 031291 85 LSIIGGVIAGILGFTGLMG 103 (162)
Q Consensus 85 ~sll~Gi~AGILGLtGl~G 103 (162)
++++.|..|+++++..-..
T Consensus 25 l~i~~g~la~~l~~g~~~~ 43 (94)
T PRK13823 25 LVMFSGLLAGILIFVAQTW 43 (94)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777788776554433
No 44
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=22.54 E-value=1.9e+02 Score=24.97 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 031291 76 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSV 116 (162)
Q Consensus 76 ~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~ 116 (162)
|.+.| -++.-+++|++++.--=-++.|.++|+++..+..+
T Consensus 108 Dslf~-~tl~pI~~~i~~~la~~Gn~lGpil~~~~~~~~~~ 147 (264)
T PF03613_consen 108 DSLFW-GTLRPILASIAASLALQGNILGPILFLLLYNIIHF 147 (264)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 44666 45566667777776655678999999888777754
No 45
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=1.8e+02 Score=21.16 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccch
Q 031291 76 KVIYYSRTFLSIIGGVIAGILGFTGL 101 (162)
Q Consensus 76 ~vl~~iR~~~sll~Gi~AGILGLtGl 101 (162)
+.+.-+-.++.++.|+=||++|++++
T Consensus 4 ~~i~~~sllLvIiGalNWGLvG~f~f 29 (79)
T COG2155 4 KIIRGLSLLLVILGALNWGLVGLFGF 29 (79)
T ss_pred hHHHHHHHHHHHHhhhhhceeeeehh
Confidence 34555666788899999999999985
No 46
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.22 E-value=76 Score=26.09 Aligned_cols=6 Identities=33% Similarity=0.910 Sum_probs=2.5
Q ss_pred HHHHHH
Q 031291 145 LMSFVL 150 (162)
Q Consensus 145 l~tFVL 150 (162)
+..|++
T Consensus 55 lInFlI 60 (205)
T PRK06231 55 LIAFSI 60 (205)
T ss_pred HHHHHH
Confidence 344443
No 47
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=22.05 E-value=1.9e+02 Score=21.85 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHHHH-HHHHhc-----Ccccccccc-hhhHhhhhhhhhHHHHHHHHHhhccc
Q 031291 100 GLMGFVFYFLIMAITSVC-LMAKAK-----FSVHSYFDS-WNRILLDGFLGGLMSFVLFWTFAYDI 158 (162)
Q Consensus 100 Gl~GFify~l~~~lis~l-~~~k~~-----~~~~~YF~~-~~~l~~eG~~~gl~tFVL~WTL~Y~l 158 (162)
.++||+.|+++.++..+. +.+... .---.|+++ .|.+....++--++.|...--..|++
T Consensus 4 e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~ 69 (126)
T PF08510_consen 4 EYYGFVLYILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVGYPAYNL 69 (126)
T ss_pred eeeehHHHHHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998876666643 222221 112256664 35676666554455555444444443
No 48
>PRK11677 hypothetical protein; Provisional
Probab=22.01 E-value=71 Score=25.10 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhhc
Q 031291 80 YSRTFLSIIGGVIAGIL 96 (162)
Q Consensus 80 ~iR~~~sll~Gi~AGIL 96 (162)
|+=.++++++|++.|++
T Consensus 3 W~~a~i~livG~iiG~~ 19 (134)
T PRK11677 3 WEYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65566666666666654
No 49
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=21.56 E-value=1.9e+02 Score=19.05 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=11.1
Q ss_pred HhhHHHHHH-HHHHHHHHHHHhhhhcccc
Q 031291 72 QSNMKVIYY-SRTFLSIIGGVIAGILGFT 99 (162)
Q Consensus 72 ~~N~~vl~~-iR~~~sll~Gi~AGILGLt 99 (162)
++|+...+. +|.+.+++. ++.|++++.
T Consensus 2 ~~Nvg~~dR~~R~~~G~~l-~~~~~~~~~ 29 (66)
T PF11127_consen 2 KKNVGTTDRIVRIIIGIVL-LALGLLGLF 29 (66)
T ss_pred CCCcchHHHHHHHHHHHHH-HHHHHHhcc
Confidence 445544433 344333333 333444443
No 50
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=21.52 E-value=2e+02 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 031291 79 YYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITS 115 (162)
Q Consensus 79 ~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis 115 (162)
--.=++=++.+|+.+|++|+.-+.-.++..+++++.+
T Consensus 135 ~iAlSiDalavG~s~~~~g~~~~~~~~~igivs~i~~ 171 (206)
T TIGR02840 135 GIALSLDAFGAGIGASLLGLNPLATSILVAVMSFIFV 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3344455789999999999865554444444443333
No 51
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=21.35 E-value=97 Score=23.89 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred CccccccChHHHHhhHHHHHHHHHHHHHHHHHhhhhcc
Q 031291 60 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILG 97 (162)
Q Consensus 60 ~~~~~~~~~env~~N~~vl~~iR~~~sll~Gi~AGILG 97 (162)
..-+..-+.+.+...++.-.+.-.+.++++|++ |+||
T Consensus 124 ~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~-~v~~ 160 (160)
T PF12483_consen 124 PFFISTKSEEELIRSLRSSARWWKWLAIALGVV-GVLG 160 (160)
T ss_pred cEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE-EEeC
Confidence 556778888999988887777777888888888 8876
No 52
>COG3619 Predicted membrane protein [Function unknown]
Probab=21.14 E-value=2.8e+02 Score=23.50 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 031291 72 QSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSV 116 (162)
Q Consensus 72 ~~N~~vl~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~lis~ 116 (162)
+++.+.+.+.--+++.++|.++|.+ |+-+.|-....+...++..
T Consensus 166 ~~~~~~~~~~~~il~f~~GAi~g~l-l~~~~g~~al~~~~~~i~~ 209 (226)
T COG3619 166 EKLRDWLIYLSLILSFIVGAICGAL-LTLFFGLKALWVVAALILA 209 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHH
Confidence 4555666677777889999999999 6666665444444444443
No 53
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.06 E-value=1.7e+02 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=12.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhc
Q 031291 71 LQSNMKVIYYSRTFLSIIGGVIAGIL 96 (162)
Q Consensus 71 v~~N~~vl~~iR~~~sll~Gi~AGIL 96 (162)
+.++.+.|.-+..-+-=+.|++.|.+
T Consensus 36 i~~~~~~l~~I~~n~kW~~r~iiGai 61 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIWRTIIGAI 61 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445545544444455554444
No 54
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=20.92 E-value=1.5e+02 Score=27.25 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=22.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCcccccccch
Q 031291 99 TGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSW 133 (162)
Q Consensus 99 tGl~GFify~l~~~lis~l~~~k~~~~~~~YF~~~ 133 (162)
..+.-|+.|++.++++......|.+ +.++|+.+.
T Consensus 4 ~~~ii~~iyli~~~~ig~~a~~~~~-~~~dy~~~g 37 (493)
T COG0591 4 ILLIIFLIYLILMLLIGLYAYRKTK-SLEDYFLGG 37 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccC-chHHHhccC
Confidence 4556677888877777765544444 778888743
No 55
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.87 E-value=4.5e+02 Score=22.53 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=18.4
Q ss_pred HHHHHHHhhhhcccc--c------hhHHHHHHHHHHHHHHH
Q 031291 85 LSIIGGVIAGILGFT--G------LMGFVFYFLIMAITSVC 117 (162)
Q Consensus 85 ~sll~Gi~AGILGLt--G------l~GFify~l~~~lis~l 117 (162)
+.+..-++|||.|.- + -.|+...++++++++.+
T Consensus 273 IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~ 313 (324)
T PRK09546 273 VFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG 313 (324)
T ss_pred HHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH
Confidence 334446777777754 2 14666555566555543
No 56
>PF13997 YqjK: YqjK-like protein
Probab=20.43 E-value=1.4e+02 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhh
Q 031291 70 NLQSNMKVIYYSRTFLSIIGGVIAG 94 (162)
Q Consensus 70 nv~~N~~vl~~iR~~~sll~Gi~AG 94 (162)
-+-+.-+.+.++|....+.+|++|-
T Consensus 25 ~~Dr~w~~l~~lr~~~~l~~g~~a~ 49 (73)
T PF13997_consen 25 PYDRGWQTLRSLRRHPILGSGVLAL 49 (73)
T ss_pred HHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 3456677899999999888887763
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.38 E-value=4.5e+02 Score=22.07 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=15.7
Q ss_pred HHHHhhhhcccc--------chhHHHHHHHHHHHHHHH
Q 031291 88 IGGVIAGILGFT--------GLMGFVFYFLIMAITSVC 117 (162)
Q Consensus 88 l~Gi~AGILGLt--------Gl~GFify~l~~~lis~l 117 (162)
..-++||+.|.- .-+|+...++++++++.+
T Consensus 270 P~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 270 PLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred HHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH
Confidence 345566666532 225666665555555543
Done!