Query 031291
Match_columns 162
No_of_seqs 112 out of 253
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 51.2 14 0.00049 25.3 3.4 26 84-113 10-35 (79)
2 2l2t_A Receptor tyrosine-prote 47.3 9.3 0.00032 23.8 1.7 13 85-97 10-22 (44)
3 2k9j_B Integrin beta-3; transm 42.8 42 0.0014 20.4 4.3 23 84-110 9-31 (43)
4 2ks1_B Epidermal growth factor 38.1 6.1 0.00021 24.6 -0.2 12 86-97 12-23 (44)
5 1afo_A Glycophorin A; integral 37.9 13 0.00044 22.9 1.3 14 84-97 12-25 (40)
6 1rh5_B Preprotein translocase 32.7 70 0.0024 21.8 4.5 19 98-116 47-65 (74)
7 2kr6_A Presenilin-1; protease, 31.7 29 0.001 27.5 2.8 8 86-93 99-106 (176)
8 2l34_A TYRO protein tyrosine k 22.4 45 0.0015 19.3 1.7 23 86-108 7-29 (33)
9 3mp7_B Preprotein translocase 22.2 1.1E+02 0.0037 20.0 3.8 30 79-113 29-58 (61)
10 2ww9_B Protein transport prote 21.9 43 0.0015 23.3 1.8 16 98-113 60-75 (80)
11 3j00_Z Cell division protein F 21.2 84 0.0029 22.1 3.3 18 101-118 4-21 (98)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.18 E-value=14 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 031291 84 FLSIIGGVIAGILGFTGLMGFVFYFLIMAI 113 (162)
Q Consensus 84 ~~sll~Gi~AGILGLtGl~GFify~l~~~l 113 (162)
+.+++.|+++||| +.|++..++.-++
T Consensus 10 ~~~Iv~gvi~gil----liGllllliwk~~ 35 (79)
T 2knc_B 10 ILVVLLSVMGAIL----LIGLAALLIWKLL 35 (79)
T ss_dssp SHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3577788888887 3455554444333
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.26 E-value=9.3 Score=23.84 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=8.5
Q ss_pred HHHHHHHhhhhcc
Q 031291 85 LSIIGGVIAGILG 97 (162)
Q Consensus 85 ~sll~Gi~AGILG 97 (162)
.++.+|++.|++.
T Consensus 10 ~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 10 PLIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHH
Confidence 4566777777664
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=42.75 E-value=42 Score=20.41 Aligned_cols=23 Identities=26% Similarity=0.532 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHH
Q 031291 84 FLSIIGGVIAGILGFTGLMGFVFYFLI 110 (162)
Q Consensus 84 ~~sll~Gi~AGILGLtGl~GFify~l~ 110 (162)
+.+++.|+++|++ +.|++..++.
T Consensus 9 ~~~Iv~gvi~~iv----liGl~lLliw 31 (43)
T 2k9j_B 9 ILVVLLSVMGAIL----LIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred EeehHHHHHHHHH----HHHHHHHHHH
Confidence 4677888888877 3454444443
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.06 E-value=6.1 Score=24.61 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=6.2
Q ss_pred HHHHHHhhhhcc
Q 031291 86 SIIGGVIAGILG 97 (162)
Q Consensus 86 sll~Gi~AGILG 97 (162)
++.+|++.|++.
T Consensus 12 ~IA~gVVgGv~~ 23 (44)
T 2ks1_B 12 SIATGMVGALLL 23 (44)
T ss_dssp SSTHHHHHHHHH
T ss_pred eEEeehhHHHHH
Confidence 345555555553
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=37.94 E-value=13 Score=22.88 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhcc
Q 031291 84 FLSIIGGVIAGILG 97 (162)
Q Consensus 84 ~~sll~Gi~AGILG 97 (162)
++.++.|+.|||+|
T Consensus 12 i~lII~~vmaGiIG 25 (40)
T 1afo_A 12 ITLIIFGVMAGVIG 25 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56788999999986
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=32.66 E-value=70 Score=21.75 Aligned_cols=19 Identities=16% Similarity=0.492 Sum_probs=12.3
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 031291 98 FTGLMGFVFYFLIMAITSV 116 (162)
Q Consensus 98 LtGl~GFify~l~~~lis~ 116 (162)
+-|+.||+.+++...+.+.
T Consensus 47 imG~IGfiIkli~ipIn~i 65 (74)
T 1rh5_B 47 LLGIIGYIIHVPATYIKGI 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3467788888776655553
No 7
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=31.75 E-value=29 Score=27.51 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=5.1
Q ss_pred HHHHHHhh
Q 031291 86 SIIGGVIA 93 (162)
Q Consensus 86 sll~Gi~A 93 (162)
|+++|=+|
T Consensus 99 SvLVgkAa 106 (176)
T 2kr6_A 99 SVLVGKAS 106 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666665
No 8
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=22.40 E-value=45 Score=19.34 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=12.2
Q ss_pred HHHHHHhhhhccccchhHHHHHH
Q 031291 86 SIIGGVIAGILGFTGLMGFVFYF 108 (162)
Q Consensus 86 sll~Gi~AGILGLtGl~GFify~ 108 (162)
+.++|++-|-+-.|.+.+.++|+
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhh
Confidence 34566666655555455554443
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=22.19 E-value=1.1e+02 Score=19.96 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 031291 79 YYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 113 (162)
Q Consensus 79 ~~iR~~~sll~Gi~AGILGLtGl~GFify~l~~~l 113 (162)
++.+...+..+|++ +-|+.||+.+++..++
T Consensus 29 Ef~~iak~~~iG~~-----i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 29 TYKRAAKITGLGII-----LIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 34444444444432 3356778888776554
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=21.90 E-value=43 Score=23.27 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=8.9
Q ss_pred ccchhHHHHHHHHHHH
Q 031291 98 FTGLMGFVFYFLIMAI 113 (162)
Q Consensus 98 LtGl~GFify~l~~~l 113 (162)
+-|+.||+.+++...+
T Consensus 60 imG~IGfiIkLI~iPI 75 (80)
T 2ww9_B 60 AVGIIGYAIKLIHIPI 75 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4456666666555443
No 11
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=21.21 E-value=84 Score=22.14 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 031291 101 LMGFVFYFLIMAITSVCL 118 (162)
Q Consensus 101 l~GFify~l~~~lis~l~ 118 (162)
+.|.+||+++...+..+.
T Consensus 4 ~~G~~F~l~Vl~~l~~~~ 21 (98)
T 3j00_Z 4 LAGILFLLTVLTTVLVSG 21 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHH
Confidence 568888877655544443
Done!