Query 031291
Match_columns 162
No_of_seqs 112 out of 253
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 19:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031291.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031291hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 45.4 14 0.001 22.6 4.0 23 93-116 32-54 (56)
2 d1nekc_ f.21.2.2 (C:) Succinat 38.0 25 0.0019 23.7 5.0 18 139-156 66-83 (129)
3 d1vf5c3 f.23.23.1 (C:250-286) 29.3 33 0.0024 19.2 3.5 21 101-121 6-26 (37)
4 d1q90a3 f.23.23.1 (A:248-292) 29.1 28 0.002 20.4 3.3 21 101-121 5-25 (45)
5 d1q90g_ f.23.26.1 (G:) PetG su 28.9 7.3 0.00053 21.1 0.5 14 86-99 4-17 (30)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 24.7 16 0.0012 19.6 1.5 18 78-96 6-23 (32)
7 d1rh1a2 f.1.1.1 (A:313-511) Co 23.4 31 0.0022 25.9 3.5 23 85-107 152-175 (199)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 23.2 16 0.0012 20.2 1.3 19 88-107 6-24 (34)
9 d1cola_ f.1.1.1 (A:) Colicin A 10.4 1.6E+02 0.011 21.7 4.5 54 11-77 40-96 (197)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.9 1.2E+02 0.0089 22.7 3.8 32 99-130 25-56 (248)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=45.37 E-value=14 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=15.1
Q ss_pred hhhccccchhHHHHHHHHHHHHHH
Q 031291 93 AGILGFTGLMGFVFYFLIMAITSV 116 (162)
Q Consensus 93 AGILGLtGl~GFify~l~~~lis~ 116 (162)
+|++ +-|+.||+.|++...+-+.
T Consensus 32 iG~~-i~G~IGf~I~li~~~i~~i 54 (56)
T d1rh5b_ 32 LGIS-LLGIIGYIIHVPATYIKGI 54 (56)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHhhhh
Confidence 3444 6677888888776665543
No 2
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=37.96 E-value=25 Score=23.66 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHHhhc
Q 031291 139 DGFLGGLMSFVLFWTFAY 156 (162)
Q Consensus 139 eG~~~gl~tFVL~WTL~Y 156 (162)
+..+..+.-|.+.|.++|
T Consensus 66 ~~~~~~~~~~~~~~~~~y 83 (129)
T d1nekc_ 66 GSFFVKFIMWGILTALAY 83 (129)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777777787776
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=29.26 E-value=33 Score=19.23 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 031291 101 LMGFVFYFLIMAITSVCLMAK 121 (162)
Q Consensus 101 l~GFify~l~~~lis~l~~~k 121 (162)
+.|++.|++...+.-.+++.|
T Consensus 6 v~gl~~F~~~v~laQi~lVlK 26 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLILK 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888777777666664
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=29.05 E-value=28 Score=20.35 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 031291 101 LMGFVFYFLIMAITSVCLMAK 121 (162)
Q Consensus 101 l~GFify~l~~~lis~l~~~k 121 (162)
+.|+++|++..++.-.+++.|
T Consensus 5 v~gll~F~~~v~laQi~LVLK 25 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLK 25 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888777766666654
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=28.95 E-value=7.3 Score=21.08 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=11.5
Q ss_pred HHHHHHhhhhcccc
Q 031291 86 SIIGGVIAGILGFT 99 (162)
Q Consensus 86 sll~Gi~AGILGLt 99 (162)
.+++|++-|+++.|
T Consensus 4 ~ll~GivlGlipiT 17 (30)
T d1q90g_ 4 PLLCGIVLGLVPVT 17 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHH
Confidence 47889999998876
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.68 E-value=16 Score=19.61 Aligned_cols=18 Identities=28% Similarity=0.853 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 031291 78 IYYSRTFLSIIGGVIAGIL 96 (162)
Q Consensus 78 l~~iR~~~sll~Gi~AGIL 96 (162)
++|+ .++++.+|++.||+
T Consensus 6 vfyi-vfialffgiavgii 23 (32)
T d2e74e1 6 VFYI-VFIALFFGIAVGII 23 (32)
T ss_dssp HHHH-HHHHHHHHHHHHHH
T ss_pred eHHH-HHHHHHHHHHhhhe
Confidence 4444 46788899988875
No 7
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.44 E-value=31 Score=25.93 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhcccc-chhHHHHH
Q 031291 85 LSIIGGVIAGILGFT-GLMGFVFY 107 (162)
Q Consensus 85 ~sll~Gi~AGILGLt-Gl~GFify 107 (162)
.|++.|...|++|+. ...|++..
T Consensus 152 fs~~~g~~~~~~g~~~t~vgi~gi 175 (199)
T d1rh1a2 152 FSLTLGSALIAFGLSATVVGFVGV 175 (199)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHH
Confidence 456666667777775 44555543
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.19 E-value=16 Score=20.23 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=10.4
Q ss_pred HHHHhhhhccccchhHHHHH
Q 031291 88 IGGVIAGILGFTGLMGFVFY 107 (162)
Q Consensus 88 l~Gi~AGILGLtGl~GFify 107 (162)
+.|.++|+. .-++.|+.||
T Consensus 6 lv~tv~G~~-vi~~vG~FfY 24 (34)
T d2axtj1 6 IVATVAGMG-VIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHH-HHHHHHHHHH
T ss_pred Eeeehhhhh-hHhheeeeee
Confidence 456666654 3445555555
No 9
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=10.43 E-value=1.6e+02 Score=21.75 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=30.3
Q ss_pred ccCCCCCCCCccchhhhhhccccCCCchh---hHhhhccCCCccccccCCCCCccccccChHHHHhhHHH
Q 031291 11 NTTNNKNKDSSLINSQQQSVESNSCSPIS---WVEDMATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKV 77 (162)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ma~~~~~~~~~~~~~~~~~~~~~~~env~~N~~v 77 (162)
+-.|+..|.-.+.++-.++.|--.-.|.. ..+|.|- .+-+++++.+.+.+|++.
T Consensus 40 ~~K~fqGK~IRs~~dAl~s~eK~~~~lnkK~s~~Dr~AI-------------~nAl~sid~~~ma~nl~~ 96 (197)
T d1cola_ 40 NIKNFQGKTIRSFDDAMASLNKITANPAMKINKADRDAL-------------VNAWKHVDAQDMANKLGN 96 (197)
T ss_dssp HHHTCTTCCCCCHHHHHHHHHHHHTSGGGCCCHHHHHHH-------------HHHHHTCCHHHHHHHHHH
T ss_pred HHhhccCCccCCHHHHHHHHHHHHhchhhhccHhhHHHH-------------HHHHHhcCHHHHHHHHHH
Confidence 33455566666667776666654443332 3333222 234567777778887765
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=1.2e+02 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=12.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 031291 99 TGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 130 (162)
Q Consensus 99 tGl~GFify~l~~~lis~l~~~k~~~~~~~YF 130 (162)
.|-++|+.++++.+++....|...+..|.+|.
T Consensus 25 ~~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 25 QGEYLFAITTLILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHSSSCCTTHHHH
T ss_pred cchHHHHHHHHHHHHheEEEEEccCccceehh
Confidence 34444444444333333222221234444443
Done!