BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031293
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
 pdb|1PUI|B Chain B, Structure Of Engb Gtpase
          Length = 210

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 82/155 (52%), Gaps = 5/155 (3%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY 61
           LN LT Q  + RTS  PG TQ IN F++     LVDLPGYG+A   EE+K  W+  + EY
Sbjct: 43  LNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102

Query: 62  VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAM-- 119
           +  R SL+ + +L+D +  +K  D ++I     S     V+LTK D +     AR+A   
Sbjct: 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL--ASGARKAQLN 160

Query: 120 QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154
            + E++ A N  VQ V   SS    G+  LR  L 
Sbjct: 161 MVREAVLAFNGDVQ-VETFSSLKKQGVDKLRQKLD 194


>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
           Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
           COMPLEX WITH GDP
 pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
           Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
           COMPLEX WITH GDP
 pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
           Biogenesis Gtp- Binding Protein Engb
          Length = 195

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 9/161 (5%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
           +LNAL  +  +   S  PG T++INF+ + +K   VDLPGYG+A   ++ +  W+ LV++
Sbjct: 39  LLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHEL--ISLMERSQTKYQVVLTKTDTVFPIDVARRA 118
           Y   R SL+ V LL+D +  + P+D +L  +  M+     + +VLTK D V    ++ RA
Sbjct: 98  YFKNRWSLQMVFLLVDGR--IPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV---KMSERA 152

Query: 119 MQIEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIAR 158
            ++EE  K  +   +  ++  SS +G GI  L  ++S + +
Sbjct: 153 KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193


>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
 pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
 pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
           Complexed With Gdp
 pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
 pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
          Length = 195

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 62/109 (56%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
            +N+L  +  + RTS KPG TQT+NF+ +  +L  VD+PGYGFA   +  ++AW  +++ 
Sbjct: 39  FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98

Query: 61  YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109
           Y++TR  LK V  ++D +      D ++   ++       V+ TK D +
Sbjct: 99  YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147


>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
           From Burkholderia Thailandensis
 pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
           From Burkholderia Thailandensis
          Length = 223

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 4/110 (3%)

Query: 2   LNALTRQWGVVRTSDKPGLTQTINFFKLGTKL----CLVDLPGYGFAYAKEEVKDAWEEL 57
           +N L  Q  +   S  PG TQ IN+F +G        LVDLPGYG+A      K  WE+L
Sbjct: 46  INVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105

Query: 58  VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107
           +  Y+ TR  L  + L++D +  +   D  +I     +      +LTK D
Sbjct: 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCD 155


>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With Gdp
 pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With Gdp
 pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With Gdp
 pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With Gdp
 pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis, Apo Form
 pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis, Apo Form
 pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis, Apo Form
 pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis, Apo Form
 pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With The Gtp
           Analogue Gppnhp
 pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With The Gtp
           Analogue Gppnhp
 pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With The Gtp
           Analogue Gppnhp
 pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
           From Methanococcus Maripaludis In Complex With The Gtp
           Analogue Gppnhp
          Length = 482

 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 17/143 (11%)

Query: 15  SDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRV 71
           S K G+T  I F  FKL   ++ LVD PG+              +L++  VS    +   
Sbjct: 54  SQKRGITIDIGFSAFKLENYRITLVDAPGHA-------------DLIRAVVSAADIIDLA 100

Query: 72  CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 131
            +++D K G K +  E + +++       VV+TK+D     ++ R  M ++  L++ ++L
Sbjct: 101 LIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160

Query: 132 VQ-PVMMVSSKSGAGIRSLRTVL 153
               ++ +S+K+G G+  L+ ++
Sbjct: 161 KNSSIIPISAKTGFGVDELKNLI 183


>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
           Iransporter
          Length = 168

 Score = 34.7 bits (78), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 1   MLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDA 53
           + NALT        W  V    K G+     F   G  + L+DLPG Y   Y+  + K A
Sbjct: 21  LFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGTYSLGYSSIDEKIA 75

Query: 54  WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113
            + L+K           V L+ D+   V P +  L  L+E  + + +V+L  T     ID
Sbjct: 76  RDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEKKVILAMT----AID 121

Query: 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
            A++     +  +    L  PV+  SS +G G+  L+    KI  +A+
Sbjct: 122 EAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYAQ 166


>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form Ii
 pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gmppnp Form
 pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gmppnp Form
 pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Apo Form
 pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Apo Form
          Length = 258

 Score = 34.3 bits (77), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 1   MLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDA 53
           + NALT        W  V    K G+     F   G  + L+DLPG Y   Y+  + K A
Sbjct: 21  LFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGTYSLGYSSIDEKIA 75

Query: 54  WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113
            + L+K           V L+ D+   V P +  L  L+E  + + +V+L  T     ID
Sbjct: 76  RDYLLKG------DADLVILVADS---VNP-EQSLYLLLEILEMEKKVILAMT----AID 121

Query: 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
            A++     +  +    L  PV+  SS +G G+  L+    KI  +A+
Sbjct: 122 EAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYAQ 166


>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
          Length = 282

 Score = 33.9 bits (76), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 1   MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 40
           ++N L ++  + +T D+PG+T +  + K+G +L L+D PG
Sbjct: 136 LINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174


>pdb|1VDR|A Chain A, Dihydrofolate Reductase
 pdb|1VDR|B Chain B, Dihydrofolate Reductase
          Length = 162

 Score = 30.8 bits (68), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 100 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL------RTVL 153
           Q+V+++++  F +D A RA  +EE++    SL      V    GA I +L      R VL
Sbjct: 61  QIVMSRSERSFSVDTAHRAASVEEAVDIAASLDAETAYV--IGGAAIYALFQPHLDRMVL 118

Query: 154 SKI 156
           S++
Sbjct: 119 SRV 121


>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
 pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
          Length = 162

 Score = 30.8 bits (68), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 100 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL------RTVL 153
           Q+V+++++  F +D A RA  +EE++    SL      V    GA I +L      R VL
Sbjct: 61  QIVMSRSERSFSVDTAHRAASVEEAVDIAASLDAETAYV--IGGAAIYALFQPHLDRMVL 118

Query: 154 SKI 156
           S++
Sbjct: 119 SRV 121


>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form I
 pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
           Feob Iron Iransporter In Gdp Form I
          Length = 258

 Score = 29.6 bits (65), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 29/168 (17%)

Query: 1   MLNALT------RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG-YGFAYAKEEVKDA 53
           + NALT        W  V    K G+     F   G  + L+DLPG Y   Y+  + K A
Sbjct: 21  LFNALTGTKQYVANWPGVTVEKKEGV-----FTYKGYTINLIDLPGTYSLGYSSIDEKIA 75

Query: 54  WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113
            + L+K           V L+ D+   V P     + L      K +V+L  T     ID
Sbjct: 76  RDYLLKG------DADLVILVADS---VNPEQSLYLLLEILEXEK-KVILAXT----AID 121

Query: 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAK 161
            A++     +  +    L  PV+  SS +G G+  L+    KI  +A+
Sbjct: 122 EAKKTGXKIDRYELQKHLGIPVVFTSSVTGEGLEELK---EKIVEYAQ 166


>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
 pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
 pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
          Length = 301

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 88  LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147
            + L E+++ +  +V+ K D ++  D  R+  ++EE      S + P++  S+K+G GI 
Sbjct: 107 FLVLAEKNELETVMVINKMD-LYDEDDLRKVRELEEIY----SGLYPIVKTSAKTGMGIE 161

Query: 148 SLRTVL-SKIARFA 160
            L+  L  KI+  A
Sbjct: 162 ELKEYLKGKISTMA 175


>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
 pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
          Length = 270

 Score = 27.7 bits (60), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 13/127 (10%)

Query: 6   TRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE----Y 61
            R+  + +T +   +   I    +  KL ++D PG+G     E   +  E+ + E    +
Sbjct: 35  NREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKF 94

Query: 62  VSTRVSLKRVCLLIDTK-----WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 116
           +   V++ R   + DT+     + + P  H L  L      ++   L+K   + P+    
Sbjct: 95  LKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL----DLEFMKHLSKVVNIIPVIAKA 150

Query: 117 RAMQIEE 123
             M +EE
Sbjct: 151 DTMTLEE 157


>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
          Length = 521

 Score = 26.2 bits (56), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 151 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 209


>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
 pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
           Methanococcus Maripaludis
          Length = 543

 Score = 26.2 bits (56), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 151 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 209


>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
          Length = 491

 Score = 26.2 bits (56), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 145 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 203


>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
           Methanococcus Maripaludis
 pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
           From Methanococcus Maripaludis
 pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
           From Methanococcus Maripaludis
 pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
           From Methanococcus Maripaludis
 pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
           From Methanococcus Maripaludis
 pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
           Methanococcus Maripaludis
 pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
           Methanococcus Maripaludis
 pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
           Methanococcus Maripaludis
 pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
           Methanococcus Maripaludis
          Length = 543

 Score = 26.2 bits (56), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 151 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 209


>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
 pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
 pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
 pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
 pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
 pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
 pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
 pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
 pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
 pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
 pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
 pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
 pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
 pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
 pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
 pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
 pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
          Length = 491

 Score = 26.2 bits (56), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 145 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 203


>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
          Length = 491

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 145 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 203


>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
 pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
 pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
 pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
 pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
 pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
 pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
 pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
 pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
 pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
 pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
 pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
 pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
 pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
 pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
 pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
 pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
 pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
          Length = 513

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 145 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 203


>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
 pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
 pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
 pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
 pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
 pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
 pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
 pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
 pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
 pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
 pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
 pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
 pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
 pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
 pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
 pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
 pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
 pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
 pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
 pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
 pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
 pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
 pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
 pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
 pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
 pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
 pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
 pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
 pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
 pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
 pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
 pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
          Length = 513

 Score = 26.2 bits (56), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 31  TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89
           TK+ +  + G G   AKE++ +   E V   V     + +  + I+ K G    D ELI
Sbjct: 145 TKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELI 203


>pdb|2L69|A Chain A, Solution Nmr Structure Of De Novo Designed Protein,
          P-Loop Ntpase Fold, Northeast Structural Genomics
          Consortium Target Or28
          Length = 134

 Score = 26.2 bits (56), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 4/35 (11%)

Query: 48 EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK 82
          +E+KD+ EELVK+Y +T V    V ++ D +W  K
Sbjct: 36 QELKDSIEELVKKYNATIV----VVVVDDKEWAEK 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,172,457
Number of Sequences: 62578
Number of extensions: 151349
Number of successful extensions: 470
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 33
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)