Query 031293
Match_columns 162
No_of_seqs 119 out of 1755
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0218 Predicted GTPase [Gene 100.0 5.6E-32 1.2E-36 179.5 17.7 158 1-158 40-197 (200)
2 TIGR03598 GTPase_YsxC ribosome 99.9 7.1E-23 1.5E-27 137.8 15.9 146 1-147 34-179 (179)
3 PF02421 FeoB_N: Ferrous iron 99.9 4.1E-24 9E-29 139.1 7.1 137 1-153 16-156 (156)
4 COG1160 Predicted GTPases [Gen 99.9 4.4E-23 9.6E-28 151.5 12.7 143 1-157 19-164 (444)
5 COG1159 Era GTPase [General fu 99.9 4.1E-22 8.9E-27 139.4 14.0 147 1-158 22-172 (298)
6 PRK00454 engB GTP-binding prot 99.9 3.6E-21 7.8E-26 131.1 18.1 155 1-158 40-194 (196)
7 COG1160 Predicted GTPases [Gen 99.9 1.7E-22 3.8E-27 148.4 11.7 153 1-158 194-351 (444)
8 PRK10512 selenocysteinyl-tRNA- 99.9 5.9E-21 1.3E-25 148.6 16.2 145 1-158 16-166 (614)
9 TIGR00436 era GTP-binding prot 99.9 9.2E-21 2E-25 135.2 15.0 146 1-158 16-164 (270)
10 PF00009 GTP_EFTU: Elongation 99.9 6.4E-21 1.4E-25 129.3 13.3 128 17-158 51-187 (188)
11 cd04171 SelB SelB subfamily. 99.9 4.8E-20 1E-24 121.9 15.6 141 1-155 16-163 (164)
12 cd01876 YihA_EngB The YihA (En 99.9 1.6E-19 3.5E-24 119.7 17.9 155 1-156 15-169 (170)
13 cd01889 SelB_euk SelB subfamil 99.9 2.3E-20 4.9E-25 127.0 13.4 145 1-158 16-186 (192)
14 TIGR00475 selB selenocysteine- 99.9 3.2E-20 7E-25 144.0 15.6 145 1-158 16-166 (581)
15 PRK04213 GTP-binding protein; 99.8 1.6E-19 3.4E-24 123.6 16.4 153 1-159 25-193 (201)
16 TIGR03594 GTPase_EngA ribosome 99.8 9.1E-20 2E-24 137.9 15.8 153 1-158 188-344 (429)
17 PTZ00327 eukaryotic translatio 99.8 4E-20 8.7E-25 139.4 12.9 114 32-158 118-233 (460)
18 PRK00093 GTP-binding protein D 99.8 2.2E-19 4.7E-24 136.0 16.7 153 1-158 189-344 (435)
19 COG0486 ThdF Predicted GTPase 99.8 2.3E-20 5E-25 137.6 10.4 142 1-159 233-377 (454)
20 cd01894 EngA1 EngA1 subfamily. 99.8 3.2E-19 6.9E-24 117.1 14.8 141 1-156 13-156 (157)
21 PRK03003 GTP-binding protein D 99.8 2.5E-19 5.5E-24 136.6 15.4 153 1-158 227-382 (472)
22 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.4E-19 5.3E-24 124.3 13.9 114 30-156 83-221 (224)
23 PRK15494 era GTPase Era; Provi 99.8 1.9E-19 4.2E-24 131.9 13.8 146 1-158 68-216 (339)
24 cd01888 eIF2_gamma eIF2-gamma 99.8 4.4E-19 9.5E-24 121.6 14.6 115 31-158 83-199 (203)
25 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.3E-19 1.4E-23 119.9 14.8 129 15-156 46-191 (195)
26 PRK00089 era GTPase Era; Revie 99.8 6.5E-19 1.4E-23 127.1 14.6 147 1-158 21-171 (292)
27 cd01895 EngA2 EngA2 subfamily. 99.8 2.7E-18 5.9E-23 114.3 14.6 151 1-156 18-173 (174)
28 PRK12299 obgE GTPase CgtA; Rev 99.8 4.2E-18 9E-23 124.3 15.2 148 1-161 174-331 (335)
29 cd00881 GTP_translation_factor 99.8 1.8E-18 3.9E-23 116.9 12.4 128 18-158 46-187 (189)
30 COG3276 SelB Selenocysteine-sp 99.8 2.3E-18 4.9E-23 126.1 13.6 141 1-157 16-161 (447)
31 PRK09518 bifunctional cytidyla 99.8 4.6E-18 1E-22 135.2 16.0 153 1-158 466-621 (712)
32 cd01879 FeoB Ferrous iron tran 99.8 3.8E-18 8.2E-23 112.2 13.1 142 1-157 12-156 (158)
33 PRK12298 obgE GTPase CgtA; Rev 99.8 3.6E-18 7.7E-23 126.9 14.3 146 1-158 175-333 (390)
34 TIGR03594 GTPase_EngA ribosome 99.8 3.7E-18 8.1E-23 129.1 13.8 143 1-158 15-160 (429)
35 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.5E-18 2.1E-22 111.4 13.7 142 1-158 16-166 (168)
36 TIGR02729 Obg_CgtA Obg family 99.8 2.1E-18 4.6E-23 125.7 11.2 143 1-157 173-328 (329)
37 TIGR03680 eif2g_arch translati 99.8 6.4E-18 1.4E-22 126.7 13.3 115 31-158 80-196 (406)
38 cd01898 Obg Obg subfamily. Th 99.8 2.4E-18 5.1E-23 114.6 9.8 143 1-156 16-169 (170)
39 PRK12297 obgE GTPase CgtA; Rev 99.8 1E-17 2.2E-22 125.3 13.9 141 1-158 174-327 (424)
40 PRK12736 elongation factor Tu; 99.8 2E-17 4.3E-22 123.7 15.1 132 14-158 55-201 (394)
41 PRK12296 obgE GTPase CgtA; Rev 99.8 9.8E-18 2.1E-22 126.9 13.5 144 1-159 175-341 (500)
42 PRK12317 elongation factor 1-a 99.8 5.3E-18 1.2E-22 128.0 11.8 121 15-148 65-195 (425)
43 cd01883 EF1_alpha Eukaryotic e 99.8 1.3E-17 2.9E-22 115.5 12.5 121 14-147 57-194 (219)
44 PRK04000 translation initiatio 99.8 1.3E-17 2.9E-22 125.0 13.4 115 31-158 85-201 (411)
45 PRK03003 GTP-binding protein D 99.8 3.7E-17 8.1E-22 124.8 15.9 143 1-158 54-199 (472)
46 PRK09518 bifunctional cytidyla 99.8 2.8E-17 6E-22 130.8 15.1 143 1-158 291-436 (712)
47 KOG2486 Predicted GTPase [Gene 99.8 1.1E-18 2.4E-23 120.8 5.8 158 1-158 152-316 (320)
48 TIGR02034 CysN sulfate adenyly 99.8 3.1E-17 6.7E-22 123.0 13.9 122 14-148 60-187 (406)
49 COG0370 FeoB Fe2+ transport sy 99.8 1.1E-17 2.5E-22 128.3 11.4 142 1-158 19-164 (653)
50 cd01897 NOG NOG1 is a nucleola 99.8 3.3E-17 7.2E-22 108.9 12.3 144 1-157 16-167 (168)
51 cd04164 trmE TrmE (MnmE, ThdF, 99.8 5.5E-17 1.2E-21 106.4 13.0 137 1-157 17-156 (157)
52 PRK12735 elongation factor Tu; 99.8 4.5E-17 9.8E-22 121.8 13.9 131 14-157 55-202 (396)
53 TIGR03156 GTP_HflX GTP-binding 99.7 3.3E-17 7.1E-22 120.5 12.9 138 1-156 205-350 (351)
54 cd04166 CysN_ATPS CysN_ATPS su 99.7 5.6E-17 1.2E-21 111.6 12.9 121 15-148 58-184 (208)
55 COG2895 CysN GTPases - Sulfate 99.7 2.4E-17 5.2E-22 117.7 11.2 120 15-147 67-192 (431)
56 PRK00093 GTP-binding protein D 99.7 3.8E-17 8.2E-22 123.9 13.0 140 1-155 17-159 (435)
57 cd04163 Era Era subfamily. Er 99.7 1.3E-16 2.9E-21 105.3 14.1 145 1-156 19-167 (168)
58 TIGR00487 IF-2 translation ini 99.7 3.9E-17 8.4E-22 126.7 13.1 139 1-155 103-247 (587)
59 PLN03127 Elongation factor Tu; 99.7 8.6E-17 1.9E-21 121.5 14.4 131 14-157 104-251 (447)
60 TIGR00437 feoB ferrous iron tr 99.7 3.9E-17 8.4E-22 127.2 12.6 142 1-157 10-154 (591)
61 PRK09554 feoB ferrous iron tra 99.7 5.6E-17 1.2E-21 129.1 13.7 143 1-157 19-167 (772)
62 PRK05291 trmE tRNA modificatio 99.7 2.9E-17 6.3E-22 124.4 11.6 137 1-158 231-370 (449)
63 COG0532 InfB Translation initi 99.7 8.6E-17 1.9E-21 120.4 13.7 129 16-158 34-170 (509)
64 PRK05306 infB translation init 99.7 3.4E-17 7.4E-22 130.0 12.2 139 1-156 306-450 (787)
65 CHL00071 tufA elongation facto 99.7 1.1E-16 2.3E-21 120.3 14.3 118 14-144 55-179 (409)
66 CHL00189 infB translation init 99.7 4.3E-17 9.4E-22 128.5 12.7 141 1-157 260-409 (742)
67 TIGR00485 EF-Tu translation el 99.7 1.1E-16 2.4E-21 119.8 14.1 129 14-155 55-198 (394)
68 PTZ00141 elongation factor 1- 99.7 7.9E-17 1.7E-21 121.8 13.4 122 14-148 65-203 (446)
69 KOG1423 Ras-like GTPase ERA [C 99.7 9.6E-17 2.1E-21 112.8 12.7 156 1-158 88-271 (379)
70 COG5257 GCD11 Translation init 99.7 5.1E-17 1.1E-21 114.8 11.4 115 31-158 86-202 (415)
71 COG5256 TEF1 Translation elong 99.7 7.9E-17 1.7E-21 117.3 12.6 123 13-148 64-201 (428)
72 PRK00049 elongation factor Tu; 99.7 2.4E-16 5.2E-21 117.9 15.1 130 15-157 56-202 (396)
73 cd01890 LepA LepA subfamily. 99.7 1.5E-16 3.3E-21 106.8 12.5 109 32-157 68-176 (179)
74 cd01881 Obg_like The Obg-like 99.7 8.5E-17 1.8E-21 107.6 9.5 143 1-156 12-175 (176)
75 PRK05124 cysN sulfate adenylyl 99.7 3.6E-16 7.7E-21 119.1 13.9 123 14-149 87-216 (474)
76 TIGR00491 aIF-2 translation in 99.7 4.6E-16 1E-20 120.7 14.5 112 33-157 71-215 (590)
77 cd00880 Era_like Era (E. coli 99.7 1.4E-15 3E-20 99.5 14.4 147 1-156 12-162 (163)
78 cd04160 Arfrp1 Arfrp1 subfamil 99.7 8.8E-17 1.9E-21 106.8 8.8 113 30-155 49-166 (167)
79 KOG0462 Elongation factor-type 99.7 1.2E-16 2.7E-21 119.6 10.1 128 14-158 102-235 (650)
80 TIGR00483 EF-1_alpha translati 99.7 7.5E-16 1.6E-20 116.4 14.0 122 14-148 65-197 (426)
81 PLN03126 Elongation factor Tu; 99.7 1.2E-15 2.5E-20 116.1 14.7 118 14-144 124-248 (478)
82 PRK05506 bifunctional sulfate 99.7 6.8E-16 1.5E-20 121.6 13.9 119 17-148 87-211 (632)
83 TIGR00450 mnmE_trmE_thdF tRNA 99.7 8.6E-16 1.9E-20 116.0 13.5 138 1-157 219-359 (442)
84 KOG1145 Mitochondrial translat 99.7 9.2E-16 2E-20 115.0 12.9 128 15-157 181-315 (683)
85 PLN00043 elongation factor 1-a 99.7 1.1E-15 2.4E-20 115.6 13.7 121 14-147 65-202 (447)
86 PRK14845 translation initiatio 99.7 1.8E-15 3.8E-20 122.9 15.4 143 1-158 477-673 (1049)
87 PRK11058 GTPase HflX; Provisio 99.7 1.3E-15 2.9E-20 114.4 13.4 141 1-157 213-361 (426)
88 cd01891 TypA_BipA TypA (tyrosi 99.7 1.5E-15 3.3E-20 103.4 12.4 116 18-147 49-171 (194)
89 PRK04004 translation initiatio 99.7 2.7E-15 5.8E-20 116.7 14.7 112 33-157 73-217 (586)
90 PRK05433 GTP-binding protein L 99.7 1.6E-15 3.5E-20 118.3 13.0 111 31-158 74-184 (600)
91 cd04156 ARLTS1 ARLTS1 subfamil 99.7 6E-16 1.3E-20 102.1 9.1 139 1-155 15-159 (160)
92 cd01878 HflX HflX subfamily. 99.7 3.6E-15 7.8E-20 102.3 12.8 139 1-156 57-203 (204)
93 cd04154 Arl2 Arl2 subfamily. 99.7 1.3E-15 2.9E-20 101.8 9.7 135 1-155 30-172 (173)
94 TIGR01394 TypA_BipA GTP-bindin 99.7 3.5E-15 7.6E-20 116.2 13.3 129 16-158 46-191 (594)
95 TIGR01393 lepA GTP-binding pro 99.7 3.3E-15 7.2E-20 116.5 13.1 126 16-158 47-180 (595)
96 PRK15467 ethanolamine utilizat 99.6 5.8E-15 1.3E-19 97.4 11.8 107 35-158 41-147 (158)
97 cd04157 Arl6 Arl6 subfamily. 99.6 3E-15 6.5E-20 98.8 10.4 136 1-155 15-161 (162)
98 smart00178 SAR Sar1p-like memb 99.6 3.9E-15 8.5E-20 100.6 9.8 136 1-156 33-183 (184)
99 KOG1191 Mitochondrial GTPase [ 99.6 1.3E-15 2.8E-20 113.0 7.7 150 1-158 284-450 (531)
100 cd01864 Rab19 Rab19 subfamily. 99.6 2E-14 4.3E-19 95.4 12.4 108 32-156 53-164 (165)
101 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 5.5E-15 1.2E-19 99.0 9.7 135 1-155 31-173 (174)
102 PRK09866 hypothetical protein; 99.6 2.2E-14 4.8E-19 110.4 13.9 118 30-155 229-350 (741)
103 cd01866 Rab2 Rab2 subfamily. 99.6 2.6E-14 5.6E-19 95.2 12.6 139 1-157 20-165 (168)
104 cd00878 Arf_Arl Arf (ADP-ribos 99.6 8E-15 1.7E-19 96.5 9.9 137 1-155 15-157 (158)
105 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.2E-14 2.7E-19 96.1 10.8 108 32-157 51-163 (164)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.2E-14 2.5E-19 96.1 10.3 111 30-155 43-158 (159)
107 cd04151 Arl1 Arl1 subfamily. 99.6 1.4E-14 3E-19 95.5 10.4 109 30-155 42-157 (158)
108 cd01861 Rab6 Rab6 subfamily. 99.6 1.9E-14 4.2E-19 94.9 11.1 136 1-156 16-160 (161)
109 cd04149 Arf6 Arf6 subfamily. 99.6 1.1E-14 2.4E-19 97.0 10.0 109 30-155 52-167 (168)
110 cd04124 RabL2 RabL2 subfamily. 99.6 7.6E-14 1.7E-18 92.3 13.8 106 32-158 50-158 (161)
111 cd04158 ARD1 ARD1 subfamily. 99.6 8.4E-15 1.8E-19 97.7 9.2 112 30-158 42-161 (169)
112 cd04168 TetM_like Tet(M)-like 99.6 2.7E-14 5.9E-19 100.0 11.8 115 30-158 63-235 (237)
113 KOG0461 Selenocysteine-specifi 99.6 5.3E-14 1.2E-18 100.8 13.2 131 14-157 41-192 (522)
114 PRK10218 GTP-binding protein; 99.6 4E-14 8.7E-19 110.3 13.7 129 16-158 50-195 (607)
115 PLN00223 ADP-ribosylation fact 99.6 2.1E-14 4.5E-19 96.8 10.6 111 30-157 60-177 (181)
116 COG0481 LepA Membrane GTPase L 99.6 4.3E-15 9.4E-20 109.9 7.7 128 14-158 51-186 (603)
117 cd04104 p47_IIGP_like p47 (47- 99.6 6.8E-14 1.5E-18 95.6 13.0 149 1-159 17-185 (197)
118 cd01860 Rab5_related Rab5-rela 99.6 4.1E-14 8.9E-19 93.5 11.5 139 1-157 17-162 (163)
119 cd01893 Miro1 Miro1 subfamily. 99.6 3.5E-14 7.5E-19 94.4 11.0 114 30-157 46-163 (166)
120 cd04127 Rab27A Rab27a subfamil 99.6 5.9E-14 1.3E-18 94.3 12.0 108 32-157 64-176 (180)
121 cd04106 Rab23_lke Rab23-like s 99.6 5.6E-14 1.2E-18 92.8 11.6 107 32-156 52-161 (162)
122 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 7.8E-14 1.7E-18 92.6 12.3 108 32-157 52-163 (166)
123 cd04138 H_N_K_Ras_like H-Ras/N 99.6 7.3E-14 1.6E-18 92.0 12.1 107 32-157 50-161 (162)
124 cd01868 Rab11_like Rab11-like. 99.6 1E-13 2.2E-18 91.9 12.6 139 1-157 19-164 (165)
125 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.5E-14 7.6E-19 95.9 10.5 110 31-157 52-169 (183)
126 cd04120 Rab12 Rab12 subfamily. 99.6 1.1E-13 2.5E-18 94.7 13.1 109 32-157 50-162 (202)
127 cd01886 EF-G Elongation factor 99.6 3.2E-14 7E-19 101.3 10.7 111 16-142 46-159 (270)
128 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1E-13 2.2E-18 92.6 12.6 111 32-158 50-165 (170)
129 cd04119 RJL RJL (RabJ-Like) su 99.6 1.1E-13 2.3E-18 91.7 12.5 108 32-157 50-166 (168)
130 smart00177 ARF ARF-like small 99.6 6E-14 1.3E-18 94.1 11.4 111 30-157 56-173 (175)
131 cd00154 Rab Rab family. Rab G 99.6 6.3E-14 1.4E-18 91.7 11.2 136 1-154 16-158 (159)
132 smart00175 RAB Rab subfamily o 99.6 9.8E-14 2.1E-18 91.7 12.0 108 32-157 50-161 (164)
133 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.2E-13 2.6E-18 94.6 12.8 109 32-157 51-167 (201)
134 cd04113 Rab4 Rab4 subfamily. 99.6 5.7E-14 1.2E-18 92.7 10.7 107 32-156 50-160 (161)
135 cd01863 Rab18 Rab18 subfamily. 99.6 1.1E-13 2.5E-18 91.2 12.2 137 1-156 16-160 (161)
136 cd04122 Rab14 Rab14 subfamily. 99.6 1.5E-13 3.2E-18 91.3 12.6 108 32-157 52-163 (166)
137 cd01862 Rab7 Rab7 subfamily. 99.6 1.7E-13 3.8E-18 91.2 12.7 110 32-158 50-167 (172)
138 COG2262 HflX GTPases [General 99.6 1E-13 2.2E-18 101.3 12.4 141 1-158 208-356 (411)
139 cd04161 Arl2l1_Arl13_like Arl2 99.6 3.1E-14 6.8E-19 94.8 9.1 138 1-155 15-166 (167)
140 PLN03118 Rab family protein; P 99.6 1.7E-13 3.7E-18 94.5 13.0 138 1-157 30-176 (211)
141 cd01865 Rab3 Rab3 subfamily. 99.6 1.8E-13 3.9E-18 90.8 12.7 108 32-157 51-162 (165)
142 cd04112 Rab26 Rab26 subfamily. 99.6 2.1E-13 4.5E-18 92.7 13.0 109 32-158 51-163 (191)
143 TIGR02528 EutP ethanolamine ut 99.6 5.5E-14 1.2E-18 91.0 9.6 104 34-154 38-141 (142)
144 cd01896 DRG The developmentall 99.6 7.3E-14 1.6E-18 97.7 10.7 142 1-162 16-230 (233)
145 COG0050 TufB GTPases - transla 99.6 1.6E-13 3.4E-18 96.4 12.2 131 13-156 54-199 (394)
146 KOG1489 Predicted GTP-binding 99.6 7.2E-14 1.6E-18 98.9 10.6 141 1-156 212-365 (366)
147 TIGR00231 small_GTP small GTP- 99.5 9.7E-14 2.1E-18 90.6 10.7 139 1-154 17-160 (161)
148 cd01867 Rab8_Rab10_Rab13_like 99.5 1.5E-13 3.2E-18 91.4 11.6 108 32-157 53-164 (167)
149 cd04155 Arl3 Arl3 subfamily. 99.5 3.9E-14 8.4E-19 94.6 8.8 136 1-155 30-172 (173)
150 cd04121 Rab40 Rab40 subfamily. 99.5 2.5E-13 5.5E-18 92.1 12.9 108 32-157 56-166 (189)
151 cd00879 Sar1 Sar1 subfamily. 99.5 3.7E-14 8E-19 96.2 8.8 136 1-156 35-189 (190)
152 PF10662 PduV-EutP: Ethanolami 99.5 1.5E-13 3.2E-18 88.0 10.9 116 17-155 27-143 (143)
153 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 5.3E-13 1.1E-17 91.1 14.1 152 1-159 16-185 (196)
154 smart00176 RAN Ran (Ras-relate 99.5 3E-13 6.5E-18 92.5 12.8 106 32-157 45-153 (200)
155 PTZ00133 ADP-ribosylation fact 99.5 1.1E-13 2.3E-18 93.4 10.4 111 30-157 60-177 (182)
156 PLN03110 Rab GTPase; Provision 99.5 2.8E-13 6.1E-18 93.8 12.5 109 32-158 62-174 (216)
157 cd04110 Rab35 Rab35 subfamily. 99.5 3.7E-13 7.9E-18 92.1 12.9 108 32-157 56-166 (199)
158 KOG0458 Elongation factor 1 al 99.5 1.3E-13 2.9E-18 104.2 11.5 123 13-148 234-372 (603)
159 smart00173 RAS Ras subfamily o 99.5 7.9E-14 1.7E-18 92.3 9.3 109 32-158 49-162 (164)
160 COG1084 Predicted GTPase [Gene 99.5 3.7E-13 8E-18 95.8 12.5 144 1-156 184-334 (346)
161 PF01926 MMR_HSR1: 50S ribosom 99.5 6.1E-14 1.3E-18 87.9 7.7 99 1-105 15-116 (116)
162 cd04136 Rap_like Rap-like subf 99.5 2E-13 4.4E-18 90.1 10.4 108 32-157 50-162 (163)
163 cd04142 RRP22 RRP22 subfamily. 99.5 7.1E-13 1.5E-17 90.6 13.3 117 32-157 50-173 (198)
164 PRK12739 elongation factor G; 99.5 2.1E-13 4.5E-18 108.6 12.0 83 16-111 55-140 (691)
165 cd01885 EF2 EF2 (for archaea a 99.5 3.7E-13 7.9E-18 93.2 11.8 66 31-109 73-138 (222)
166 cd04109 Rab28 Rab28 subfamily. 99.5 4.7E-13 1E-17 92.6 12.4 108 32-157 51-165 (215)
167 PTZ00099 rab6; Provisional 99.5 1.7E-13 3.7E-18 91.9 9.9 108 32-158 30-142 (176)
168 cd04159 Arl10_like Arl10-like 99.5 4.2E-13 9.1E-18 87.9 11.5 138 1-155 15-158 (159)
169 cd04140 ARHI_like ARHI subfami 99.5 2.7E-13 5.9E-18 90.0 10.6 107 32-156 50-163 (165)
170 cd04175 Rap1 Rap1 subgroup. T 99.5 2E-13 4.3E-18 90.4 9.8 108 32-157 50-162 (164)
171 cd04144 Ras2 Ras2 subfamily. 99.5 4.7E-13 1E-17 90.9 11.8 108 32-157 48-162 (190)
172 cd04139 RalA_RalB RalA/RalB su 99.5 3.3E-13 7.1E-18 89.1 10.7 108 32-158 49-162 (164)
173 cd00877 Ran Ran (Ras-related n 99.5 4.7E-13 1E-17 89.0 11.4 106 32-157 50-158 (166)
174 COG3596 Predicted GTPase [Gene 99.5 3.7E-13 7.9E-18 93.8 10.9 150 1-158 55-222 (296)
175 PTZ00369 Ras-like protein; Pro 99.5 2.1E-13 4.6E-18 92.5 9.6 108 32-157 54-166 (189)
176 cd04116 Rab9 Rab9 subfamily. 99.5 1.1E-12 2.4E-17 87.3 12.7 107 32-156 55-169 (170)
177 cd04118 Rab24 Rab24 subfamily. 99.5 6.9E-13 1.5E-17 90.2 11.8 110 32-157 51-165 (193)
178 cd04128 Spg1 Spg1p. Spg1p (se 99.5 2.2E-12 4.9E-17 87.0 14.1 110 32-158 50-166 (182)
179 cd04123 Rab21 Rab21 subfamily. 99.5 7.1E-13 1.5E-17 87.3 11.3 108 32-157 50-161 (162)
180 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 6.8E-13 1.5E-17 88.7 11.3 108 32-157 51-163 (172)
181 cd04147 Ras_dva Ras-dva subfam 99.5 4.9E-13 1.1E-17 91.4 10.7 110 32-158 48-163 (198)
182 cd04125 RabA_like RabA-like su 99.5 1.3E-12 2.9E-17 88.5 12.8 138 1-157 16-161 (188)
183 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 2.5E-13 5.5E-18 90.1 8.5 110 30-155 43-163 (164)
184 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.2E-12 2.6E-17 86.6 11.8 108 32-157 53-163 (164)
185 PLN03071 GTP-binding nuclear p 99.5 7E-13 1.5E-17 92.0 11.0 106 32-157 63-171 (219)
186 cd04114 Rab30 Rab30 subfamily. 99.5 1.1E-12 2.5E-17 87.1 11.2 107 32-156 57-167 (169)
187 PRK00007 elongation factor G; 99.5 3.8E-13 8.1E-18 107.1 10.3 112 16-143 57-171 (693)
188 cd00157 Rho Rho (Ras homology) 99.5 5.9E-13 1.3E-17 88.5 9.4 109 32-155 49-170 (171)
189 PLN03108 Rab family protein; P 99.5 2.7E-12 5.8E-17 88.5 12.8 108 32-157 56-167 (210)
190 KOG0466 Translation initiation 99.5 4.6E-13 9.9E-18 94.6 8.9 116 30-158 124-241 (466)
191 cd04126 Rab20 Rab20 subfamily. 99.5 1.5E-12 3.3E-17 90.2 11.4 114 31-157 44-189 (220)
192 cd04132 Rho4_like Rho4-like su 99.5 6.7E-13 1.5E-17 89.8 9.3 112 32-158 50-167 (187)
193 cd01874 Cdc42 Cdc42 subfamily. 99.5 2.4E-12 5.3E-17 86.3 11.8 110 32-156 50-173 (175)
194 cd04134 Rho3 Rho3 subfamily. 99.5 2.2E-12 4.8E-17 87.5 11.5 112 32-158 49-174 (189)
195 cd04117 Rab15 Rab15 subfamily. 99.5 3.6E-12 7.8E-17 84.3 12.3 107 32-156 50-160 (161)
196 PRK13768 GTPase; Provisional 99.4 3.1E-12 6.8E-17 90.5 12.3 123 31-159 97-248 (253)
197 cd04111 Rab39 Rab39 subfamily. 99.4 1.4E-12 3.1E-17 90.0 10.4 108 32-157 53-165 (211)
198 KOG0460 Mitochondrial translat 99.4 5.6E-12 1.2E-16 90.3 13.3 118 12-142 95-219 (449)
199 smart00174 RHO Rho (Ras homolo 99.4 2E-12 4.3E-17 86.4 10.5 111 32-157 47-171 (174)
200 cd01856 YlqF YlqF. Proteins o 99.4 1.3E-12 2.8E-17 87.3 9.3 94 55-157 7-100 (171)
201 cd04115 Rab33B_Rab33A Rab33B/R 99.4 5.3E-12 1.1E-16 84.2 12.3 108 32-157 52-168 (170)
202 COG0536 Obg Predicted GTPase [ 99.4 5.6E-12 1.2E-16 90.3 12.9 145 1-159 175-334 (369)
203 PRK00741 prfC peptide chain re 99.4 2.8E-12 6.1E-17 98.9 12.3 68 30-110 78-145 (526)
204 KOG1144 Translation initiation 99.4 1.5E-12 3.2E-17 101.1 10.5 114 32-158 541-687 (1064)
205 cd04130 Wrch_1 Wrch-1 subfamil 99.4 1.2E-12 2.7E-17 87.5 8.8 109 32-155 49-171 (173)
206 cd01882 BMS1 Bms1. Bms1 is an 99.4 3.8E-12 8.2E-17 88.6 11.6 125 1-143 55-181 (225)
207 cd04148 RGK RGK subfamily. Th 99.4 3.9E-12 8.3E-17 88.4 11.6 109 31-158 50-163 (221)
208 COG2229 Predicted GTPase [Gene 99.4 8E-12 1.7E-16 82.1 12.1 108 31-156 68-176 (187)
209 cd04177 RSR1 RSR1 subgroup. R 99.4 1.8E-12 3.9E-17 86.3 9.4 109 32-157 50-163 (168)
210 KOG0078 GTP-binding protein SE 99.4 3.6E-12 7.9E-17 85.4 10.7 108 32-157 62-173 (207)
211 cd04143 Rhes_like Rhes_like su 99.4 4.5E-12 9.7E-17 89.4 11.6 109 32-157 49-170 (247)
212 cd01850 CDC_Septin CDC/Septin. 99.4 1.4E-11 3E-16 88.2 14.2 105 32-140 64-184 (276)
213 PRK12740 elongation factor G; 99.4 2.7E-12 5.9E-17 102.1 11.6 81 17-110 43-126 (668)
214 cd04167 Snu114p Snu114p subfam 99.4 4.3E-12 9.3E-17 87.7 11.0 113 31-156 71-209 (213)
215 cd01859 MJ1464 MJ1464. This f 99.4 5.4E-12 1.2E-16 83.1 11.0 95 54-158 2-96 (156)
216 cd04137 RheB Rheb (Ras Homolog 99.4 2E-12 4.4E-17 86.8 9.1 109 32-158 50-163 (180)
217 cd04135 Tc10 TC10 subfamily. 99.4 7E-12 1.5E-16 83.7 11.6 111 32-157 49-173 (174)
218 cd00876 Ras Ras family. The R 99.4 4.1E-12 8.8E-17 83.5 10.3 135 1-156 15-159 (160)
219 TIGR03596 GTPase_YlqF ribosome 99.4 4.3E-12 9.2E-17 90.9 11.0 102 36-158 2-103 (276)
220 cd04176 Rap2 Rap2 subgroup. T 99.4 2.3E-12 4.9E-17 85.2 9.0 108 32-157 50-162 (163)
221 cd04170 EF-G_bact Elongation f 99.4 8.2E-12 1.8E-16 89.2 12.3 69 30-111 63-131 (268)
222 cd00882 Ras_like_GTPase Ras-li 99.4 6.8E-12 1.5E-16 81.0 10.9 108 30-154 44-156 (157)
223 cd01870 RhoA_like RhoA-like su 99.4 9.8E-12 2.1E-16 83.1 11.9 111 32-157 50-174 (175)
224 TIGR00503 prfC peptide chain r 99.4 9.2E-12 2E-16 96.1 12.5 67 30-109 79-145 (527)
225 cd01875 RhoG RhoG subfamily. 99.4 4.1E-12 8.9E-17 86.4 9.4 111 32-157 52-176 (191)
226 PRK13351 elongation factor G; 99.4 5.2E-12 1.1E-16 100.8 11.2 68 30-110 72-139 (687)
227 cd04133 Rop_like Rop subfamily 99.4 7.9E-12 1.7E-16 83.9 10.3 111 32-157 50-172 (176)
228 KOG0092 GTPase Rab5/YPT51 and 99.4 1.7E-12 3.7E-17 85.7 6.8 109 32-158 55-167 (200)
229 PF00025 Arf: ADP-ribosylation 99.4 2.4E-12 5.2E-17 86.3 7.7 111 30-157 57-175 (175)
230 TIGR00484 EF-G translation elo 99.4 4.4E-12 9.5E-17 101.1 10.3 111 17-143 58-171 (689)
231 KOG0084 GTPase Rab1/YPT1, smal 99.4 8.9E-12 1.9E-16 82.7 9.9 110 32-159 59-173 (205)
232 cd01871 Rac1_like Rac1-like su 99.4 5.5E-12 1.2E-16 84.5 9.1 110 32-156 50-173 (174)
233 cd01892 Miro2 Miro2 subfamily. 99.4 1.3E-11 2.8E-16 82.3 10.8 108 32-157 55-165 (169)
234 COG5258 GTPBP1 GTPase [General 99.4 1.8E-11 3.8E-16 89.1 12.0 110 33-155 203-336 (527)
235 COG1163 DRG Predicted GTPase [ 99.4 3.1E-12 6.8E-17 91.0 8.0 142 1-162 79-293 (365)
236 COG1217 TypA Predicted membran 99.4 9.3E-12 2E-16 92.4 10.4 115 30-158 67-195 (603)
237 PRK09563 rbgA GTPase YlqF; Rev 99.4 9.8E-12 2.1E-16 89.5 10.2 103 35-158 4-106 (287)
238 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 2.7E-11 5.7E-16 84.6 11.9 111 32-157 62-187 (232)
239 cd04105 SR_beta Signal recogni 99.3 3.3E-11 7.2E-16 82.7 12.0 113 30-155 47-202 (203)
240 KOG1532 GTPase XAB1, interacts 99.3 2.3E-11 5E-16 84.9 10.8 120 32-158 117-264 (366)
241 cd01873 RhoBTB RhoBTB subfamil 99.3 1.1E-11 2.4E-16 84.5 9.1 107 32-156 67-194 (195)
242 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 2.5E-11 5.5E-16 80.5 10.4 108 32-158 72-185 (221)
243 cd04169 RF3 RF3 subfamily. Pe 99.3 2.9E-11 6.3E-16 86.2 11.2 83 30-126 70-152 (267)
244 cd01858 NGP_1 NGP-1. Autoanti 99.3 9.9E-12 2.1E-16 81.9 8.1 88 64-157 5-94 (157)
245 KOG0073 GTP-binding ADP-ribosy 99.3 1.4E-10 3E-15 74.9 12.8 110 30-157 59-177 (185)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 2.5E-11 5.5E-16 81.9 10.1 110 32-156 54-178 (182)
247 cd04146 RERG_RasL11_like RERG/ 99.3 8.7E-12 1.9E-16 82.6 7.6 109 32-157 48-163 (165)
248 KOG0098 GTPase Rab2, small G p 99.3 2.4E-11 5.2E-16 80.0 9.3 106 32-155 56-165 (216)
249 KOG0070 GTP-binding ADP-ribosy 99.3 2.5E-11 5.3E-16 79.9 9.0 115 30-159 60-179 (181)
250 PF05049 IIGP: Interferon-indu 99.3 4.3E-11 9.2E-16 88.0 10.4 151 1-161 51-221 (376)
251 KOG1143 Predicted translation 99.3 6.2E-11 1.3E-15 86.1 10.5 109 33-154 251-384 (591)
252 cd01849 YlqF_related_GTPase Yl 99.3 4.3E-11 9.4E-16 78.7 8.9 82 69-156 1-83 (155)
253 cd04131 Rnd Rnd subfamily. Th 99.3 5.2E-11 1.1E-15 80.1 8.6 110 32-156 50-174 (178)
254 cd01899 Ygr210 Ygr210 subfamil 99.2 1.7E-10 3.7E-15 83.9 11.4 55 96-158 214-269 (318)
255 cd01855 YqeH YqeH. YqeH is an 99.2 1.3E-10 2.8E-15 78.9 10.1 90 66-157 33-124 (190)
256 PTZ00416 elongation factor 2; 99.2 1.7E-10 3.6E-15 93.7 12.4 83 31-126 92-184 (836)
257 KOG1490 GTP-binding protein CR 99.2 7.9E-11 1.7E-15 88.2 9.1 146 2-155 185-338 (620)
258 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 9E-10 1.9E-14 76.5 13.5 110 32-156 50-174 (222)
259 COG4108 PrfC Peptide chain rel 99.2 1.8E-10 3.9E-15 85.1 10.3 97 15-125 62-161 (528)
260 cd04103 Centaurin_gamma Centau 99.2 1.2E-10 2.5E-15 76.9 8.5 103 32-156 48-157 (158)
261 PRK09435 membrane ATPase/prote 99.2 6E-10 1.3E-14 81.3 12.8 110 30-159 148-261 (332)
262 KOG0076 GTP-binding ADP-ribosy 99.2 3.7E-10 7.9E-15 73.6 10.0 117 30-160 68-189 (197)
263 KOG0072 GTP-binding ADP-ribosy 99.2 2.1E-10 4.5E-15 72.6 8.5 114 32-160 63-181 (182)
264 KOG0394 Ras-related GTPase [Ge 99.2 2.9E-10 6.3E-15 74.8 8.9 109 33-156 60-176 (210)
265 cd04129 Rho2 Rho2 subfamily. 99.2 1.5E-10 3.2E-15 78.4 7.6 111 32-157 50-172 (187)
266 cd01857 HSR1_MMR1 HSR1/MMR1. 99.2 2.2E-10 4.7E-15 74.2 7.9 78 61-145 5-84 (141)
267 KOG0090 Signal recognition par 99.2 3.7E-09 7.9E-14 71.4 13.6 116 30-156 81-237 (238)
268 KOG0075 GTP-binding ADP-ribosy 99.2 1.3E-09 2.8E-14 69.3 10.7 123 21-158 52-182 (186)
269 PRK07560 elongation factor EF- 99.2 4.3E-10 9.4E-15 90.3 10.8 67 30-109 86-152 (731)
270 cd01853 Toc34_like Toc34-like 99.1 2.7E-09 5.9E-14 75.3 13.4 108 1-110 47-163 (249)
271 COG0480 FusA Translation elong 99.1 1.9E-10 4.1E-15 90.9 8.1 98 15-126 56-157 (697)
272 PF00071 Ras: Ras family; Int 99.1 4.6E-10 1E-14 74.0 8.7 109 32-158 49-161 (162)
273 KOG0071 GTP-binding ADP-ribosy 99.1 6.3E-10 1.4E-14 70.2 8.5 114 30-158 60-178 (180)
274 KOG0463 GTP-binding protein GP 99.1 1.4E-09 3.1E-14 79.3 11.5 111 32-155 220-355 (641)
275 PLN00116 translation elongatio 99.1 1.3E-09 2.9E-14 88.7 11.7 66 31-109 98-163 (843)
276 KOG0083 GTPase Rab26/Rab37, sm 99.1 1.2E-09 2.7E-14 68.3 8.7 111 32-160 48-162 (192)
277 KOG0091 GTPase Rab39, small G 99.1 2.5E-09 5.5E-14 69.2 10.3 108 32-157 59-172 (213)
278 PF03029 ATP_bind_1: Conserved 99.1 1.3E-09 2.8E-14 76.4 9.6 118 32-159 92-238 (238)
279 KOG0093 GTPase Rab3, small G p 99.1 1.1E-09 2.4E-14 69.6 8.2 108 32-157 71-182 (193)
280 KOG0087 GTPase Rab11/YPT3, sma 99.1 6.2E-10 1.4E-14 74.8 7.3 107 32-156 64-174 (222)
281 KOG0088 GTPase Rab21, small G 99.1 6.7E-10 1.4E-14 71.5 6.5 106 32-156 63-173 (218)
282 PF04548 AIG1: AIG1 family; I 99.0 4.4E-09 9.5E-14 72.7 10.9 150 1-158 16-186 (212)
283 smart00053 DYNc Dynamin, GTPas 99.0 8E-09 1.7E-13 72.3 11.7 80 31-112 125-208 (240)
284 PF00735 Septin: Septin; Inte 99.0 5.2E-09 1.1E-13 75.0 10.9 98 32-130 64-176 (281)
285 TIGR03597 GTPase_YqeH ribosome 99.0 5.3E-09 1.2E-13 77.6 11.2 100 52-156 51-151 (360)
286 PF09439 SRPRB: Signal recogni 99.0 6.8E-10 1.5E-14 74.2 5.6 86 30-126 48-142 (181)
287 PRK09602 translation-associate 99.0 6.5E-09 1.4E-13 77.9 10.8 70 1-78 17-113 (396)
288 KOG0081 GTPase Rab27, small G 99.0 1.5E-08 3.3E-13 65.4 10.7 106 32-156 68-179 (219)
289 PTZ00132 GTP-binding nuclear p 99.0 2E-08 4.4E-13 69.4 12.1 106 32-157 59-167 (215)
290 PRK12289 GTPase RsgA; Reviewed 99.0 7.3E-09 1.6E-13 76.4 10.2 84 65-155 87-172 (352)
291 TIGR00157 ribosome small subun 99.0 1E-08 2.2E-13 72.3 10.1 85 65-155 34-120 (245)
292 KOG2655 Septin family protein 99.0 1.3E-08 2.7E-13 74.4 10.8 104 32-139 80-198 (366)
293 COG4917 EutP Ethanolamine util 98.9 4.6E-09 1E-13 65.1 6.9 105 34-156 40-144 (148)
294 KOG0095 GTPase Rab30, small G 98.9 4.5E-08 9.8E-13 62.5 11.1 106 32-155 57-166 (213)
295 PTZ00258 GTP-binding protein; 98.9 2.5E-08 5.5E-13 74.3 11.5 70 1-78 37-126 (390)
296 KOG0086 GTPase Rab4, small G p 98.9 8.1E-09 1.8E-13 66.2 7.6 105 32-155 59-168 (214)
297 COG5019 CDC3 Septin family pro 98.9 7E-08 1.5E-12 70.3 13.2 125 32-160 83-225 (373)
298 KOG0097 GTPase Rab14, small G 98.9 1.4E-08 2.9E-13 64.3 8.4 104 30-151 59-166 (215)
299 PRK00098 GTPase RsgA; Reviewed 98.9 1.1E-08 2.4E-13 74.2 9.1 84 66-155 79-164 (298)
300 KOG1547 Septin CDC10 and relat 98.9 6.9E-08 1.5E-12 66.6 11.7 128 31-162 104-248 (336)
301 TIGR02836 spore_IV_A stage IV 98.9 3E-08 6.5E-13 73.7 10.5 132 1-142 33-219 (492)
302 KOG0079 GTP-binding protein H- 98.9 2.3E-08 5E-13 63.8 8.6 108 32-157 58-168 (198)
303 cd01854 YjeQ_engC YjeQ/EngC. 98.9 2.2E-08 4.8E-13 72.2 9.7 84 65-155 76-161 (287)
304 TIGR00750 lao LAO/AO transport 98.9 1.2E-07 2.6E-12 68.9 13.4 109 30-158 126-238 (300)
305 TIGR00490 aEF-2 translation el 98.9 5.5E-09 1.2E-13 83.9 6.8 67 30-109 85-151 (720)
306 KOG0459 Polypeptide release fa 98.9 1.7E-08 3.7E-13 74.1 8.6 124 15-151 138-279 (501)
307 KOG0074 GTP-binding ADP-ribosy 98.9 1.8E-09 4E-14 68.2 3.2 112 31-157 62-178 (185)
308 cd04102 RabL3 RabL3 (Rab-like3 98.9 1E-07 2.2E-12 65.3 11.9 96 32-143 55-175 (202)
309 KOG0080 GTPase Rab18, small G 98.9 5.4E-09 1.2E-13 67.5 5.2 108 31-157 60-173 (209)
310 PRK13796 GTPase YqeH; Provisio 98.9 6.4E-08 1.4E-12 72.1 11.5 93 62-156 63-157 (365)
311 PRK12288 GTPase RsgA; Reviewed 98.8 6.8E-08 1.5E-12 71.3 11.0 87 66-156 119-206 (347)
312 COG1100 GTPase SAR1 and relate 98.8 2E-07 4.3E-12 64.5 12.7 113 32-157 55-184 (219)
313 PRK01889 GTPase RsgA; Reviewed 98.8 6.3E-08 1.4E-12 71.9 10.3 82 66-154 111-193 (356)
314 TIGR00991 3a0901s02IAP34 GTP-b 98.8 2.8E-07 6E-12 66.6 12.0 105 1-110 54-167 (313)
315 KOG0465 Mitochondrial elongati 98.7 1.9E-08 4.2E-13 77.2 5.7 72 30-114 103-174 (721)
316 KOG0395 Ras-related GTPase [Ge 98.7 4.6E-08 1E-12 66.7 6.8 110 32-159 52-166 (196)
317 KOG0468 U5 snRNP-specific prot 98.7 2.1E-08 4.5E-13 77.9 5.6 65 32-109 198-262 (971)
318 cd04178 Nucleostemin_like Nucl 98.7 3.3E-08 7.2E-13 66.0 6.0 55 69-123 1-57 (172)
319 KOG0467 Translation elongation 98.6 2.4E-07 5.2E-12 72.9 9.3 65 30-107 71-135 (887)
320 PLN00023 GTP-binding protein; 98.6 2.9E-07 6.3E-12 66.9 9.1 66 33-111 85-166 (334)
321 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 1.2E-06 2.7E-11 61.1 10.2 128 19-155 32-173 (232)
322 TIGR00993 3a0901s04IAP86 chlor 98.6 4.1E-06 9E-11 66.0 13.9 108 1-110 134-250 (763)
323 PF03308 ArgK: ArgK protein; 98.6 1.4E-06 2.9E-11 61.2 10.0 105 30-159 121-231 (266)
324 TIGR00073 hypB hydrogenase acc 98.5 9.2E-07 2E-11 60.9 8.9 57 95-156 147-205 (207)
325 COG1703 ArgK Putative periplas 98.5 2.9E-06 6.2E-11 60.6 11.3 108 30-160 143-256 (323)
326 TIGR03597 GTPase_YqeH ribosome 98.5 3.6E-08 7.7E-13 73.3 1.0 121 1-124 170-294 (360)
327 KOG0464 Elongation factor G [T 98.5 5E-08 1.1E-12 72.3 1.5 83 30-126 101-183 (753)
328 COG1161 Predicted GTPases [Gen 98.5 1.5E-06 3.2E-11 63.8 9.0 102 33-154 12-113 (322)
329 KOG3859 Septins (P-loop GTPase 98.4 9.6E-07 2.1E-11 62.4 7.1 156 1-161 58-237 (406)
330 KOG4252 GTP-binding protein [S 98.4 5.6E-07 1.2E-11 59.4 5.5 107 32-157 70-180 (246)
331 KOG2485 Conserved ATP/GTP bind 98.4 1.7E-06 3.7E-11 61.9 7.1 79 32-124 23-101 (335)
332 KOG2484 GTPase [General functi 98.4 2.3E-06 4.9E-11 63.1 7.8 60 65-124 144-205 (435)
333 PF00350 Dynamin_N: Dynamin fa 98.3 1.1E-06 2.4E-11 58.3 5.4 66 32-106 102-168 (168)
334 cd01900 YchF YchF subfamily. 98.3 1.3E-06 2.7E-11 62.5 5.2 70 1-78 14-103 (274)
335 TIGR00101 ureG urease accessor 98.3 4.5E-06 9.8E-11 57.1 7.6 78 69-157 114-195 (199)
336 COG1162 Predicted GTPases [Gen 98.2 2E-05 4.4E-10 56.6 9.9 84 68-156 80-165 (301)
337 PRK09601 GTP-binding protein Y 98.2 3.8E-06 8.2E-11 62.2 5.8 70 1-78 18-107 (364)
338 PF08477 Miro: Miro-like prote 98.2 8.2E-07 1.8E-11 55.5 2.1 62 33-107 52-119 (119)
339 KOG0410 Predicted GTP binding 98.1 1.5E-05 3.3E-10 57.6 7.5 135 1-157 194-340 (410)
340 cd00066 G-alpha G protein alph 98.1 4.3E-05 9.4E-10 56.0 9.5 116 30-158 160-311 (317)
341 COG1161 Predicted GTPases [Gen 98.1 2.9E-06 6.3E-11 62.2 3.1 42 1-43 148-189 (322)
342 smart00275 G_alpha G protein a 98.1 8.8E-05 1.9E-09 55.0 10.7 115 30-157 183-333 (342)
343 KOG1424 Predicted GTP-binding 98.1 2.9E-05 6.4E-10 59.1 8.1 79 57-142 164-244 (562)
344 PRK10463 hydrogenase nickel in 98.0 1.3E-05 2.8E-10 57.6 5.9 55 97-156 231-287 (290)
345 KOG0393 Ras-related small GTPa 98.0 2.2E-05 4.7E-10 53.2 6.1 110 32-156 54-177 (198)
346 COG0012 Predicted GTPase, prob 98.0 0.00011 2.4E-09 54.2 9.3 69 1-78 18-108 (372)
347 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.3E-05 2.8E-10 58.0 3.6 43 1-44 137-179 (287)
348 KOG0077 Vesicle coat complex C 97.8 0.00015 3.3E-09 47.5 7.3 113 30-155 63-190 (193)
349 TIGR03596 GTPase_YlqF ribosome 97.8 2E-05 4.3E-10 56.7 3.2 42 1-43 134-175 (276)
350 KOG1673 Ras GTPases [General f 97.8 0.00066 1.4E-08 44.1 9.5 108 32-155 70-183 (205)
351 PF06858 NOG1: Nucleolar GTP-b 97.8 0.0003 6.5E-09 37.8 6.5 40 68-107 14-58 (58)
352 COG0378 HypB Ni2+-binding GTPa 97.7 0.0001 2.2E-09 49.7 5.3 55 100-157 146-200 (202)
353 KOG2423 Nucleolar GTPase [Gene 97.7 0.00079 1.7E-08 50.3 10.3 95 57-157 203-299 (572)
354 KOG1954 Endocytosis/signaling 97.7 0.00046 9.9E-09 51.1 8.9 79 32-113 148-228 (532)
355 KOG3883 Ras family small GTPas 97.6 0.0011 2.4E-08 43.0 9.0 108 31-156 60-173 (198)
356 KOG0082 G-protein alpha subuni 97.6 0.002 4.4E-08 47.6 11.4 116 30-158 194-344 (354)
357 KOG0469 Elongation factor 2 [T 97.6 0.00017 3.7E-09 55.2 5.9 64 33-109 100-163 (842)
358 KOG1486 GTP-binding protein DR 97.6 0.00047 1E-08 48.5 7.4 51 97-159 239-289 (364)
359 cd03110 Fer4_NifH_child This p 97.6 0.0018 3.9E-08 43.4 10.2 65 30-109 92-156 (179)
360 KOG1534 Putative transcription 97.5 0.00049 1.1E-08 47.1 6.6 123 31-159 98-252 (273)
361 PRK13796 GTPase YqeH; Provisio 97.5 7.5E-05 1.6E-09 55.8 3.0 41 1-41 176-220 (365)
362 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00063 1.4E-08 53.8 7.9 68 32-110 207-275 (749)
363 TIGR00064 ftsY signal recognit 97.5 0.0029 6.3E-08 45.5 10.5 102 30-150 154-260 (272)
364 KOG0096 GTPase Ran/TC4/GSP1 (n 97.4 0.0002 4.3E-09 48.0 3.8 107 31-157 59-168 (216)
365 KOG3886 GTP-binding protein [S 97.3 0.0041 8.9E-08 43.3 9.3 86 17-115 35-135 (295)
366 PRK10416 signal recognition pa 97.3 0.0038 8.1E-08 45.9 9.9 105 30-150 196-302 (318)
367 TIGR01425 SRP54_euk signal rec 97.3 0.0038 8.2E-08 47.6 10.1 73 31-112 183-255 (429)
368 PRK14974 cell division protein 97.3 0.004 8.6E-08 46.1 10.0 102 30-151 222-323 (336)
369 KOG1424 Predicted GTP-binding 97.3 0.0002 4.3E-09 54.8 2.9 43 1-44 330-372 (562)
370 COG3640 CooC CO dehydrogenase 97.3 0.00049 1.1E-08 47.8 4.2 62 31-108 134-197 (255)
371 KOG1487 GTP-binding protein DR 97.2 0.00081 1.8E-08 47.5 4.7 51 97-159 232-282 (358)
372 PF00503 G-alpha: G-protein al 97.2 0.0011 2.5E-08 50.0 5.7 114 30-156 235-388 (389)
373 PRK12288 GTPase RsgA; Reviewed 97.1 0.00091 2E-08 49.7 4.9 43 1-44 221-270 (347)
374 PRK12289 GTPase RsgA; Reviewed 97.0 0.00055 1.2E-08 50.9 2.9 44 1-45 188-238 (352)
375 COG5192 BMS1 GTP-binding prote 96.8 0.014 3.1E-07 45.9 8.8 96 31-142 113-210 (1077)
376 KOG4423 GTP-binding protein-li 96.7 0.0036 7.7E-08 42.1 4.6 109 32-156 76-192 (229)
377 TIGR00157 ribosome small subun 96.7 0.0017 3.6E-08 46.0 3.1 42 1-44 136-184 (245)
378 KOG0447 Dynamin-like GTP bindi 96.7 0.03 6.5E-07 44.0 9.7 94 15-111 390-494 (980)
379 KOG1707 Predicted Ras related/ 96.6 0.0042 9.1E-08 48.5 4.9 84 68-155 80-172 (625)
380 COG1149 MinD superfamily P-loo 96.4 0.025 5.4E-07 40.4 7.5 61 32-109 165-227 (284)
381 KOG3905 Dynein light intermedi 96.3 0.025 5.5E-07 41.5 7.0 60 94-156 220-288 (473)
382 PRK00771 signal recognition pa 96.3 0.058 1.3E-06 41.5 9.3 70 32-111 177-247 (437)
383 PF00448 SRP54: SRP54-type pro 96.3 0.015 3.3E-07 39.8 5.6 72 31-112 84-156 (196)
384 cd03114 ArgK-like The function 96.2 0.023 4.9E-07 37.1 5.9 58 30-107 91-148 (148)
385 PF05783 DLIC: Dynein light in 96.1 0.021 4.5E-07 44.3 6.3 60 95-157 195-263 (472)
386 cd02038 FleN-like FleN is a me 96.1 0.1 2.2E-06 33.6 8.7 76 31-123 45-122 (139)
387 TIGR00092 GTP-binding protein 96.1 0.0041 8.9E-08 46.5 2.5 71 1-79 18-109 (368)
388 cd03112 CobW_like The function 96.1 0.013 2.9E-07 38.6 4.6 69 31-108 87-158 (158)
389 TIGR03348 VI_IcmF type VI secr 96.1 0.038 8.2E-07 47.7 8.1 81 30-110 160-257 (1169)
390 PRK00098 GTPase RsgA; Reviewed 96.1 0.011 2.3E-07 43.2 4.2 42 1-43 180-228 (298)
391 KOG2484 GTPase [General functi 96.0 0.002 4.3E-08 48.1 0.2 42 1-43 268-309 (435)
392 COG1162 Predicted GTPases [Gen 95.9 0.016 3.4E-07 42.1 4.4 44 1-44 180-229 (301)
393 cd03115 SRP The signal recogni 95.7 0.12 2.5E-06 34.4 7.9 73 30-112 82-155 (173)
394 TIGR00959 ffh signal recogniti 95.7 0.16 3.4E-06 39.1 9.3 70 31-110 183-253 (428)
395 COG0523 Putative GTPases (G3E 95.7 0.22 4.7E-06 36.9 9.6 97 32-140 86-184 (323)
396 PRK10867 signal recognition pa 95.6 0.14 3E-06 39.5 8.7 70 31-110 184-254 (433)
397 PRK06731 flhF flagellar biosyn 95.4 0.16 3.4E-06 36.6 8.1 71 31-111 155-226 (270)
398 KOG0446 Vacuolar sorting prote 95.4 0.0049 1.1E-07 49.5 0.4 77 32-111 133-214 (657)
399 PRK12726 flagellar biosynthesi 95.3 0.28 6.1E-06 37.2 9.3 70 31-111 286-357 (407)
400 cd01851 GBP Guanylate-binding 95.3 0.11 2.3E-06 36.4 6.7 46 1-46 23-75 (224)
401 cd02036 MinD Bacterial cell di 95.2 0.2 4.4E-06 33.2 7.8 63 32-109 64-127 (179)
402 KOG0099 G protein subunit Galp 95.2 0.3 6.5E-06 35.1 8.6 69 30-111 201-284 (379)
403 PRK05703 flhF flagellar biosyn 95.1 0.51 1.1E-05 36.3 10.5 93 30-140 299-392 (424)
404 PRK14722 flhF flagellar biosyn 95.1 0.29 6.4E-06 36.9 9.0 73 30-110 215-295 (374)
405 PF03193 DUF258: Protein of un 95.1 0.0078 1.7E-07 39.8 0.6 44 1-44 51-100 (161)
406 cd01854 YjeQ_engC YjeQ/EngC. 95.1 0.067 1.4E-06 38.9 5.4 42 1-43 177-225 (287)
407 PRK12727 flagellar biosynthesi 95.0 0.69 1.5E-05 36.7 11.0 70 31-110 429-498 (559)
408 PRK11889 flhF flagellar biosyn 95.0 0.27 5.8E-06 37.6 8.4 71 31-111 321-392 (436)
409 PF10609 ParA: ParA/MinD ATPas 95.0 0.18 3.8E-06 29.3 5.9 61 33-107 3-65 (81)
410 PRK12723 flagellar biosynthesi 95.0 0.65 1.4E-05 35.3 10.5 73 30-112 254-328 (388)
411 KOG2485 Conserved ATP/GTP bind 94.6 0.056 1.2E-06 39.4 3.9 37 10-46 172-211 (335)
412 KOG1491 Predicted GTP-binding 94.6 0.035 7.6E-07 40.9 2.9 70 1-79 36-126 (391)
413 TIGR01969 minD_arch cell divis 94.5 0.43 9.2E-06 33.6 8.3 63 31-108 109-172 (251)
414 KOG0052 Translation elongation 94.5 0.019 4.2E-07 42.9 1.5 70 32-114 83-160 (391)
415 cd02037 MRP-like MRP (Multiple 94.5 0.17 3.8E-06 33.5 6.0 42 67-108 91-133 (169)
416 cd03111 CpaE_like This protein 94.5 0.15 3.2E-06 31.1 5.1 59 32-105 44-106 (106)
417 KOG2423 Nucleolar GTPase [Gene 94.3 0.0057 1.2E-07 45.9 -1.6 40 1-41 323-362 (572)
418 COG1419 FlhF Flagellar GTP-bin 94.3 1 2.2E-05 34.4 9.9 69 31-110 282-352 (407)
419 COG0541 Ffh Signal recognition 94.1 0.41 9E-06 36.7 7.6 71 32-112 184-255 (451)
420 TIGR01007 eps_fam capsular exo 94.1 0.17 3.7E-06 34.6 5.3 42 68-109 151-193 (204)
421 KOG3887 Predicted small GTPase 94.0 0.54 1.2E-05 33.4 7.5 72 32-113 76-152 (347)
422 PRK14723 flhF flagellar biosyn 93.9 0.54 1.2E-05 38.8 8.5 73 31-112 264-339 (767)
423 KOG0085 G protein subunit Galp 93.8 0.65 1.4E-05 32.8 7.6 61 96-156 266-347 (359)
424 PF14331 ImcF-related_N: ImcF- 93.7 0.3 6.5E-06 35.1 6.2 62 49-110 5-83 (266)
425 KOG0780 Signal recognition par 93.6 0.69 1.5E-05 35.1 7.9 66 32-109 185-253 (483)
426 PRK13505 formate--tetrahydrofo 93.6 0.83 1.8E-05 36.2 8.7 63 88-157 364-428 (557)
427 PHA02518 ParA-like protein; Pr 93.2 1.5 3.3E-05 29.8 8.8 64 30-108 76-145 (211)
428 COG3523 IcmF Type VI protein s 92.9 0.6 1.3E-05 40.4 7.5 80 30-110 173-270 (1188)
429 TIGR01968 minD_bact septum sit 92.8 0.41 8.8E-06 33.9 5.7 63 31-108 112-175 (261)
430 TIGR02475 CobW cobalamin biosy 92.8 0.84 1.8E-05 34.1 7.5 82 32-123 94-200 (341)
431 cd02035 ArsA ArsA ATPase funct 92.8 2.2 4.8E-05 29.6 9.2 69 31-109 114-183 (217)
432 PRK12724 flagellar biosynthesi 92.7 2.9 6.4E-05 32.3 10.3 73 30-112 299-375 (432)
433 PF01656 CbiA: CobQ/CobB/MinD/ 92.1 0.73 1.6E-05 30.9 6.1 71 31-116 95-168 (195)
434 COG0552 FtsY Signal recognitio 92.0 1.1 2.5E-05 33.2 7.1 106 30-151 221-328 (340)
435 CHL00175 minD septum-site dete 91.8 0.63 1.4E-05 33.5 5.7 63 31-108 127-190 (281)
436 KOG1707 Predicted Ras related/ 91.6 1 2.2E-05 35.8 6.8 85 66-158 494-583 (625)
437 PRK13849 putative crown gall t 91.3 2.1 4.7E-05 30.1 7.8 62 31-107 84-151 (231)
438 PF07015 VirC1: VirC1 protein; 91.2 1.3 2.9E-05 31.1 6.5 94 32-148 85-184 (231)
439 PRK14721 flhF flagellar biosyn 90.1 7.4 0.00016 30.1 11.0 70 31-111 270-341 (420)
440 cd00550 ArsA_ATPase Oxyanion-t 90.1 5.3 0.00012 28.5 11.3 78 30-109 124-202 (254)
441 TIGR03371 cellulose_yhjQ cellu 89.6 2.8 6.1E-05 29.4 7.3 62 32-109 116-181 (246)
442 cd02032 Bchl_like This family 89.6 0.93 2E-05 32.4 4.9 65 30-108 115-184 (267)
443 PF06564 YhjQ: YhjQ protein; 89.4 5.6 0.00012 28.3 8.5 57 31-110 118-177 (243)
444 TIGR01005 eps_transp_fam exopo 88.8 1.4 3.1E-05 36.5 6.0 64 31-108 656-720 (754)
445 PF02492 cobW: CobW/HypB/UreG, 88.3 0.78 1.7E-05 30.7 3.6 71 32-112 86-157 (178)
446 PRK10818 cell division inhibit 88.0 2.9 6.2E-05 29.9 6.5 64 30-108 113-185 (270)
447 PF08438 MMR_HSR1_C: GTPase of 87.6 0.63 1.4E-05 28.7 2.5 32 102-141 1-32 (109)
448 PRK06995 flhF flagellar biosyn 87.6 12 0.00027 29.5 10.7 71 31-110 335-405 (484)
449 PRK11519 tyrosine kinase; Prov 86.4 2.1 4.6E-05 35.4 5.7 41 68-108 659-700 (719)
450 COG4963 CpaE Flp pilus assembl 85.7 2.9 6.3E-05 31.5 5.5 66 32-112 219-287 (366)
451 cd02117 NifH_like This family 85.5 2.7 5.9E-05 28.9 5.1 67 30-108 116-187 (212)
452 PF09547 Spore_IV_A: Stage IV 84.9 7.8 0.00017 30.1 7.5 67 69-142 147-219 (492)
453 COG0455 flhG Antiactivator of 84.7 11 0.00024 27.2 8.0 61 32-108 114-178 (262)
454 PRK11670 antiporter inner memb 84.3 2.9 6.2E-05 31.7 5.1 65 31-109 216-282 (369)
455 cd01886 EF-G Elongation factor 84.0 2.2 4.8E-05 30.8 4.2 28 131-158 241-268 (270)
456 KOG1533 Predicted GTPase [Gene 83.9 0.55 1.2E-05 33.2 1.1 78 32-113 98-180 (290)
457 TIGR03029 EpsG chain length de 83.6 3.3 7.2E-05 29.7 5.1 24 98-121 237-260 (274)
458 PRK11537 putative GTP-binding 83.3 7.2 0.00016 28.9 6.8 73 32-111 92-165 (318)
459 COG0489 Mrp ATPases involved i 82.5 9.1 0.0002 27.6 6.9 42 69-110 191-233 (265)
460 PRK13705 plasmid-partitioning 82.3 13 0.00029 28.4 8.0 33 31-78 235-267 (388)
461 KOG2743 Cobalamin synthesis pr 82.3 5.5 0.00012 29.5 5.5 85 33-123 148-238 (391)
462 TIGR03815 CpaE_hom_Actino heli 82.1 3.3 7E-05 30.6 4.6 62 31-107 205-266 (322)
463 cd00477 FTHFS Formyltetrahydro 81.4 14 0.00029 29.4 7.7 65 87-158 347-413 (524)
464 PRK09841 cryptic autophosphory 81.4 3.9 8.6E-05 33.9 5.2 41 68-108 664-705 (726)
465 CHL00072 chlL photochlorophyll 80.8 3.3 7.3E-05 30.2 4.2 63 31-107 116-183 (290)
466 PRK13507 formate--tetrahydrofo 80.5 16 0.00035 29.4 7.9 64 88-158 393-458 (587)
467 PRK13185 chlL protochlorophyll 79.8 3.3 7.2E-05 29.6 3.9 64 30-107 117-185 (270)
468 PHA02519 plasmid partition pro 79.2 17 0.00038 27.8 7.7 82 30-126 234-324 (387)
469 KOG1249 Predicted GTPases [Gen 78.8 3.4 7.4E-05 32.7 3.8 60 99-158 140-211 (572)
470 KOG3022 Predicted ATPase, nucl 78.2 3.8 8.1E-05 29.8 3.6 62 32-106 158-221 (300)
471 cd04169 RF3 RF3 subfamily. Pe 77.8 4.3 9.4E-05 29.2 4.0 28 131-158 238-265 (267)
472 PRK13506 formate--tetrahydrofo 77.6 15 0.00033 29.5 7.0 65 88-158 385-451 (578)
473 KOG0781 Signal recognition par 76.0 9.9 0.00021 30.0 5.5 76 30-112 466-546 (587)
474 PRK09601 GTP-binding protein Y 75.8 8 0.00017 29.3 5.0 44 95-142 198-241 (364)
475 TIGR01281 DPOR_bchL light-inde 75.7 6 0.00013 28.3 4.3 65 30-108 115-184 (268)
476 PRK00090 bioD dithiobiotin syn 75.2 9.5 0.00021 26.3 5.1 39 70-108 135-174 (222)
477 cd02042 ParA ParA and ParB of 73.5 11 0.00024 22.4 4.5 34 31-79 40-73 (104)
478 PLN02759 Formate--tetrahydrofo 72.4 24 0.00051 28.7 6.9 66 87-158 441-508 (637)
479 PRK13869 plasmid-partitioning 71.2 38 0.00082 26.1 7.8 34 30-78 251-284 (405)
480 COG2759 MIS1 Formyltetrahydrof 70.3 32 0.00069 27.1 7.0 64 88-158 361-426 (554)
481 PRK10037 cell division protein 69.6 37 0.00079 24.0 8.2 57 30-107 117-174 (250)
482 COG2403 Predicted GTPase [Gene 67.1 9 0.0002 29.2 3.5 50 69-122 243-294 (449)
483 PF01268 FTHFS: Formate--tetra 66.9 9.5 0.00021 30.5 3.8 63 88-157 363-427 (557)
484 PF05014 Nuc_deoxyrib_tr: Nucl 64.8 29 0.00064 21.1 5.4 53 55-108 49-101 (113)
485 PTZ00386 formyl tetrahydrofola 64.4 46 0.001 27.1 7.0 65 88-158 429-496 (625)
486 TIGR00347 bioD dethiobiotin sy 64.3 24 0.00051 23.1 4.9 18 88-105 121-138 (166)
487 TIGR03453 partition_RepA plasm 62.2 62 0.0013 24.7 7.4 34 30-78 234-267 (387)
488 PRK13695 putative NTPase; Prov 61.6 44 0.00095 22.0 7.0 38 67-106 96-136 (174)
489 cd07021 Clp_protease_NfeD_like 60.8 49 0.0011 22.3 7.0 37 68-104 30-66 (178)
490 cd02040 NifH NifH gene encodes 59.8 49 0.0011 23.5 6.2 12 30-41 116-127 (270)
491 cd07015 Clp_protease_NfeD Nodu 59.8 39 0.00085 22.7 5.3 38 67-104 29-66 (172)
492 smart00010 small_GTPase Small 55.2 23 0.0005 21.3 3.5 14 96-109 77-90 (124)
493 PRK13231 nitrogenase reductase 54.7 52 0.0011 23.4 5.7 12 30-41 113-124 (264)
494 KOG1980 Uncharacterized conser 54.4 49 0.0011 27.2 5.7 66 62-127 136-202 (754)
495 TIGR03018 pepcterm_TyrKin exop 54.1 68 0.0015 21.9 6.3 24 98-121 173-196 (207)
496 PF04317 DUF463: YcjX-like fam 52.6 93 0.002 24.4 6.8 27 98-124 308-334 (443)
497 COG2894 MinD Septum formation 50.7 44 0.00095 23.8 4.4 33 31-79 114-147 (272)
498 cd02034 CooC The accessory pro 50.0 16 0.00034 22.7 2.1 7 33-39 89-95 (116)
499 COG3106 Predicted ATPase [Gene 48.6 1.2E+02 0.0027 23.3 7.7 58 68-125 281-360 (467)
500 PRK13232 nifH nitrogenase redu 48.0 40 0.00086 24.2 4.2 41 67-108 141-186 (273)
No 1
>COG0218 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=179.47 Aligned_cols=158 Identities=39% Similarity=0.567 Sum_probs=143.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|||+|+++.+.+++|.+||.|+.+++|.++.++.+||.||||...++...++.|..++.+|+....+...+++++|++.+
T Consensus 40 lIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~ 119 (200)
T COG0218 40 LINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP 119 (200)
T ss_pred HHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC
Confidence 68999998788999999999999999999988999999999999999999999999999999999889999999999999
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+...|.++++++...++|+++++||+|.+...+....+..+.+.+........-++.+|+.++.|+++++..|.+.+.
T Consensus 120 ~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 120 PKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888887777787766655442223899999999999999999988764
No 2
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=7.1e-23 Score=137.84 Aligned_cols=146 Identities=36% Similarity=0.598 Sum_probs=119.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++......+++.+|+|++..++..+..+.++||||++........++.+...+..+++....++++++|+|++.+
T Consensus 34 lin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~ 113 (179)
T TIGR03598 34 LINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP 113 (179)
T ss_pred HHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC
Confidence 58999988446778899999999888877677999999999876555555667777777888777778999999999988
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
+...+.+++..+...++|+++++||+|+.+..+.....+.+++.+...+. .++++++||++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~-~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 114 LKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD-DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC-CCceEEEECCCCCCCC
Confidence 88888877788887889999999999998766666677778777776532 2489999999999974
No 3
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=4.1e-24 Score=139.11 Aligned_cols=137 Identities=26% Similarity=0.317 Sum_probs=95.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCccc-ccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFA-YAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|||+|+|+ ..+++++||+|++.....+ +..+.++|+||.... ..+.+ +....+++. ....|+++.|+|
T Consensus 16 LfN~Ltg~--~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-----e~v~~~~l~-~~~~D~ii~VvD 87 (156)
T PF02421_consen 16 LFNALTGA--KQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-----ERVARDYLL-SEKPDLIIVVVD 87 (156)
T ss_dssp HHHHHHTT--SEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-----HHHHHHHHH-HTSSSEEEEEEE
T ss_pred HHHHHHCC--CceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-----HHHHHHHHh-hcCCCEEEEECC
Confidence 69999999 4889999999998876433 456999999996333 22221 334455554 234699999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
++.. ..+..++..+.+.++|+++|+||+|...+....-..+.+.+.++ .|++++||.+++|+++|+++|
T Consensus 88 a~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 88 ATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp GGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------S-EEEEBTTTTBTHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------CCEEEEEeCCCcCHHHHHhhC
Confidence 9862 44566667788889999999999998644332222234444443 599999999999999999875
No 4
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=4.4e-23 Score=151.47 Aligned_cols=143 Identities=20% Similarity=0.298 Sum_probs=112.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|||+|+++ ..+.|++.||+|||..+... +.+|.++||+|+..... . +....+..+...+...+|+++||+|+
T Consensus 19 LFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~---~l~~~i~~Qa~~Ai~eADvilfvVD~ 93 (444)
T COG1160 19 LFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-D---ELQELIREQALIAIEEADVILFVVDG 93 (444)
T ss_pred HHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-h---HHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 69999999 78999999999999987433 67799999999943211 1 12234455666666778999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+++++..|.++.++|+..++|+++|+||+|...... ...++. .. ..-+++++||..|.|+.+|++++.+.+
T Consensus 94 ~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~------~~~efy-sl--G~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 94 REGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE------LAYEFY-SL--GFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh------hHHHHH-hc--CCCCceEeehhhccCHHHHHHHHHhhc
Confidence 999999999999999988899999999999863221 111111 12 235899999999999999999999876
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=4.1e-22 Score=139.44 Aligned_cols=147 Identities=21% Similarity=0.261 Sum_probs=114.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|.|+ ..+.+|++|.|||.... +.. +.++.++||||+.... ....+.+.+.+..+...+|+++||+|+
T Consensus 22 LlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvDlilfvvd~ 95 (298)
T COG1159 22 LLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVDLILFVVDA 95 (298)
T ss_pred HHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCcEEEEEEec
Confidence 68999999 68999999999996554 333 6679999999985441 112234556666777888999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
.+++...+..+++.++..+.|+++++||+|.++... .....+. +..... ...++++||++|.|++.|.+.+...
T Consensus 96 ~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~----~~~~~~-f~~ivpiSA~~g~n~~~L~~~i~~~ 170 (298)
T COG1159 96 DEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAF----LKKLLP-FKEIVPISALKGDNVDTLLEIIKEY 170 (298)
T ss_pred cccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHH----HHhhCC-cceEEEeeccccCCHHHHHHHHHHh
Confidence 999999998899999887789999999999987665 3332222 222222 2499999999999999999999887
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
++
T Consensus 171 Lp 172 (298)
T COG1159 171 LP 172 (298)
T ss_pred CC
Confidence 65
No 6
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=3.6e-21 Score=131.14 Aligned_cols=155 Identities=38% Similarity=0.597 Sum_probs=122.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++....+.+++.+|+|+.+.++..+.++.++||||++........++.+...+..++.....++++++++|+..+
T Consensus 40 li~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 119 (196)
T PRK00454 40 LINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHP 119 (196)
T ss_pred HHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCC
Confidence 58899987446788999999999888877778999999998765444445666777778888877778899999998877
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
....+.++..++...++|+++++||+|+.+..+.+...+.+...+... ..+++++||+++.|++++++.|...+.
T Consensus 120 ~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 120 LKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG---DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 766666667777777899999999999987665555555565555543 258999999999999999999987764
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=148.36 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=120.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|+++ ..+.+++.||||++.....+ +.+|.++||+|......-....|.+. +.+.+.+...++++++|+|+
T Consensus 194 LiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~S--v~rt~~aI~~a~vvllviDa 270 (444)
T COG1160 194 LINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYS--VARTLKAIERADVVLLVIDA 270 (444)
T ss_pred HHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEe--ehhhHhHHhhcCEEEEEEEC
Confidence 68999999 78999999999998876444 66799999999955422111112121 33445555667999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+++++.++..++.++.+.+.++++|+||+|++++ ....+..+.++..+... .+.+++++||++|.|++++++.+.+
T Consensus 271 ~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l--~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 271 TEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL--DFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred CCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccc--cCCeEEEEEecCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999876 44555556666655444 4579999999999999999999987
Q ss_pred hhh
Q 031293 156 IAR 158 (162)
Q Consensus 156 ~~~ 158 (162)
...
T Consensus 349 ~~~ 351 (444)
T COG1160 349 IYE 351 (444)
T ss_pred HHH
Confidence 654
No 8
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.87 E-value=5.9e-21 Score=148.64 Aligned_cols=145 Identities=21% Similarity=0.345 Sum_probs=117.6
Q ss_pred ChhcccCCC-CceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|+|.+ .....+..+|.|.++.+..+ +..+.+|||||| +++++.++.+...+|++++|+
T Consensus 16 Li~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-------------e~fi~~m~~g~~~~D~~lLVV 82 (614)
T PRK10512 16 LLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-------------EKFLSNMLAGVGGIDHALLVV 82 (614)
T ss_pred HHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-------------HHHHHHHHHHhhcCCEEEEEE
Confidence 578998863 12335567899998876544 445899999999 788888888889999999999
Q ss_pred ecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 76 DTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
|+.+++..++.+++..+...++| +++|+||+|+.++.......+.+.+.+...+....+++++||++|.|+++|+++|.
T Consensus 83 da~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~ 162 (614)
T PRK10512 83 ACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLL 162 (614)
T ss_pred ECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHH
Confidence 99999999999999888888888 57999999998766666666677777665554446899999999999999999998
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+...
T Consensus 163 ~~~~ 166 (614)
T PRK10512 163 QLPE 166 (614)
T ss_pred Hhhc
Confidence 7543
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=9.2e-21 Score=135.15 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=102.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EE-eCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FK-LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~-~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++++|++|++... .. .+.++.++||||+..... . ....+.+.+......+|++++|+|+
T Consensus 16 Lln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~---l~~~~~~~~~~~l~~aDvvl~VvD~ 89 (270)
T TIGR00436 16 LLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--S---LNRLMMKEARSAIGGVDLILFVVDS 89 (270)
T ss_pred HHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--h---HHHHHHHHHHHHHhhCCEEEEEEEC
Confidence 68999999 57889999999986542 11 245699999999854311 1 1122334444455678999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+...... ..++..+...+.|+++|+||+|+..+..... .+........ ..+++++||++|.|+++++++|.+.+
T Consensus 90 ~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~---~~~~~~~~~~--~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 90 DQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLP---LIDKYAILED--FKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred CCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHH---HHHHHHhhcC--CCceEEEecCCCCCHHHHHHHHHHhC
Confidence 8754332 4556677777899999999999975443322 2222222221 23899999999999999999998876
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 164 ~ 164 (270)
T TIGR00436 164 P 164 (270)
T ss_pred C
Confidence 4
No 10
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=6.4e-21 Score=129.29 Aligned_cols=128 Identities=25% Similarity=0.424 Sum_probs=102.4
Q ss_pred CCCcceEEEEEE-----eCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 17 KPGLTQTINFFK-----LGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 17 ~~g~t~~~~~~~-----~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
..|.|....... .+..++++||||+ ..++++..++...+|++++|+|+.+++.....+++..
T Consensus 51 ~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-------------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~ 117 (188)
T PF00009_consen 51 ERGITIDLSFISFEKNENNRKITLIDTPGH-------------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKI 117 (188)
T ss_dssp HCTSSSSSEEEEEEBTESSEEEEEEEESSS-------------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH
T ss_pred hcccccccccccccccccccceeecccccc-------------cceeecccceecccccceeeeeccccccccccccccc
Confidence 456666544432 2456999999999 7788888888889999999999999999999999999
Q ss_pred HHHhCCceEEEEeccCCCCcHHHHHHHHHHH-HHHHhcCCC---CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 92 MERSQTKYQVVLTKTDTVFPIDVARRAMQIE-ESLKANNSL---VQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 92 l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~---~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+...++|+++|+||+|+. .....+..+.+. ..++..+.. ..|++++||++|.|+++|++.|.+.++
T Consensus 118 ~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 118 LRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 999999999999999999 555666666666 334444322 468999999999999999999998765
No 11
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=4.8e-20 Score=121.95 Aligned_cols=141 Identities=28% Similarity=0.391 Sum_probs=97.1
Q ss_pred ChhcccCCCCcee--ccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEE
Q 031293 1 MLNALTRQWGVVR--TSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL 74 (162)
Q Consensus 1 lin~L~~~~~~~~--~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 74 (162)
|+|+|++.. ... ....+++|.+..+... +.++.+|||||+ +.+...+......+|++++|
T Consensus 16 l~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~-------------~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 16 LIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH-------------EKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred HHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh-------------HHHHHHHHhhhhcCCEEEEE
Confidence 578888762 222 2335677776654322 456899999999 45555555556678999999
Q ss_pred eecCCCCCccHHHHHHHHHHhCC-ceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 75 IDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 75 id~~~~~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
+|+++++.....+.+..+...+. |+++++||+|+..........+.+.+.+...+....+++++||++|+|+++++.++
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHH
Confidence 99987655555555555555555 89999999999865433334445555555432234699999999999999999988
Q ss_pred HH
Q 031293 154 SK 155 (162)
Q Consensus 154 ~~ 155 (162)
..
T Consensus 162 ~~ 163 (164)
T cd04171 162 DE 163 (164)
T ss_pred hh
Confidence 64
No 12
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=1.6e-19 Score=119.67 Aligned_cols=155 Identities=41% Similarity=0.670 Sum_probs=121.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++.......+.+++.|.....+..+..+.++||||++....+...++.+...+..++....+++.+++++|....
T Consensus 15 L~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 94 (170)
T cd01876 15 LINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG 94 (170)
T ss_pred HHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC
Confidence 57888854356778889999988888777778999999999887666666666777788888887788999999999877
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
......++..++...+.|+++++||+|+.+..............+.. .....+++++||+++.|+++++++|.+.
T Consensus 95 ~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 95 PTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 66666777788888889999999999998665554444444444431 1223589999999999999999999875
No 13
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=2.3e-20 Score=126.98 Aligned_cols=145 Identities=23% Similarity=0.332 Sum_probs=101.6
Q ss_pred ChhcccCCC-----CceeccCCCCcceEEEEEEe-----------------CCceEEEcCCCCcccccCHHHHHHHHHHH
Q 031293 1 MLNALTRQW-----GVVRTSDKPGLTQTINFFKL-----------------GTKLCLVDLPGYGFAYAKEEVKDAWEELV 58 (162)
Q Consensus 1 lin~L~~~~-----~~~~~~~~~g~t~~~~~~~~-----------------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~ 58 (162)
|+|+|++.. .....+..+|+|.+..+... +..+.++||||+ ..++
T Consensus 16 Li~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-------------~~~~ 82 (192)
T cd01889 16 LAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-------------ASLI 82 (192)
T ss_pred HHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc-------------HHHH
Confidence 456666521 12234557788876664211 346899999999 5667
Q ss_pred HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH----hcCCCCCC
Q 031293 59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK----ANNSLVQP 134 (162)
Q Consensus 59 ~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~ 134 (162)
..+..+...+|++++|+|+..+....+.+.+......+.|+++++||+|+......+...+.+++.+. ..+....+
T Consensus 83 ~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (192)
T cd01889 83 RTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSP 162 (192)
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 77777777789999999998876655555555555567899999999999865544444444444332 22223468
Q ss_pred eEEeecCCCCCHHHHHHHHHHhhh
Q 031293 135 VMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 135 i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
++++||++|.|+++|++++.+++.
T Consensus 163 vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 163 IIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred EEEEeccCCCCHHHHHHHHHhccc
Confidence 999999999999999999998764
No 14
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=3.2e-20 Score=144.04 Aligned_cols=145 Identities=24% Similarity=0.368 Sum_probs=114.0
Q ss_pred ChhcccCCCC-ceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWG-VVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++.+. .......+|+|.+..+..+ +..+.+||+||| +.+++.++.+..++|++++|+|
T Consensus 16 Li~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-------------e~f~~~~~~g~~~aD~aILVVD 82 (581)
T TIGR00475 16 LLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-------------EKFISNAIAGGGGIDAALLVVD 82 (581)
T ss_pred HHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEE
Confidence 5788987631 1223457889988876443 346899999999 7888888888889999999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCC-CCCeEEeecCCCCCHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSL-VQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+.+++..++.+++..+...++| +++|+||+|+.++.......+.+.+.+...+.. ..+++++||++|.|+++++.+|.
T Consensus 83 a~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~ 162 (581)
T TIGR00475 83 ADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK 162 (581)
T ss_pred CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence 9998888888888888888999 999999999987665555555666655544322 46999999999999999999998
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+.++
T Consensus 163 ~l~~ 166 (581)
T TIGR00475 163 NLLE 166 (581)
T ss_pred HHHH
Confidence 7654
No 15
>PRK04213 GTP-binding protein; Provisional
Probab=99.85 E-value=1.6e-19 Score=123.61 Aligned_cols=153 Identities=25% Similarity=0.396 Sum_probs=105.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccccc-CHHHHHHHHHHHHHHHh-cCcccceeEEEeecC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVS-TRVSLKRVCLLIDTK 78 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~vi~vid~~ 78 (162)
|+|+|++. . ..++..||+|+....+..+ ++.+|||||+|.... +...++.+...+..++. +...++++++|+|+.
T Consensus 25 Lin~l~~~-~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 101 (201)
T PRK04213 25 LVRELTGK-K-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGK 101 (201)
T ss_pred HHHHHhCC-C-CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCc
Confidence 58999887 2 5578899999887766666 599999999866432 33335666666666665 556779999999986
Q ss_pred CCC-----------CccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC-C--CCCeEEeecCCCC
Q 031293 79 WGV-----------KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS-L--VQPVMMVSSKSGA 144 (162)
Q Consensus 79 ~~~-----------~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~Sa~~~~ 144 (162)
... ...+.+++..+...++|+++|+||+|+.... .+..+.+.+.++.... . ..+++++||++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g- 178 (201)
T PRK04213 102 SFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG- 178 (201)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-
Confidence 421 1123455666666789999999999997543 2223344433332100 0 126899999999
Q ss_pred CHHHHHHHHHHhhhh
Q 031293 145 GIRSLRTVLSKIARF 159 (162)
Q Consensus 145 g~~~l~~~i~~~~~~ 159 (162)
|+++++++|.+.+..
T Consensus 179 gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 179 GIEELKEAIRKRLHE 193 (201)
T ss_pred CHHHHHHHHHHhhcC
Confidence 999999999987653
No 16
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=9.1e-20 Score=137.87 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=109.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....+++.||+|++.....+ +.++.++||||+.....-....+.+. ..+.+...+.+|++++|+|+
T Consensus 188 Lin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~--~~~~~~~~~~ad~~ilV~D~ 264 (429)
T TIGR03594 188 LVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS--VLRTLKAIERADVVLLVLDA 264 (429)
T ss_pred HHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH--HHHHHHHHHhCCEEEEEEEC
Confidence 57999988 56778999999987654322 45699999999854422111111111 22333444567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
.++.+..+..++..+...++|+++|+||+|+. +........+.++..+... ...+++++||++|.|++++++++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 265 TEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFL--DFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccC--CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 99988888888888877789999999999998 3333444444444433322 23699999999999999999999876
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
+.
T Consensus 343 ~~ 344 (429)
T TIGR03594 343 YE 344 (429)
T ss_pred HH
Confidence 54
No 17
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.84 E-value=4e-20 Score=139.42 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=95.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-CCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
.+.++||||| +.++++++.+...+|.+++|+|+.++ ...+..+++..+...+++ +++|+||+|+.
T Consensus 118 ~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 118 HVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred eEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence 5899999999 88999999999999999999999986 567777888777777765 78999999998
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.....+..+.+++.+........+++++||++|.|++.|+++|.+.++
T Consensus 185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 7666666667777766544444579999999999999999999996554
No 18
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.2e-19 Score=136.01 Aligned_cols=153 Identities=21% Similarity=0.228 Sum_probs=111.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..||+|++.....+ +.++.++||||+.....-....+.+. ....+...+.+|++++|+|+
T Consensus 189 lin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~--~~~~~~~~~~ad~~ilViD~ 265 (435)
T PRK00093 189 LINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS--VIRTLKAIERADVVLLVIDA 265 (435)
T ss_pred HHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH--HHHHHHHHHHCCEEEEEEeC
Confidence 58999988 56788999999997654322 55699999999855422111112111 23334445667999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
..+.+..+..++..+...++|+++|+||+|+.++....+..+.+...+... ...+++++||++|.|++++++.+.+..
T Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~--~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 266 TEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFL--DYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccc--cCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999988888888888777899999999999986555555445555444322 336999999999999999999987654
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 344 ~ 344 (435)
T PRK00093 344 E 344 (435)
T ss_pred H
Confidence 3
No 19
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=2.3e-20 Score=137.64 Aligned_cols=142 Identities=23% Similarity=0.277 Sum_probs=109.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|+++ ..+.|++.||||||+....+ |..+.++||+|..+. .+..| ..-+++.......+|++++|+|+
T Consensus 233 LLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet---~d~VE--~iGIeRs~~~i~~ADlvL~v~D~ 306 (454)
T COG0486 233 LLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET---DDVVE--RIGIERAKKAIEEADLVLFVLDA 306 (454)
T ss_pred HHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC---ccHHH--HHHHHHHHHHHHhCCEEEEEEeC
Confidence 68999999 68999999999999987655 667999999999654 22222 22366666777788999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.+..+..++. +...+.|+++|+||+|+.++..... .. .. ...+++.+|+++|+|++.|.++|.+.+
T Consensus 307 ~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~--------~~-~~-~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 307 SQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELES--------EK-LA-NGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred CCCCchhhHHHHH-hcccCCCEEEEEechhcccccccch--------hh-cc-CCCceEEEEecCccCHHHHHHHHHHHH
Confidence 9987777777777 4445789999999999986554221 11 11 113799999999999999999999876
Q ss_pred hh
Q 031293 158 RF 159 (162)
Q Consensus 158 ~~ 159 (162)
..
T Consensus 376 ~~ 377 (454)
T COG0486 376 GK 377 (454)
T ss_pred hh
Confidence 53
No 20
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=3.2e-19 Score=117.15 Aligned_cols=141 Identities=20% Similarity=0.308 Sum_probs=100.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..|++|++...... +..+.++||||++.... ... ..+...+......+|++++++|+
T Consensus 13 l~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~---~~~~~~~~~~~~~~d~ii~v~d~ 86 (157)
T cd01894 13 LFNRLTGR-RDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GIS---KEIREQAELAIEEADVILFVVDG 86 (157)
T ss_pred HHHHHhCC-cEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHH---HHHHHHHHHHHHhCCEEEEEEec
Confidence 57899988 45677888999876655433 45689999999955321 111 22233333344557999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
..+.+..+.++.+++...+.|+++|+||+|+...... ... +...+ ..+++++|+++|.|++++++++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~----~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 87 REGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAE----FYSLG--FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred cccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHH----HHhcC--CCCeEEEecccCCCHHHHHHHHHhh
Confidence 8877777777778888778999999999999864432 111 22222 2378999999999999999999865
No 21
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.5e-19 Score=136.60 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=106.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..||+|++.... .. +..+.+|||||+..........+.+.... .....+.+|++++|+|+
T Consensus 227 Lin~l~~~-~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~--~~~~i~~ad~vilV~Da 303 (472)
T PRK03003 227 LLNKLAGE-ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR--THAAIEAAEVAVVLIDA 303 (472)
T ss_pred HHHHHhCC-CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH--HHHHHhcCCEEEEEEeC
Confidence 68999998 467789999999876532 22 55689999999844321111122222211 11223457999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.++.+..+..++..+...++|+++|+||+|+.+........+.+.+.+... ...+++++||++|.|+++++..+.+.+
T Consensus 304 ~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~--~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 304 SEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQV--PWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccC--CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 998888888887777777899999999999985433222223333333322 236899999999999999999998876
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 382 ~ 382 (472)
T PRK03003 382 E 382 (472)
T ss_pred H
Confidence 5
No 22
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.83 E-value=2.4e-19 Score=124.31 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=94.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCc--ccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+..++++||||+ +++.+.++.+.. .+|++++|+|+..+....+.+++.++...++|+++|+||+|
T Consensus 83 ~~~i~liDtpG~-------------~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D 149 (224)
T cd04165 83 SKLVTFIDLAGH-------------ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred CcEEEEEECCCc-------------HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 456999999999 677777776664 68999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHh-----------------------cCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRAMQIEESLKA-----------------------NNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.++.......+.+.+.+.. ......|++++||++|+|+++|+..|..+
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 98777777777777776652 12234699999999999999999998754
No 23
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=1.9e-19 Score=131.88 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=104.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++++|++|++... +.. +.++.++||||+...... ....+.+.+......+|++++|+|+
T Consensus 68 Lin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-----l~~~~~r~~~~~l~~aDvil~VvD~ 141 (339)
T PRK15494 68 LLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-----LEKAMVRCAWSSLHSADLVLLIIDS 141 (339)
T ss_pred HHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-----HHHHHHHHHHHHhhhCCEEEEEEEC
Confidence 68999998 57789999999986543 233 557999999998432211 1123344444455678999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
..++...+..++..+...+.|.++|+||+|+.+. .. ..+.+.+.... ...+++++||++|.|+++++++|.+.+
T Consensus 142 ~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~----~~~~~~l~~~~-~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 142 LKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YL----NDIKAFLTENH-PDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cH----HHHHHHHHhcC-CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 8877776667777777778888899999998643 22 22333333222 124799999999999999999998866
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 216 ~ 216 (339)
T PRK15494 216 K 216 (339)
T ss_pred C
Confidence 4
No 24
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=4.4e-19 Score=121.64 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=89.7
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-CCccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl 108 (162)
.++.+|||||+ ..++..++.+...+|++++|+|+..+ ......+.+..+...++ |+++|+||+|+
T Consensus 83 ~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 56899999999 77888888888899999999999874 44455566666655565 68999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+........+.+++.+........+++++||++|.|+++|+++|.+.++
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 86555555556666665543333468999999999999999999988764
No 25
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=6.3e-19 Score=119.87 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=99.6
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
...+|+|.+.....+ +.++.++||||+ ..++..+..+...+|++++|+|+.+++...+.+++..
T Consensus 46 E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~ 112 (195)
T cd01884 46 EKARGITINTAHVEYETANRHYAHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL 112 (195)
T ss_pred hhhcCccEEeeeeEecCCCeEEEEEECcCH-------------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 347888887765444 456999999999 7788888888889999999999999988888889998
Q ss_pred HHHhCCc-eEEEEeccCCCCcHHH-HHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCH----------HHHHHHHHHh
Q 031293 92 MERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNS--LVQPVMMVSSKSGAGI----------RSLRTVLSKI 156 (162)
Q Consensus 92 l~~~~~~-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~----------~~l~~~i~~~ 156 (162)
+...++| +++++||+|++...+. +...+++++.+...+. ...+++++||++|.+. ..|+++|.+.
T Consensus 113 ~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 113 ARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred HHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 9888887 7899999999754443 3344566666665432 3479999999999874 4666666543
No 26
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=6.5e-19 Score=127.07 Aligned_cols=147 Identities=21% Similarity=0.239 Sum_probs=105.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|+|. ..+.+++.|++|+.... ... +.++.++||||+..... ... ..+...+......+|++++++|+
T Consensus 21 Lin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~---~~~~~~~~~~~~~~D~il~vvd~ 94 (292)
T PRK00089 21 LLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALN---RAMNKAAWSSLKDVDLVLFVVDA 94 (292)
T ss_pred HHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHH---HHHHHHHHHHHhcCCEEEEEEeC
Confidence 68999999 67889999999986543 222 35799999999854321 111 12233334445667999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
..++...+..++..+...+.|+++|+||+|+. +........+.+.+ .. ...+++++||+++.|+++++++|.+.
T Consensus 95 ~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~--~~~~i~~iSA~~~~gv~~L~~~L~~~ 169 (292)
T PRK00089 95 DEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE---LM--DFAEIVPISALKGDNVDELLDVIAKY 169 (292)
T ss_pred CCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hC--CCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 88777777777777776679999999999998 33444433333332 12 23589999999999999999999887
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
++
T Consensus 170 l~ 171 (292)
T PRK00089 170 LP 171 (292)
T ss_pred CC
Confidence 63
No 27
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=2.7e-18 Score=114.30 Aligned_cols=151 Identities=23% Similarity=0.276 Sum_probs=102.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. .....+..|++|+.... +.. +..+.+|||||++.........+.+. ....+.....+|++++|+|+
T Consensus 18 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~--~~~~~~~~~~~d~vi~v~d~ 94 (174)
T cd01895 18 LVNALLGE-ERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS--VLRTLKAIERADVVLLVIDA 94 (174)
T ss_pred HHHHHhCc-cceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH--HHHHHHHHhhcCeEEEEEeC
Confidence 57889887 45667778888875532 223 45689999999865422111111111 12223334567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
..+.+.....++..+...+.|+++++||+|+.+. .......+.+++.+... ...+++++||+++.|++++++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 95 TEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL--DYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc--cCCceEEEeccCCCCHHHHHHHHHH
Confidence 8887776666666666678999999999999865 33444444444433322 2358999999999999999999886
Q ss_pred h
Q 031293 156 I 156 (162)
Q Consensus 156 ~ 156 (162)
+
T Consensus 173 ~ 173 (174)
T cd01895 173 V 173 (174)
T ss_pred h
Confidence 5
No 28
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=4.2e-18 Score=124.29 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=98.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+++++|++|+....- .. +.++.++|+||+.+..... ..+...+++..+.++++++|+|
T Consensus 174 Lln~ls~a--~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD 245 (335)
T PRK12299 174 LISAVSAA--KPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVD 245 (335)
T ss_pred HHHHHHcC--CCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEc
Confidence 68999987 46789999999977653 33 3469999999985432110 1223344555566799999999
Q ss_pred cCCCCCccHH-HHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 77 TKWGVKPRDH-ELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 77 ~~~~~~~~~~-~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
++..-+..+. .+...+.. .++|+++|+||+|+.+...... +..+......+ .+++++||++++|+++++
T Consensus 246 ~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~--~~~~~~~~~~~---~~i~~iSAktg~GI~eL~ 320 (335)
T PRK12299 246 IEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEERE--KRAALELAALG---GPVFLISAVTGEGLDELL 320 (335)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHH--HHHHHHHHhcC---CCEEEEEcCCCCCHHHHH
Confidence 8754322222 23344433 2689999999999975443221 11222222222 589999999999999999
Q ss_pred HHHHHhhhhhc
Q 031293 151 TVLSKIARFAK 161 (162)
Q Consensus 151 ~~i~~~~~~~k 161 (162)
++|.+.++.++
T Consensus 321 ~~L~~~l~~~~ 331 (335)
T PRK12299 321 RALWELLEEAR 331 (335)
T ss_pred HHHHHHHHhhh
Confidence 99998876543
No 29
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1.8e-18 Score=116.89 Aligned_cols=128 Identities=21% Similarity=0.309 Sum_probs=91.2
Q ss_pred CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293 18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER 94 (162)
Q Consensus 18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~ 94 (162)
+|+|....+... +..+.++||||+ ..+..........+|++++|+|+..+......+++..+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~liDtpG~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 112 (189)
T cd00881 46 RGITIKSGVATFEWPDRRVNFIDTPGH-------------EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE 112 (189)
T ss_pred cCCCeecceEEEeeCCEEEEEEeCCCc-------------HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 445554433322 446899999998 2222222222345699999999998776666677777776
Q ss_pred hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcC-----------CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.++|+++|+||+|+..+.......+.+++.+...+ ....+++++||++|.|+++++.++.+.++
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 78999999999999865555555566666655433 23579999999999999999999987654
No 30
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.3e-18 Score=126.07 Aligned_cols=141 Identities=22% Similarity=0.340 Sum_probs=118.9
Q ss_pred ChhcccCCC-CceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+.+|++.. ...+...+.|+|.|+.++.. +....++|.||| ++++..++.+...+|.++++++
T Consensus 16 L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-------------~~~i~~miag~~~~d~alLvV~ 82 (447)
T COG3276 16 LLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-------------PDFISNLLAGLGGIDYALLVVA 82 (447)
T ss_pred hhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-------------HHHHHHHHhhhcCCceEEEEEe
Confidence 345666653 23457778999999999876 446999999999 9999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+.+++..++.+++..++..+++- ++|+||+|..++...++..+.+.+.+. ....+++.+|+.+|+|+++|...|.+
T Consensus 83 ~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 83 ADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred CccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---cccccccccccccCCCHHHHHHHHHH
Confidence 99999999999999999999885 999999999987776666555554444 34468999999999999999999998
Q ss_pred hh
Q 031293 156 IA 157 (162)
Q Consensus 156 ~~ 157 (162)
+.
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 76
No 31
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=4.6e-18 Score=135.18 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=106.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..||+|++.... .. +.++.++||||+..........+.+.. + ......+.+|++++|+|+
T Consensus 466 Lin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~-~-r~~~~i~~advvilViDa 542 (712)
T PRK09518 466 LLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSS-L-RTQAAIERSELALFLFDA 542 (712)
T ss_pred HHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHH-H-HHHHHhhcCCEEEEEEEC
Confidence 68999998 467789999999876532 22 556899999998443221111222221 1 122334567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
..+.+..+..++..+...++|+++|+||+|+.+....+...+.+...+. .....+++++||++|.|++++++.+.+..
T Consensus 543 t~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~--~~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 543 SQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFD--RVTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhcc--CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9988888887777777778999999999999864433322223332222 22346889999999999999999998876
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 621 ~ 621 (712)
T PRK09518 621 E 621 (712)
T ss_pred H
Confidence 5
No 32
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.79 E-value=3.8e-18 Score=112.24 Aligned_cols=142 Identities=23% Similarity=0.286 Sum_probs=95.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..||+|.+... +.. +..+.++||||+........ ...+...++.. ..+|++++|+|+
T Consensus 12 l~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~~~d~vi~v~d~ 84 (158)
T cd01879 12 LFNALTGA--RQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-EKPDLIVNVVDA 84 (158)
T ss_pred HHHHHhcC--cccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-CCCcEEEEEeeC
Confidence 57889888 3677888998886643 233 45699999999854321110 02234445443 567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
... .....+...+...++|+++|+||+|+.+........+.+.+. .+ .+++++||.+|.|+++++.++.+..
T Consensus 85 ~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 85 TNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL---LG---VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred Ccc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh---hC---CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 864 223344455566789999999999997654333222222222 22 4899999999999999999998764
No 33
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.6e-18 Score=126.88 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=97.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--C--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+++++|+||+......+ + ..+.++||||+....... ..+...+++....++++++|+|
T Consensus 175 Lln~Lt~~--k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~------~~Lg~~~l~~i~radvlL~VVD 246 (390)
T PRK12298 175 FIRAVSAA--KPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG------AGLGIRFLKHLERCRVLLHLID 246 (390)
T ss_pred HHHHHhCC--cccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch------hhHHHHHHHHHHhCCEEEEEec
Confidence 68999998 3589999999997776433 3 359999999985532110 1122334445566799999999
Q ss_pred cCC----CCCccHHHHHHHHHHh-----CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 77 TKW----GVKPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 77 ~~~----~~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
+.. ........+++.+... ++|+++|+||+|+.......+.++.+.+. ... ..+++++||+++.|++
T Consensus 247 ~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~---~~~-~~~Vi~ISA~tg~GId 322 (390)
T PRK12298 247 IAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA---LGW-EGPVYLISAASGLGVK 322 (390)
T ss_pred cCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH---hCC-CCCEEEEECCCCcCHH
Confidence 762 1112223344444432 58999999999998655443333333222 211 1378999999999999
Q ss_pred HHHHHHHHhhh
Q 031293 148 SLRTVLSKIAR 158 (162)
Q Consensus 148 ~l~~~i~~~~~ 158 (162)
+++++|.+.++
T Consensus 323 eLl~~I~~~L~ 333 (390)
T PRK12298 323 ELCWDLMTFIE 333 (390)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=3.7e-18 Score=129.11 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=105.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++...... +.++.++||||++... ...++.+ ..........+|++++|+|+
T Consensus 15 L~n~l~~~-~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~---~~~~~~~~~~ad~vl~vvD~ 88 (429)
T TIGR03594 15 LFNRLTGK-RDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQI---REQAEIAIEEADVILFVVDG 88 (429)
T ss_pred HHHHHhCC-CcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHH---HHHHHHHHhhCCEEEEEEeC
Confidence 68999998 46789999999997765433 5679999999985321 1122222 23333344556999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.+..+.++.+++++.++|+++|+||+|+.+..... .+ +... ...+++++||..|.|++++++++.+.+
T Consensus 89 ~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~------~~-~~~l--g~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 89 REGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA------AE-FYSL--GFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH------HH-HHhc--CCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 99988888888899988899999999999987543211 11 1112 224799999999999999999998765
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 160 ~ 160 (429)
T TIGR03594 160 P 160 (429)
T ss_pred C
Confidence 3
No 35
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=9.5e-18 Score=111.44 Aligned_cols=142 Identities=22% Similarity=0.294 Sum_probs=92.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe------CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEE
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLL 74 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v 74 (162)
|+|+|++. . ......+++|++...+.. +..+.++||||+. .+..+... ....+|++++|
T Consensus 16 li~~l~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~~---~~~~~d~il~v 80 (168)
T cd01887 16 LLDKIRKT-N-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMRAR---GASLTDIAILV 80 (168)
T ss_pred HHHHHHhc-c-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHHHH---HHhhcCEEEEE
Confidence 57888776 2 233455677776654333 3469999999982 11222222 23456999999
Q ss_pred eecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh---cCCCCCCeEEeecCCCCCHHHHHH
Q 031293 75 IDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA---NNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 75 id~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
+|+.++........+..+...++|+++|+||+|+..... ......+...... ......+++++||++|.|++++++
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence 999877655566666777777899999999999874321 1111222211110 111236899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+..+
T Consensus 160 ~l~~~~~ 166 (168)
T cd01887 160 AILLLAE 166 (168)
T ss_pred HHHHhhh
Confidence 9987653
No 36
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=2.1e-18 Score=125.68 Aligned_cols=143 Identities=19% Similarity=0.230 Sum_probs=94.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE--e-C-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+++++|++|+...... + + .++.++||||+.+..... ..+...+++....++++++|+|
T Consensus 173 Ll~~lt~~--~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD 244 (329)
T TIGR02729 173 LISAVSAA--KPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLID 244 (329)
T ss_pred HHHHHhcC--CccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEc
Confidence 68899988 467899999998666533 3 2 579999999984431110 1223344444556799999999
Q ss_pred cCCC---CCccH-HHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 77 TKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 77 ~~~~---~~~~~-~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
+... -...+ ..+.+.+.. .++|+++|+||+|+.+.....+..+.+.+ ..+ .+++++||++++|++
T Consensus 245 ~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~---~~~---~~vi~iSAktg~GI~ 318 (329)
T TIGR02729 245 ISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK---ALG---KPVFPISALTGEGLD 318 (329)
T ss_pred CccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH---HcC---CcEEEEEccCCcCHH
Confidence 8753 11111 123333332 26899999999999865444333333322 222 489999999999999
Q ss_pred HHHHHHHHhh
Q 031293 148 SLRTVLSKIA 157 (162)
Q Consensus 148 ~l~~~i~~~~ 157 (162)
+++++|.+.+
T Consensus 319 eL~~~I~~~l 328 (329)
T TIGR02729 319 ELLYALAELL 328 (329)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 37
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=6.4e-18 Score=126.73 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=90.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl 108 (162)
..+.++||||| +.+...++.+...+|++++|+|++++. ..+..+++..+...++ |+++|+||+|+
T Consensus 80 ~~i~liDtPGh-------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 80 RRVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred cEEEEEECCCH-------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 46899999999 778888888888899999999999876 6677777777776665 58999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+........+.+.+.+........+++++||++|.|+++|+++|...++
T Consensus 147 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 86554444445555555433223468999999999999999999987543
No 38
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.78 E-value=2.4e-18 Score=114.62 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=91.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CC-ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ...++..|++|+..... .. +. ++.++||||+...... ...+...+++....+|++++|+|
T Consensus 16 l~~~l~~~--~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~~~~~~~~~~~~~d~vi~v~D 87 (170)
T cd01898 16 LLSAISNA--KPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE------GKGLGHRFLRHIERTRLLLHVID 87 (170)
T ss_pred HHHHHhcC--CccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc------cCCchHHHHHHHHhCCEEEEEEe
Confidence 57899887 34678888888755432 22 33 6999999998432110 01223334444456799999999
Q ss_pred cCCC-CCccH-HHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293 77 TKWG-VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 77 ~~~~-~~~~~-~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l 149 (162)
++.+ -+... ..+.+.+.. .++|+++|+||+|+.+........ ....... ...+++++||+++.|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~--~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 88 LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELL---KELLKEL--WGKPVFPISALTGEGLDEL 162 (170)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHH---HHHHhhC--CCCCEEEEecCCCCCHHHH
Confidence 9865 11111 223344433 258899999999998655543322 2223321 1258999999999999999
Q ss_pred HHHHHHh
Q 031293 150 RTVLSKI 156 (162)
Q Consensus 150 ~~~i~~~ 156 (162)
+++|.++
T Consensus 163 ~~~i~~~ 169 (170)
T cd01898 163 LRKLAEL 169 (170)
T ss_pred HHHHHhh
Confidence 9998765
No 39
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=1e-17 Score=125.28 Aligned_cols=141 Identities=15% Similarity=0.151 Sum_probs=96.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. .++++++|++|+.++...+ +..+.++|+||+..... ....+...+++....++++++|+|
T Consensus 174 LLn~Lt~a--k~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~------~~~gLg~~fLrhier~~llI~VID 245 (424)
T PRK12297 174 LLSVVSNA--KPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS------EGVGLGHQFLRHIERTRVIVHVID 245 (424)
T ss_pred HHHHHHcC--CCccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc------ccchHHHHHHHHHhhCCEEEEEEe
Confidence 68999988 4678999999998876544 45799999999965311 112344556666667899999999
Q ss_pred cCCC----CCccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 77 TKWG----VKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 77 ~~~~----~~~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
++.. .......+...|.. .++|+++|+||+|+.... +..+.+.+.+ . .+++++||++++|++
T Consensus 246 ~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~---e~l~~l~~~l---~---~~i~~iSA~tgeGI~ 316 (424)
T PRK12297 246 MSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE---ENLEEFKEKL---G---PKVFPISALTGQGLD 316 (424)
T ss_pred CCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH---HHHHHHHHHh---C---CcEEEEeCCCCCCHH
Confidence 8642 11112233444543 368999999999985322 1122332222 2 489999999999999
Q ss_pred HHHHHHHHhhh
Q 031293 148 SLRTVLSKIAR 158 (162)
Q Consensus 148 ~l~~~i~~~~~ 158 (162)
+|+++|.+.+.
T Consensus 317 eL~~~L~~~l~ 327 (424)
T PRK12297 317 ELLYAVAELLE 327 (424)
T ss_pred HHHHHHHHHHH
Confidence 99999987664
No 40
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=2e-17 Score=123.65 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=102.8
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+..+|+|.+.....+ +.++.++||||| +.++..++.+...+|++++|+|+.+++..++.+++.
T Consensus 55 ~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh-------------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~ 121 (394)
T PRK12736 55 EEKERGITINTAHVEYETEKRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred HHHhcCccEEEEeeEecCCCcEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH
Confidence 3447899988876555 456899999999 788888888888999999999999998888889998
Q ss_pred HHHHhCCc-eEEEEeccCCCCcHHHH-HHHHHHHHHHHhcCC--CCCCeEEeecCCCC--------CHHHHHHHHHHhhh
Q 031293 91 LMERSQTK-YQVVLTKTDTVFPIDVA-RRAMQIEESLKANNS--LVQPVMMVSSKSGA--------GIRSLRTVLSKIAR 158 (162)
Q Consensus 91 ~l~~~~~~-~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~--------g~~~l~~~i~~~~~ 158 (162)
.+...++| +++++||+|+.+..+.. ...+.+++.+...+. ...+++++||++|. ++++|++.+.+.++
T Consensus 122 ~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 122 LARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 88888999 67899999998544332 233466666654432 23689999999983 67888888877553
No 41
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=9.8e-18 Score=126.95 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=95.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|||+|++. ..+++++|++|+.++...+ +.++.++||||+..... . ...+-..+++....++++++|+|+
T Consensus 175 Lln~Ls~a--kpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-~-----g~gLg~~fLrhieradvLv~VVD~ 246 (500)
T PRK12296 175 LISALSAA--KPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-E-----GKGLGLDFLRHIERCAVLVHVVDC 246 (500)
T ss_pred HHHHHhcC--CccccccCcccccceEEEEEECCeEEEEEECCCCccccc-h-----hhHHHHHHHHHHHhcCEEEEEECC
Confidence 68999988 4678999999998776433 44699999999843211 0 012233445555677999999998
Q ss_pred CCC------CCccHHHHHHHH--------------HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEE
Q 031293 78 KWG------VKPRDHELISLM--------------ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMM 137 (162)
Q Consensus 78 ~~~------~~~~~~~~~~~l--------------~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 137 (162)
... +.... .+...| ...++|.++|+||+|+.+..... +.+.+.+...+ +++++
T Consensus 247 s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~---e~l~~~l~~~g---~~Vf~ 319 (500)
T PRK12296 247 ATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA---EFVRPELEARG---WPVFE 319 (500)
T ss_pred cccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH---HHHHHHHHHcC---CeEEE
Confidence 641 11111 111222 12368999999999997443322 22333333332 58999
Q ss_pred eecCCCCCHHHHHHHHHHhhhh
Q 031293 138 VSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 138 ~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
+||+++.|+++|+.+|.+.++.
T Consensus 320 ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 320 VSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887753
No 42
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.77 E-value=5.3e-18 Score=128.01 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=91.9
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHH
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELI 89 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~ 89 (162)
+..+|+|++..+..+ +.++.++||||+ +.+.+.+..+...+|++++|+|+.+ ++...+.+++
T Consensus 65 Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-------------~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 65 ERERGVTIDLAHKKFETDKYYFTIVDCPGH-------------RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred HhhcCccceeeeEEEecCCeEEEEEECCCc-------------ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 347999999887655 556999999999 6666677777778999999999998 7777777777
Q ss_pred HHHHHhCC-ceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293 90 SLMERSQT-KYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 90 ~~l~~~~~-~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~ 148 (162)
..+...++ |+++++||+|+.+. .......+.+++.+...+.. ..+++++||++|.|+++
T Consensus 132 ~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 77777776 58999999999752 22334445565555544321 35899999999999986
No 43
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=1.3e-17 Score=115.55 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=88.1
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCc
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKP 83 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~ 83 (162)
.+..+|+|++.....+ +.++.++||||+ ..+...++.+...+|++++|+|+..+ ...
T Consensus 57 ~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~-------------~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~ 123 (219)
T cd01883 57 EERERGVTIDVGLAKFETEKYRFTILDAPGH-------------RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGG 123 (219)
T ss_pred HHhhCccCeecceEEEeeCCeEEEEEECCCh-------------HHHHHHHHHHhhhCCEEEEEEECCCCcccccccccc
Confidence 4557889988776555 567999999999 66667777777788999999999873 334
Q ss_pred cHHHHHHHHHHhC-CceEEEEeccCCCC----cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHH
Q 031293 84 RDHELISLMERSQ-TKYQVVLTKTDTVF----PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 84 ~~~~~~~~l~~~~-~~~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~ 147 (162)
...+.+..+...+ .|+++++||+|+.. +.......+.++..+...+. ..++++++||++|.|++
T Consensus 124 ~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 124 QTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred chHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 4555555555556 57899999999973 33345555666655655432 23689999999999986
No 44
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=1.3e-17 Score=125.05 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=89.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl 108 (162)
.++.++||||+ ..++..++.+...+|++++|+|++++. ...+.+.+..+...++ |+++|+||+|+
T Consensus 85 ~~i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 46899999999 778889999888999999999999876 5666677777766665 58999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.++.......+.+.+.+........+++++||++|.|+++|+++|.+.++
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 87555444445555555433223468999999999999999999987543
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=3.7e-17 Score=124.80 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=100.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..||+|++...... +..+.++||||+.... ....+.+...... ....+|++++|+|+
T Consensus 54 L~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~---~~~~aD~il~VvD~ 127 (472)
T PRK03003 54 LVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEV---AMRTADAVLFVVDA 127 (472)
T ss_pred HHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHH---HHHhCCEEEEEEEC
Confidence 68999988 46778999999998776543 5569999999984221 1111222222222 33456999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.+..+..+...+...++|+++|+||+|+..... . ..+... .+. ..++++||++|.|+++++++|.+.+
T Consensus 128 ~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~----~~~~~~-~g~--~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 128 TVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--D----AAALWS-LGL--GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--h----hHHHHh-cCC--CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 988777777788888888899999999999864221 1 111111 121 2457999999999999999998765
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 199 ~ 199 (472)
T PRK03003 199 P 199 (472)
T ss_pred c
Confidence 3
No 46
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=2.8e-17 Score=130.79 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=103.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++...... +..+.+|||||+..... ... ..+..........+|++++|+|+
T Consensus 291 L~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~---~~~~~~~~~~~~~aD~iL~VvDa 364 (712)
T PRK09518 291 LVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GID---SAIASQAQIAVSLADAVVFVVDG 364 (712)
T ss_pred HHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHH---HHHHHHHHHHHHhCCEEEEEEEC
Confidence 68999998 46789999999998776543 45699999999853211 111 12233333334567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.++...+.++...++..++|+++|+||+|+...... ..+... .+. ..++++||++|.|+++++++|.+.+
T Consensus 365 ~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~------~~~~~~-lg~--~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 365 QVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD------AAEFWK-LGL--GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh------HHHHHH-cCC--CCeEEEECCCCCCchHHHHHHHHhc
Confidence 9888888888888888889999999999998643211 111111 121 3568999999999999999998765
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 436 ~ 436 (712)
T PRK09518 436 K 436 (712)
T ss_pred c
Confidence 3
No 47
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=120.84 Aligned_cols=158 Identities=29% Similarity=0.406 Sum_probs=126.2
Q ss_pred ChhcccCCCCceeccC-CCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSD-KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~-~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|.++.....+..+. ++|.|+.++++..+..|+++|.||+|....+......|..+.+.|+.+.++.-.+++++|+..
T Consensus 152 Lln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv 231 (320)
T KOG2486|consen 152 LLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV 231 (320)
T ss_pred HHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC
Confidence 5788888866676666 999999999999999999999999988866666667788999999999999899999999999
Q ss_pred CCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH------HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 80 GVKPRDHELISLMERSQTKYQVVLTKTDTVFPID------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 80 ~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
++...|....+++.+.++|+.+|+||+|...... ...+...+............|-+.+|+.++.|.+.|+-.|
T Consensus 232 ~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i 311 (320)
T KOG2486|consen 232 PIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHI 311 (320)
T ss_pred CCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeeh
Confidence 9999999999999999999999999999752221 1122222333333333334566789999999999999888
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+...
T Consensus 312 ~q~~~ 316 (320)
T KOG2486|consen 312 AQLRG 316 (320)
T ss_pred hhhhc
Confidence 76543
No 48
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=3.1e-17 Score=122.99 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=93.4
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+...|.|.+..+..+ +.++.++||||| +++...+..+...+|++++|+|+.+++..++.+++.
T Consensus 60 eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~ 126 (406)
T TIGR02034 60 AEREQGITIDVAYRYFSTDKRKFIVADTPGH-------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY 126 (406)
T ss_pred HHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH
Confidence 4456788888776544 457999999999 777888888888999999999999999888888888
Q ss_pred HHHHhCCc-eEEEEeccCCCCcH--HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 91 LMERSQTK-YQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 91 ~l~~~~~~-~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
.+...++| +++++||+|+.+.. ......+.+.+.+...+....+++++||++|.|+++
T Consensus 127 ~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 127 IASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 77777765 78899999997422 233344455444444443346899999999999885
No 49
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=128.27 Aligned_cols=142 Identities=21% Similarity=0.274 Sum_probs=104.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccc-cCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAY-AKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|||+|||. ..+|++.||+|.+.....+ +.++.++|.||..... .+.+ +...++|+.+. .+|+++.|+|
T Consensus 19 lFN~LTG~--~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D-----E~Var~~ll~~-~~D~ivnVvD 90 (653)
T COG0370 19 LFNALTGA--NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED-----EKVARDFLLEG-KPDLIVNVVD 90 (653)
T ss_pred HHHHHhcc--CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-----HHHHHHHHhcC-CCCEEEEEcc
Confidence 68999999 6899999999998776444 5569999999974442 2221 44566666533 4599999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
|..- .....+.-.+.+.++|+++++|++|...+....--.+.+++.++ .|++++||++|.|++++++++.+.
T Consensus 91 AtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG------vPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 91 ATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG------VPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred cchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC------CCEEEEEeecCCCHHHHHHHHHHh
Confidence 9752 23344445566789999999999998754444333345555554 699999999999999999999865
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
.+
T Consensus 163 ~~ 164 (653)
T COG0370 163 AE 164 (653)
T ss_pred cc
Confidence 43
No 50
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=3.3e-17 Score=108.92 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=89.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++.. ..+++.|++|........ +.++.++||||+....... +..+......++. ...|++++|+|+
T Consensus 16 li~~l~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~~~~--~~~d~~l~v~d~ 89 (168)
T cd01897 16 LVNKLTRAK--PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE--RNTIEMQAITALA--HLRAAVLFLFDP 89 (168)
T ss_pred HHHHHhcCC--CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC--CchHHHHHHHHHH--hccCcEEEEEeC
Confidence 578888873 346677888876664333 3469999999984321110 0111111111111 124889999999
Q ss_pred CCCCC---ccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 78 KWGVK---PRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 78 ~~~~~---~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
..... .....++..+... ++|+++|+||+|+........ .++.... ...+++++||++|.|+++++++
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~ 162 (168)
T cd01897 90 SETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----IEEEEEL---EGEEVLKISTLTEEGVDEVKNK 162 (168)
T ss_pred CcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----HHHhhhh---ccCceEEEEecccCCHHHHHHH
Confidence 76432 1122345555544 789999999999976554432 2222221 2358999999999999999999
Q ss_pred HHHhh
Q 031293 153 LSKIA 157 (162)
Q Consensus 153 i~~~~ 157 (162)
+.+.+
T Consensus 163 l~~~~ 167 (168)
T cd01897 163 ACELL 167 (168)
T ss_pred HHHHh
Confidence 98754
No 51
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=5.5e-17 Score=106.39 Aligned_cols=137 Identities=24% Similarity=0.306 Sum_probs=94.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..|++|.+...... +.++.++||||++...... ... ...........+|++++++|+
T Consensus 17 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-~~~----~~~~~~~~~~~~~~~v~v~d~ 90 (157)
T cd04164 17 LLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI-EKI----GIERAREAIEEADLVLFVIDA 90 (157)
T ss_pred HHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH-HHH----HHHHHHHHHhhCCEEEEEEEC
Confidence 57889888 56778889999987654322 4468999999986543211 111 122222333467999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
..+.+..+...+.. ..+.|+++|+||+|+.+.... . ......+++++||+++.|+++++++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------~---~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 91 SRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------L---SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------c---cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 97655544444333 457899999999999854432 1 111235899999999999999999998764
No 52
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=4.5e-17 Score=121.80 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=100.4
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+..+|+|.+.....+ +.++.++||||| +.++..+..+...+|++++|+|+.+++..++.+++.
T Consensus 55 ~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh-------------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~ 121 (396)
T PRK12735 55 EEKARGITINTSHVEYETANRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121 (396)
T ss_pred hHHhcCceEEEeeeEEcCCCcEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH
Confidence 3447888888765544 446999999999 788888888888999999999999888888888888
Q ss_pred HHHHhCCceE-EEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCCC----------CHHHHHHHHHHh
Q 031293 91 LMERSQTKYQ-VVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKI 156 (162)
Q Consensus 91 ~l~~~~~~~i-vv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~----------g~~~l~~~i~~~ 156 (162)
.+...++|.+ +++||+|+.+..+ .+...+.+++.+...+. ...+++++||.+|. ++..|++.|.+.
T Consensus 122 ~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 122 LARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 8888889965 6799999985433 23333456666655432 23689999999983 788888888875
Q ss_pred h
Q 031293 157 A 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 202 ~ 202 (396)
T PRK12735 202 I 202 (396)
T ss_pred C
Confidence 4
No 53
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=3.3e-17 Score=120.46 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=91.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. . ..+++.|++|++.....+ +..+.++||||+-.. .+....+.+ +..+.....+|++++|+|
T Consensus 205 Lln~L~~~-~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~~lie~f----~~tle~~~~ADlil~VvD 277 (351)
T TIGR03156 205 LFNALTGA-D-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPHELVAAF----RATLEEVREADLLLHVVD 277 (351)
T ss_pred HHHHHhCC-c-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc-CCHHHHHHH----HHHHHHHHhCCEEEEEEE
Confidence 68999998 3 678889999987765322 457999999998221 112222223 233334456799999999
Q ss_pred cCCCCCccHHH-HHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
++.+....... +...+.. .++|+++|+||+|+.+..... .. .. . ..+++++||++|.|+++|+++
T Consensus 278 ~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~---~~-~---~~~~i~iSAktg~GI~eL~~~ 346 (351)
T TIGR03156 278 ASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RL---EE-G---YPEAVFVSAKTGEGLDLLLEA 346 (351)
T ss_pred CCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HH---Hh-C---CCCEEEEEccCCCCHHHHHHH
Confidence 98765433321 2233333 368999999999997543221 11 11 1 136899999999999999999
Q ss_pred HHHh
Q 031293 153 LSKI 156 (162)
Q Consensus 153 i~~~ 156 (162)
|.+.
T Consensus 347 I~~~ 350 (351)
T TIGR03156 347 IAER 350 (351)
T ss_pred HHhh
Confidence 8764
No 54
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.75 E-value=5.6e-17 Score=111.64 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=86.1
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
+..+|+|++...... +.++.++||||+ ..+...+......+|++++|+|+..+....+..+...
T Consensus 58 e~~rg~T~~~~~~~~~~~~~~~~liDTpG~-------------~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~ 124 (208)
T cd04166 58 EREQGITIDVAYRYFSTPKRKFIIADTPGH-------------EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYI 124 (208)
T ss_pred hhcCCcCeecceeEEecCCceEEEEECCcH-------------HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 445888887765433 557999999999 4555555556677899999999998876666666666
Q ss_pred HHHhCCc-eEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 92 MERSQTK-YQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 92 l~~~~~~-~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
+...+.| +++|+||+|+... .........+++.+...+....+++++||++|.|+++
T Consensus 125 ~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 6666655 6779999999742 2233444555555555543345799999999999875
No 55
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.4e-17 Score=117.72 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=102.7
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
+...|+|.++-+..+ +++|.+.||||| +++.+++..+.+-||.+++++|++.++..++..+.-.
T Consensus 67 EREQGITIDVAYRyFsT~KRkFIiADTPGH-------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I 133 (431)
T COG2895 67 EREQGITIDVAYRYFSTEKRKFIIADTPGH-------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI 133 (431)
T ss_pred HHhcCceEEEEeeecccccceEEEecCCcH-------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHH
Confidence 445788888886433 678999999999 9999999999999999999999999998888888777
Q ss_pred HHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 92 MERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 92 l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
....+++ +++++|||||++ +...+++..++..+....+.....++|+||+.|.|+-
T Consensus 134 ~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 134 ASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 7777887 799999999994 5557788888888888888777899999999998865
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=3.8e-17 Score=123.86 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=101.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..||+|++...... +..+.++||||+.... .... ..+...+......+|++++|+|+
T Consensus 17 L~n~l~~~-~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~---~~~~~~~~~~~~~ad~il~vvd~ 90 (435)
T PRK00093 17 LFNRLTGK-RDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFE---KQIREQAELAIEEADVILFVVDG 90 (435)
T ss_pred HHHHHhCC-CceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHH---HHHHHHHHHHHHhCCEEEEEEEC
Confidence 68999998 46778999999987765433 5679999999995421 1111 22222233334567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+.+.+..+.++..++...++|+++|+||+|+.+... ...+... .+ ..+++++||.+|.|++++++++.+
T Consensus 91 ~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~------~~~~~~~-lg--~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 91 RAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA------DAYEFYS-LG--LGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh------hHHHHHh-cC--CCCCEEEEeeCCCCHHHHHHHHHh
Confidence 998888888888888888999999999999754221 1111111 22 235899999999999999999976
No 57
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=1.3e-16 Score=105.31 Aligned_cols=145 Identities=23% Similarity=0.260 Sum_probs=97.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+..++.+++++....... +..+.++||||++..... ..+. +...+......+|.+++++|+
T Consensus 19 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~---~~~~~~~~~~~~d~i~~v~d~ 92 (168)
T cd04163 19 LLNALVGQ-KISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGER---MVKAAWSALKDVDLVLFVVDA 92 (168)
T ss_pred HHHHHhCC-ceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHH---HHHHHHHHHHhCCEEEEEEEC
Confidence 57888888 56667777777664443222 346899999998543211 1111 222223334556999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCC-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
..+.......+.+.+...+.|+++|+||+|+.. ........+.+.. .. ...+++++|++++.|+++++.+|.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~--~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 93 SEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LG--PFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHh---cc--CCCceEEEEeccCCChHHHHHHHHhh
Confidence 987666666777777777899999999999973 3333333333222 11 13589999999999999999999865
No 58
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=3.9e-17 Score=126.72 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=96.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CC-ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|.+. ..+ ....+|+|+++..+.+ +. ++.++||||| ..+.....++...+|++++|+|
T Consensus 103 Ll~~l~~~-~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh-------------e~F~~~r~rga~~aDiaILVVd 167 (587)
T TIGR00487 103 LLDSIRKT-KVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGH-------------EAFTSMRARGAKVTDIVVLVVA 167 (587)
T ss_pred HHHHHHhC-Ccc-cccCCceeecceEEEEEECCCcEEEEEECCCC-------------cchhhHHHhhhccCCEEEEEEE
Confidence 56777766 333 3456788888776543 33 6999999999 4443344455677899999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH--HHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+.++...++.+.+..+...++|+++++||+|+.+.. .+...+.+.+. ....+....+++++||++|.|+++++++|.
T Consensus 168 a~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 168 ADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred CCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 998888888888887777899999999999986422 12222222211 111111225799999999999999999986
Q ss_pred H
Q 031293 155 K 155 (162)
Q Consensus 155 ~ 155 (162)
.
T Consensus 247 ~ 247 (587)
T TIGR00487 247 L 247 (587)
T ss_pred h
Confidence 4
No 59
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=8.6e-17 Score=121.54 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=98.7
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+..+|+|.+.....+ +.++.++||||| .+++..+..+...+|++++|+|+.+++..++.+++.
T Consensus 104 ~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-------------~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~ 170 (447)
T PLN03127 104 EEKARGITIATAHVEYETAKRHYAHVDCPGH-------------ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 170 (447)
T ss_pred hHhhcCceeeeeEEEEcCCCeEEEEEECCCc-------------cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH
Confidence 4556999998876655 446999999999 667888888878899999999999998888999999
Q ss_pred HHHHhCCc-eEEEEeccCCCCcHHHHHH-HHHHHHHHHhcC--CCCCCeEEeecC---CCCC-------HHHHHHHHHHh
Q 031293 91 LMERSQTK-YQVVLTKTDTVFPIDVARR-AMQIEESLKANN--SLVQPVMMVSSK---SGAG-------IRSLRTVLSKI 156 (162)
Q Consensus 91 ~l~~~~~~-~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~--~~~~~i~~~Sa~---~~~g-------~~~l~~~i~~~ 156 (162)
.+...++| +++++||+|+++..+..+. .+.+++.+...+ ....+++++||. +|.| +.+|++++.+.
T Consensus 171 ~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 99988999 5789999999864443332 235555554322 124688888876 4444 67888888775
Q ss_pred h
Q 031293 157 A 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 251 l 251 (447)
T PLN03127 251 I 251 (447)
T ss_pred C
Confidence 4
No 60
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.74 E-value=3.9e-17 Score=127.17 Aligned_cols=142 Identities=23% Similarity=0.267 Sum_probs=95.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...+++.||+|.+..... . +.++.++||||+...... +.. +...+.++.. ..+|++++|+|+
T Consensus 10 L~N~Ltg~--~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~-s~~---e~v~~~~l~~-~~aDvvI~VvDa 82 (591)
T TIGR00437 10 LFNALTGA--NQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF-SLE---EEVARDYLLN-EKPDLVVNVVDA 82 (591)
T ss_pred HHHHHhCC--CCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCcc-chH---HHHHHHHHhh-cCCCEEEEEecC
Confidence 68999998 357899999998776432 2 456999999998543211 111 2233444332 356999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.. .........+.+.++|+++|+||+|+.++.......+.+.+. .+ .+++++||++|+|++++++++.+..
T Consensus 83 t~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~---lg---~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 83 SNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER---LG---VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred Ccc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH---cC---CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 763 223344445556789999999999986433222222233222 22 4899999999999999999998754
No 61
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=5.6e-17 Score=129.14 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=98.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccC---HHHHHHHHHHHHHHHhcCcccceeEEE
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAK---EEVKDAWEELVKEYVSTRVSLKRVCLL 74 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vi~v 74 (162)
|+|+|+|. ..++++.||+|.+...... +.++.++||||+...... .+.. +.....++. ...+|++++|
T Consensus 19 LfN~Ltg~--~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~-~~~aD~vI~V 92 (772)
T PRK09554 19 LFNQLTGA--RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYIL-SGDADLLINV 92 (772)
T ss_pred HHHHHhCC--CCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---HHHHHHHHh-ccCCCEEEEE
Confidence 68999998 3579999999987664322 456999999998543211 1111 223344433 2356999999
Q ss_pred eecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 75 IDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 75 id~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+|+.... ....+...+.+.++|+++|+||+|+.++.......+.+++.+ + .|++++||.+|+|++++++.+.
T Consensus 93 vDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L---G---~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 93 VDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARL---G---CPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred ecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHh---C---CCEEEEEeecCCCHHHHHHHHH
Confidence 9997632 233444566677999999999999875444333333443333 2 4899999999999999999997
Q ss_pred Hhh
Q 031293 155 KIA 157 (162)
Q Consensus 155 ~~~ 157 (162)
+..
T Consensus 165 ~~~ 167 (772)
T PRK09554 165 RHQ 167 (772)
T ss_pred Hhh
Confidence 754
No 62
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.74 E-value=2.9e-17 Score=124.43 Aligned_cols=137 Identities=25% Similarity=0.293 Sum_probs=95.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++.....+ +.++.++||||+.... ...+. ..++........+|++++|+|+
T Consensus 231 Lln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~---~~ie~--~gi~~~~~~~~~aD~il~VvD~ 304 (449)
T PRK05291 231 LLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD---DEVEK--IGIERSREAIEEADLVLLVLDA 304 (449)
T ss_pred HHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc---cHHHH--HHHHHHHHHHHhCCEEEEEecC
Confidence 68999998 56788999999987764332 5579999999985321 11111 1123333445567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.+..+...+.. ..++|+++|+||+|+.+..... .. ...+++++||++|.|+++++++|.+.+
T Consensus 305 s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~----------~~---~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 305 SEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE----------EE---NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred CCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh----------hc---cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 87665444433332 3478999999999997543221 11 124899999999999999999998765
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 370 ~ 370 (449)
T PRK05291 370 F 370 (449)
T ss_pred h
Confidence 3
No 63
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=8.6e-17 Score=120.42 Aligned_cols=129 Identities=20% Similarity=0.250 Sum_probs=100.4
Q ss_pred CCCCcceEEEEEEe--C----CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH
Q 031293 16 DKPGLTQTINFFKL--G----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89 (162)
Q Consensus 16 ~~~g~t~~~~~~~~--~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~ 89 (162)
.--|.|+.+.-|.. + ..++|+||||| +.|...-.++..-+|++++|+++.+++.+++.+-.
T Consensus 34 EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI 100 (509)
T COG0532 34 EAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI 100 (509)
T ss_pred cCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH
Confidence 34568998887654 2 46999999999 77776667788889999999999999999999999
Q ss_pred HHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH--HHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 90 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 90 ~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.++..+.|+++++||+|.++.... .....+.+. ..+.+.....++++||++|+|+++|+..+..+.+
T Consensus 101 ~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 101 NHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred HHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999843322 222222221 1122334478999999999999999999876654
No 64
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.74 E-value=3.4e-17 Score=130.01 Aligned_cols=139 Identities=23% Similarity=0.287 Sum_probs=98.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+++|.+. ... .+..+|+|.++..+.+ +.++++|||||| ..+.....++...+|++++|+|+
T Consensus 306 Ll~~Lr~~-~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh-------------e~F~~m~~rga~~aDiaILVVdA 370 (787)
T PRK05306 306 LLDAIRKT-NVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH-------------EAFTAMRARGAQVTDIVVLVVAA 370 (787)
T ss_pred HHHHHHhC-Ccc-ccccCceeeeccEEEEEECCEEEEEEECCCC-------------ccchhHHHhhhhhCCEEEEEEEC
Confidence 56777665 232 3556788887776544 456999999999 33444444556677999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH---HHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES---LKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
.++....+.+.+..+...++|+++++||+|+.... .......+.+. ....+ ...+++++||++|.|+++|+++|.
T Consensus 371 ddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~~~~~~e~~g-~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 371 DDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSEYGLVPEEWG-GDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred CCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHHhcccHHHhC-CCceEEEEeCCCCCCchHHHHhhh
Confidence 99888888888888888899999999999996422 11222222211 11111 236899999999999999999987
Q ss_pred Hh
Q 031293 155 KI 156 (162)
Q Consensus 155 ~~ 156 (162)
..
T Consensus 449 ~~ 450 (787)
T PRK05306 449 LQ 450 (787)
T ss_pred hh
Confidence 53
No 65
>CHL00071 tufA elongation factor Tu
Probab=99.74 E-value=1.1e-16 Score=120.26 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=92.2
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+..+|+|.+.....+ +.++.++||||| ..++..+..+...+|++++|+|+.+++..++.+++.
T Consensus 55 ~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~ 121 (409)
T CHL00071 55 EEKARGITINTAHVEYETENRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL 121 (409)
T ss_pred hhhcCCEeEEccEEEEccCCeEEEEEECCCh-------------HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence 3445889887765444 446899999999 678888888888899999999999999888999999
Q ss_pred HHHHhCCc-eEEEEeccCCCCcHHH-HHHHHHHHHHHHhcCC--CCCCeEEeecCCCC
Q 031293 91 LMERSQTK-YQVVLTKTDTVFPIDV-ARRAMQIEESLKANNS--LVQPVMMVSSKSGA 144 (162)
Q Consensus 91 ~l~~~~~~-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~ 144 (162)
.+...++| +++++||+|+++..+. +...+.+.+.+...+. ...+++++||.+|.
T Consensus 122 ~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 122 LAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 88888999 7789999999864443 3334566666665432 23689999999886
No 66
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=4.3e-17 Score=128.47 Aligned_cols=141 Identities=21% Similarity=0.314 Sum_probs=97.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-------CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEE
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCL 73 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 73 (162)
|+++|.+.. .+ .+..+|+|+++..+.. +.+++++||||| ..+.....++...+|++++
T Consensus 260 Lld~L~~~~-~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaIL 324 (742)
T CHL00189 260 LLDKIRKTQ-IA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAIL 324 (742)
T ss_pred HHHHHHhcc-Cc-cccCCccccccceEEEEEEecCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEE
Confidence 467776652 22 3455778876665432 256999999999 4444444455567799999
Q ss_pred EeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH--HHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 74 LIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES--LKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 74 vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+|+..+...++.+.+..+...++|+++++||+|+.... .....+.+... +........+++++||++|.|+++|++
T Consensus 325 VVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle 403 (742)
T CHL00189 325 IIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLE 403 (742)
T ss_pred EEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHH
Confidence 999998888888888888887899999999999997432 22222222211 111111236899999999999999999
Q ss_pred HHHHhh
Q 031293 152 VLSKIA 157 (162)
Q Consensus 152 ~i~~~~ 157 (162)
+|....
T Consensus 404 ~I~~l~ 409 (742)
T CHL00189 404 TILLLA 409 (742)
T ss_pred hhhhhh
Confidence 997654
No 67
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=1.1e-16 Score=119.78 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=97.6
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+..+|+|.+.....+ +.++.++||||| ++++..++.+...+|++++|+|+.+++..++.+++.
T Consensus 55 ~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~ 121 (394)
T TIGR00485 55 EEKARGITINTAHVEYETENRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHIL 121 (394)
T ss_pred HHHhcCcceeeEEEEEcCCCEEEEEEECCch-------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence 3446899988776555 445999999999 778888888888999999999999988888888888
Q ss_pred HHHHhCCceE-EEEeccCCCCcHHH-HHHHHHHHHHHHhcCCC--CCCeEEeecCCCC--------CHHHHHHHHHH
Q 031293 91 LMERSQTKYQ-VVLTKTDTVFPIDV-ARRAMQIEESLKANNSL--VQPVMMVSSKSGA--------GIRSLRTVLSK 155 (162)
Q Consensus 91 ~l~~~~~~~i-vv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~--------g~~~l~~~i~~ 155 (162)
.+...++|.+ +++||+|+.+..+. +...+.+++.+...+.. ..+++++||++|. ++..+++++.+
T Consensus 122 ~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 122 LARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 8888899865 68999999864432 33334566666655432 2689999999874 34556665554
No 68
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=7.9e-17 Score=121.85 Aligned_cols=122 Identities=17% Similarity=0.223 Sum_probs=97.5
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------Cc
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KP 83 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~ 83 (162)
.+...|+|.++.++.+ +..++++||||| .+++.+++.+...+|.+++|+|+.++. ..
T Consensus 65 ~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~ 131 (446)
T PTZ00141 65 AERERGITIDIALWKFETPKYYFTIIDAPGH-------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDG 131 (446)
T ss_pred HHHhcCEeEEeeeEEEccCCeEEEEEECCCh-------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCc
Confidence 3456788888877655 446899999999 888999999999999999999999876 36
Q ss_pred cHHHHHHHHHHhCCc-eEEEEeccCCC----CcHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHHH
Q 031293 84 RDHELISLMERSQTK-YQVVLTKTDTV----FPIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 84 ~~~~~~~~l~~~~~~-~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~~ 148 (162)
++.+++..+...++| +|+++||+|.. ++...++..+.+++.+...+. ...+++++||.+|.|+.+
T Consensus 132 qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 132 QTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 788888888888988 67999999943 234566777777777765443 247899999999999864
No 69
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=9.6e-17 Score=112.77 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=108.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|.|.+.|+ .++.+|.++.||+.-...-+ ..++.+.||||.-..... ........++.++..+...+|+++++.|+
T Consensus 88 LtN~mig~-kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq~~~~a~q~AD~vvVv~Da 165 (379)
T KOG1423|consen 88 LTNQMIGQ-KVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQNPRDAAQNADCVVVVVDA 165 (379)
T ss_pred hhhHhhCC-ccccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhhCHHHHHhhCCEEEEEEec
Confidence 57999999 78999999999996665333 567999999998322111 11122234556677777889999999999
Q ss_pred CCCCCccHHHHHHHHHHh-CCceEEEEeccCCCCcHHHH-HH------------HHHHHHHHHhc-----------CCCC
Q 031293 78 KWGVKPRDHELISLMERS-QTKYQVVLTKTDTVFPIDVA-RR------------AMQIEESLKAN-----------NSLV 132 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~-~~~~ivv~nK~Dl~~~~~~~-~~------------~~~~~~~~~~~-----------~~~~ 132 (162)
...-.......+..+.+. ++|-++|+||+|...+...- .. .-.+++.+... +..+
T Consensus 166 s~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshf 245 (379)
T KOG1423|consen 166 SATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHF 245 (379)
T ss_pred cCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccc
Confidence 876556667777777765 69999999999987544321 00 11122222111 1223
Q ss_pred CCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 133 QPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 133 ~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..+|++||++|+|++++.++|...++
T Consensus 246 e~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 246 ERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred eeEEEEecccccCHHHHHHHHHhcCC
Confidence 46999999999999999999988764
No 70
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.1e-17 Score=114.85 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=102.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
+++.|+|.||| +-++..++.+....|.+++|+.++++. ++++.+++..|.-.++. +++|.||+|+
T Consensus 86 R~VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 86 RRVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred EEEEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 36899999999 888999999999999999999999864 67788888888777755 8999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
++++...+..+.+.++++.......|++++||..+.|++.|+++|.+.++
T Consensus 153 V~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 153 VSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred ecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 99988888888999999888777789999999999999999999998664
No 71
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=7.9e-17 Score=117.31 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=98.1
Q ss_pred eccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CC
Q 031293 13 RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VK 82 (162)
Q Consensus 13 ~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~ 82 (162)
+.+...|.|.+.....+ ...++++|+||| +.++++++.+.+++|+.++|+|++.+ ..
T Consensus 64 keERerGvTi~~~~~~fet~k~~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~ 130 (428)
T COG5256 64 KEERERGVTIDVAHSKFETDKYNFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVG 130 (428)
T ss_pred hhHHhcceEEEEEEEEeecCCceEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccC
Confidence 45667888887776544 456999999999 99999999999999999999999886 67
Q ss_pred ccHHHHHHHHHHhCCc-eEEEEeccCCC--CcHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293 83 PRDHELISLMERSQTK-YQVVLTKTDTV--FPIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 83 ~~~~~~~~~l~~~~~~-~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~ 148 (162)
.++.+++-..+..++. +|+++||+|++ ++...++..+.+..+++..+.. ..+++|+|+..|+|+.+
T Consensus 131 gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 131 GQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 7888887777777766 89999999999 4555666666666655544433 47899999999998764
No 72
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=2.4e-16 Score=117.89 Aligned_cols=130 Identities=21% Similarity=0.259 Sum_probs=101.1
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
+..+|+|.+.....+ +.++.++||||| ..++..+..+...+|++++|+|+..++...+.+++.+
T Consensus 56 E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-------------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~ 122 (396)
T PRK00049 56 EKARGITINTAHVEYETEKRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122 (396)
T ss_pred HHhcCeEEeeeEEEEcCCCeEEEEEECCCH-------------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHH
Confidence 347899988776555 456999999999 7788888888889999999999999988888899998
Q ss_pred HHHhCCceE-EEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCCC----------CHHHHHHHHHHhh
Q 031293 92 MERSQTKYQ-VVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSGA----------GIRSLRTVLSKIA 157 (162)
Q Consensus 92 l~~~~~~~i-vv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~----------g~~~l~~~i~~~~ 157 (162)
+...++|.+ +++||+|+.+..+ .+...+.+++.+...+. ...+++++||++|. |+..|+++|.+.+
T Consensus 123 ~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 123 ARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 888899975 6899999985333 23334456666654332 34689999999874 5778888888754
No 73
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.73 E-value=1.5e-16 Score=106.80 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=74.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~ 111 (162)
.+.++||||+. .+...+..++ ..+|++++|+|+..+....+...+..+...++|+++|+||+|+.+.
T Consensus 68 ~~~l~Dt~G~~----------~~~~~~~~~~---~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 68 LLNLIDTPGHV----------DFSYEVSRSL---AACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSA 134 (179)
T ss_pred EEEEEECCCCh----------hhHHHHHHHH---HhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcC
Confidence 47899999992 2233333343 4569999999998876555555555555568999999999998643
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.. ....+.+.+.++ ....+++++||++|.|+++++++|.+.+
T Consensus 135 ~~-~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 135 DP-ERVKQQIEDVLG---LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CH-HHHHHHHHHHhC---CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 21 222233333322 2223689999999999999999998765
No 74
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=8.5e-17 Score=107.58 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=89.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++.. . .++..+++|...... .. +.++.++||||+....... +.+...+......+|++++|+|
T Consensus 12 ll~~l~~~~-~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d 83 (176)
T cd01881 12 LLNALTNAK-P-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG------RGLGNQFLAHIRRADAILHVVD 83 (176)
T ss_pred HHHHHhcCC-c-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC------CCccHHHHHHHhccCEEEEEEe
Confidence 578999883 3 677888888765542 22 4668999999984321100 1112233333445799999999
Q ss_pred cCCCC-----Cc-cH-HHHHHHHH----------HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293 77 TKWGV-----KP-RD-HELISLME----------RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 139 (162)
Q Consensus 77 ~~~~~-----~~-~~-~~~~~~l~----------~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 139 (162)
+.... .. .+ ..+...+. ..++|+++|+||+|+.+........ ...... . ...+++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~~~~-~--~~~~~~~~S 158 (176)
T cd01881 84 ASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRELAL-E--EGAEVVPIS 158 (176)
T ss_pred ccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHHHhc-C--CCCCEEEEe
Confidence 97652 11 11 11222222 1368999999999998655443321 111111 1 235899999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 031293 140 SKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 140 a~~~~g~~~l~~~i~~~ 156 (162)
|+++.|++++++++...
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998754
No 75
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=3.6e-16 Score=119.14 Aligned_cols=123 Identities=18% Similarity=0.165 Sum_probs=90.6
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+...|.|.+..+..+ +.++.++||||| ..+...+..+...+|++++|+|+.+++..++.+++.
T Consensus 87 eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh-------------~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~ 153 (474)
T PRK05124 87 AEREQGITIDVAYRYFSTEKRKFIIADTPGH-------------EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF 153 (474)
T ss_pred HHhhcCCCeEeeEEEeccCCcEEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH
Confidence 3445777877775444 457999999999 677777777788899999999999998887777777
Q ss_pred HHHHhCC-ceEEEEeccCCCCcH--HHHHHHHHHHHHHHhcC-CCCCCeEEeecCCCCCHHHH
Q 031293 91 LMERSQT-KYQVVLTKTDTVFPI--DVARRAMQIEESLKANN-SLVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 91 ~l~~~~~-~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~-~~~~~i~~~Sa~~~~g~~~l 149 (162)
.+...++ |+++++||+|+.+.. ......+.+...+...+ ....+++++||++|.|++++
T Consensus 154 l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 154 IATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 7766664 588999999998422 23444445544444332 23468999999999998764
No 76
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=4.6e-16 Score=120.68 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=77.3
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 112 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~ 112 (162)
+.++||||| +.+........+.+|++++|+|+.++....+.+.+..+...++|+++++||+|+....
T Consensus 71 l~~iDTpG~-------------e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~ 137 (590)
T TIGR00491 71 LLFIDTPGH-------------EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGW 137 (590)
T ss_pred EEEEECCCc-------------HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchh
Confidence 889999999 3332223334456799999999998888888888888887899999999999997421
Q ss_pred H--------------HHHHHHH-------HHHHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 113 D--------------VARRAMQ-------IEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 113 ~--------------~~~~~~~-------~~~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
. .....+. +...+... .....+++++||++|+|+++|..+|....
T Consensus 138 ~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 138 RSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 0000000 11111211 11236999999999999999999987544
No 77
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=1.4e-15 Score=99.52 Aligned_cols=147 Identities=24% Similarity=0.242 Sum_probs=97.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. .....+..+++|........ ...+.++||||++........ .......+ ...+|.+++++|
T Consensus 12 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~---~~~~d~il~v~~ 84 (163)
T cd00880 12 LLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRV---LERADLILFVVD 84 (163)
T ss_pred HHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHH---HHhCCEEEEEEe
Confidence 47888887 44557777877765554333 456999999999665321110 01122222 244699999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+..+.......+.......+.|+++|+||+|+..........+... ... ......+++++||.++.|+++++.++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 85 ADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRL-LIL-LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHH-hhc-ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 9987666555545555566899999999999986654443221111 111 12234699999999999999999999865
No 78
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=8.8e-17 Score=106.78 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHH---HhCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LME---RSQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~---~~~~~~ivv~n 104 (162)
+.++.++||||+. .+......+ .+.++++++|+|+..+.+... ..++. .+. ..++|+++++|
T Consensus 49 ~~~~~l~Dt~G~~----------~~~~~~~~~---~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 49 NARLKFWDLGGQE----------SLRSLWDKY---YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred CEEEEEEECCCCh----------hhHHHHHHH---hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 4568999999982 122233333 345699999999876421111 11222 222 23689999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+|+.......+..+.+.......+....+++++||++|.|+++++.+|.+
T Consensus 116 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 116 KQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 999875433333323332222222223358999999999999999999864
No 79
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.2e-16 Score=119.56 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=97.0
Q ss_pred ccCCCCcceEEEEEEe------CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH
Q 031293 14 TSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 87 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~ 87 (162)
++...|+|.......+ +..+.++||||| .+|-.+..+....|+++++|+||.+++..++..
T Consensus 102 vERERGITIkaQtasify~~~~~ylLNLIDTPGH-------------vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~a 168 (650)
T KOG0462|consen 102 VERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-------------VDFSGEVSRSLAACDGALLVVDASQGVQAQTVA 168 (650)
T ss_pred hhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-------------ccccceehehhhhcCceEEEEEcCcCchHHHHH
Confidence 5667888875443222 255889999999 445555555566679999999999999888877
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
-+-..-+.+..+|.|+||+|+... +.++....+.+.+.... .+++.+||++|.|+++++++|.+.++
T Consensus 169 nf~lAfe~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~~~~---~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 169 NFYLAFEAGLAIIPVLNKIDLPSA-DPERVENQLFELFDIPP---AEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HHHHHHHcCCeEEEeeeccCCCCC-CHHHHHHHHHHHhcCCc---cceEEEEeccCccHHHHHHHHHhhCC
Confidence 666666678999999999999843 33444455655565444 49999999999999999999998764
No 80
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.70 E-value=7.5e-16 Score=116.41 Aligned_cols=122 Identities=18% Similarity=0.290 Sum_probs=89.8
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC---CCccHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG---VKPRDHE 87 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~---~~~~~~~ 87 (162)
.+..+|+|.+..+..+ +..+.++||||| +.+++.+..+...+|++++|+|+..+ ......+
T Consensus 65 ~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~ 131 (426)
T TIGR00483 65 EERERGVTIDVAHWKFETDKYEVTIVDCPGH-------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTRE 131 (426)
T ss_pred HHhhcCceEEEEEEEEccCCeEEEEEECCCH-------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHH
Confidence 3456788988887555 446999999999 67778888777889999999999887 4455555
Q ss_pred HHHHHHHhCC-ceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCCHHH
Q 031293 88 LISLMERSQT-KYQVVLTKTDTVF--PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 88 ~~~~l~~~~~-~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g~~~ 148 (162)
++..+...+. |+++|+||+|+.+ +.......+.+++.+...+. ...+++++||++|.|+++
T Consensus 132 ~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 132 HAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 5555555554 5899999999974 33344455566666655442 236899999999999985
No 81
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.2e-15 Score=116.07 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=92.7
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+..+|+|.+.....+ +.++.++||||| ++++.+++.+...+|++++|+|+.++...++.+++.
T Consensus 124 ~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-------------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~ 190 (478)
T PLN03126 124 EERARGITINTATVEYETENRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 190 (478)
T ss_pred hHHhCCeeEEEEEEEEecCCcEEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence 3556788877665433 557999999999 888889989889999999999999999888889999
Q ss_pred HHHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCCC
Q 031293 91 LMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSGA 144 (162)
Q Consensus 91 ~l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~ 144 (162)
.+...++| +++++||+|+.+..+ .+...+.+++.+...+. ...+++++||.+|.
T Consensus 191 ~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 191 LAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 88888999 788999999986443 33344466666665432 34789999998874
No 82
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=6.8e-16 Score=121.60 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=88.9
Q ss_pred CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
..|+|.+..+..+ +.++.++||||| +.+.+.+..+...+|++++|+|+..++..++.+++..+.
T Consensus 87 ~rg~Tid~~~~~~~~~~~~~~liDtPG~-------------~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~ 153 (632)
T PRK05506 87 EQGITIDVAYRYFATPKRKFIVADTPGH-------------EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIAS 153 (632)
T ss_pred hCCcCceeeeeEEccCCceEEEEECCCh-------------HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHH
Confidence 4666766665433 456999999999 667777777788899999999999988888878877777
Q ss_pred HhCC-ceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 94 RSQT-KYQVVLTKTDTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 94 ~~~~-~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
..++ ++++++||+|+.+ +.........+.+.+...+....+++++||++|.|+++
T Consensus 154 ~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 154 LLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 6764 5888999999974 33344444555555544444446899999999999873
No 83
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=8.6e-16 Score=116.00 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=92.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++.....+ +..+.++||||+.... ...+.+ .+..+....+.+|++++|+|+
T Consensus 219 LiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~---~~ie~~--gi~~~~~~~~~aD~il~V~D~ 292 (442)
T TIGR00450 219 LLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA---DFVERL--GIEKSFKAIKQADLVIYVLDA 292 (442)
T ss_pred HHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch---hHHHHH--HHHHHHHHHhhCCEEEEEEEC
Confidence 68999998 56789999999998765433 4568999999985431 111111 122333444567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.+..+. ++..+...++|+++|+||+|+... .. +.+ ....+ .+++.+||++ .|++++++.+.+.+
T Consensus 293 s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~~---~~~~~---~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 293 SQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL----EFF---VSSKV---LNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred CCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch----hhh---hhhcC---CceEEEEEec-CCHHHHHHHHHHHH
Confidence 876654444 445555557899999999999643 11 111 11121 3788999998 57888777776654
No 84
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.2e-16 Score=115.05 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=100.2
Q ss_pred cCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 15 SDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
+..-|+|+.+.-|.. |..++|.||||| ..|...--++....|++++|+.+.+++.+++.+..+
T Consensus 181 ~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-------------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk 247 (683)
T KOG1145|consen 181 GEAGGITQHIGAFTVTLPSGKSITFLDTPGH-------------AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK 247 (683)
T ss_pred hhcCCccceeceEEEecCCCCEEEEecCCcH-------------HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH
Confidence 445689999998766 677999999999 666666667888899999999999999999999999
Q ss_pred HHHHhCCceEEEEeccCCCCcHHHHHHHHHHHH---HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE---SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 91 ~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
..+..++|+++++||+|...... +..+..+.+ .+...+ ..++++++||++|+|++.|-+++.-++
T Consensus 248 hAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~G-GdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 248 HAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLG-GDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcC-CceeEEEeecccCCChHHHHHHHHHHH
Confidence 99989999999999999874332 222222221 122233 237999999999999999999886544
No 85
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.68 E-value=1.1e-15 Score=115.61 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=94.4
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------Cc
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KP 83 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~ 83 (162)
.+...|+|.+..++.+ +..++++||||| ++|+.++..+.+.+|++++|+|+..+. ..
T Consensus 65 ~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~ 131 (447)
T PLN00043 65 AERERGITIDIALWKFETTKYYCTVIDAPGH-------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131 (447)
T ss_pred hHHhcCceEEEEEEEecCCCEEEEEEECCCH-------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence 4556788888776555 456999999999 889999999999999999999998752 24
Q ss_pred cHHHHHHHHHHhCCc-eEEEEeccCCCC----cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHH
Q 031293 84 RDHELISLMERSQTK-YQVVLTKTDTVF----PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIR 147 (162)
Q Consensus 84 ~~~~~~~~l~~~~~~-~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~ 147 (162)
+..+++..++..++| +++++||+|+.+ +....+..+.++..+...+.. ..+++++||++|.|+.
T Consensus 132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 667777778888986 688999999863 233456667777777765532 3689999999999985
No 86
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.68 E-value=1.8e-15 Score=122.90 Aligned_cols=143 Identities=22% Similarity=0.323 Sum_probs=97.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---------------------CceEEEcCCCCcccccCHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVK 59 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~ 59 (162)
|+.+|.+. +++ .+..-|.|+++..+.+. +.+.++||||| +.+..
T Consensus 477 LLD~iR~t-~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh-------------e~F~~ 541 (1049)
T PRK14845 477 LLDKIRKT-RVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH-------------EAFTS 541 (1049)
T ss_pred HHHHHhCC-Ccc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc-------------HHHHH
Confidence 34556666 332 34456789988875441 12799999999 44433
Q ss_pred HHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--------------HHHHHHHHH---
Q 031293 60 EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--------------VARRAMQIE--- 122 (162)
Q Consensus 60 ~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--------------~~~~~~~~~--- 122 (162)
....+...+|++++|+|+.+++..++.+.+..+...++|+++|+||+|+..... .+...+.+.
T Consensus 542 lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l 621 (1049)
T PRK14845 542 LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKL 621 (1049)
T ss_pred HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 333455668999999999998888888888888888999999999999963210 011111111
Q ss_pred ----HHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 123 ----ESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 123 ----~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..+... .....+++++||++|+|+++|+.+|..+.+
T Consensus 622 ~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 622 YELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 111211 123479999999999999999999875543
No 87
>PRK11058 GTPase HflX; Provisional
Probab=99.68 E-value=1.3e-15 Score=114.40 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=91.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE--e-C-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ... +++.||+|.+..... + + ..+.++||||+-.. .+.+. ++. +...+.....+|++++|+|
T Consensus 213 LlN~Lt~~-~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~l---ve~-f~~tl~~~~~ADlIL~VvD 285 (426)
T PRK11058 213 LFNRITEA-RVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDL---VAA-FKATLQETRQATLLLHVVD 285 (426)
T ss_pred HHHHHhCC-cee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHH---HHH-HHHHHHHhhcCCEEEEEEe
Confidence 68999998 334 788999998766432 2 2 36899999998221 12222 222 2233445567899999999
Q ss_pred cCCCCCccHH----HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRDH----ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~~----~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
++++...... .++..+...++|+++|+||+|+.+.... .... ...+. ..++++||++|.|+++|+++
T Consensus 286 aS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~~--~~~v~ISAktG~GIdeL~e~ 356 (426)
T PRK11058 286 AADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEENK--PIRVWLSAQTGAGIPLLFQA 356 (426)
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcCC--CceEEEeCCCCCCHHHHHHH
Confidence 9876433332 2233333346899999999999753211 1111 11111 23588999999999999999
Q ss_pred HHHhh
Q 031293 153 LSKIA 157 (162)
Q Consensus 153 i~~~~ 157 (162)
|.+.+
T Consensus 357 I~~~l 361 (426)
T PRK11058 357 LTERL 361 (426)
T ss_pred HHHHh
Confidence 98766
No 88
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.68 E-value=1.5e-15 Score=103.43 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293 18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER 94 (162)
Q Consensus 18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~ 94 (162)
.|+|.......+ +.++.++||||+ +.+......+ .+.+|++++|+|+.++.......++..+..
T Consensus 49 ~g~t~~~~~~~~~~~~~~~~l~DtpG~----------~~~~~~~~~~---~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~ 115 (194)
T cd01891 49 RGITILAKNTAVTYKDTKINIVDTPGH----------ADFGGEVERV---LSMVDGVLLLVDASEGPMPQTRFVLKKALE 115 (194)
T ss_pred cccccccceeEEEECCEEEEEEECCCc----------HHHHHHHHHH---HHhcCEEEEEEECCCCccHHHHHHHHHHHH
Confidence 555543332222 446899999999 2223333333 345699999999987654555555666666
Q ss_pred hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHH
Q 031293 95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~ 147 (162)
.++|+++|+||+|+..... ....+.+.+.+... .....+++++||++|.|+.
T Consensus 116 ~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 116 LGLKPIVVINKIDRPDARP-EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred cCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 6899999999999974322 22233344433221 1113589999999997764
No 89
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=2.7e-15 Score=116.73 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=78.4
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 112 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~ 112 (162)
+.++||||+ +.+.....++...+|++++|+|+..++...+.+.+..+...++|+++++||+|+....
T Consensus 73 i~~iDTPG~-------------e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~ 139 (586)
T PRK04004 73 LLFIDTPGH-------------EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGW 139 (586)
T ss_pred EEEEECCCh-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhh
Confidence 789999999 4443333344566799999999998888888888888887899999999999985211
Q ss_pred H---------------------HHHHHHHHHHHHHhcC------------CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 113 D---------------------VARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 113 ~---------------------~~~~~~~~~~~~~~~~------------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
. ..+....+...+...+ ....+++++||++|.|+++|++.+....
T Consensus 140 ~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 140 KSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 0111111222222222 1236899999999999999998886543
No 90
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=1.6e-15 Score=118.31 Aligned_cols=111 Identities=22% Similarity=0.249 Sum_probs=79.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.+|||||+ ..+.....+..+.+|++++|+|+..+....+...+..+...++|+++|+||+|+..
T Consensus 74 ~~lnLiDTPGh-------------~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 74 YILNLIDTPGH-------------VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence 45899999999 33433333444567999999999988877776666666667899999999999864
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.. .....+.+.+.++ ....+++++||++|.|+++++++|.+.++
T Consensus 141 a~-~~~v~~ei~~~lg---~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 141 AD-PERVKQEIEDVIG---IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred cc-HHHHHHHHHHHhC---CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 32 2223334443332 22236899999999999999999987654
No 91
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.67 E-value=6e-16 Score=102.07 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=78.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++. ......+..|.+.......-+..+.++||||.. .+......++ ..+|++++|+|+.++
T Consensus 15 l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~---~~~~~iv~v~D~~~~ 80 (160)
T cd04156 15 LLYKLKHA-ELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCYL---ENTDGLVYVVDSSDE 80 (160)
T ss_pred HHHHHhcC-CcccccCccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHHh---ccCCEEEEEEECCcH
Confidence 46778777 333334444433221111113458999999981 1223333333 345999999999865
Q ss_pred C--CccHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-CCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 81 V--KPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 81 ~--~~~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
. .....++...+.. .+.|+++|+||+|+.......+....+. .... .....+++++||++|+|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK--LKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC--CcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 3 1122222233322 3689999999999864221222111111 0111 11124689999999999999999986
Q ss_pred H
Q 031293 155 K 155 (162)
Q Consensus 155 ~ 155 (162)
+
T Consensus 159 ~ 159 (160)
T cd04156 159 S 159 (160)
T ss_pred c
Confidence 4
No 92
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.66 E-value=3.6e-15 Score=102.31 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=85.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---C-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---G-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. . ..++..++.|.+...... + ..+.++||||+..... ....+.+. ..+.....+|++++|+|
T Consensus 57 Ll~~l~~~-~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~----~~~~~~~~~d~ii~v~D 129 (204)
T cd01878 57 LFNALTGA-D-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFR----STLEEVAEADLLLHVVD 129 (204)
T ss_pred HHHHHhcc-h-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHH----HHHHHHhcCCeEEEEEE
Confidence 57888887 2 334555665654433222 2 2699999999843211 11111121 22222345699999999
Q ss_pred cCCCCCccHH-HHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
++.+....+. .+..++.. .++|+++|+||+|+....... ..... ...+++++||+++.|+++++.+
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-------~~~~~---~~~~~~~~Sa~~~~gi~~l~~~ 199 (204)
T cd01878 130 ASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-------ERLEA---GRPDAVFISAKTGEGLDELLEA 199 (204)
T ss_pred CCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-------HHhhc---CCCceEEEEcCCCCCHHHHHHH
Confidence 9876544332 23344433 358999999999997654332 11221 2258999999999999999999
Q ss_pred HHHh
Q 031293 153 LSKI 156 (162)
Q Consensus 153 i~~~ 156 (162)
|...
T Consensus 200 L~~~ 203 (204)
T cd01878 200 IEEL 203 (204)
T ss_pred HHhh
Confidence 8764
No 93
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.65 E-value=1.3e-15 Score=101.84 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++. ......++.|.... .... +.++.++||||+ +.+..+...++ +.+|++++|+|+..
T Consensus 30 L~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~----------~~~~~~~~~~~---~~~d~~i~v~d~~~ 93 (173)
T cd04154 30 ILKKLLGE-DIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQ----------KTLRPYWRNYF---ESTDALIWVVDSSD 93 (173)
T ss_pred HHHHHccC-CCCCcCCccccceE--EEEECCEEEEEEECCCC----------HHHHHHHHHHh---CCCCEEEEEEECCC
Confidence 46777776 34444444443221 1222 445899999998 22233444444 35699999999876
Q ss_pred CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHH
Q 031293 80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+- .....++...+. ..++|+++|+||+|+......+ .+.+.+... .....+++++||++|.|+++++++
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 94 RLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEE----EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHH----HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 42 111112222222 2468999999999997533222 222223221 122358999999999999999999
Q ss_pred HHH
Q 031293 153 LSK 155 (162)
Q Consensus 153 i~~ 155 (162)
+.+
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 853
No 94
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.65 E-value=3.5e-15 Score=116.16 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=93.5
Q ss_pred CCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293 16 DKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 92 (162)
Q Consensus 16 ~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l 92 (162)
...|+|...... .+ +.++.++||||| .++..+..+..+.+|++++|+|+.++...++..++..+
T Consensus 46 rerGiTI~~~~~~v~~~~~kinlIDTPGh-------------~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a 112 (594)
T TIGR01394 46 RERGITILAKNTAIRYNGTKINIVDTPGH-------------ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKA 112 (594)
T ss_pred HhCCccEEeeeEEEEECCEEEEEEECCCH-------------HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHH
Confidence 356777654432 22 567999999999 55555555556677999999999988888888888888
Q ss_pred HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCC----------CHHHHHHHHHHhhh
Q 031293 93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGA----------GIRSLRTVLSKIAR 158 (162)
Q Consensus 93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~----------g~~~l~~~i~~~~~ 158 (162)
...++|+++|+||+|+.... ..+..+.+.+.+...+. ..+|++++||++|. |++.+++.|.+.++
T Consensus 113 ~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 113 LELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 88899999999999986432 22333444444432211 13589999999995 79999999887664
No 95
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.65 E-value=3.3e-15 Score=116.49 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=85.9
Q ss_pred CCCCcceEEEEEEe-----C---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH
Q 031293 16 DKPGLTQTINFFKL-----G---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 87 (162)
Q Consensus 16 ~~~g~t~~~~~~~~-----~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~ 87 (162)
...|.|.......+ + .++.+|||||+ .++........+.+|++++|+|+.++....+..
T Consensus 47 rerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~-------------~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~ 113 (595)
T TIGR01393 47 RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-------------VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLA 113 (595)
T ss_pred HhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc-------------HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHH
Confidence 34577765433211 2 35899999999 344334444455679999999999887777766
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+..+...++|+++|+||+|+.+.. .....+.+.+.++ ....+++++||++|.|+++++++|.+.++
T Consensus 114 ~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 114 NVYLALENDLEIIPVINKIDLPSAD-PERVKKEIEEVIG---LDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHHcCCCEEEEEECcCCCccC-HHHHHHHHHHHhC---CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 5555555689999999999986432 2222334433332 21236899999999999999999987654
No 96
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.64 E-value=5.8e-15 Score=97.42 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=70.6
Q ss_pred EEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHH
Q 031293 35 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 114 (162)
Q Consensus 35 ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~ 114 (162)
+|||||+.... ..+..........+|++++++|+..+.+....+++.. ..+.|+++++||+|+.+.. .
T Consensus 41 ~iDtpG~~~~~---------~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~-~ 108 (158)
T PRK15467 41 DIDTPGEYFSH---------PRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD-V 108 (158)
T ss_pred cccCCccccCC---------HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc-H
Confidence 79999974331 1223333334566799999999987654433333332 1367899999999986422 2
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
. .+.+.+...+. ..|++++||++|+|++++++++.+...
T Consensus 109 ~----~~~~~~~~~~~-~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 109 A----ATRKLLLETGF-EEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred H----HHHHHHHHcCC-CCCEEEEECCCccCHHHHHHHHHHhch
Confidence 2 23333333332 259999999999999999999987663
No 97
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.64 E-value=3e-15 Score=98.82 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=80.2
Q ss_pred ChhcccCCCC-ceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 1 MLNALTRQWG-VVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
|+|+|++... .....++.|.+... +.. +.++.++||||. +.+......++ ..+|++++|+|++
T Consensus 15 l~~~l~~~~~~~~~~~~t~g~~~~~--~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~D~~ 79 (162)
T cd04157 15 IINQLKPENAQSQIIVPTVGFNVES--FEKGNLSFTAFDMSGQ----------GKYRGLWEHYY---KNIQGIIFVIDSS 79 (162)
T ss_pred HHHHHcccCCCcceecCccccceEE--EEECCEEEEEEECCCC----------HhhHHHHHHHH---ccCCEEEEEEeCC
Confidence 4677777521 23344555544322 222 445899999998 22233444444 3569999999998
Q ss_pred CCCCccH-HHHHHHH-H-----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHH
Q 031293 79 WGVKPRD-HELISLM-E-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 79 ~~~~~~~-~~~~~~l-~-----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l 149 (162)
.+.+-.. ...+..+ . ..++|+++|+||+|+.+..... .+...++.. .....+++++||++|.|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 80 DRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAV----KITQLLGLENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHH----HHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence 6432111 1122222 2 1368999999999987532221 122222211 112246899999999999999
Q ss_pred HHHHHH
Q 031293 150 RTVLSK 155 (162)
Q Consensus 150 ~~~i~~ 155 (162)
+++|.+
T Consensus 156 ~~~l~~ 161 (162)
T cd04157 156 VQWLQA 161 (162)
T ss_pred HHHHhc
Confidence 999864
No 98
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.63 E-value=3.9e-15 Score=100.61 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=79.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|.+. ..+.+.+..+.+ ...... +.++.++|+||+. .+......++ ..++++++|+|+..
T Consensus 33 li~~l~~~-~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~~---~~ad~ii~vvD~~~ 96 (184)
T smart00178 33 LLHMLKND-RLAQHQPTQHPT--SEELAIGNIKFTTFDLGGHQ----------QARRLWKDYF---PEVNGIVYLVDAYD 96 (184)
T ss_pred HHHHHhcC-CCcccCCccccc--eEEEEECCEEEEEEECCCCH----------HHHHHHHHHh---CCCCEEEEEEECCc
Confidence 45667665 233332222222 222222 4468999999982 2233344444 35699999999976
Q ss_pred CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc---------CCCCCCeEEeecCCCCC
Q 031293 80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN---------NSLVQPVMMVSSKSGAG 145 (162)
Q Consensus 80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~Sa~~~~g 145 (162)
+- .....++...+. ..++|+++|+||+|+......+ .+++.++.. +.+...++++||++|+|
T Consensus 97 ~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~----~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g 172 (184)
T smart00178 97 KERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASED----ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMG 172 (184)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHH----HHHHHcCCCcccccccccCCceeEEEEeecccCCC
Confidence 42 111112222322 1468999999999986322222 222222211 12346799999999999
Q ss_pred HHHHHHHHHHh
Q 031293 146 IRSLRTVLSKI 156 (162)
Q Consensus 146 ~~~l~~~i~~~ 156 (162)
++++++||.+.
T Consensus 173 ~~~~~~wl~~~ 183 (184)
T smart00178 173 YGEGFKWLSQY 183 (184)
T ss_pred hHHHHHHHHhh
Confidence 99999999764
No 99
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.3e-15 Score=112.99 Aligned_cols=150 Identities=22% Similarity=0.240 Sum_probs=105.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|.+. .++.||+.||||||.....+ |.++.++||+|..+.... .-+ ..-+.+..+....+|++++|+|+
T Consensus 284 LlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~--~iE--~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 284 LLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND--GIE--ALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred HHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCC--hhH--HHhHHHHHHHHhhcCEEEEEecc
Confidence 68999999 79999999999998876544 778999999999662111 111 22366666677788999999999
Q ss_pred CCCCCccHHHHHHHHHHh------------CCceEEEEeccCCCCcH-HHHHHHHHHHHHHHhcCCCCCC-eEEeecCCC
Q 031293 78 KWGVKPRDHELISLMERS------------QTKYQVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQP-VMMVSSKSG 143 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~------------~~~~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~-i~~~Sa~~~ 143 (162)
.+..+..+..+...+... ..|+++++||+|+..+- +....... .....+....+ +..+||+++
T Consensus 359 ~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~---~~~~~~~~~~~i~~~vs~~tk 435 (531)
T KOG1191|consen 359 EESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV---YPSAEGRSVFPIVVEVSCTTK 435 (531)
T ss_pred cccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee---ccccccCcccceEEEeeechh
Confidence 887777777777766542 25789999999998652 22110111 11111112234 445999999
Q ss_pred CCHHHHHHHHHHhhh
Q 031293 144 AGIRSLRTVLSKIAR 158 (162)
Q Consensus 144 ~g~~~l~~~i~~~~~ 158 (162)
+|++.|...+-+.+.
T Consensus 436 eg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 436 EGCERLSTALLNIVE 450 (531)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999987654
No 100
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=2e-14 Score=95.36 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=69.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||+ +.+......++ +.+|++++++|+..+.+-.. ..++..+.. .++|+++|+||+|
T Consensus 53 ~l~i~D~~G~----------~~~~~~~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 53 KLQIWDTAGQ----------ERFRTITQSYY---RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEECCCh----------HHHHHHHHHHh---ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 5889999998 22333344443 34699999999987532222 233443433 3588999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+....... .+...+.....+ ...++++||++|.|+++++.++.+.
T Consensus 120 l~~~~~~~--~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 120 LEEQREVL--FEEACTLAEKNG--MLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccccccC--HHHHHHHHHHcC--CcEEEEEECCCCCCHHHHHHHHHHh
Confidence 97443211 112223333332 2478999999999999999998754
No 101
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.62 E-value=5.5e-15 Score=99.02 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=77.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+++|++.. .....++.|.+. ..+.. +.++.++|+||. +.+......++ ..+|++++|+|+.+
T Consensus 31 l~~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~l~D~~G~----------~~~~~~~~~~~---~~~d~vi~V~D~s~ 94 (174)
T cd04153 31 ILYQFLLGE-VVHTSPTIGSNV--EEIVYKNIRFLMWDIGGQ----------ESLRSSWNTYY---TNTDAVILVIDSTD 94 (174)
T ss_pred HHHHHccCC-CCCcCCccccce--EEEEECCeEEEEEECCCC----------HHHHHHHHHHh---hcCCEEEEEEECCC
Confidence 356665442 222333333332 22223 446899999998 12223333333 45699999999976
Q ss_pred CCC--ccHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHH
Q 031293 80 GVK--PRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 80 ~~~--~~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+.. ....++...+.. .++|+++++||+|+......++ +.+.+... .....+++++||++|.|+++++.+
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~----i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~ 170 (174)
T cd04153 95 RERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAE----ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHH----HHHHhCcccccCCceEEEecccCCCCCHHHHHHH
Confidence 421 111223333332 2589999999999864222222 22222211 112247899999999999999999
Q ss_pred HHH
Q 031293 153 LSK 155 (162)
Q Consensus 153 i~~ 155 (162)
|.+
T Consensus 171 l~~ 173 (174)
T cd04153 171 IAS 173 (174)
T ss_pred Hhc
Confidence 864
No 102
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=2.2e-14 Score=110.45 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=82.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC--CceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~--~~~ivv~nK~D 107 (162)
..++.++||||+..... ......+.+. ...+|.|++|+|+..+....+..+++.+...+ .|+++|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~-----~~L~k~M~eq---L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQ-----PHLQKMLNQQ---LARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccc-----hHHHHHHHHH---HhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 46799999999853211 1112223333 44569999999999878888888888888777 49999999999
Q ss_pred CCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 108 TVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 108 l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+.++.. .+...+.+...+.........++++||++|.|++.+++.|..
T Consensus 301 l~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 975322 223333333333332333468999999999999999999976
No 103
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.61 E-value=2.6e-14 Score=95.18 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=82.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|++++...........|.+........+ ..+.++||||. +.+......++ +.+|++++++|+
T Consensus 20 Ll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~---~~~d~il~v~d~ 86 (168)
T cd01866 20 LLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ----------ESFRSITRSYY---RGAAGALLVYDI 86 (168)
T ss_pred HHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHHHh---ccCCEEEEEEEC
Confidence 466776662212223334444333333333 25889999997 22233344443 456999999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.+ ..++..+.. .++|+++|.||+|+..+.... .+..+......+ .+++++||+.+.|+++++.++
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 87 TRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAKEHG---LIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence 75322222 123333333 258899999999987432211 122333333333 489999999999999999998
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 162 ~~~~ 165 (168)
T cd01866 162 AKEI 165 (168)
T ss_pred HHHH
Confidence 8765
No 104
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.61 E-value=8e-15 Score=96.51 Aligned_cols=137 Identities=16% Similarity=0.132 Sum_probs=80.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|++++.. .....+..|.+... ... +..+.++|+||+. .+......++. .+|++++|+|+..
T Consensus 15 li~~~~~~~-~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~---~~~~~i~v~D~~~ 78 (158)
T cd00878 15 ILYKLKLGE-VVTTIPTIGFNVET--VEYKNVSFTVWDVGGQD----------KIRPLWKHYYE---NTNGIIFVVDSSD 78 (158)
T ss_pred HHHHHhcCC-CCCCCCCcCcceEE--EEECCEEEEEEECCCCh----------hhHHHHHHHhc---cCCEEEEEEECCC
Confidence 577888773 33333344433322 222 4469999999982 22333444433 3599999999986
Q ss_pred CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+- ......+...+. ..+.|+++|+||+|+.......+..+.+.... ......+++++||++|.|+++++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 79 RERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK--ILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh--ccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 42 111111222222 23689999999999975442322222221110 122346899999999999999999986
Q ss_pred H
Q 031293 155 K 155 (162)
Q Consensus 155 ~ 155 (162)
+
T Consensus 157 ~ 157 (158)
T cd00878 157 Q 157 (158)
T ss_pred h
Confidence 4
No 105
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.61 E-value=1.2e-14 Score=96.06 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=69.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~ 106 (162)
++.++||||+ +.+..+...++. .+|++++|+|+.+..+-.. ..+...+. ..++|+++|+||+
T Consensus 51 ~~~i~Dt~G~----------~~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 117 (164)
T cd04145 51 ILDILDTAGQ----------EEFSAMREQYMR---TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKA 117 (164)
T ss_pred EEEEEECCCC----------cchhHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCc
Confidence 4789999998 223444555554 3589999999876432111 11222222 2368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+.++..... +...+.....+ .+++++||++|.|++++++++.+.+
T Consensus 118 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 118 DLEHQRKVSR--EEGQELARKLK---IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cccccceecH--HHHHHHHHHcC---CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 9875432211 12233333332 4899999999999999999998765
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.61 E-value=1.2e-14 Score=96.06 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+.++.++||||+. .+......++ +.+|++++|+|+.+.. .....++...+.. .+.|++++.|
T Consensus 43 ~~~~~l~D~~G~~----------~~~~~~~~~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 43 NISFTVWDVGGQD----------KIRPLWRHYF---QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred CEEEEEEECCCCH----------hHHHHHHHHh---cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 3458999999982 2233344443 4459999999997632 2222222233322 2589999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+|+.+.....+..+.+. +.....+.+.++++||++|.|+++++++|.+
T Consensus 110 K~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 110 KQDLPNAMSAAEVTDKLG--LHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCCCCHHHHHHHhC--ccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999864322222112210 1111122346788999999999999999864
No 107
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.60 E-value=1.4e-14 Score=95.52 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+.++.++||||+ +.+......++ ..++++++|+|+..+.+ ....++...++. .++|+++|+|
T Consensus 42 ~~~~~i~Dt~G~----------~~~~~~~~~~~---~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 42 NLKFQVWDLGGQ----------TSIRPYWRCYY---SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred CEEEEEEECCCC----------HHHHHHHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 345899999998 12233333443 34699999999876421 112223333332 3689999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+|+.......+ +.+.+... .....+++++||++|.|+++++++|.+
T Consensus 109 K~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 109 KQDMPGALSEAE----ISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCCCCCHHH----HHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 999864321211 22222211 111246999999999999999999864
No 108
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.60 E-value=1.9e-14 Score=94.88 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=82.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++. ... .+..|+.+.+... ...+ .++.++||||. +.+..++..++ +.++++++|+
T Consensus 16 li~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~---~~~~~ii~v~ 80 (161)
T cd01861 16 IITRFMYD-TFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ----------ERFRSLIPSYI---RDSSVAVVVY 80 (161)
T ss_pred HHHHHHcC-CCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHHHh---ccCCEEEEEE
Confidence 57888877 333 2445555554433 2222 24889999998 22333444444 3459999999
Q ss_pred ecCCCCCccH-HHHHHHH-HHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLM-ERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l-~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-.. ..++..+ ... +.|+++++||+|+........ +.........+ .+++++||+++.|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST--EEGEKKAKELN---AMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCH--HHHHHHHHHhC---CEEEEEeCCCCCCHHHHHH
Confidence 9876422111 2233333 233 389999999999953322111 12222222222 5899999999999999999
Q ss_pred HHHHh
Q 031293 152 VLSKI 156 (162)
Q Consensus 152 ~i~~~ 156 (162)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99764
No 109
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.60 E-value=1.1e-14 Score=96.99 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=68.2
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+.++.++||||. +.+......++. .+|++++|+|+.+.. .....++.+.+.. .++|+++|.|
T Consensus 52 ~~~~~l~Dt~G~----------~~~~~~~~~~~~---~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 52 NVKFNVWDVGGQ----------DKIRPLWRHYYT---GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred CEEEEEEECCCC----------HHHHHHHHHHhc---cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 345899999999 222333344433 469999999997642 2222222233332 2589999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+|+.+....+ .+++.++.. .....+++++||++|.|+++++.+|.+
T Consensus 119 K~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 119 KQDLPDAMKPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CcCCccCCCHH----HHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 99986422111 233332211 112347899999999999999999864
No 110
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.60 E-value=7.6e-14 Score=92.29 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=70.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
.+.++||||+ +.+..+...++. .+|++++|+|+..+.+-.+ ..++..+... ++|+++|+||+|+
T Consensus 50 ~~~i~Dt~G~----------~~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 50 LVDFWDTAGQ----------ERFQTMHASYYH---KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEeCCCc----------hhhhhhhHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC
Confidence 4789999998 333444455543 4599999999876543222 2344555443 6899999999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
... ... ...+.....+ .+++++||++|.|++++++.+.+.+.
T Consensus 117 ~~~-~~~----~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 117 DPS-VTQ----KKFNFAEKHN---LPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred chh-HHH----HHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 532 111 1112222222 58999999999999999999987654
No 111
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.60 E-value=8.4e-15 Score=97.66 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+.++.++||||... +......++ +.+|++++|+|+..+ +.....++...+.. .+.|+++|.|
T Consensus 42 ~~~i~l~Dt~G~~~----------~~~~~~~~~---~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 42 NLKFTIWDVGGKHK----------LRPLWKHYY---LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFAN 108 (169)
T ss_pred CEEEEEEECCCChh----------cchHHHHHh---ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEe
Confidence 44588999999822 122333443 345999999998764 22222222233322 2478999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+|+......++ +++.+.... .+...++++||++|.|+++++.+|.+.+.
T Consensus 109 K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 109 KQDVAGALSVEE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CcCcccCCCHHH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 999864322222 222222111 11236788999999999999999987553
No 112
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.59 E-value=2.7e-14 Score=99.98 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=83.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+........+.+|++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus 63 ~~~i~liDTPG~-------------~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~ 129 (237)
T cd04168 63 DTKVNLIDTPGH-------------MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred CEEEEEEeCCCc-------------cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 557999999999 3333333444456699999999998887777777888888899999999999987
Q ss_pred CcHHHHHHHHHHHHHHHhc----------------------------------------------------------CCC
Q 031293 110 FPIDVARRAMQIEESLKAN----------------------------------------------------------NSL 131 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~~~ 131 (162)
... ..+.++.+++.++.. ...
T Consensus 130 ~a~-~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 130 GAD-LEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred CCC-HHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 422 234444444433220 112
Q ss_pred CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 132 VQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 132 ~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..|+++.||.++.|+..|++.|...++
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 368888899999999999999987654
No 113
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.3e-14 Score=100.75 Aligned_cols=131 Identities=24% Similarity=0.338 Sum_probs=102.6
Q ss_pred ccCCCCcceEEEEEEe----C--------CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC
Q 031293 14 TSDKPGLTQTINFFKL----G--------TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV 81 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~----~--------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~ 81 (162)
.|...|.|.|+.+-.+ . -++++||+||| ..+++..+.+...+|.+++|+|...+.
T Consensus 41 qS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH-------------asLIRtiiggaqiiDlm~lviDv~kG~ 107 (522)
T KOG0461|consen 41 QSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH-------------ASLIRTIIGGAQIIDLMILVIDVQKGK 107 (522)
T ss_pred cccccceeEeecceeeecccccccCccccceeEEEeCCCc-------------HHHHHHHHhhhheeeeeeEEEehhccc
Confidence 5667888988887544 1 14799999999 889999999999999999999999999
Q ss_pred CccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHH----HHHHHHHHHhcCC-CCCCeEEeecCCC----CCHHHHHHH
Q 031293 82 KPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARR----AMQIEESLKANNS-LVQPVMMVSSKSG----AGIRSLRTV 152 (162)
Q Consensus 82 ~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~-~~~~i~~~Sa~~~----~g~~~l~~~ 152 (162)
..+.-+++-.-.......++|+||+|...+...... ...+++-++..+. ...|++++||..| +++.+|.+.
T Consensus 108 QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~ 187 (522)
T KOG0461|consen 108 QTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEA 187 (522)
T ss_pred ccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHH
Confidence 888888876666667789999999999876544333 3344444444332 3379999999999 889999998
Q ss_pred HHHhh
Q 031293 153 LSKIA 157 (162)
Q Consensus 153 i~~~~ 157 (162)
+.+.+
T Consensus 188 l~s~i 192 (522)
T KOG0461|consen 188 LESRI 192 (522)
T ss_pred HHHhh
Confidence 88765
No 114
>PRK10218 GTP-binding protein; Provisional
Probab=99.59 E-value=4e-14 Score=110.33 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=89.9
Q ss_pred CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293 16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 92 (162)
Q Consensus 16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l 92 (162)
...|.|.......+ +.++.+|||||+ ..+........+.+|++++|+|+.++...++..++..+
T Consensus 50 ~erGiTi~~~~~~i~~~~~~inliDTPG~-------------~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a 116 (607)
T PRK10218 50 KERGITILAKNTAIKWNDYRINIVDTPGH-------------ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKA 116 (607)
T ss_pred ccCceEEEEEEEEEecCCEEEEEEECCCc-------------chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHH
Confidence 45667665544333 457999999999 33333333344567999999999988877777788887
Q ss_pred HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCC----------CHHHHHHHHHHhhh
Q 031293 93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGA----------GIRSLRTVLSKIAR 158 (162)
Q Consensus 93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~----------g~~~l~~~i~~~~~ 158 (162)
...++|.++++||+|+... .....++.+.+.+... ....+|++++||.+|. |+..|++.|.+.++
T Consensus 117 ~~~gip~IVviNKiD~~~a-~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 117 FAYGLKPIVVINKVDRPGA-RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred HHcCCCEEEEEECcCCCCC-chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 7789999999999998642 2333344454444321 1123689999999998 58888888877654
No 115
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=2.1e-14 Score=96.84 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+..+.++|+||+ +.+..+...+++ .+|++++|+|+++..+- ...++...+.. .++|+++|+|
T Consensus 60 ~~~~~i~D~~Gq----------~~~~~~~~~~~~---~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 60 NISFTVWDVGGQ----------DKIRPLWRHYFQ---NTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred CEEEEEEECCCC----------HHHHHHHHHHhc---cCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 345899999998 223444455543 45999999999864211 11122222222 2589999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+|+.+.... +.+.+.++... .+.+.++++||++|+|+++++++|.+.+
T Consensus 127 K~Dl~~~~~~----~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 127 KQDLPNAMNA----AEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCCCCCH----HHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 9998754332 23333333221 1223466799999999999999998765
No 116
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=4.3e-15 Score=109.93 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=93.1
Q ss_pred ccCCCCcceEEEEE----Ee--C--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH
Q 031293 14 TSDKPGLTQTINFF----KL--G--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD 85 (162)
Q Consensus 14 ~~~~~g~t~~~~~~----~~--~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~ 85 (162)
.+..+|.|...+.. .. + ..+.++||||| -+|..+..+.+..|.++++|+||..++..++
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH-------------VDFsYEVSRSLAACEGalLvVDAsQGveAQT 117 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-------------VDFSYEVSRSLAACEGALLVVDASQGVEAQT 117 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-------------cceEEEehhhHhhCCCcEEEEECccchHHHH
Confidence 45668888655532 22 1 34889999999 5555666666677799999999999987766
Q ss_pred HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 86 HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 86 ~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..-.-..-+.+.-++-|+||+|+.. .+.+...+.+++.++.. ....+.+||++|.|+++++++|.+.++
T Consensus 118 lAN~YlAle~~LeIiPViNKIDLP~-Adpervk~eIe~~iGid---~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 118 LANVYLALENNLEIIPVLNKIDLPA-ADPERVKQEIEDIIGID---ASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHHHHHcCcEEEEeeecccCCC-CCHHHHHHHHHHHhCCC---cchheeEecccCCCHHHHHHHHHhhCC
Confidence 5533233345788999999999984 33445556666665533 248899999999999999999988764
No 117
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.59 E-value=6.8e-14 Score=95.56 Aligned_cols=149 Identities=21% Similarity=0.191 Sum_probs=93.4
Q ss_pred ChhcccCCCCceeccCCCC---cceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPG---LTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g---~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.......+...| +|+....+.. ...+.++||||++...... +.+++.. ....+|+++++.
T Consensus 17 Lin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------~~~l~~~--~~~~~d~~l~v~ 88 (197)
T cd04104 17 FINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPP------DDYLEEM--KFSEYDFFIIIS 88 (197)
T ss_pred HHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCH------HHHHHHh--CccCcCEEEEEe
Confidence 5899988632111121222 3444443432 2368999999997643221 2222221 234568888874
Q ss_pred ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH---------HHHHHHHHH----HHHHhcCCCCCCeEEeecC-
Q 031293 76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID---------VARRAMQIE----ESLKANNSLVQPVMMVSSK- 141 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~---------~~~~~~~~~----~~~~~~~~~~~~i~~~Sa~- 141 (162)
+ .+++..+..+++.+...+.|+++|+||+|+..... .++.++.++ +.+...+....+++.+|+.
T Consensus 89 ~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~ 166 (197)
T cd04104 89 S--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFD 166 (197)
T ss_pred C--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence 3 35777888888888888899999999999863222 123333333 3343334455699999998
Q ss_pred -CCCCHHHHHHHHHHhhhh
Q 031293 142 -SGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 142 -~~~g~~~l~~~i~~~~~~ 159 (162)
.+.|+..|.+.|...++.
T Consensus 167 ~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 167 PSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred hhhcChHHHHHHHHHHhhH
Confidence 679999999999887763
No 118
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.59 E-value=4.1e-14 Score=93.51 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=82.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+.+|.+........ +.++.++|+||. +.+......++ +.+|++++++|+
T Consensus 17 li~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~---~~~~~~i~v~d~ 83 (163)
T cd01860 17 LVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ----------ERYRSLAPMYY---RGAAAAIVVYDI 83 (163)
T ss_pred HHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch----------HHHHHHHHHHh---ccCCEEEEEEEC
Confidence 56888877322224445554332222233 335889999998 22233333333 346999999998
Q ss_pred CCCCCc-cHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+- ....++..+... ++|+++++||+|+.+..... .+...+.....+ .+++++||++|.|++++++++
T Consensus 84 ~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 84 TSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQEYADENG---LLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHH
Confidence 754211 112233333322 47899999999987422111 112223333333 589999999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 8764
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=3.5e-14 Score=94.38 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEec
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTK 105 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK 105 (162)
+.++.++||||.+.. ...+..++ ..+|++++++|...+.+-... .+...+.. .+.|+++|+||
T Consensus 46 ~~~~~i~Dt~G~~~~----------~~~~~~~~---~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK 112 (166)
T cd01893 46 RVPTTIVDTSSRPQD----------RANLAAEI---RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNK 112 (166)
T ss_pred eEEEEEEeCCCchhh----------hHHHhhhc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 345889999998321 22223333 456999999998765433221 23344433 26899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+|+.+........+.+........ ...+++++||++|.|++++++.+...+
T Consensus 113 ~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 113 SDLRDGSSQAGLEEEMLPIMNEFR-EIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hhcccccchhHHHHHHHHHHHHHh-cccEEEEeccccccCHHHHHHHHHHHh
Confidence 999754432111111211111111 113799999999999999999988654
No 120
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.58 E-value=5.9e-14 Score=94.32 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=70.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.+|||||. +.+......++ +.+|++++|.|.....+-.+. .++..+.. .+.|+++|.||+
T Consensus 64 ~~~i~Dt~G~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 64 HLQLWDTAGQ----------ERFRSLTTAFF---RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEeCCCh----------HHHHHHHHHHh---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCc
Confidence 4789999998 23344444454 356999999998764222221 23333333 257899999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+.+...... +...+.....+ .+++++||++|.|+++++++|.+.+
T Consensus 131 Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 131 DLEDQRQVSE--EQAKALADKYG---IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred cchhcCccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9975332211 12333333333 4899999999999999999998754
No 121
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.58 E-value=5.6e-14 Score=92.78 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=68.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--hCCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl 108 (162)
++.++||||. +.+......+++ .++++++|.|..++-+-.. ..++..+.. .++|+++|+||+|+
T Consensus 52 ~~~i~D~~G~----------~~~~~~~~~~~~---~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 52 RLMLWDTAGQ----------EEFDAITKAYYR---GAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEeeCCch----------HHHHHhHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhc
Confidence 5889999997 333444455543 4589999999875422111 122233322 36899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
..+..... +.........+ .+++++||++|.|+++++++|.+.
T Consensus 119 ~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 119 LDQAVITN--EEAEALAKRLQ---LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ccccCCCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHh
Confidence 75433211 12222333332 489999999999999999998753
No 122
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.58 E-value=7.8e-14 Score=92.57 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=69.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||+ +.+......++ +.+|++++++|+.+.-+-.. ..++..+.. .+.|+++|.||+|
T Consensus 52 ~~~i~D~~G~----------~~~~~~~~~~~---~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~D 118 (166)
T cd01869 52 KLQIWDTAGQ----------ERFRTITSSYY---RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEECCCc----------HhHHHHHHHHh---CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChh
Confidence 5889999998 22333444443 35699999999876321111 122333332 2579999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+........ +.........+ .+++++||++|.|+++++.+|.+.+
T Consensus 119 l~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 119 LTDKRVVDY--SEAQEFADELG---IPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred cccccCCCH--HHHHHHHHHcC---CeEEEEECCCCcCHHHHHHHHHHHH
Confidence 864332211 12222233222 4899999999999999999998765
No 123
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.58 E-value=7.3e-14 Score=91.99 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHH----HhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME----RSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~----~~~~~~ivv~nK~ 106 (162)
.+.+|||||. +.+..+...++.. ++++++++|.....+-... .+...+. ..++|+++|+||+
T Consensus 50 ~~~i~Dt~G~----------~~~~~l~~~~~~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQ----------EEYSAMRDQYMRT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCC----------cchHHHHHHHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3678999998 2334555556544 4888888887643211111 1222222 2368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ ...+.....+ .+++++||++|.|++++++++.+.+
T Consensus 117 Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 117 DLAARTVSSR---QGQDLAKSYG---IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ccccceecHH---HHHHHHHHhC---CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 9975322211 2222223222 4899999999999999999998654
No 124
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.58 E-value=1e-13 Score=91.88 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=80.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ .++.++|+||. +.+......++ +.+++++++.|+
T Consensus 19 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~---~~~~~~i~v~d~ 85 (165)
T cd01868 19 LLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ----------ERYRAITSAYY---RGAVGALLVYDI 85 (165)
T ss_pred HHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHHHH---CCCCEEEEEEEC
Confidence 577887773222223333322222222222 24889999998 22344444444 345899999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.++.+-.. ..++..+.. .+.|+++|+||+|+....... .+...+.....+ .+++++||++|.|++++++++
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 86 TKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAKAFAEKNG---LSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHH
Confidence 75332211 123333332 248999999999987432211 112333333222 489999999999999999998
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 7653
No 125
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.57 E-value=3.5e-14 Score=95.89 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=67.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHH----HHHHHhCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELI----SLMERSQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~----~~l~~~~~~~ivv~nK 105 (162)
..+.++||||. +.+......++ +++|++++|+|+..+-+... ...+ ......++|+++|+||
T Consensus 52 ~~l~l~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 52 ITFHFWDVGGQ----------EKLRPLWKSYT---RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred eEEEEEECCCc----------HhHHHHHHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 35899999998 22233333443 45699999999876421111 1111 2222346899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhc---CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKAN---NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+|+....... .+...+... .....+++++||++|.|+++++.+|.+.+
T Consensus 119 ~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 119 QDLPNALSVS----EVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cCccccCCHH----HHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 9986321111 122222211 11124688999999999999999998755
No 126
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.57 E-value=1.1e-13 Score=94.66 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=71.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.+|||||. +.+..+...|++ ++|++++|.|....-+-... .++..+.. .++|+++|.||+|
T Consensus 50 ~l~iwDtaGq----------e~~~~l~~~y~~---~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 50 RLQIWDTAGQ----------ERFNSITSAYYR---SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred EEEEEeCCCc----------hhhHHHHHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 4789999998 334455556654 45999999998764322221 23344443 2588999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+....++.. +..++...... ..+++.+||++|.|+++++.++.+.+
T Consensus 117 L~~~~~v~~--~~~~~~a~~~~--~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 117 CETDREISR--QQGEKFAQQIT--GMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cccccccCH--HHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 964333221 12222222221 14799999999999999999998754
No 127
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.57 E-value=3.2e-14 Score=101.30 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293 16 DKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 92 (162)
Q Consensus 16 ~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l 92 (162)
..+|+|.+..... + +.++.++||||+ ..+..+.....+.+|++++|+|+..+....+..++..+
T Consensus 46 ~~rgiti~~~~~~~~~~~~~i~liDTPG~-------------~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~ 112 (270)
T cd01886 46 RERGITIQSAATTCFWKDHRINIIDTPGH-------------VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQA 112 (270)
T ss_pred cCCCcCeeccEEEEEECCEEEEEEECCCc-------------HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777655433 2 567999999999 45555666666777999999999998888888888888
Q ss_pred HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
...++|+++++||+|+.... .....+.+++.++.. ....++|+|+..
T Consensus 113 ~~~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~--~~~~~~Pisa~~ 159 (270)
T cd01886 113 DRYNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGAN--PVPLQLPIGEED 159 (270)
T ss_pred HHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCC--ceEEEeccccCC
Confidence 88899999999999987432 334455666655433 223567777753
No 128
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.57 E-value=1e-13 Score=92.58 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=69.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHHh----CCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMERS----QTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~~----~~~~ivv~nK~ 106 (162)
++.++||||. +.+......++ +.+|++++|.|+...-+-. ...++..+... ..|+++|.||+
T Consensus 50 ~l~i~Dt~G~----------~~~~~~~~~~~---~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~ 116 (170)
T cd04108 50 SLQLWDTAGQ----------ERFKCIASTYY---RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKK 116 (170)
T ss_pred EEEEEeCCCh----------HHHHhhHHHHh---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEECh
Confidence 5889999998 22333333443 4569999999997532111 12233333222 25689999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+........+...+.....+ .+++++||++|.|+++++..|.+++.
T Consensus 117 Dl~~~~~~~~~~~~~~~~~~~~~---~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 117 DLSSPAQYALMEQDAIKLAAEMQ---AEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred hcCccccccccHHHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 98654332111122222233222 47899999999999999999988764
No 129
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.57 E-value=1.1e-13 Score=91.74 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--------hCCceEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--------SQTKYQVV 102 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--------~~~~~ivv 102 (162)
.+.++||||. +.+......++ +.++++++++|.+.+.+-.. ..++..+.. .+.|+++|
T Consensus 50 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 50 RVNFFDLSGH----------PEYLEVRNEFY---KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred EEEEEECCcc----------HHHHHHHHHHh---ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence 5889999998 22233344443 34699999999876422111 123333322 24789999
Q ss_pred EeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 103 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 103 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+||+|+..+..... +..+......+ .+++++||++|.|+++++++|.+.+
T Consensus 117 ~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 117 ANKIDLTKHRAVSE--DEGRLWAESKG---FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEchhcccccccCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999973221111 11222223222 4899999999999999999998653
No 130
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.57 E-value=6e-14 Score=94.10 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+.++.++||||. +.+......++ +.+|++++|+|+.++. .....++...+.. .++|+++|+|
T Consensus 56 ~~~l~l~D~~G~----------~~~~~~~~~~~---~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 56 NISFTVWDVGGQ----------DKIRPLWRHYY---TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred CEEEEEEECCCC----------hhhHHHHHHHh---CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 345889999998 22233444554 3459999999987642 1112222223322 2579999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|.|+.+..... .+.+.++.. ..+.+.++++||++|.|+++++++|.+.+
T Consensus 123 K~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 123 KQDLPDAMKAA----EITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CcCcccCCCHH----HHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99986432222 222222211 12234577899999999999999998764
No 131
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.57 E-value=6.3e-14 Score=91.73 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=80.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..+.+........ ...+.++|+||+ +.+......++ ..+|++++++|+
T Consensus 16 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~---~~~d~ii~v~d~ 82 (159)
T cd00154 16 LLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ----------ERFRSITPSYY---RGAHGAILVYDI 82 (159)
T ss_pred HHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh----------HHHHHHHHHHh---cCCCEEEEEEEC
Confidence 46777766322222334444333333332 235889999998 22233344443 346999999999
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+... ..++..+... +.|+++++||+|+..+.... .+.+++..... ..+++.+||.++.|+++++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 83 TNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS--TEEAQQFAKEN---GLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc--HHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHH
Confidence 76321111 2233344333 48999999999996222111 12333333332 2589999999999999999988
Q ss_pred H
Q 031293 154 S 154 (162)
Q Consensus 154 ~ 154 (162)
.
T Consensus 158 ~ 158 (159)
T cd00154 158 A 158 (159)
T ss_pred h
Confidence 5
No 132
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.57 E-value=9.8e-14 Score=91.68 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=69.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++|+||. +.+......++ +.+|++++++|+..+.+.... .++..+.. .++|+++|+||+|
T Consensus 50 ~~~l~D~~G~----------~~~~~~~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D 116 (164)
T smart00175 50 KLQIWDTAGQ----------ERFRSITSSYY---RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSD 116 (164)
T ss_pred EEEEEECCCh----------HHHHHHHHHHh---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence 5789999998 22333344444 346999999999764322221 13333322 3589999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+....... .+..++.....+ .+++++||.+|.|+++++++|.+.+
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 117 LEDQRQVS--REEAEAFAEEHG---LPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred cccccCCC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 87432211 112222333333 4799999999999999999998765
No 133
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=1.2e-13 Score=94.59 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=70.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHH-------HhCCceEEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME-------RSQTKYQVVL 103 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~-------~~~~~~ivv~ 103 (162)
.+.+|||||. +.+..+...+++ +++++++|+|...+.+-... .++..+. ..++|+++|+
T Consensus 51 ~l~l~Dt~G~----------~~~~~~~~~~~~---~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~ 117 (201)
T cd04107 51 RLQLWDIAGQ----------ERFGGMTRVYYR---GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLA 117 (201)
T ss_pred EEEEEECCCc----------hhhhhhHHHHhC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEE
Confidence 4789999998 223444455543 45999999998764221111 1222222 1358999999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
||+|+.+..... .+.+.+.+...+ ..+++++||++|.|+++++.+|.+.+
T Consensus 118 NK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 118 NKCDLKKRLAKD--GEQMDQFCKENG--FIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred ECCCcccccccC--HHHHHHHHHHcC--CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999996322111 123334444443 24899999999999999999998755
No 134
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.57 E-value=5.7e-14 Score=92.73 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=69.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH---HhCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~---~~~~~~ivv~nK~D 107 (162)
.+.++|+||+ +.+......++ +.+|++++++|+.++.+... ..++..+. ..++|+++|.||+|
T Consensus 50 ~l~l~D~~G~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 116 (161)
T cd04113 50 KLQIWDTAGQ----------ERFRSVTRSYY---RGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEECcch----------HHHHHhHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchh
Confidence 4789999998 22233334443 45699999999987432222 22333332 23689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+....... .+.........+ .+++.+||+++.|++++++++.+.
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 117 LADQREVT--FLEASRFAQENG---LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred cchhccCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHh
Confidence 97432211 122233333333 589999999999999999998764
No 135
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.57 E-value=1.1e-13 Score=91.25 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=82.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+.++.+........+ .++.++||||. +.+......++ +.+|++++++|+
T Consensus 16 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~---~~~d~~i~v~d~ 82 (161)
T cd01863 16 LLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ----------ERFRTLTSSYY---RGAQGVILVYDV 82 (161)
T ss_pred HHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHHHh---CCCCEEEEEEEC
Confidence 467787763323345555555444433332 34889999998 12222333333 456999999998
Q ss_pred CCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
..+.+-.. ..++..+.. .+.|+++|+||+|+.......+ ...+.....+ .+++++||++|.|++++++.
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 83 TRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTRE---EGLKFARKHN---MLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred CCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHH---HHHHHHHHcC---CEEEEEecCCCCCHHHHHHH
Confidence 75432111 112333322 3588999999999973322111 2222333232 58999999999999999998
Q ss_pred HHHh
Q 031293 153 LSKI 156 (162)
Q Consensus 153 i~~~ 156 (162)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd01863 157 LVEK 160 (161)
T ss_pred HHHh
Confidence 8754
No 136
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.56 E-value=1.5e-13 Score=91.30 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=69.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||. +.+......++ ++++++++|.|...+.+-.. ..++..+.. .+.|+++|.||+|
T Consensus 52 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 52 KLQIWDTAGQ----------ERFRAVTRSYY---RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEECCCc----------HHHHHHHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 4789999998 23344444454 35699999999876422111 122222222 2578999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+....... .+..++.....+ .+++++||++|.|+++++..+...+
T Consensus 119 l~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 119 LEAQRDVT--YEEAKQFADENG---LLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cccccCcC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 97543221 112223333332 4899999999999999998887654
No 137
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.56 E-value=1.7e-13 Score=91.21 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=68.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHH-HHH------hCCceEEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISL-MER------SQTKYQVVL 103 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~-l~~------~~~~~ivv~ 103 (162)
.+.++|+||+ +.+..+...++ +.+|++++++|+..+.+-... .+... +.. .++|+++|+
T Consensus 50 ~~~~~D~~g~----------~~~~~~~~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (172)
T cd01862 50 TLQIWDTAGQ----------ERFQSLGVAFY---RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG 116 (172)
T ss_pred EEEEEeCCCh----------HHHHhHHHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence 3679999998 22233333343 456999999998764321111 12221 221 268999999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
||+|+..+.... .+..+..+...+ ..+++++||.+|.|++++++++.+.+.
T Consensus 117 nK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 117 NKIDLEEKRQVS--TKKAQQWCQSNG--NIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ECcccccccccC--HHHHHHHHHHcC--CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999997422110 122233333332 258999999999999999999987553
No 138
>COG2262 HflX GTPases [General function prediction only]
Probab=99.56 E-value=1e-13 Score=101.25 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=94.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE--e--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ...+.+....|.+..... + +.++.+.||-|+-.. .+....+.| +..+.+...+|+++.|+|
T Consensus 208 L~N~LT~~--~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-LP~~LV~AF----ksTLEE~~~aDlllhVVD 280 (411)
T COG2262 208 LFNALTGA--DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-LPHPLVEAF----KSTLEEVKEADLLLHVVD 280 (411)
T ss_pred HHHHHhcc--CeeccccccccccCceeEEEeCCCceEEEecCccCccc-CChHHHHHH----HHHHHHhhcCCEEEEEee
Confidence 68999988 456677777776555432 2 567999999998332 233333344 344445566799999999
Q ss_pred cCCCCCccHHH-HHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRDHE-LISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
++++......+ ....|.+ ..+|+|.|+||+|++.... ... .+.... ...+++||++|.|++.|++.
T Consensus 281 aSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~----~~~~~~---~~~v~iSA~~~~gl~~L~~~ 350 (411)
T COG2262 281 ASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILA----ELERGS---PNPVFISAKTGEGLDLLRER 350 (411)
T ss_pred cCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhh----hhhhcC---CCeEEEEeccCcCHHHHHHH
Confidence 99873222222 2233333 4689999999999885543 111 122121 26899999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 351 i~~~l~ 356 (411)
T COG2262 351 IIELLS 356 (411)
T ss_pred HHHHhh
Confidence 998765
No 139
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.56 E-value=3.1e-14 Score=94.75 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=80.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++. ......++.|.+.. .+.. +.++.++|+||. +.+......|+ ++++++++|+|+..
T Consensus 15 l~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~---~~a~~ii~V~D~s~ 78 (167)
T cd04161 15 LVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGG----------ANFRGIWVNYY---AEAHGLVFVVDSSD 78 (167)
T ss_pred HHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCc----------HHHHHHHHHHH---cCCCEEEEEEECCc
Confidence 46777765 33334455554422 2222 446899999998 22233344454 45699999999876
Q ss_pred CCCccH-HHHHHHHH-H---hCCceEEEEeccCCCCcHHHHHHHHHH--HHHHHhcCCCCCCeEEeecCCC------CCH
Q 031293 80 GVKPRD-HELISLME-R---SQTKYQVVLTKTDTVFPIDVARRAMQI--EESLKANNSLVQPVMMVSSKSG------AGI 146 (162)
Q Consensus 80 ~~~~~~-~~~~~~l~-~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~Sa~~~------~g~ 146 (162)
..+-.. ..++..+. . .++|+++|+||+|+.+........+.+ ....... ...++++++||++| .|+
T Consensus 79 ~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~~Sa~~g~~~~~~~g~ 157 (167)
T cd04161 79 DDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNEN-KSLCHIEPCSAIEGLGKKIDPSI 157 (167)
T ss_pred hhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCC-CceEEEEEeEceeCCCCccccCH
Confidence 431111 12233222 1 368999999999987543222222221 1111111 12357888999998 899
Q ss_pred HHHHHHHHH
Q 031293 147 RSLRTVLSK 155 (162)
Q Consensus 147 ~~l~~~i~~ 155 (162)
.+.++||.+
T Consensus 158 ~~~~~wl~~ 166 (167)
T cd04161 158 VEGLRWLLA 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999964
No 140
>PLN03118 Rab family protein; Provisional
Probab=99.56 E-value=1.7e-13 Score=94.55 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=83.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. .....++..|.+.....+.++ ..+.++||||. +.+......+++ .+|++++|+|+
T Consensus 30 li~~l~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~~~~---~~d~~vlv~D~ 95 (211)
T PLN03118 30 LLVSFISS-SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ----------ERFRTLTSSYYR---NAQGIILVYDV 95 (211)
T ss_pred HHHHHHhC-CCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc----------hhhHHHHHHHHh---cCCEEEEEEEC
Confidence 46777766 334444444444333333333 25789999998 223344444543 45999999998
Q ss_pred CCCCCccHH--HHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 78 KWGVKPRDH--ELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 78 ~~~~~~~~~--~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
....+-... .+...+.. .+.|+++|.||+|+........ +.........+ .+++++||+++.|++++++
T Consensus 96 ~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~~~~~~~~~---~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 96 TRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEGMALAKEHG---CLFLECSAKTRENVEQCFE 170 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHH
Confidence 764222221 12222322 2468999999999974332211 12222233232 4789999999999999999
Q ss_pred HHHHhh
Q 031293 152 VLSKIA 157 (162)
Q Consensus 152 ~i~~~~ 157 (162)
+|...+
T Consensus 171 ~l~~~~ 176 (211)
T PLN03118 171 ELALKI 176 (211)
T ss_pred HHHHHH
Confidence 998654
No 141
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.56 E-value=1.8e-13 Score=90.80 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~D 107 (162)
.+.++||||+ +.+......+ .+++++++++.|.....+-.. .+++..+... ..|+++|+||+|
T Consensus 51 ~~~l~Dt~g~----------~~~~~~~~~~---~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 51 KLQIWDTAGQ----------ERYRTITTAY---YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEECCCh----------HHHHHHHHHH---ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 4889999998 2223333333 355699999999875321111 2233344332 578999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+....... .+...+.....+ .+++++||++|.|+++++++|.+.+
T Consensus 118 l~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 118 MEDERVVS--SERGRQLADQLG---FEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred cCcccccC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 97533211 112222222222 3799999999999999999998754
No 142
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=2.1e-13 Score=92.69 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=69.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
.+.+|||||. +.+......++ +.+|++++|+|+....+-.. ..++..+.. .++|+++|+||+|
T Consensus 51 ~~~i~Dt~G~----------~~~~~~~~~~~---~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQ----------ERFRSVTHAYY---RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEeCCCc----------HHHHHhhHHHc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 5889999998 22233333443 44699999999876422111 223333333 2589999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+..+..... +.........+ .+++++||++|.|+++++.+|.+.+.
T Consensus 118 l~~~~~~~~--~~~~~l~~~~~---~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 118 MSGERVVKR--EDGERLAKEYG---VPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred chhccccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 864322111 12222233232 48999999999999999999987654
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.55 E-value=5.5e-14 Score=91.02 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=66.4
Q ss_pred EEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH
Q 031293 34 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113 (162)
Q Consensus 34 ~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~ 113 (162)
.++||||... .. ......+....+++|++++|+|+..+.+.....+... ...|+++|+||+|+.+...
T Consensus 38 ~~iDt~G~~~------~~---~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~ 105 (142)
T TIGR02528 38 GAIDTPGEYV------EN---RRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV 105 (142)
T ss_pred eeecCchhhh------hh---HHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc
Confidence 6899999711 01 1122222233567799999999987665544444332 2459999999999874322
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
.. +..++.+...+ ..+++++||++|.|++++++++.
T Consensus 106 ~~---~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 106 DI---ERAKELLETAG--AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CH---HHHHHHHHHcC--CCcEEEEecCCCCCHHHHHHHHh
Confidence 11 22223333332 24799999999999999998874
No 144
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.55 E-value=7.3e-14 Score=97.66 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=90.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..|++|.+.... .. +.++.++||||+....... ..+....+...+++|++++|+|+
T Consensus 16 Ll~~Ltg~--~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~------~~~~~~~l~~~~~ad~il~V~D~ 87 (233)
T cd01896 16 LLSKLTNT--KSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG------KGRGRQVIAVARTADLILMVLDA 87 (233)
T ss_pred HHHHHHCC--CccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc------hhHHHHHHHhhccCCEEEEEecC
Confidence 58999988 35678889988755432 23 5568999999983321100 11223334455677999999997
Q ss_pred CCCCCc------------------------------------------cHHH-HHHHHHHh-------------------
Q 031293 78 KWGVKP------------------------------------------RDHE-LISLMERS------------------- 95 (162)
Q Consensus 78 ~~~~~~------------------------------------------~~~~-~~~~l~~~------------------- 95 (162)
..+... .+.+ ....|++.
T Consensus 88 t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~ 167 (233)
T cd01896 88 TKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLI 167 (233)
T ss_pred CcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHH
Confidence 542210 0111 11122211
Q ss_pred --------CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhhcC
Q 031293 96 --------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 162 (162)
Q Consensus 96 --------~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~k~ 162 (162)
.+|+++|+||+|+.+..+.. .... ..+++++||.+|.|++++++.|.+.+...+|
T Consensus 168 ~~~~~~~~y~p~iiV~NK~Dl~~~~~~~-------~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~L~~irv 230 (233)
T cd01896 168 DVIEGNRVYIPCLYVYNKIDLISIEELD-------LLAR-----QPNSVVISAEKGLNLDELKERIWDKLGLIRV 230 (233)
T ss_pred HHHhCCceEeeEEEEEECccCCCHHHHH-------HHhc-----CCCEEEEcCCCCCCHHHHHHHHHHHhCcEEE
Confidence 25899999999998654432 1111 1378999999999999999999998876654
No 145
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.6e-13 Score=96.37 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=98.8
Q ss_pred eccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH
Q 031293 13 RTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI 89 (162)
Q Consensus 13 ~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~ 89 (162)
......|+|..... |.. ++.+..||+||| .+++++++.+..+.|..++|+.|.++..+++.+++
T Consensus 54 PeEk~rGITIntahveyet~~rhyahVDcPGH-------------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi 120 (394)
T COG0050 54 PEEKARGITINTAHVEYETANRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120 (394)
T ss_pred chHhhcCceeccceeEEecCCceEEeccCCCh-------------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh
Confidence 34556777764432 333 667999999999 99999999999999999999999999999999998
Q ss_pred HHHHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCC--CCCeEEeecCCC-CC-------HHHHHHHHHHh
Q 031293 90 SLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNSL--VQPVMMVSSKSG-AG-------IRSLRTVLSKI 156 (162)
Q Consensus 90 ~~l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~-~g-------~~~l~~~i~~~ 156 (162)
...+..+.| +++++||+|+++..+ .+......++++..++.. ..|++.-||+.. +| +.+|++++.+.
T Consensus 121 LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y 199 (394)
T COG0050 121 LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY 199 (394)
T ss_pred hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhc
Confidence 888888997 788999999997554 444456677777776532 457777776552 22 45555555543
No 146
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=7.2e-14 Score=98.87 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=91.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|+.. .++++.++.||.....-.. -.++++-|.||+-...... ..+-.++++..+.++.+++|+|
T Consensus 212 LL~als~A--KpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n------kGlG~~FLrHiER~~~l~fVvD 283 (366)
T KOG1489|consen 212 LLNALSRA--KPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN------KGLGYKFLRHIERCKGLLFVVD 283 (366)
T ss_pred HHHHhhcc--CCcccccceeeeccccceeeccccceeEeccCcccccccccc------CcccHHHHHHHHhhceEEEEEE
Confidence 57899988 5699999999986665333 3349999999984432111 2223345555566799999999
Q ss_pred cCCCCCc---cHHHHH-HHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 77 TKWGVKP---RDHELI-SLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 77 ~~~~~~~---~~~~~~-~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
.+.+... .+.+.+ .++.. ...|.++|+||+|+.+ ..+..++.+.+.+. . ..++++||++++|++
T Consensus 284 ~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e--ae~~~l~~L~~~lq---~--~~V~pvsA~~~egl~ 356 (366)
T KOG1489|consen 284 LSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE--AEKNLLSSLAKRLQ---N--PHVVPVSAKSGEGLE 356 (366)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh--HHHHHHHHHHHHcC---C--CcEEEeeeccccchH
Confidence 8765211 112221 22222 2578999999999852 22222233333322 1 369999999999999
Q ss_pred HHHHHHHHh
Q 031293 148 SLRTVLSKI 156 (162)
Q Consensus 148 ~l~~~i~~~ 156 (162)
+|+..|.+.
T Consensus 357 ~ll~~lr~~ 365 (366)
T KOG1489|consen 357 ELLNGLREL 365 (366)
T ss_pred HHHHHHhhc
Confidence 999998764
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.55 E-value=9.7e-14 Score=90.60 Aligned_cols=139 Identities=21% Similarity=0.188 Sum_probs=82.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++. . ...+..++++.+... +..+ ..+.++|+||+... ...+....+.+......+|.++.+.
T Consensus 17 l~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~~~~~~~i~~~d~~~~v~ 88 (161)
T TIGR00231 17 LLNRLLGN-K-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY------RAIRRLYYRAVESSLRVFDIVILVL 88 (161)
T ss_pred HHHHHhCC-C-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc------hHHHHHHHhhhhEEEEEEEEeeeeh
Confidence 57888888 3 556677777776655 3333 45889999997221 1112223444433334455555555
Q ss_pred ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
++..........+..... .+.|+++++||+|+...... ......+...+. .+++++||.+|.|+++++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~--~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 89 DVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLK----THVAFLFAKLNG--EPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhh----HHHHHHHhhccC--CceEEeecCCCCCHHHHHHHhh
Confidence 554432222222222222 27899999999999754311 222333333322 4799999999999999999875
No 148
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.55 E-value=1.5e-13 Score=91.42 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=69.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||. +.+......++ +.+|+++++.|+..+.+-.. ..++..+.. .+.|+++|.||+|
T Consensus 53 ~l~l~D~~g~----------~~~~~~~~~~~---~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~D 119 (167)
T cd01867 53 KLQIWDTAGQ----------ERFRTITTAYY---RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEeCCch----------HHHHHHHHHHh---CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 5789999997 22233344443 45699999999876432111 123333332 3579999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+..... .+...+.....+ .+++++||++|.|+++++.++.+.+
T Consensus 120 l~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 120 MEEKRVVS--KEEGEALADEYG---IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cccccCCC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 97432211 112223333222 4899999999999999999998765
No 149
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.55 E-value=3.9e-14 Score=94.58 Aligned_cols=136 Identities=19% Similarity=0.210 Sum_probs=78.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|.+. ......+..|.+...... .+..+.++|+||.. .+...+..++ ..++++++++|+.+.
T Consensus 30 Ll~~l~~~-~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~----------~~~~~~~~~~---~~~~~ii~v~D~~~~ 94 (173)
T cd04155 30 ILKQLASE-DISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR----------AIRPYWRNYF---ENTDCLIYVIDSADK 94 (173)
T ss_pred HHHHHhcC-CCcccCCCCCcceEEEEE-CCEEEEEEECCCCH----------HHHHHHHHHh---cCCCEEEEEEeCCCH
Confidence 46677766 333344444433222111 15568899999981 1223333443 456899999998753
Q ss_pred CC--ccHHHHHHHH---HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 81 VK--PRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 81 ~~--~~~~~~~~~l---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.. ....++...+ ...++|+++++||+|+.+.....+.. +.++. ...+.++++++||++|.|++++++||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~----~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 95 KRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIA----EALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred HHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHH----HHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 21 1111221222 22468999999999987543332222 22221 11223467899999999999999998
Q ss_pred HH
Q 031293 154 SK 155 (162)
Q Consensus 154 ~~ 155 (162)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 64
No 150
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.55 E-value=2.5e-13 Score=92.07 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=72.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--hCCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl 108 (162)
++.++||||. +.+..+...+++ .+|++++|.|...+.+-.. ..++..+.. .+.|+++|.||+|+
T Consensus 56 ~l~iwDt~G~----------~~~~~l~~~~~~---~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 56 KLQLWDTSGQ----------GRFCTIFRSYSR---GAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred EEEEEeCCCc----------HHHHHHHHHHhc---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 5789999999 333445555543 5599999999876432222 224444443 36899999999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.....+. .+..++.....+ .+++++||++|.|++++++++.+.+
T Consensus 123 ~~~~~v~--~~~~~~~a~~~~---~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 123 AFKRQVA--TEQAQAYAERNG---MTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred hhccCCC--HHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 6432221 122333344333 4899999999999999999998654
No 151
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.55 E-value=3.7e-14 Score=96.17 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=78.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|.+.. .....+..+.+. ..... +..+.++|+||+. .+......++ ..++++++|+|+.+
T Consensus 35 Li~~l~~~~-~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~----------~~~~~~~~~~---~~ad~iilV~D~~~ 98 (190)
T cd00879 35 LLHMLKDDR-LAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE----------QARRLWKDYF---PEVDGIVFLVDAAD 98 (190)
T ss_pred HHHHHhcCC-CcccCCccCcce--EEEEECCEEEEEEECCCCH----------HHHHHHHHHh---ccCCEEEEEEECCc
Confidence 466776652 222222222221 12222 4468899999981 1122333443 34599999999875
Q ss_pred CC--CccHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-------------CCCCCCeEEeecC
Q 031293 80 GV--KPRDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-------------NSLVQPVMMVSSK 141 (162)
Q Consensus 80 ~~--~~~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~Sa~ 141 (162)
.- .....++...+. ..+.|+++++||+|+......+ .+++.++.. .....+++++||+
T Consensus 99 ~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T cd00879 99 PERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEE----ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVV 174 (190)
T ss_pred HHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHH----HHHHHhCcccccccccccccccCceeEEEEEeEec
Confidence 31 111122222232 2358999999999986432222 233333211 1123578999999
Q ss_pred CCCCHHHHHHHHHHh
Q 031293 142 SGAGIRSLRTVLSKI 156 (162)
Q Consensus 142 ~~~g~~~l~~~i~~~ 156 (162)
+|+|+++++++|.+.
T Consensus 175 ~~~gv~e~~~~l~~~ 189 (190)
T cd00879 175 KRQGYGEAFRWLSQY 189 (190)
T ss_pred CCCChHHHHHHHHhh
Confidence 999999999999764
No 152
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.55 E-value=1.5e-13 Score=87.99 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC
Q 031293 17 KPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ 96 (162)
Q Consensus 17 ~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~ 96 (162)
....|+.+.++. .++||||-.... ..+....+.....+|.|+++.|+.++.......+... ..
T Consensus 27 ~~~KTq~i~~~~-----~~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~---f~ 89 (143)
T PF10662_consen 27 RYKKTQAIEYYD-----NTIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASM---FN 89 (143)
T ss_pred CcCccceeEecc-----cEEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcc---cC
Confidence 344566666442 469999952211 3445555555567899999999988665555455443 36
Q ss_pred CceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 97 TKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 97 ~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.|+|-|+||+|+. +....+ ..++.+...+. .+++.+|+.+|+|+++|.++|.+
T Consensus 90 ~pvIGVITK~Dl~~~~~~i~----~a~~~L~~aG~--~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 90 KPVIGVITKIDLPSDDANIE----RAKKWLKNAGV--KEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred CCEEEEEECccCccchhhHH----HHHHHHHHcCC--CCeEEEECCCCcCHHHHHHHHhC
Confidence 8999999999998 333333 44445555554 47899999999999999999864
No 153
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=5.3e-13 Score=91.08 Aligned_cols=152 Identities=11% Similarity=0.117 Sum_probs=98.6
Q ss_pred ChhcccCCCCceecc-CCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTS-DKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~-~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|+|+. ...++ ..++.|+....+. . +.++.++||||+++........ ...+.+.+.....+++++++|++
T Consensus 16 l~N~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~--~~~i~~~~~~~~~g~~~illVi~ 92 (196)
T cd01852 16 TGNTILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQL--SKEIVRCLSLSAPGPHAFLLVVP 92 (196)
T ss_pred HHHHhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHH--HHHHHHHHHhcCCCCEEEEEEEE
Confidence 589999984 44333 3567777655432 2 6679999999998764322111 12233333334567899999999
Q ss_pred cCCCCCccHHHHHHHHHHh-C----CceEEEEeccCCCCcHHHHHHH----HHHHHHHHhcCCCCCCeEEee-----cCC
Q 031293 77 TKWGVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQPVMMVS-----SKS 142 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~S-----a~~ 142 (162)
+.. ++..+...++.+.+. + .++++++|+.|.+.....++.+ ..++..+...+. .++.++ +..
T Consensus 93 ~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~---r~~~f~~~~~~~~~ 168 (196)
T cd01852 93 LGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG---RYVAFNNKAKGEEQ 168 (196)
T ss_pred CCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC---eEEEEeCCCCcchh
Confidence 987 777777777777653 2 5789999999987544333221 344445554443 333443 566
Q ss_pred CCCHHHHHHHHHHhhhh
Q 031293 143 GAGIRSLRTVLSKIARF 159 (162)
Q Consensus 143 ~~g~~~l~~~i~~~~~~ 159 (162)
+.++++|++.|.+.++.
T Consensus 169 ~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 169 EQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88899999999987764
No 154
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.54 E-value=3e-13 Score=92.46 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=70.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH--hCCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER--SQTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~--~~~~~ivv~nK~Dl 108 (162)
++.+|||||. +.+..+...|++ +++++++|+|.....+-... .+...+.. .++|+++|.||+|+
T Consensus 45 ~l~iwDt~G~----------e~~~~l~~~~~~---~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 45 RFNVWDTAGQ----------EKFGGLRDGYYI---QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEEECCCc----------hhhhhhhHHHhc---CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 5889999999 333444555544 45899999998765322222 23444443 36899999999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.......+ .. +..... ..+++++||++|.|+++++.+|...+
T Consensus 112 ~~~~v~~~---~~-~~~~~~---~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 112 KDRKVKAK---SI-TFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred ccccCCHH---HH-HHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53221111 11 122222 25899999999999999999998755
No 155
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=1.1e-13 Score=93.43 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+..+.++||||. +.+......+++ .+|++++|+|+.+.- .....++.+.+.. .+.|+++|+|
T Consensus 60 ~~~~~l~D~~G~----------~~~~~~~~~~~~---~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 60 NLKFTMWDVGGQ----------DKLRPLWRHYYQ---NTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred CEEEEEEECCCC----------HhHHHHHHHHhc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 345899999998 222334444543 459999999987532 2222223333332 2578999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|.|+.+.....+ +...++.. ..+.+.++++||++|.|+++++++|.+.+
T Consensus 127 K~Dl~~~~~~~~----i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 127 KQDLPNAMSTTE----VTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCCCCCCHHH----HHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 999864322221 22222221 11223567899999999999999998755
No 156
>PLN03110 Rab GTPase; Provisional
Probab=99.54 E-value=2.8e-13 Score=93.77 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=70.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.+|||||. +.+......+++ .++++++++|+....+-.. ..++..+.. .++|+++|.||+|
T Consensus 62 ~l~l~Dt~G~----------~~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D 128 (216)
T PLN03110 62 KAQIWDTAGQ----------ERYRAITSAYYR---GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEECCCc----------HHHHHHHHHHhC---CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChh
Confidence 5889999998 333444444543 4699999999876432222 123333433 3689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+........ +..+...... ..+++++||++|.|++++++++.+.+.
T Consensus 129 l~~~~~~~~--~~~~~l~~~~---~~~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 129 LNHLRSVAE--EDGQALAEKE---GLSFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred cccccCCCH--HHHHHHHHHc---CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 864332211 1122222222 258999999999999999999977553
No 157
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.53 E-value=3.7e-13 Score=92.07 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=69.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
.+.++||||. +.+......++ +.++++++|+|+.++.+-.. ..++..+... ..|+++|+||+|+
T Consensus 56 ~l~l~D~~G~----------~~~~~~~~~~~---~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 56 KLQIWDTAGQ----------ERFRTITSTYY---RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEeCCCc----------hhHHHHHHHHh---CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 4789999998 22233444454 34589999999876432111 1233333332 4789999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
....... .+.........+ .+++++||++|.|+++++.+|...+
T Consensus 123 ~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 123 PERKVVE--TEDAYKFAGQMG---ISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ccccccC--HHHHHHHHHHcC---CEEEEEECCCCcCHHHHHHHHHHHH
Confidence 7543221 112222333332 5899999999999999999998755
No 158
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-13 Score=104.16 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=97.3
Q ss_pred eccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CC
Q 031293 13 RTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VK 82 (162)
Q Consensus 13 ~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~ 82 (162)
+.+...|+|.++....+ ...++++|+||| ..|+.+++.+...+|..++|+|++.+ ..
T Consensus 234 ~eERerGvTm~v~~~~fes~~~~~tliDaPGh-------------kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~ 300 (603)
T KOG0458|consen 234 KEERERGVTMDVKTTWFESKSKIVTLIDAPGH-------------KDFIPNMISGASQADVAVLVVDASTGEFESGFDPG 300 (603)
T ss_pred hhhhhcceeEEeeeEEEecCceeEEEecCCCc-------------cccchhhhccccccceEEEEEECCcchhhhccCCC
Confidence 45667888887776444 335999999999 88999999999999999999998642 35
Q ss_pred ccHHHHHHHHHHhCCc-eEEEEeccCCC--CcHHHHHHHHHHHHHH-HhcCC--CCCCeEEeecCCCCCHHH
Q 031293 83 PRDHELISLMERSQTK-YQVVLTKTDTV--FPIDVARRAMQIEESL-KANNS--LVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 83 ~~~~~~~~~l~~~~~~-~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~Sa~~~~g~~~ 148 (162)
.+..+++..++.+++. ++|++||+|++ ++...+++...+..++ ...+. ..+.++|+|+..|+|+-+
T Consensus 301 gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 301 GQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred CchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 6677888888888876 89999999999 4556677777777777 43333 335899999999999764
No 159
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.53 E-value=7.9e-14 Score=92.27 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=67.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++||||+. .+..+...++. .+++++++.|+..+.+-.. ..+...+.. .+.|+++|.||+
T Consensus 49 ~l~i~Dt~g~~----------~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 49 LLDILDTAGQE----------EFSAMRDQYMR---TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEECCCcc----------cchHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 47799999982 22333444443 3489999999875322111 112222222 258999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+...... +...+.....+ .+++++||++|.|+++++++|.+.+.
T Consensus 116 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 116 DLESERVVST--EEGKELARQWG---CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cccccceEcH--HHHHHHHHHcC---CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 9875322111 12222233222 58999999999999999999987653
No 160
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=3.7e-13 Score=95.81 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=91.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeCC-ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT-KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~-~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+++|++. ...+.++|.||..++. +..+. ++.++||||+=+-. .+.+...+..--.+++.. .++|+|++|+
T Consensus 184 lv~~lT~A--kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP--l~ErN~IE~qAi~AL~hl--~~~IlF~~D~ 257 (346)
T COG1084 184 LVRKLTTA--KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP--LEERNEIERQAILALRHL--AGVILFLFDP 257 (346)
T ss_pred HHHHHhcC--CCccCCCCccccceeEeeeecCCceEEEecCCcccCCC--hHHhcHHHHHHHHHHHHh--cCeEEEEEcC
Confidence 46788888 5679999999997765 44333 69999999983321 222222222222233333 4899999999
Q ss_pred CCC--CCccH-HHHHHHHHH-hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWG--VKPRD-HELISLMER-SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~--~~~~~-~~~~~~l~~-~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
++. .+... ..++..++. .+.|+++|+||+|..+....++....+ ...+. .....+++..+.+.+.+...+
T Consensus 258 Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~d~~~~~v 331 (346)
T COG1084 258 SETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASV----LEEGG--EEPLKISATKGCGLDKLREEV 331 (346)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHH----Hhhcc--ccccceeeeehhhHHHHHHHH
Confidence 763 33222 234455544 357899999999998776665544332 22221 245678888999999888777
Q ss_pred HHh
Q 031293 154 SKI 156 (162)
Q Consensus 154 ~~~ 156 (162)
...
T Consensus 332 ~~~ 334 (346)
T COG1084 332 RKT 334 (346)
T ss_pred HHH
Confidence 654
No 161
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.52 E-value=6.1e-14 Score=87.88 Aligned_cols=99 Identities=19% Similarity=0.340 Sum_probs=72.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..+++|+..... .. +..+.++||||+........ +......+++....+|++++|+|+
T Consensus 15 lin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~----~~~~~~~~~~~~~~~d~ii~vv~~ 89 (116)
T PF01926_consen 15 LINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN----DGKEIRKFLEQISKSDLIIYVVDA 89 (116)
T ss_dssp HHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH----HHHHHHHHHHHHCTESEEEEEEET
T ss_pred HHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH----HHHHHHHHHHHHHHCCEEEEEEEC
Confidence 68999997 578899999999988442 33 44579999999965422111 112344555555677999999998
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEec
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK 105 (162)
..+....+.+++++++ .+.|+++|+||
T Consensus 90 ~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 90 SNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 8754555667778886 78999999998
No 162
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.52 E-value=2e-13 Score=90.14 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=67.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||.. .+..+...+++ .+++++++.|.....+-.. ..+...+.. .++|+++|+||+
T Consensus 50 ~l~i~Dt~G~~----------~~~~~~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 116 (163)
T cd04136 50 MLEILDTAGTE----------QFTAMRDLYIK---NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKC 116 (163)
T ss_pred EEEEEECCCcc----------ccchHHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 46789999982 22333444443 4589999999865422111 122333332 258999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ +.........+ .+++++||++|.|+++++.++.+.+
T Consensus 117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 117 DLEDERVVSR--EEGQALARQWG---CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cccccceecH--HHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 9864332211 11222222222 5899999999999999999998653
No 163
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.52 E-value=7.1e-13 Score=90.57 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=68.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH------HhCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME------RSQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~------~~~~~~ivv~n 104 (162)
++.++||||....... ...+ +... .......+|++++|+|+..+.+-.. ..+.+.+. ..++|+++|.|
T Consensus 50 ~l~i~Dt~G~~~~~~~-~~~e-~~~~---~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 50 DLHILDVPNMQRYPGT-AGQE-WMDP---RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred EEEEEeCCCcccCCcc-chhH-HHHH---HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 4779999997432111 1111 1111 1222356799999999976432221 12223222 13589999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+|+........ +..+...... ...+++++||++|.|++++++.+...+
T Consensus 125 K~Dl~~~~~~~~--~~~~~~~~~~--~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 125 KRDQQRHRFAPR--HVLSVLVRKS--WKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred CccccccccccH--HHHHHHHHHh--cCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 999964322211 1222222211 125899999999999999999987643
No 164
>PRK12739 elongation factor G; Reviewed
Probab=99.52 E-value=2.1e-13 Score=108.58 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=68.2
Q ss_pred CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293 16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 92 (162)
Q Consensus 16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l 92 (162)
..+|+|.+.....+ +.++.++||||+ .++..+...+.+.+|++++|+|+.+++..++..++..+
T Consensus 55 ~~rgiti~~~~~~~~~~~~~i~liDTPG~-------------~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~ 121 (691)
T PRK12739 55 QERGITITSAATTCFWKGHRINIIDTPGH-------------VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQA 121 (691)
T ss_pred hhcCCCccceeEEEEECCEEEEEEcCCCH-------------HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 36788876654333 667999999999 55666677777788999999999999988888888888
Q ss_pred HHhCCceEEEEeccCCCCc
Q 031293 93 ERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 93 ~~~~~~~ivv~nK~Dl~~~ 111 (162)
...++|+++++||+|+...
T Consensus 122 ~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 122 DKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHcCCCEEEEEECCCCCCC
Confidence 8889999999999999843
No 165
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.52 E-value=3.7e-13 Score=93.25 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=54.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
..+.++||||+ ..+........+.+|++++|+|+.++....+..++..+...++|+++|+||+|+.
T Consensus 73 ~~i~iiDTPG~-------------~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGH-------------VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCc-------------cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 45889999999 4555555666677899999999999888888778777777789999999999975
No 166
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.52 E-value=4.7e-13 Score=92.62 Aligned_cols=108 Identities=20% Similarity=0.201 Sum_probs=69.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh------CCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS------QTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~------~~~~ivv~n 104 (162)
.+.++||||. +.+..+...++ +.+|++++|+|...+-+-.. ..+...+... +.|+++|.|
T Consensus 51 ~~~i~Dt~G~----------~~~~~l~~~~~---~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 51 TLQVWDIGGQ----------SIGGKMLDKYI---YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred EEEEEECCCc----------HHHHHHHHHHh---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence 4789999998 22344455554 34699999999876422222 1233333322 357899999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+|+........ +..++.....+ .+++++||++|.|++++++++.+.+
T Consensus 118 K~DL~~~~~v~~--~~~~~~~~~~~---~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 118 KTDLEHNRTVKD--DKHARFAQANG---MESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred CcccccccccCH--HHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999974322211 12223333333 4789999999999999999998765
No 167
>PTZ00099 rab6; Provisional
Probab=99.52 E-value=1.7e-13 Score=91.92 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=70.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHH-HH--hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLM-ER--SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l-~~--~~~~~ivv~nK~ 106 (162)
++.+|||||+ +.+..+...++ +.+|++++|.|...+. .... .++..+ .. .+.|+++|.||+
T Consensus 30 ~l~iwDt~G~----------e~~~~~~~~~~---~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~~~~~piilVgNK~ 95 (176)
T PTZ00099 30 RLQLWDTAGQ----------ERFRSLIPSYI---RDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKT 95 (176)
T ss_pred EEEEEECCCh----------HHhhhccHHHh---CCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECc
Confidence 5889999999 23344455554 4569999999987642 2222 233333 32 247889999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+...+.. +.........+ ..++++||++|.|+++++++|.+.+.
T Consensus 96 DL~~~~~v~~--~e~~~~~~~~~---~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 96 DLGDLRKVTY--EEGMQKAQEYN---TMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred ccccccCCCH--HHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9964322111 11222223232 36889999999999999999998764
No 168
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.52 E-value=4.2e-13 Score=87.85 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=78.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++.. .. ....|....+...... +..+.++|+||+ ..+......++ ..+|++++|+|+..
T Consensus 15 l~~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~---~~~d~ii~v~d~~~ 79 (159)
T cd04159 15 LVNVIAGGQ-FS-EDTIPTVGFNMRKVTKGNVTLKVWDLGGQ----------PRFRSMWERYC---RGVNAIVYVVDAAD 79 (159)
T ss_pred HHHHHccCC-CC-cCccCCCCcceEEEEECCEEEEEEECCCC----------HhHHHHHHHHH---hcCCEEEEEEECCC
Confidence 467777762 22 2223322222222222 335889999998 22233344443 34599999999875
Q ss_pred CCCc--cHHHHHHHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 80 GVKP--RDHELISLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 80 ~~~~--~~~~~~~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
...- ...++...+. ..++|+++|+||+|+.+.....+..+.+. +........+++++|+++|.|+++++.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN--LKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhC--cccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 3211 1111222222 13689999999999875433222221211 111112235789999999999999999987
Q ss_pred H
Q 031293 155 K 155 (162)
Q Consensus 155 ~ 155 (162)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 169
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.51 E-value=2.7e-13 Score=89.96 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=66.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n 104 (162)
.+.++||||... +..+...++ ..++++++|.|.....+-.. ..++..+.. .++|+++|.|
T Consensus 50 ~l~i~Dt~G~~~----------~~~~~~~~~---~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 50 TLQITDTTGSHQ----------FPAMQRLSI---SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEECCCCCc----------chHHHHHHh---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 478999999822 122233333 34589999999876432211 223333433 3589999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
|+|+....++.. +......... ..+++++||++|.|+++++++|.+.
T Consensus 117 K~Dl~~~~~v~~--~~~~~~~~~~---~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 117 KCDESHKREVSS--NEGAACATEW---NCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CccccccCeecH--HHHHHHHHHh---CCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999965222211 1111122222 2488999999999999999998753
No 170
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.51 E-value=2e-13 Score=90.42 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=67.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~ 106 (162)
.+.++||||. +.+..+...+++. +|+++++.|.....+-.. ..++..+. ..+.|+++|+||+
T Consensus 50 ~l~i~Dt~G~----------~~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 116 (164)
T cd04175 50 MLEILDTAGT----------EQFTAMRDLYMKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 116 (164)
T ss_pred EEEEEECCCc----------ccchhHHHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 4679999998 2234444555443 489999999765322111 12233322 1358999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ +...+.....+ .+++++||++|.|+++++.++.+.+
T Consensus 117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 117 DLEDERVVGK--EQGQNLARQWG---CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred cchhccEEcH--HHHHHHHHHhC---CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9964322111 11122222222 4899999999999999999998755
No 171
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.51 E-value=4.7e-13 Score=90.88 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=68.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n 104 (162)
.+.+|||||. +.+..+...++. .+|++++|.|.....+-.. ..++..+.. .++|+++|+|
T Consensus 48 ~l~i~Dt~G~----------~~~~~~~~~~~~---~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 48 MLEVLDTAGQ----------EEYTALRDQWIR---EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred EEEEEECCCc----------hhhHHHHHHHHH---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 3789999998 222333444443 4599999999865432111 223333322 3579999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+|+........ +...+.....+ .+++++||++|.|+++++.++.+.+
T Consensus 115 K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 115 KCDKVYEREVST--EEGAALARRLG---CEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred ChhccccCccCH--HHHHHHHHHhC---CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 999964332211 11222222222 4799999999999999999998754
No 172
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.51 E-value=3.3e-13 Score=89.11 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH---hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER---SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~---~~~~~ivv~nK~ 106 (162)
.+.++||||+ +.+......+++ .++++++++|...+-+ ....++..+... .++|+++|+||+
T Consensus 49 ~~~i~D~~g~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 49 QLNILDTAGQ----------EDYAAIRDNYHR---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEECCCh----------hhhhHHHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 4889999998 222334444443 4488888888765321 112222223332 469999999999
Q ss_pred CCCCcH-HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.... .... .........+ .+++++||++|.|+++++.++.+.+.
T Consensus 116 D~~~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 116 DLEDKRQVSSE---EAANLARQWG---VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccccccccCHH---HHHHHHHHhC---CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 997522 1111 1222222222 48999999999999999999987653
No 173
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.51 E-value=4.7e-13 Score=89.00 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=67.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh--CCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
.+.++||||... +..+...++ ..+|++++|+|...+.+-... .++..+... ++|+++|.||+|+
T Consensus 50 ~l~i~Dt~G~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 50 RFNVWDTAGQEK----------FGGLRDGYY---IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred EEEEEECCCChh----------hccccHHHh---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence 588999999822 122223333 346999999998764322222 233334322 6999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.... .... ..+.... ...+++++||++|.|+++++.+|.+.+
T Consensus 117 ~~~~-~~~~---~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 117 KDRK-VKAK---QITFHRK---KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred cccc-CCHH---HHHHHHH---cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 7322 1111 1112222 235899999999999999999998755
No 174
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=3.7e-13 Score=93.81 Aligned_cols=150 Identities=25% Similarity=0.254 Sum_probs=96.4
Q ss_pred ChhcccCCCCceeccCCCCcc----eEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLT----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t----~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|||+|++. +...++..+-.| +....+. +..+++|||||+|+....+ ..+...+.+++.+ .|+++++++
T Consensus 55 liNALF~~-~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D---~~~r~~~~d~l~~---~DLvL~l~~ 126 (296)
T COG3596 55 LINALFQG-EVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD---AEHRQLYRDYLPK---LDLVLWLIK 126 (296)
T ss_pred HHHHHHhc-cCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh---HHHHHHHHHHhhh---ccEEEEecc
Confidence 68999976 456666554333 2333333 3569999999998864322 1223444455444 499999999
Q ss_pred cCCCCCccHHHHHHHHHH--hCCceEEEEeccCCCCcH-HH--------HHHHHHHHHH---HHhcCCCCCCeEEeecCC
Q 031293 77 TKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPI-DV--------ARRAMQIEES---LKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~--~~~~~ivv~nK~Dl~~~~-~~--------~~~~~~~~~~---~~~~~~~~~~i~~~Sa~~ 142 (162)
+.++.-..+..++..+.. .+.|+++++|.+|...+. ++ ..+.+.+++. +.......-|++..|...
T Consensus 127 ~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~ 206 (296)
T COG3596 127 ADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRL 206 (296)
T ss_pred CCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEecccc
Confidence 988776777776654432 247899999999976442 11 1222222221 222222345888888899
Q ss_pred CCCHHHHHHHHHHhhh
Q 031293 143 GAGIRSLRTVLSKIAR 158 (162)
Q Consensus 143 ~~g~~~l~~~i~~~~~ 158 (162)
+.|++++..++.++++
T Consensus 207 ~wgl~~l~~ali~~lp 222 (296)
T COG3596 207 PWGLKELVRALITALP 222 (296)
T ss_pred CccHHHHHHHHHHhCc
Confidence 9999999999998776
No 175
>PTZ00369 Ras-like protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=92.52 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=67.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||+. .+..+...++. .++++++|.|+..+-+-.. ..+...+.. .++|+++|.||+
T Consensus 54 ~l~i~Dt~G~~----------~~~~l~~~~~~---~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 54 LLDILDTAGQE----------EYSAMRDQYMR---TGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEeCCCCc----------cchhhHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 47799999982 22444444543 4599999999876432111 122222221 267999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ +...+.....+ .+++++||++|.|+++++.+|.+.+
T Consensus 121 Dl~~~~~i~~--~~~~~~~~~~~---~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 121 DLDSERQVST--GEGQELAKSFG---IPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred ccccccccCH--HHHHHHHHHhC---CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9864322211 11122222222 4899999999999999999998654
No 176
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.50 E-value=1.1e-12 Score=87.35 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=66.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHH------HhCCceEEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLME------RSQTKYQVVL 103 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~------~~~~~~ivv~ 103 (162)
++.++||||+ +.+..+...+++ .+|+++++.|...+- .....+....+. ..++|+++|+
T Consensus 55 ~l~i~D~~G~----------~~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 55 TLQIWDTAGQ----------ERFRSLRTPFYR---GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred EEEEEeCCCh----------HHHHHhHHHHhc---CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 4779999998 333444555543 458888888876432 221111111221 1257999999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
||+|+....... +.+++.+...+ ..+++++||++|.|++++++.+.+.
T Consensus 122 nK~Dl~~~~~~~---~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 122 NKNDIPERQVST---EEAQAWCRENG--DYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECccccccccCH---HHHHHHHHHCC--CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 999986322111 23333344333 2489999999999999999998754
No 177
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.50 E-value=6.9e-13 Score=90.16 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=68.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
.+.+|||||.. .+..+...++ +.+|++++|+|.....+-.. ..++..+... +.|+++|+||+|+
T Consensus 51 ~l~i~D~~G~~----------~~~~~~~~~~---~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl 117 (193)
T cd04118 51 TLGIWDTAGSE----------RYEAMSRIYY---RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred EEEEEECCCch----------hhhhhhHhhc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccc
Confidence 36799999982 2233333333 34699999999876422111 2244444433 5899999999998
Q ss_pred CCcHHH--HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDV--ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
...... ....+.+.+.....+ .+++++||++|.|++++++++.+.+
T Consensus 118 ~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 118 IEQDRSLRQVDFHDVQDFADEIK---AQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred cccccccCccCHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 643211 000122333333222 4789999999999999999998755
No 178
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.50 E-value=2.2e-12 Score=87.01 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=67.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D 107 (162)
.+.+|||+|. +.+..+...+ .+.+|++++|.|..+..+-... .++..+.. ...| ++|.||+|
T Consensus 50 ~l~iwDt~G~----------~~~~~~~~~~---~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~D 115 (182)
T cd04128 50 TFSIWDLGGQ----------REFINMLPLV---CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYD 115 (182)
T ss_pred EEEEEeCCCc----------hhHHHhhHHH---CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchh
Confidence 4889999998 2223333333 3456999999998764322221 23333433 2355 67899999
Q ss_pred CCCc---HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFP---IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+... .......+..++.....+ .+++++||++|.|+++++.++.+.+.
T Consensus 116 l~~~~~~~~~~~~~~~~~~~a~~~~---~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 116 LFADLPPEEQEEITKQARKYAKAMK---APLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred ccccccchhhhhhHHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9621 111111223333333333 48999999999999999999987553
No 179
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.49 E-value=7.1e-13 Score=87.26 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=68.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~---~~~~ivv~nK~D 107 (162)
.+.++|+||. +.+......++ ..+|++++|+|+.++.+-... .++..+... ++|+++|+||+|
T Consensus 50 ~~~~~D~~g~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 116 (162)
T cd04123 50 DLAIWDTAGQ----------ERYHALGPIYY---RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116 (162)
T ss_pred EEEEEECCch----------HHHHHhhHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 4889999997 22233333333 346999999998764322111 222333322 589999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+........ +.+.+.....+ .+++++||+++.|+++++.++.+.+
T Consensus 117 ~~~~~~~~~--~~~~~~~~~~~---~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 117 LERQRVVSK--SEAEEYAKSVG---AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cccccCCCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 874332211 12223333332 4789999999999999999997653
No 180
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.49 E-value=6.8e-13 Score=88.73 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=70.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||. +.+..+...++. .+|++++|.|..++.+-... ++...+.. .++|+++|.||+
T Consensus 51 ~l~i~Dt~G~----------~~~~~l~~~~~~---~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~ 117 (172)
T cd04141 51 LLDILDTAGQ----------AEFTAMRDQYMR---CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKV 117 (172)
T ss_pred EEEEEeCCCc----------hhhHHHhHHHhh---cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 4889999998 223444555544 45999999998765433222 22233332 358999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+.+...+.. +...+.....+ .+++++||++|.|++++++++.+.+
T Consensus 118 Dl~~~~~v~~--~~~~~~a~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 118 DLESQRQVTT--EEGRNLAREFN---CPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred hhhhcCccCH--HHHHHHHHHhC---CEEEEEecCCCCCHHHHHHHHHHHH
Confidence 9864332211 12222333332 4899999999999999999998654
No 181
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.49 E-value=4.9e-13 Score=91.36 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=67.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++|+||+. .+..+...+ ...+|++++|+|+.++.+-... .++..+.. .++|+++|+||+
T Consensus 48 ~l~i~D~~G~~----------~~~~~~~~~---~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 114 (198)
T cd04147 48 TLDILDTSGSY----------SFPAMRKLS---IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKA 114 (198)
T ss_pred EEEEEECCCch----------hhhHHHHHH---hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcc
Confidence 58899999981 122222333 2456999999998764222111 12222222 368999999999
Q ss_pred CCCCc-HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFP-IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+... ..... +...+..... ...+++++||++|.|++++++++.+.+.
T Consensus 115 Dl~~~~~~v~~--~~~~~~~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 115 DSLEEERQVPA--KDALSTVELD--WNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccccccccH--HHHHHHHHhh--cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 98752 21111 1111122111 1147899999999999999999987654
No 182
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.49 E-value=1.3e-12 Score=88.46 Aligned_cols=138 Identities=19% Similarity=0.176 Sum_probs=79.3
Q ss_pred ChhcccCCCCcee-ccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVR-TSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~-~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|++.+. .... ..+..|.+........+. .+.++||||. +.+......++ +.+|++++|.|
T Consensus 16 li~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~----------~~~~~~~~~~~---~~~d~iilv~d 81 (188)
T cd04125 16 LLKRFTED-EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ----------ERFRSLNNSYY---RGAHGYLLVYD 81 (188)
T ss_pred HHHHHhcC-CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHhhHHHHc---cCCCEEEEEEE
Confidence 46777666 2221 233333333223333322 4679999998 22233333343 45699999999
Q ss_pred cCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
...+-+-.. ..++..+.. ...|+++++||+|+.+...... +.........+ .+++++||++|.|+++++.+
T Consensus 82 ~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 82 VTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS--NIAKSFCDSLN---IPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHH
Confidence 876422111 113333332 2478999999999874332211 11112222222 38999999999999999999
Q ss_pred HHHhh
Q 031293 153 LSKIA 157 (162)
Q Consensus 153 i~~~~ 157 (162)
+.+.+
T Consensus 157 l~~~~ 161 (188)
T cd04125 157 LVKLI 161 (188)
T ss_pred HHHHH
Confidence 98765
No 183
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.48 E-value=2.5e-13 Score=90.14 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHH-HHHHH-hCCceEEEEecc
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELI-SLMER-SQTKYQVVLTKT 106 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~-~~l~~-~~~~~ivv~nK~ 106 (162)
+.++.++||||... +......++ +++|++++|+|+....+-. ...++ ..+.. .++|+++|.||+
T Consensus 43 ~~~l~i~Dt~G~~~----------~~~~~~~~~---~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~ 109 (164)
T cd04162 43 DAIMELLEIGGSQN----------LRKYWKRYL---SGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQ 109 (164)
T ss_pred CeEEEEEECCCCcc----------hhHHHHHHH---hhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCc
Confidence 44689999999822 133333443 3459999999987643111 11122 22222 468999999999
Q ss_pred CCCCcHHHHHHHHHH--HHHHHhcCCCCCCeEEeecCC------CCCHHHHHHHHHH
Q 031293 107 DTVFPIDVARRAMQI--EESLKANNSLVQPVMMVSSKS------GAGIRSLRTVLSK 155 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~Sa~~------~~g~~~l~~~i~~ 155 (162)
|+......+...+.. ...... ..++++++||++ ++|+.++++.+.+
T Consensus 110 Dl~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 110 DLPAARSVQEIHKELELEPIARG---RRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCcCCCCHHHHHHHhCChhhcCC---CceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 987544333222121 111111 235788899888 9999999988764
No 184
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.48 E-value=1.2e-12 Score=86.61 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=69.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
++.++||||. +.+..+...++ ..+|++++|+|.+...+-.. ..++..+... ++|+++|+||+|+
T Consensus 53 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 53 ELFIFDSAGQ----------ELYSDMVSNYW---ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEECCCH----------HHHHHHHHHHh---CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 5889999998 33344444444 45699999999876422111 2233444333 5899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.+....... ..+......+ .+++++||++|.|++++++.+.+.+
T Consensus 120 ~~~~~~~~~--~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 120 ADKAEVTDA--QAQAFAQANQ---LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ccccCCCHH--HHHHHHHHcC---CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 654322211 1111222222 4789999999999999999998754
No 185
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.48 E-value=7e-13 Score=91.98 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=68.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH--hCCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER--SQTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl 108 (162)
++.+|||||.. .+..+...++ +.++++++|+|.....+-.. ..++..+.. .++|+++|.||+|+
T Consensus 63 ~l~i~Dt~G~~----------~~~~~~~~~~---~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 63 RFYCWDTAGQE----------KFGGLRDGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred EEEEEECCCch----------hhhhhhHHHc---ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhh
Confidence 58899999982 2233344443 34589999999876432222 123333332 35899999999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.......+ .+ +..... ..+++++||++|.|+++++.+|.+.+
T Consensus 130 ~~~~v~~~---~~-~~~~~~---~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 130 KNRQVKAK---QV-TFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred hhccCCHH---HH-HHHHhc---CCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 53221111 11 222222 25889999999999999999998655
No 186
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=1.1e-12 Score=87.11 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=67.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
.+.++|+||+ +.+......++ ..+|++++++|+..+.+... ..++..+.. .+.|+++|+||+|
T Consensus 57 ~~~~~D~~g~----------~~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D 123 (169)
T cd04114 57 KLQIWDTAGQ----------ERFRSITQSYY---RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123 (169)
T ss_pred EEEEEECCCc----------HHHHHHHHHHh---cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 4788999998 22233334443 34699999999875422111 123333332 3588999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+..+.... ..+.+..... .+++++||++|.|+++++.+|.+.
T Consensus 124 ~~~~~~i~~~---~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 124 LAERREVSQQ---RAEEFSDAQD--MYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cccccccCHH---HHHHHHHHcC--CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 8754332211 1111222211 589999999999999999999864
No 187
>PRK00007 elongation factor G; Reviewed
Probab=99.47 E-value=3.8e-13 Score=107.10 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=85.4
Q ss_pred CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293 16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 92 (162)
Q Consensus 16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l 92 (162)
..+|+|.+.....+ +.++.++||||+ ..+..+...+.+.+|++++|+|+.+++..++..++..+
T Consensus 57 ~~rg~ti~~~~~~~~~~~~~~~liDTPG~-------------~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~ 123 (693)
T PRK00007 57 QERGITITSAATTCFWKDHRINIIDTPGH-------------VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQA 123 (693)
T ss_pred HhCCCCEeccEEEEEECCeEEEEEeCCCc-------------HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHH
Confidence 46788876554322 667999999999 55666677777788999999999999999999999999
Q ss_pred HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293 93 ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 93 ~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~ 143 (162)
...++|.++++||+|+.... .....+.+++.+.... ....+++|+..+
T Consensus 124 ~~~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~--~~~~ipisa~~~ 171 (693)
T PRK00007 124 DKYKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANP--VPIQLPIGAEDD 171 (693)
T ss_pred HHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCe--eeEEecCccCCc
Confidence 98999999999999998544 4455566666655321 245667777665
No 188
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.47 E-value=5.9e-13 Score=88.55 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=68.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ......+ .+.+|++++++|+..+.+- ....++..+... ++|+++|+||+|
T Consensus 49 ~l~~~D~~g~~~~----------~~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (171)
T cd00157 49 NLGLWDTAGQEEY----------DRLRPLS---YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKID 115 (171)
T ss_pred EEEEEeCCCcccc----------cccchhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHH
Confidence 4889999998321 1112222 2456999999998763221 122234444333 499999999999
Q ss_pred CCCcHHHHH---------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 108 TVFPIDVAR---------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 108 l~~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+........ ..+...+.....+ ..+++++||++|.|+++++.+|.+
T Consensus 116 l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 116 LRDDENTLKKLEKGKEPITPEEGEKLAKEIG--AIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhchhhhhhcccCCCccCHHHHHHHHHHhC--CeEEEEeecCCCCCHHHHHHHHhh
Confidence 975543211 0122223333332 248999999999999999999875
No 189
>PLN03108 Rab family protein; Provisional
Probab=99.46 E-value=2.7e-12 Score=88.54 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=67.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~D 107 (162)
.+.++||||. +.+......++ +.+|++++|.|+....+-... .++..+.. .++|+++|.||+|
T Consensus 56 ~l~l~Dt~G~----------~~~~~~~~~~~---~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~D 122 (210)
T PLN03108 56 KLQIWDTAGQ----------ESFRSITRSYY---RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (210)
T ss_pred EEEEEeCCCc----------HHHHHHHHHHh---ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 4789999998 22233333443 346999999998764322221 22322222 2589999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+..... .+..++.....+ .+++++||+++.|+++++.++...+
T Consensus 123 l~~~~~~~--~~~~~~~~~~~~---~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 123 LAHRRAVS--TEEGEQFAKEHG---LIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred CccccCCC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 87532211 112223333332 4899999999999999998887644
No 190
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.6e-13 Score=94.63 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=97.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-CCccHHHHHHHHHHhCC-ceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-VKPRDHELISLMERSQT-KYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-~~~~~~~~~~~l~~~~~-~~ivv~nK~D 107 (162)
-+.+.+||+||| ..++..++.+....|.+++++.++++ +++++.+++..+.-+.. .++++.||+|
T Consensus 124 vRHVSfVDCPGH-------------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiD 190 (466)
T KOG0466|consen 124 VRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKID 190 (466)
T ss_pred EEEEEeccCCch-------------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhh
Confidence 345899999999 78888898888888999999999875 45677778776665553 4899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
++.++...++.+.+.+++........|++++||.-+.+++.+.++|...++
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 998888888888888888877666789999999999999999999987653
No 191
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.46 E-value=1.5e-12 Score=90.17 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=68.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEecc
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKT 106 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~ 106 (162)
.++.+|||||+. .+..+...++ +.++++++|+|.....+-.. .++...... .++|+++|.||+
T Consensus 44 ~~l~iwDt~G~e----------~~~~l~~~~~---~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGRE----------QFHGLGSMYC---RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEEeCCCcc----------cchhhHHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 348899999982 2233344443 35699999999876432222 222222222 257899999999
Q ss_pred CCCCcH-----------------HHHHHHHHHHHHHHhcC-----------CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPI-----------------DVARRAMQIEESLKANN-----------SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~-----------------~~~~~~~~~~~~~~~~~-----------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+.... ...-..+...+.....+ ....+++++||++|.|+++++..+.+.+
T Consensus 111 DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 111 DLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred ccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 996410 00000112222222221 1125799999999999999999998654
No 192
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.46 E-value=6.7e-13 Score=89.76 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=69.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D 107 (162)
.+.++||||. +.+..+...+ .+.+|++++|.|.....+-... .++..+.. .+.|+++|.||+|
T Consensus 50 ~l~i~Dt~G~----------~~~~~~~~~~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 116 (187)
T cd04132 50 ELALWDTAGQ----------EEYDRLRPLS---YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTD 116 (187)
T ss_pred EEEEEECCCc----------hhHHHHHHHh---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 4789999998 2223322233 3456999999998764322221 12333322 3689999999999
Q ss_pred CCCcHHHH--HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVA--RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+....... -..+..++.....+ ..+++++||++|.|+++++..+.+.+.
T Consensus 117 l~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 117 LRKDKNLDRKVTPAQAESVAKKQG--AFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred hhhCccccCCcCHHHHHHHHHHcC--CcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 86432100 00112222333332 237899999999999999999987654
No 193
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.46 E-value=2.4e-12 Score=86.31 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=68.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.+|||||.. .+..+...++ +.+|+++++.|...+.+-... .++..+.. .++|+++|.||+|
T Consensus 50 ~l~i~Dt~G~~----------~~~~~~~~~~---~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (175)
T cd01874 50 TLGLFDTAGQE----------DYDRLRPLSY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 116 (175)
T ss_pred EEEEEECCCcc----------chhhhhhhhc---ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHh
Confidence 47899999982 1222233333 346999999998764322222 24444433 2689999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+..+..+.. +..++.....+ ..+++++||++|.|++++++.+..+
T Consensus 117 l~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLK--AVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhhChhhHHHhhhccCCCcCHHHHHHHHHHhC--CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 86543221111 11111222222 2589999999999999999998764
No 194
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.45 E-value=2.2e-12 Score=87.52 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=69.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||.. .+..+...+ ...+++++++.|....-+-.. ..++..+... +.|+++|.||+|
T Consensus 49 ~l~i~Dt~G~~----------~~~~l~~~~---~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~D 115 (189)
T cd04134 49 ELSLWDTAGQE----------EFDRLRSLS---YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCD 115 (189)
T ss_pred EEEEEECCCCh----------hcccccccc---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 58899999981 112222223 245689998888765422222 2244444432 689999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+.....+.. +...+.....+ ..+++++||++|.|+++++.++.+.+-
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 116 LREARNERDDLQRYGKHTISYEEGLAVAKRIN--ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred hccChhhHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 97544322111 11222222222 257899999999999999999987653
No 195
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.45 E-value=3.6e-12 Score=84.28 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=67.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||. +.+......+. +.+|+++++.|....-+-.. ..++..+.. .++|+++|.||.|
T Consensus 50 ~l~i~D~~g~----------~~~~~~~~~~~---~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~D 116 (161)
T cd04117 50 RIQIWDTAGQ----------ERYQTITKQYY---RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD 116 (161)
T ss_pred EEEEEeCCCc----------HhHHhhHHHHh---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 4789999997 22233344443 35699999999865321111 122333322 2578999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.....+.. +.........+ .+++++||++|.|+++++.+|.+.
T Consensus 117 l~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 117 EEQKRQVGD--EQGNKLAKEYG---MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cccccCCCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 864332211 12222222222 478999999999999999999764
No 196
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=3.1e-12 Score=90.45 Aligned_cols=123 Identities=25% Similarity=0.298 Sum_probs=79.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH-----HhCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK 105 (162)
..+.++||||.-.... .+..+..+.+.. .... .+++++|+|++......+.....++. ..++|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~---~~~~~~~~~~~l-~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFA---FRESGRKLVERL-SGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHh---hhHHHHHHHHHH-HhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 3699999999722211 122223333333 2222 69999999998766555544443332 458999999999
Q ss_pred cCCCCcHHHHHHHHHHHH------------------------HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 106 TDTVFPIDVARRAMQIEE------------------------SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
+|+.+..+.+...+.+.. .+...+. ..+++++|++++.|+++++++|.+.+..
T Consensus 172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~-~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL-PVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC-CCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 999977665444333331 1122221 2489999999999999999999987653
No 197
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.44 E-value=1.4e-12 Score=89.95 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=68.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++||||+ +.+......++ +.+|++++|.|...+-+-.. ..++..+.. ...|+++|.||+
T Consensus 53 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 53 KLQLWDTAGQ----------ERFRSITRSYY---RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEeCCcc----------hhHHHHHHHHh---cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 4789999998 23344444454 34599999999876421111 122332222 246689999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ +...+.....+ .+++++||++|.|+++++++|.+.+
T Consensus 120 Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 120 DLESQRQVTR--EEAEKLAKDLG---MKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred ccccccccCH--HHHHHHHHHhC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9875332211 11222233232 5899999999999999999998754
No 198
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.6e-12 Score=90.27 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=92.3
Q ss_pred eeccCCCCcceEEE---EEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHH
Q 031293 12 VRTSDKPGLTQTIN---FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL 88 (162)
Q Consensus 12 ~~~~~~~g~t~~~~---~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~ 88 (162)
+..+...|+|...- +.+-.+.+.-+|+||| .+++++++.+..+-|+.++|+.+.++..+++.++
T Consensus 95 APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH-------------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEH 161 (449)
T KOG0460|consen 95 APEEKARGITINAAHVEYETAKRHYAHTDCPGH-------------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREH 161 (449)
T ss_pred ChhhhhccceEeeeeeeeeccccccccCCCCch-------------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHH
Confidence 34556678876433 3344778999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCC
Q 031293 89 ISLMERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKS 142 (162)
Q Consensus 89 ~~~l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~ 142 (162)
+-..+..+++ +++.+||.|++++.+ .+-....+++.+..++. ...|++.=||+.
T Consensus 162 lLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 162 LLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALC 219 (449)
T ss_pred HHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhh
Confidence 9988888988 788999999995444 44444566777766542 246888877653
No 199
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.44 E-value=2e-12 Score=86.36 Aligned_cols=111 Identities=15% Similarity=0.021 Sum_probs=68.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||... +..+...+ .+.+|+++++.|.....+-.. ..++..+... ++|+++|.||+|
T Consensus 47 ~~~i~Dt~G~~~----------~~~~~~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 113 (174)
T smart00174 47 ELGLWDTAGQED----------YDRLRPLS---YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLD 113 (174)
T ss_pred EEEEEECCCCcc----------cchhchhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChh
Confidence 488999999821 12222222 345699999999875422211 1234444332 689999999999
Q ss_pred CCCcHHHH-H---------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVA-R---------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~-~---------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+....... . ..+...+.....+ ..+++++||++|.|++++++.+.+.+
T Consensus 114 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 114 LREDKSTLRELSKQKQEPVTYEQGEALAKRIG--AVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhChhhhhhhhcccCCCccHHHHHHHHHHcC--CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 87432210 0 0111222333332 24789999999999999999988654
No 200
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.43 E-value=1.3e-12 Score=87.34 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCC
Q 031293 55 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 134 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (162)
.+.+.+.......+|++++|+|++.+....+..++..+ .++|.++|+||+|+.++....... +.+.... .+
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~----~~~~~~~---~~ 77 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWL----KYFESKG---EK 77 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHH----HHHHhcC---Ce
Confidence 45566666677788999999999887665555554544 267999999999997543322222 2222222 37
Q ss_pred eEEeecCCCCCHHHHHHHHHHhh
Q 031293 135 VMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 135 i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
++++||+++.|++++.+.+.+.+
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHH
Confidence 89999999999999999998754
No 201
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.43 E-value=5.3e-12 Score=84.17 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=67.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----hCCceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER----SQTKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~----~~~~~ivv~nK 105 (162)
.+.++||||. +.+. .+...++ +.+|++++++|+..+.+-... .++..+.. .++|+++|+||
T Consensus 52 ~~~i~Dt~G~----------~~~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 52 KVQLWDTAGQ----------ERFRKSMVQHYY---RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEeCCCh----------HHHHHhhHHHhh---cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5889999998 1122 2233333 456999999999764322222 23333332 25899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---CCCHHHHHHHHHHhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSLRTVLSKIA 157 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---~~g~~~l~~~i~~~~ 157 (162)
+|+........ +...+...... .+++++||++ +.++++++..+.+.+
T Consensus 119 ~Dl~~~~~~~~--~~~~~~~~~~~---~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 119 CDLREQIQVPT--DLAQRFADAHS---MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccchhhcCCCH--HHHHHHHHHcC---CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 99864332211 11222222222 5899999999 888999888887654
No 202
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=5.6e-12 Score=90.30 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=91.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe--CCceEEEcCCCCcccc-cCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAY-AKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|||+++.. ..+++++|.||...+. ... +..|++-|.||+-+.. .... +-.++++..+++.++++||
T Consensus 175 lls~vS~A--kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G-------LG~~FLrHIERt~vL~hvi 245 (369)
T COG0536 175 LLSAVSAA--KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG-------LGLRFLRHIERTRVLLHVI 245 (369)
T ss_pred HHHHHhhc--CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC-------ccHHHHHHHHhhheeEEEE
Confidence 57778777 6899999999986654 232 4459999999985442 1211 2223344445558999999
Q ss_pred ecCCCCC---ccH-HHHHHHHHHh-----CCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 031293 76 DTKWGVK---PRD-HELISLMERS-----QTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 145 (162)
Q Consensus 76 d~~~~~~---~~~-~~~~~~l~~~-----~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g 145 (162)
|....-. ..+ ..+...|..+ ++|.++|+||+|++ +++..+...+.+.+. ..+ ...+++||.+++|
T Consensus 246 D~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~---~~~--~~~~~ISa~t~~g 320 (369)
T COG0536 246 DLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA---LGW--EVFYLISALTREG 320 (369)
T ss_pred ecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh---cCC--CcceeeehhcccC
Confidence 9764221 111 2223344433 68999999999955 334444333333222 211 2333399999999
Q ss_pred HHHHHHHHHHhhhh
Q 031293 146 IRSLRTVLSKIARF 159 (162)
Q Consensus 146 ~~~l~~~i~~~~~~ 159 (162)
+++|...+.+.++.
T Consensus 321 ~~~L~~~~~~~l~~ 334 (369)
T COG0536 321 LDELLRALAELLEE 334 (369)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
No 203
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.43 E-value=2.8e-12 Score=98.92 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=54.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+........+.+|++++|+|+..+.......++......++|+++++||+|+.
T Consensus 78 ~~~inliDTPG~-------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 DCLINLLDTPGH-------------EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred CEEEEEEECCCc-------------hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence 556999999999 4444444444566799999999998887777777777777899999999999986
Q ss_pred C
Q 031293 110 F 110 (162)
Q Consensus 110 ~ 110 (162)
.
T Consensus 145 ~ 145 (526)
T PRK00741 145 G 145 (526)
T ss_pred c
Confidence 4
No 204
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-12 Score=101.07 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=87.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC-
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF- 110 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~- 110 (162)
.+.++||||| +.|..--.++.+.||++|+|+|...++.+++++.+..|+..+.||||++||+|.+-
T Consensus 541 g~lvIdtpgh-------------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYg 607 (1064)
T KOG1144|consen 541 GLLVIDTPGH-------------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYG 607 (1064)
T ss_pred eeEEecCCCc-------------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcc
Confidence 4889999999 77777777888999999999999999999999999999999999999999999641
Q ss_pred -----cHHH---------------HHHHHHHHHHHHhc------------CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 111 -----PIDV---------------ARRAMQIEESLKAN------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 111 -----~~~~---------------~~~~~~~~~~~~~~------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
...+ ...+..+...+... -...+.++|+||.+|+|+.+|+.+|.++.+
T Consensus 608 wk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 608 WKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 1111 11111111112111 112468999999999999999999988764
No 205
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.43 E-value=1.2e-12 Score=87.49 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=67.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.+|||||.. .+..+... ..+.+|+++++.|..++.+-.. ..++..+.. .++|+++|.||+|
T Consensus 49 ~~~i~Dt~G~~----------~~~~~~~~---~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D 115 (173)
T cd04130 49 RLQLCDTAGQD----------EFDKLRPL---CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115 (173)
T ss_pred EEEEEECCCCh----------hhcccccc---ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence 47899999981 11222222 2346699999999876432222 234444443 3589999999999
Q ss_pred CCCcHHHH----------HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 108 TVFPIDVA----------RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 108 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+....... -..+.........+ ..+++++||++|.|++++++.+.-
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIG--ACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hccChhHHHHHhhcCCCCcCHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHHHHHHHh
Confidence 86432110 00112222333232 248999999999999999998763
No 206
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.43 E-value=3.8e-12 Score=88.61 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=79.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|.+......++...|+. .+ ....+.++.++||||+ - ...+.....+|++++++|+..+
T Consensus 55 l~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~-------------~---~~~l~~ak~aDvVllviDa~~~ 116 (225)
T cd01882 55 LIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPND-------------I---NAMIDIAKVADLVLLLIDASFG 116 (225)
T ss_pred HHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCch-------------H---HHHHHHHHhcCEEEEEEecCcC
Confidence 355565542223334444431 11 1123567999999987 1 1222223456999999999988
Q ss_pred CCccHHHHHHHHHHhCCce-EEEEeccCCCCcH-HHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293 81 VKPRDHELISLMERSQTKY-QVVLTKTDTVFPI-DVARRAMQIEESLKANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~ 143 (162)
+...+..++..+...+.|. ++|+||+|++... ...+..+.+++.+........+++++||++.
T Consensus 117 ~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 117 FEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 8888888888888778885 5599999998433 2444455565544322223469999999886
No 207
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.43 E-value=3.9e-12 Score=88.40 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=68.3
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHH----hCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER----SQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~----~~~~~ivv~nK 105 (162)
..+.++||||.. ..+....... .+|++++|+|+.++-+-. ..+++..+.. .++|+++|.||
T Consensus 50 ~~l~i~Dt~G~~-------------~~~~~~~~~~-~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 50 STLVVIDHWEQE-------------MWTEDSCMQY-QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEeCCCcc-------------hHHHhHHhhc-CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 358899999992 1111211110 569999999987642211 1233444433 35899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+|+........ +..++.....+ .+++++||++|.|++++++++.+.+.
T Consensus 116 ~Dl~~~~~v~~--~~~~~~a~~~~---~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 116 SDLARSREVSV--QEGRACAVVFD---CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred hhccccceecH--HHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99875432211 11222222222 47899999999999999999987663
No 208
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=8e-12 Score=82.12 Aligned_cols=108 Identities=21% Similarity=0.292 Sum_probs=80.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-CceEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~~~ivv~nK~Dl~ 109 (162)
..+.++||||| +++.-++.-+.++ +.++++++|++.+.+.....++.++...+ +|++|++||.|+.
T Consensus 68 ~~v~LfgtPGq----------~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~ 134 (187)
T COG2229 68 TGVHLFGTPGQ----------ERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF 134 (187)
T ss_pred ceEEEecCCCc----------HHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC
Confidence 57999999999 3444445555444 68999999999887776677888888777 9999999999998
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+....++ +++.+.... ...+++..+|..++|..+.+..+...
T Consensus 135 ~a~ppe~----i~e~l~~~~-~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 135 DALPPEK----IREALKLEL-LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCCHHH----HHHHHHhcc-CCCceeeeecccchhHHHHHHHHHhh
Confidence 6544433 333333331 23699999999999999888877654
No 209
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.42 E-value=1.8e-12 Score=86.27 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=66.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~ 106 (162)
++.++||||+. .+..+...++.. ++.+++++|...+.+-.. ..+...+. ..+.|++++.||+
T Consensus 50 ~~~i~Dt~G~~----------~~~~~~~~~~~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 116 (168)
T cd04177 50 DLEILDTAGTE----------QFTAMRELYIKS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKA 116 (168)
T ss_pred EEEEEeCCCcc----------cchhhhHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEECh
Confidence 57899999982 223344444433 488888888765321111 11222222 2368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ +...+.....+ ..+++++||++|.|+++++.++...+
T Consensus 117 D~~~~~~~~~--~~~~~~~~~~~--~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 117 DLEDDRQVSR--EDGVSLSQQWG--NVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred hccccCccCH--HHHHHHHHHcC--CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9864332211 11222222222 25899999999999999999997643
No 210
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.6e-12 Score=85.44 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=77.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~D 107 (162)
++.+|||+|+ +++..+...|++++ .++++|.|-....+- ....++..+++. ++|.++|.||+|
T Consensus 62 ~lQiWDtaGQ----------erf~ti~~sYyrgA---~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 62 KLQIWDTAGQ----------ERFRTITTAYYRGA---MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEcccc----------hhHHHHHHHHHhhc---CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccc
Confidence 5889999999 55677788887765 777777776443211 122355666554 588999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+-++..+.. +.-+++..+++. +++++||++|.|+++.+..|.+.+
T Consensus 129 ~~~~R~V~~--e~ge~lA~e~G~---~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 129 LEEKRQVSK--ERGEALAREYGI---KFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred ccccccccH--HHHHHHHHHhCC---eEEEccccCCCCHHHHHHHHHHHH
Confidence 976444332 345555666654 999999999999999999988755
No 211
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.42 E-value=4.5e-12 Score=89.37 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------------hCCc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------------SQTK 98 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------------~~~~ 98 (162)
.+.+|||||.. .+..+...++ ..+|++++|.|....-+-.. ..+++.+.. .++|
T Consensus 49 ~l~I~Dt~G~~----------~~~~~~~~~~---~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 49 QLDILDTSGNH----------PFPAMRRLSI---LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEEECCCCh----------hhhHHHHHHh---ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 47799999981 1222222222 34599999999875321111 122333321 2589
Q ss_pred eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 99 YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 99 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+++|+||+|+...... ..+.+.+.+... ...+++++||++|.|+++++++|.+..
T Consensus 116 iIivgNK~Dl~~~~~v--~~~ei~~~~~~~--~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 116 MVICGNKADRDFPREV--QRDEVEQLVGGD--ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEEECccchhcccc--CHHHHHHHHHhc--CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999642221 112343433322 125799999999999999999998765
No 212
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.42 E-value=1.4e-11 Score=88.18 Aligned_cols=105 Identities=21% Similarity=0.417 Sum_probs=71.3
Q ss_pred ceEEEcCCCCcccccCHH----H----HHHHHHHHHHHHhc-------CcccceeEEEeecCC-CCCccHHHHHHHHHHh
Q 031293 32 KLCLVDLPGYGFAYAKEE----V----KDAWEELVKEYVST-------RVSLKRVCLLIDTKW-GVKPRDHELISLMERS 95 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~----~----~~~~~~~~~~~~~~-------~~~~~~vi~vid~~~-~~~~~~~~~~~~l~~~ 95 (162)
+++++||||+|+...... . .+.+..++.+..+- -..+|++++++++.. ++...+.++++.+..
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~- 142 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK- 142 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-
Confidence 599999999987632211 1 11222222222111 124788999998764 677778888888875
Q ss_pred CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293 96 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 140 (162)
Q Consensus 96 ~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 140 (162)
++|+++|+||+|++.+.+.....+.+++.+..++. +++.++.
T Consensus 143 ~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i---~~~~~~~ 184 (276)
T cd01850 143 RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNI---KIYKFPE 184 (276)
T ss_pred cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCC---ceECCCC
Confidence 79999999999998877777777778888877664 6665554
No 213
>PRK12740 elongation factor G; Reviewed
Probab=99.42 E-value=2.7e-12 Score=102.11 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|.|....... + +.++.++||||+ ..+..........+|++++++|+..+....+..++..+.
T Consensus 43 ~rgiTi~~~~~~~~~~~~~i~liDtPG~-------------~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~ 109 (668)
T PRK12740 43 ERGISITSAATTCEWKGHKINLIDTPGH-------------VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAE 109 (668)
T ss_pred hcCCCeeeceEEEEECCEEEEEEECCCc-------------HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHH
Confidence 456665444322 2 567999999999 334444444455679999999999888777777777777
Q ss_pred HhCCceEEEEeccCCCC
Q 031293 94 RSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 94 ~~~~~~ivv~nK~Dl~~ 110 (162)
..++|+++|+||+|+..
T Consensus 110 ~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 110 KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HcCCCEEEEEECCCCCC
Confidence 77899999999999873
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.41 E-value=4.3e-12 Score=87.70 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=72.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.++||||+ ..+..........+|++++|+|+..+.......++..+...++|+++|+||+|++.
T Consensus 71 ~~i~iiDtpG~-------------~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~ 137 (213)
T cd04167 71 YLFNIIDTPGH-------------VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLI 137 (213)
T ss_pred EEEEEEECCCC-------------cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCc
Confidence 35899999999 33333344444566999999999887766555566666556799999999999861
Q ss_pred ------cH----HHHHHHHHHHHHHHhcCC--------CCCCeEEeecCCCCCHH--------HHHHHHHHh
Q 031293 111 ------PI----DVARRAMQIEESLKANNS--------LVQPVMMVSSKSGAGIR--------SLRTVLSKI 156 (162)
Q Consensus 111 ------~~----~~~~~~~~~~~~~~~~~~--------~~~~i~~~Sa~~~~g~~--------~l~~~i~~~ 156 (162)
.. ...+.++.+...+..... ....+++.|++.+.++. +|++.|.+.
T Consensus 138 ~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (213)
T cd04167 138 LELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN 209 (213)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence 11 123333444444433321 12248889999987765 555555543
No 215
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.41 E-value=5.4e-12 Score=83.05 Aligned_cols=95 Identities=23% Similarity=0.316 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCC
Q 031293 54 WEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 133 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (162)
|+++++..+++ +|++++|+|++.+....+.++...+...++|+++|+||+|+.+...... +....... ..
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~----~~~~~~~~---~~ 71 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEK----WKSIKESE---GI 71 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHH----HHHHHHhC---CC
Confidence 34555555443 4999999999887666666666666666899999999999975433222 11111212 24
Q ss_pred CeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 134 PVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 134 ~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+++++||+++.|+++|++.+.+.++
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 7899999999999999999987654
No 216
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.41 E-value=2e-12 Score=86.85 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=66.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHHH---hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~~---~~~~~ivv~nK~ 106 (162)
.+.++||||+. .+..+...+.. .+++++++.|.....+-.. ..++. .++. .+.|+++|+||+
T Consensus 50 ~~~l~D~~g~~----------~~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 116 (180)
T cd04137 50 HLEIVDTAGQD----------EYSILPQKYSI---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKS 116 (180)
T ss_pred EEEEEECCChH----------hhHHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEch
Confidence 47899999982 22223333332 3588899988875321111 11222 2222 357999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+........ +.........+ .+++++||+++.|+++++.++.+.+.
T Consensus 117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 117 DLHTQRQVST--EEGKELAESWG---AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred hhhhcCccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9864322211 12222223222 48999999999999999999987654
No 217
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.41 E-value=7e-12 Score=83.73 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=67.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D 107 (162)
.+.++||||.... ......+ .+.+++++++.|...+-+-.. ..+...+.. .++|+++|+||+|
T Consensus 49 ~~~i~Dt~G~~~~----------~~~~~~~---~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~D 115 (174)
T cd04135 49 LLGLYDTAGQEDY----------DRLRPLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQID 115 (174)
T ss_pred EEEEEeCCCcccc----------ccccccc---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchh
Confidence 3679999998321 1111122 345689999999875422111 223344433 3689999999999
Q ss_pred CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+....... .+..+......+ ..+++++||++|.|++++++.+.+.+
T Consensus 116 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 116 LRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG--AHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hhcChhhHHHHhhccCCCCCHHHHHHHHHHcC--CCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 8654322110 011222223232 24789999999999999999987653
No 218
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.41 E-value=4.1e-12 Score=83.46 Aligned_cols=135 Identities=11% Similarity=0.044 Sum_probs=79.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. ..+..++++.+.. .+..+ .++.++|+||+. .+......++. .+|++++++
T Consensus 15 li~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~---~~~~~i~v~ 78 (160)
T cd00876 15 ITIQFVKGT---FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDLYIR---QGDGFILVY 78 (160)
T ss_pred HHHHHHhCC---CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHHh---cCCEEEEEE
Confidence 467777662 2344444443222 23333 347899999982 22333444433 359999999
Q ss_pred ecCCCCCccH-HHHHHHH-HH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPRD-HELISLM-ER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l-~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|...+.+... ..+...+ .. ...|+++|+||+|+....... .+.........+ .+++++||+++.|+++++
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGKALAKEWG---CPFIETSAKDNINIDEVF 153 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHHHHHHHcC---CcEEEeccCCCCCHHHHH
Confidence 9865321111 1222222 22 258999999999997532221 123333333332 489999999999999999
Q ss_pred HHHHHh
Q 031293 151 TVLSKI 156 (162)
Q Consensus 151 ~~i~~~ 156 (162)
++|.+.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999764
No 219
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.41 E-value=4.3e-12 Score=90.94 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=75.1
Q ss_pred EcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHH
Q 031293 36 VDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 115 (162)
Q Consensus 36 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~ 115 (162)
-+.||| +.+.+++.......+|++++|+|++.+.+.....+.+.+. +.|+++|+||+|+.++....
T Consensus 2 ~WfpgH------------m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~ 67 (276)
T TIGR03596 2 QWFPGH------------MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTK 67 (276)
T ss_pred ccChHH------------HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHH
Confidence 368898 3455666666677789999999999888777766666553 68999999999997654333
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 116 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+.+. +...+ .+++++||.++.|+++|.+.+.+.++
T Consensus 68 ~~~~~----~~~~~---~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 68 QWLKY----FEEKG---IKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred HHHHH----HHHcC---CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 32222 22222 37899999999999999999887654
No 220
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.41 E-value=2.3e-12 Score=85.21 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=67.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||.. .+......+++ .+|+++++.|..+.-+-.. ..+...+.. .++|+++|+||+
T Consensus 50 ~l~i~Dt~G~~----------~~~~~~~~~~~---~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTE----------QFASMRDLYIK---NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCcc----------cccchHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 47799999972 22334444443 3599999999876422111 223333332 368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+..+..... +.........+ .+++++||++|.|+++++.++.+.+
T Consensus 117 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 117 DLESEREVSS--AEGRALAEEWG---CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cchhcCccCH--HHHHHHHHHhC---CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 9864322211 11122222222 4889999999999999999997654
No 221
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.40 E-value=8.2e-12 Score=89.17 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=53.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+..........+|++++|+|+..+.......++..+...++|.++++||+|..
T Consensus 63 ~~~i~liDtPG~-------------~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 63 GHKINLIDTPGY-------------ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred CEEEEEEECcCH-------------HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 457999999999 3333444444556799999999998877766777777777899999999999987
Q ss_pred Cc
Q 031293 110 FP 111 (162)
Q Consensus 110 ~~ 111 (162)
..
T Consensus 130 ~~ 131 (268)
T cd04170 130 RA 131 (268)
T ss_pred CC
Confidence 43
No 222
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.40 E-value=6.8e-12 Score=81.03 Aligned_cols=108 Identities=19% Similarity=0.070 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH-----HHHHHhCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-----SLMERSQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~-----~~l~~~~~~~ivv~n 104 (162)
+..+.++|+||+. ............+|.+++|+|+..+........+ ......++|+++++|
T Consensus 44 ~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 44 KVKLQIWDTAGQE-------------RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEEecCChH-------------HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 4458999999982 2222222233456999999999875433332211 222334789999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
|+|+.......... ... ..... ...+++.+|+..+.|+++++++|.
T Consensus 111 k~D~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 111 KIDLPEERVVSEEE-LAE-QLAKE--LGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ccccccccchHHHH-HHH-HHHhh--cCCcEEEEecCCCCChHHHHHHHh
Confidence 99997554433211 011 11111 236999999999999999999875
No 223
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.40 E-value=9.8e-12 Score=83.08 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=66.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.++||||.. .+..+... ....+|+++++.|....-+ .....+...+.. .+.|+++|.||+|
T Consensus 50 ~l~i~Dt~G~~----------~~~~~~~~---~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 116 (175)
T cd01870 50 ELALWDTAGQE----------DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 116 (175)
T ss_pred EEEEEeCCCch----------hhhhcccc---ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChh
Confidence 47899999981 12222222 2355689998888764321 111123333333 3689999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.....+.. ...++..... ...+++++||++|.|+++++.++.+.+
T Consensus 117 l~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 117 LRNDEHTRRELAKMKQEPVKPEEGRDMANKI--GAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cccChhhhhhhhhccCCCccHHHHHHHHHHc--CCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 87543221111 1112222222 234899999999999999999998654
No 224
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.39 E-value=9.2e-12 Score=96.11 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=54.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+..........+|++++|+|+..++......+++.+...++|+++++||+|+.
T Consensus 79 ~~~inliDTPG~-------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 DCLVNLLDTPGH-------------EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred CeEEEEEECCCh-------------hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 557999999999 4444444455566799999999998877777777777777789999999999985
No 225
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.39 E-value=4.1e-12 Score=86.36 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=69.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D 107 (162)
.+.+|||||. +.+..+...++ +++|++++|.|....-+-... .+...+.. .++|+++|.||.|
T Consensus 52 ~l~i~Dt~G~----------e~~~~l~~~~~---~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 118 (191)
T cd01875 52 SLNLWDTAGQ----------EEYDRLRTLSY---PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKD 118 (191)
T ss_pred EEEEEECCCc----------hhhhhhhhhhc---cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChh
Confidence 4889999999 33344444443 346999999998654322222 13333332 3689999999999
Q ss_pred CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.....+. .+..++.....+ ..+++++||++|.|+++++.++.+.+
T Consensus 119 L~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 119 LRNDADTLKKLKEQGQAPITPQQGGALAKQIH--AVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred hhcChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9643221100 011222222222 24899999999999999999998755
No 226
>PRK13351 elongation factor G; Reviewed
Probab=99.38 E-value=5.2e-12 Score=100.77 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=54.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+........+.+|++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus 72 ~~~i~liDtPG~-------------~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 NHRINLIDTPGH-------------IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV 138 (687)
T ss_pred CEEEEEEECCCc-------------HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC
Confidence 557999999999 3344444444556699999999998887777777777877899999999999987
Q ss_pred C
Q 031293 110 F 110 (162)
Q Consensus 110 ~ 110 (162)
.
T Consensus 139 ~ 139 (687)
T PRK13351 139 G 139 (687)
T ss_pred C
Confidence 4
No 227
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.38 E-value=7.9e-12 Score=83.87 Aligned_cols=111 Identities=16% Similarity=0.070 Sum_probs=70.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.++||+|.. .+..+...++ +++++++++.|.....+-... .++..+.. .+.|+++|.||+|
T Consensus 50 ~l~i~Dt~G~~----------~~~~~~~~~~---~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~D 116 (176)
T cd04133 50 NLGLWDTAGQE----------DYNRLRPLSY---RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLD 116 (176)
T ss_pred EEEEEECCCCc----------cccccchhhc---CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChh
Confidence 58899999982 2233333443 356999999998764332222 34444442 3689999999999
Q ss_pred CCCcHHH--------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDV--------ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.++... .-..+..++.....+. .+++++||++|.|+++++..+.+.+
T Consensus 117 l~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 117 LRDDKQYLADHPGASPITTAQGEELRKQIGA--AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hccChhhhhhccCCCCCCHHHHHHHHHHcCC--CEEEECCCCcccCHHHHHHHHHHHH
Confidence 9643210 0001222333333322 3689999999999999999998754
No 228
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.7e-12 Score=85.71 Aligned_cols=109 Identities=13% Similarity=0.176 Sum_probs=74.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHhCCc---eEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTK---YQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~~~~---~ivv~nK~D 107 (162)
++.||||+|+ |+++.+...|+++. +.+++|.|....-+ .....+.+.|.+..-| +.+|.||+|
T Consensus 55 kfeIWDTAGQ----------ERy~slapMYyRgA---~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~D 121 (200)
T KOG0092|consen 55 KFEIWDTAGQ----------ERYHSLAPMYYRGA---NAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKAD 121 (200)
T ss_pred EEEEEEcCCc----------ccccccccceecCC---cEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhh
Confidence 5889999999 55566666776554 78888888764211 1123344555543223 677999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.....++. ++........+ ..++.+||++|.|+++++..|.+.+.
T Consensus 122 L~~~R~V~~--~ea~~yAe~~g---ll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 122 LLERREVEF--EEAQAYAESQG---LLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred hhhcccccH--HHHHHHHHhcC---CEEEEEecccccCHHHHHHHHHHhcc
Confidence 986443322 33444444444 49999999999999999999988764
No 229
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.38 E-value=2.4e-12 Score=86.33 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~---~~~~~ivv~n 104 (162)
+..+.++|.+|.... ..+.+.|+. .+++++||+|+.+.- .....++...+.. .++|+++++|
T Consensus 57 ~~~~~~~d~gG~~~~----------~~~w~~y~~---~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 57 GYSLTIWDLGGQESF----------RPLWKSYFQ---NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp TEEEEEEEESSSGGG----------GGGGGGGHT---TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred cEEEEEEeccccccc----------cccceeecc---ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEec
Confidence 446999999998221 233444443 459999999998632 1111222233331 2589999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHH--hc-CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLK--AN-NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|.|+.+.....+ +.+.+. .. ..+.+.++.+||.+|+|+.+.++||.+.+
T Consensus 124 K~D~~~~~~~~~----i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 124 KQDLPDAMSEEE----IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp STTSTTSSTHHH----HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred cccccCcchhhH----HHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 999875433332 222222 12 23456899999999999999999998753
No 230
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.37 E-value=4.4e-12 Score=101.12 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|+|.+.....+ +.++.++||||+. .+........+.+|++++|+|+.++....+..++..+.
T Consensus 58 ~rgiti~~~~~~~~~~~~~i~liDTPG~~-------------~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~ 124 (689)
T TIGR00484 58 ERGITITSAATTVFWKGHRINIIDTPGHV-------------DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQAN 124 (689)
T ss_pred hcCCCEecceEEEEECCeEEEEEECCCCc-------------chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHH
Confidence 4677776554332 6679999999992 23333334445569999999999988888888888888
Q ss_pred HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293 94 RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 94 ~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~ 143 (162)
..++|+++++||+|+.... .....+.+++.++... ...++++|+..+
T Consensus 125 ~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~--~~~~ipis~~~~ 171 (689)
T TIGR00484 125 RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANA--VPIQLPIGAEDN 171 (689)
T ss_pred HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCc--eeEEeccccCCC
Confidence 8899999999999998533 4445556665554321 124666776655
No 231
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=8.9e-12 Score=82.67 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=76.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh---CCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~---~~~~ivv~nK~ 106 (162)
++.+|||+|+ +++..++..|.++ ++++++|.|-.. .+.... .+++.++.. ++|.++|.||+
T Consensus 59 KlQIWDTAGQ----------ERFrtit~syYR~---ahGii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~ 124 (205)
T KOG0084|consen 59 KLQIWDTAGQ----------ERFRTITSSYYRG---AHGIIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKC 124 (205)
T ss_pred EEEeeecccc----------HHHhhhhHhhccC---CCeEEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeecc
Confidence 5999999999 5566667777655 488999988754 233322 244444443 57999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
|+.+...+.. +..+++...++. ..++++||+++.++++.+..|...+..
T Consensus 125 Dl~~~~~v~~--~~a~~fa~~~~~--~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 125 DLTEKRVVST--EEAQEFADELGI--PIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred ccHhheecCH--HHHHHHHHhcCC--cceeecccCCccCHHHHHHHHHHHHHH
Confidence 9975544332 233444555543 239999999999999999999876543
No 232
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.37 E-value=5.5e-12 Score=84.50 Aligned_cols=110 Identities=14% Similarity=0.029 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
++.++||||. +.+..+...++ +++|++++|.|...+-+-... .++..+... +.|+++|.||+|
T Consensus 50 ~l~i~Dt~G~----------~~~~~~~~~~~---~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~D 116 (174)
T cd01871 50 NLGLWDTAGQ----------EDYDRLRPLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 116 (174)
T ss_pred EEEEEECCCc----------hhhhhhhhhhc---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 4889999998 22233333333 456999999998764322222 233333322 589999999999
Q ss_pred CCCcHH-HHHH---------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPID-VARR---------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~-~~~~---------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+... .+.. .+..++.....+ ..+++++||++|.|++++++.+.+.
T Consensus 117 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 117 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hccChhhHHHHhhccCCCCCHHHHHHHHHHcC--CcEEEEecccccCCHHHHHHHHHHh
Confidence 964321 1100 112222233232 2488999999999999999988753
No 233
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=1.3e-11 Score=82.35 Aligned_cols=108 Identities=19% Similarity=0.071 Sum_probs=65.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH-HhCCceEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME-RSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~-~~~~~~ivv~nK~Dl~ 109 (162)
.+.++|++|.... ..+...++ ..+|++++|+|+.++.+-.. .+++..+. ..++|+++|+||+|+.
T Consensus 55 ~l~~~d~~g~~~~----------~~~~~~~~---~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 55 YLILREVGEDEVA----------ILLNDAEL---AACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEEEecCCcccc----------cccchhhh---hcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 4778999987322 22222332 34699999999876421111 12222221 1268999999999986
Q ss_pred CcHHH-HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 110 FPIDV-ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.... ....+.+ ....+. .+++++||++|.|++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 122 EQQQRYEVQPDEF---CRKLGL--PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ccccccccCHHHH---HHHcCC--CCCEEEEeccCccHHHHHHHHHHHh
Confidence 43221 1111222 222222 2568999999999999999998765
No 234
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.37 E-value=1.8e-11 Score=89.08 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=92.0
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCc--ccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRV--SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
+.++||.|| +.+++..++++- ..|..++++.|.++++....+++-.+...+.|+++|+||+|+.+
T Consensus 203 VsfVDtvGH-------------EpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 203 VSFVDTVGH-------------EPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred EEEEecCCc-------------cHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCc
Confidence 789999999 777888888763 47999999999999999999999999899999999999999998
Q ss_pred cHHHHHHHHHHHHHHHhc----------------------CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 111 PIDVARRAMQIEESLKAN----------------------NSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.+..+...+.+.+.++.. +....|++.+|+.+|+|++-|.+.+..
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 888877777777666531 223579999999999999877666543
No 235
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=3.1e-12 Score=90.99 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=93.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+||+. .+.++.+|.||.... .... +-++.++|+||+-....+.. .--++.+...++||.+++|+|.
T Consensus 79 LL~~LTnt--~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~------grG~~vlsv~R~ADlIiiVld~ 150 (365)
T COG1163 79 LLNKLTNT--KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GRGRQVLSVARNADLIIIVLDV 150 (365)
T ss_pred HHHHHhCC--CccccccCceecccccceEeecCceEEEEcCcccccCcccCC------CCcceeeeeeccCCEEEEEEec
Confidence 68999999 688999999998655 3333 56799999999743311110 0013345555677888888887
Q ss_pred CCCC------------------------------------------CccHHHH-HHHHHHh-------------------
Q 031293 78 KWGV------------------------------------------KPRDHEL-ISLMERS------------------- 95 (162)
Q Consensus 78 ~~~~------------------------------------------~~~~~~~-~~~l~~~------------------- 95 (162)
.++. +..+... -..|++.
T Consensus 151 ~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~i 230 (365)
T COG1163 151 FEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLI 230 (365)
T ss_pred CCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHH
Confidence 5322 1112221 1222221
Q ss_pred --------CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhhcC
Q 031293 96 --------QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFAKV 162 (162)
Q Consensus 96 --------~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~k~ 162 (162)
-+|.++|+||+|+++.++... +.+ ..+.+++||..+.|+++|.+.|-+.+.+.+|
T Consensus 231 d~l~~nrvY~p~l~v~NKiD~~~~e~~~~----l~~--------~~~~v~isa~~~~nld~L~e~i~~~L~liRV 293 (365)
T COG1163 231 DALEGNRVYKPALYVVNKIDLPGLEELER----LAR--------KPNSVPISAKKGINLDELKERIWDVLGLIRV 293 (365)
T ss_pred HHHhhcceeeeeEEEEecccccCHHHHHH----HHh--------ccceEEEecccCCCHHHHHHHHHHhhCeEEE
Confidence 258999999999997544332 211 1388999999999999999999988876543
No 236
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.36 E-value=9.3e-12 Score=92.40 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=78.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++|||||-+... ..+..+.. .|.+++++||.++..+++.-.++..-+.+.+.|+|+||+|..
T Consensus 67 ~~~INIvDTPGHADFGG------EVERvl~M-------VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp 133 (603)
T COG1217 67 GTRINIVDTPGHADFGG------EVERVLSM-------VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP 133 (603)
T ss_pred CeEEEEecCCCcCCccc------hhhhhhhh-------cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC
Confidence 56799999999932211 11222322 499999999999999999888877777799999999999987
Q ss_pred CcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCC----------CCHHHHHHHHHHhhh
Q 031293 110 FPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSG----------AGIRSLRTVLSKIAR 158 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~----------~g~~~l~~~i~~~~~ 158 (162)
+... .+.....-.++... ..-.+|+++.|+..| ..+..|++.|.+.++
T Consensus 134 ~Arp-~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 134 DARP-DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CCCH-HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 5332 22222222222221 123479999999886 457888888887764
No 237
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.35 E-value=9.8e-12 Score=89.52 Aligned_cols=103 Identities=14% Similarity=0.229 Sum_probs=75.5
Q ss_pred EEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHH
Q 031293 35 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 114 (162)
Q Consensus 35 ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~ 114 (162)
+-+.||| +.+.+++.......+|++++|+|++.+....+..+.+.+. +.|+++|+||+|+.+....
T Consensus 4 ~~wfpgH------------m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~ 69 (287)
T PRK09563 4 IQWFPGH------------MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVT 69 (287)
T ss_pred CcCcHHH------------HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHH
Confidence 5578998 3455666666677789999999999888776666655553 7899999999999754333
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..+ .+.+...+ .+++++||.++.|++++.+.+.+.++
T Consensus 70 ~~~----~~~~~~~~---~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 70 KKW----IEYFEEQG---IKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred HHH----HHHHHHcC---CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 222 22222222 47899999999999999999887654
No 238
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=2.7e-11 Score=84.56 Aligned_cols=111 Identities=15% Similarity=0.055 Sum_probs=70.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.+|||||. +.+..+...++ ++++++++|.|.....+-.. ..++..+... +.|+++|.||+|
T Consensus 62 ~l~iwDTaG~----------e~~~~~~~~~~---~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D 128 (232)
T cd04174 62 ELSLWDTSGS----------PYYDNVRPLCY---SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTD 128 (232)
T ss_pred EEEEEeCCCc----------hhhHHHHHHHc---CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 4889999998 33344444443 45699999999876433222 2344444432 578999999999
Q ss_pred CCCcHH----------HHHHHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHhh
Q 031293 108 TVFPID----------VARRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~~ 157 (162)
+..... ..-..+..++.....+. .+++++||++|. |++++|..+...+
T Consensus 129 L~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~--~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 129 LRTDLSTLMELSNQKQAPISYEQGCALAKQLGA--EVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred cccccchhhhhccccCCcCCHHHHHHHHHHcCC--CEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 853100 00011233444444432 258999999998 8999999987643
No 239
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.35 E-value=3.3e-11 Score=82.67 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCccc-ceeEEEeecCCCCCc---cHHHHHHHHHH-----hCCceE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSL-KRVCLLIDTKWGVKP---RDHELISLMER-----SQTKYQ 100 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~vid~~~~~~~---~~~~~~~~l~~-----~~~~~i 100 (162)
+..+.+|||||+. .+......++ +.+ +++++|+|+...... ....+...+.. .++|++
T Consensus 47 ~~~~~l~D~pG~~----------~~~~~~~~~~---~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl 113 (203)
T cd04105 47 GKKFRLVDVPGHP----------KLRDKLLETL---KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL 113 (203)
T ss_pred CceEEEEECCCCH----------HHHHHHHHHH---hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE
Confidence 3469999999992 1222233333 344 999999999764211 11112222221 368999
Q ss_pred EEEeccCCCCcHHHHHHHHHHHHHHHhc---------------------------------CCCCCCeEEeecCCCC-CH
Q 031293 101 VVLTKTDTVFPIDVARRAMQIEESLKAN---------------------------------NSLVQPVMMVSSKSGA-GI 146 (162)
Q Consensus 101 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~i~~~Sa~~~~-g~ 146 (162)
+++||+|+..........+.+++.+... ....+.++.+|+..+. |+
T Consensus 114 iv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~ 193 (203)
T cd04105 114 IACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGI 193 (203)
T ss_pred EEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCCh
Confidence 9999999874333323333333222110 0012456777777765 69
Q ss_pred HHHHHHHHH
Q 031293 147 RSLRTVLSK 155 (162)
Q Consensus 147 ~~l~~~i~~ 155 (162)
+++.+||.+
T Consensus 194 ~~~~~w~~~ 202 (203)
T cd04105 194 DGWEEWIDE 202 (203)
T ss_pred HhHHHHHhh
Confidence 999998875
No 240
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.34 E-value=2.3e-11 Score=84.93 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=83.0
Q ss_pred ceEEEcCCCCccc--ccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-----CCccHHHHHHHHHHhCCceEEEEe
Q 031293 32 KLCLVDLPGYGFA--YAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----VKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-----~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
++.++||||+-+. +... ..++-+.++... .-++++++|+... +.........+|.+...|+|+|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAs------GsIIte~lass~-ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfN 189 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSAS------GSIITETLASSF-PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFN 189 (366)
T ss_pred CEEEEcCCCceEEEEecCC------ccchHhhHhhcC-CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4999999998665 2221 344555555443 3678888886432 122223334677888999999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhc---------------------CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKAN---------------------NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+|+.+.....+++.+++.+-... .-+....+.+|+.+|.|+++++.++.+.+.
T Consensus 190 K~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 190 KTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 999998888777776665543221 112368899999999999999999987654
No 241
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.34 E-value=1.1e-11 Score=84.49 Aligned_cols=107 Identities=13% Similarity=-0.033 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.+|||||. +..+.. ...+.+|+++++.|.....+-... .+...+.. .+.|+++|.||+|
T Consensus 67 ~l~iwDTaG~-------------~~~~~~--~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~D 131 (195)
T cd01873 67 SLRLWDTFGD-------------HDKDRR--FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLD 131 (195)
T ss_pred EEEEEeCCCC-------------hhhhhc--ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 4889999998 221111 123567999999998765332222 24444443 2589999999999
Q ss_pred CCCcHH-----------------HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPID-----------------VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+... ..-..+..++.....+ .+++++||++|.|++++++.+.+.
T Consensus 132 L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~---~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 132 LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG---IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccchhhhcccccccccccCCccCHHHHHHHHHHhC---CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 863100 0001123333344333 389999999999999999988754
No 242
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.5e-11 Score=80.46 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=75.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHH-HHhC---CceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLM-ERSQ---TKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l-~~~~---~~~ivv~nK 105 (162)
++.+|||+|+ |++..++..|++.. .++++|.|-.. .+.... .+++.+ ++.+ .-+.+|.||
T Consensus 72 rLQlWDTAGQ----------ERFrslipsY~Rds---~vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnK 137 (221)
T KOG0094|consen 72 RLQLWDTAGQ----------ERFRSLIPSYIRDS---SVAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNK 137 (221)
T ss_pred EEEEEecccH----------HHHhhhhhhhccCC---eEEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEccc
Confidence 5889999999 77788899998776 56666666543 232222 334333 3332 457899999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.||.++.++.... -.....+.+ ..++.+||+.|.|+.+++..|...++
T Consensus 138 tDL~dkrqvs~eE--g~~kAkel~---a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 138 TDLSDKRQVSIEE--GERKAKELN---AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred ccccchhhhhHHH--HHHHHHHhC---cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 9999887664322 223344444 38899999999999999999987654
No 243
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=2.9e-11 Score=86.16 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+..+.....+.+|++++|+|+..+.......+++.+...++|+++++||+|+.
T Consensus 70 ~~~i~liDTPG~-------------~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 70 DCVINLLDTPGH-------------EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CEEEEEEECCCc-------------hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 557999999999 4444444444566799999999988776666667777777789999999999986
Q ss_pred CcHHHHHHHHHHHHHHH
Q 031293 110 FPIDVARRAMQIEESLK 126 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~ 126 (162)
... ..+.++.+++.++
T Consensus 137 ~a~-~~~~~~~l~~~l~ 152 (267)
T cd04169 137 GRD-PLELLDEIEEELG 152 (267)
T ss_pred CCC-HHHHHHHHHHHHC
Confidence 443 2234456665554
No 244
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.32 E-value=9.9e-12 Score=81.92 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=63.6
Q ss_pred cCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 64 TRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 64 ~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
....+|++++|+|++.+....+..+.+.+... ++|+++|+||+|+.++.....+.+. +..... ..++++||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~----~~~~~~--~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKI----LSKEYP--TIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHH----HhcCCc--EEEEEeecc
Confidence 34567999999999988766666777777643 4899999999999865543332222 222211 236889999
Q ss_pred CCCCHHHHHHHHHHhh
Q 031293 142 SGAGIRSLRTVLSKIA 157 (162)
Q Consensus 142 ~~~g~~~l~~~i~~~~ 157 (162)
++.|+++|++.+.+..
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999998754
No 245
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.32 E-value=1.4e-10 Score=74.90 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH----HHH---hCCceEEE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL----MER---SQTKYQVV 102 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~----l~~---~~~~~ivv 102 (162)
+..+.++|..|+ ... ..+.++|+... |++++|+|+..... ..++... +.+ .+.|++++
T Consensus 59 ~~~L~iwDvGGq------~~l----r~~W~nYfest---dglIwvvDssD~~r--~~e~~~~L~~lL~eerlaG~~~Lvl 123 (185)
T KOG0073|consen 59 GYTLNIWDVGGQ------KTL----RSYWKNYFEST---DGLIWVVDSSDRMR--MQECKQELTELLVEERLAGAPLLVL 123 (185)
T ss_pred ceEEEEEEcCCc------chh----HHHHHHhhhcc---CeEEEEEECchHHH--HHHHHHHHHHHHhhhhhcCCceEEE
Confidence 456999999999 333 44555555433 99999999975421 1122222 222 26899999
Q ss_pred EeccCCCCcHHHHHHH--HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 103 LTKTDTVFPIDVARRA--MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 103 ~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.||.|+...-....+. -.+.+..+. ..++++.|||.+|+++.+-++|+...+
T Consensus 124 ank~dl~~~l~~~~i~~~~~L~~l~ks---~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 124 ANKQDLPGALSLEEISKALDLEELAKS---HHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred EecCcCccccCHHHHHHhhCHHHhccc---cCceEEEEeccccccHHHHHHHHHHHH
Confidence 9999987322222211 233333232 336999999999999999999987644
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.32 E-value=2.5e-11 Score=81.87 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=69.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
++.+|||+|. +.+..+...+ .+++|+++++.|...+.+-.. ..+...+... +.|+++|.||+|
T Consensus 54 ~l~iwDtaG~----------e~~~~~~~~~---~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~D 120 (182)
T cd04172 54 ELSLWDTSGS----------PYYDNVRPLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 120 (182)
T ss_pred EEEEEECCCc----------hhhHhhhhhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChh
Confidence 4889999998 2233333334 345699999999876532222 1333444432 578999999999
Q ss_pred CCCcHHH----------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHh
Q 031293 108 TVFPIDV----------ARRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~ 156 (162)
+.+.... .-..+..++.....+. .+++++||++|.| +++++..+.+.
T Consensus 121 L~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 121 LRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA--ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC--CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 8532100 0011233334443332 3799999999998 99999988764
No 247
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.32 E-value=8.7e-12 Score=82.63 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=66.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hCCceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~~~~ivv~nK 105 (162)
.+.++||||+.... ......++ +.+|++++++|+..+.+-.. ..++..+.. .+.|+++|+||
T Consensus 48 ~~~i~D~~g~~~~~---------~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQAD---------TEQLERSI---RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccc---------cchHHHHH---HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 37899999984210 11122333 34599999999976432211 123333332 26899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC-CCHHHHHHHHHHhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG-AGIRSLRTVLSKIA 157 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~-~g~~~l~~~i~~~~ 157 (162)
+|+.....+.. +...+.....+ .+++++||++| .|+++++..+.+.+
T Consensus 116 ~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 116 ADLLHYRQVST--EEGEKLASELG---CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CchHHhCccCH--HHHHHHHHHcC---CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 99853222111 11222222222 48999999999 49999999998754
No 248
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.4e-11 Score=79.99 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=74.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec--CCCCCccHHHHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT--KWGVKPRDHELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~--~~~~~~~~~~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.+|||+|+ +.+......|.+.. -++++|.|- ++.+...+.++.+.-+. .++-++++.||+|
T Consensus 56 KlqiwDtaGq----------e~frsv~~syYr~a---~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsD 122 (216)
T KOG0098|consen 56 KLQIWDTAGQ----------ESFRSVTRSYYRGA---AGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSD 122 (216)
T ss_pred EEEEEecCCc----------HHHHHHHHHHhccC---cceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhh
Confidence 5999999999 55677788887776 455666554 44454444333333222 2466899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+..+.++.. +.-+.+..+++. .++.+||++++|+++.+.....
T Consensus 123 L~~rR~Vs~--EEGeaFA~ehgL---ifmETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 123 LEARREVSK--EEGEAFAREHGL---IFMETSAKTAENVEEAFINTAK 165 (216)
T ss_pred hhccccccH--HHHHHHHHHcCc---eeehhhhhhhhhHHHHHHHHHH
Confidence 986665543 455666676665 7889999999999998877654
No 249
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.5e-11 Score=79.85 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh---CCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~---~~~~ivv~n 104 (162)
+-.+.+||..|+ ++++.+.+.|... .++++||+|+.+. +.....++...+... +.|+++..|
T Consensus 60 n~~f~vWDvGGq----------~k~R~lW~~Y~~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 60 NISFTVWDVGGQ----------EKLRPLWKHYFQN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred ceEEEEEecCCC----------cccccchhhhccC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 456999999999 2224455666543 3899999999763 333334444455433 588999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
|.|+.......++.+.+. +.....+.+.+..++|.+|+|+.+.++|+.+.++.
T Consensus 127 KqD~~~als~~ei~~~L~--l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 127 KQDLPGALSAAEITNKLG--LHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hhhccccCCHHHHHhHhh--hhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 999875443333222221 22233355789999999999999999999987753
No 250
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.29 E-value=4.3e-11 Score=88.05 Aligned_cols=151 Identities=21% Similarity=0.117 Sum_probs=84.9
Q ss_pred ChhcccCCCCceeccCCC---CcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKP---GLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~---g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|||+|.|-.+...-+... .+|.....|.. -.++++||.||.|...-+. ..+++++ +....|+++++.
T Consensus 51 fINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl~~~--~~~~yD~fiii~ 122 (376)
T PF05049_consen 51 FINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYLKEV--KFYRYDFFIIIS 122 (376)
T ss_dssp HHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHHHHT--TGGG-SEEEEEE
T ss_pred HHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHHHHc--cccccCEEEEEe
Confidence 589997753222222222 35666666655 2469999999998753221 3333332 344558755554
Q ss_pred ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC------------CcH-HHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV------------FPI-DVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~------------~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
+ +.++..+.+++..+...++|+.+|-+|+|.- ++. ..+++.+++.+.+...+...+++|.+|+..
T Consensus 123 s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~d 200 (376)
T PF05049_consen 123 S--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFD 200 (376)
T ss_dssp S--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTT
T ss_pred C--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCC
Confidence 3 4577888899999999999999999999961 111 134445556666666666667999999877
Q ss_pred C--CCHHHHHHHHHHhhhhhc
Q 031293 143 G--AGIRSLRTVLSKIARFAK 161 (162)
Q Consensus 143 ~--~g~~~l~~~i~~~~~~~k 161 (162)
- .+...|.+.|...++.+|
T Consensus 201 l~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 201 LSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TTSTTHHHHHHHHHHHS-GGG
T ss_pred cccCChHHHHHHHHHHhHHHH
Confidence 4 568889999987776544
No 251
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.2e-11 Score=86.12 Aligned_cols=109 Identities=25% Similarity=0.389 Sum_probs=91.9
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcc--cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS--LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
++++|.+|+ .++.+..+.++.+ .++.++++.|..+++....+++..+...++|+.++++|+|+.+
T Consensus 251 vTfiDLAGh-------------~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 251 VTFIDLAGH-------------AKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD 317 (591)
T ss_pred EEEeecccc-------------hhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc
Confidence 889999999 7888877776654 6999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHhc-----------------------CCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 111 PIDVARRAMQIEESLKAN-----------------------NSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+...+...+++.+.+... ..+..|++.+|+.+|+|++-+...+.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 877777777776665442 33457999999999999998877765
No 252
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.27 E-value=4.3e-11 Score=78.72 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=59.5
Q ss_pred ceeEEEeecCCCCCccHHHHH-HHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 69 KRVCLLIDTKWGVKPRDHELI-SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~-~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
|++++|+|++.+.......+. ..+...++|+++|+||+|+.++.....++..+ .... ..+++++||.+|.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~----~~~~--~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYL----RHSY--PTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHH----HhhC--CceEEEEeccCCcChh
Confidence 688999999887766655555 45666689999999999998654433322222 2111 2478999999999999
Q ss_pred HHHHHHHHh
Q 031293 148 SLRTVLSKI 156 (162)
Q Consensus 148 ~l~~~i~~~ 156 (162)
+|.+.+.+.
T Consensus 75 ~L~~~i~~~ 83 (155)
T cd01849 75 KKESAFTKQ 83 (155)
T ss_pred hHHHHHHHH
Confidence 999988654
No 253
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.25 E-value=5.2e-11 Score=80.10 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=68.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
++.+|||||. +.+..+...+ .+++++++++.|...+-+-.. ..+...+... +.|+++|.||+|
T Consensus 50 ~l~iwDt~G~----------~~~~~~~~~~---~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~D 116 (178)
T cd04131 50 ELSLWDTSGS----------PYYDNVRPLC---YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTD 116 (178)
T ss_pred EEEEEECCCc----------hhhhhcchhh---cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChh
Confidence 4789999998 2223333333 345699999999876433222 2344444432 588999999999
Q ss_pred CCCcHHH----------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHh
Q 031293 108 TVFPIDV----------ARRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~ 156 (162)
+.+.... .-..+..++.....+. .+++++||++|+| +++++..+.++
T Consensus 117 L~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~--~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 117 LRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA--EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred hhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC--CEEEECccCcCCcCHHHHHHHHHHH
Confidence 8532100 0001223333333332 3789999999995 99999998874
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.24 E-value=1.7e-10 Score=83.94 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH-HHHHhhh
Q 031293 96 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT-VLSKIAR 158 (162)
Q Consensus 96 ~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~-~i~~~~~ 158 (162)
.+|+++|+||+|+.+..+.. +.+.. . . ...+++++||+.+.++++|.+ .+.+.++
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~---~~l~~--~-~--~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPDAENNI---SKLRL--K-Y--PDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccChHHHH---HHHHh--h-C--CCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 46999999999986443322 22221 1 1 235899999999999999997 5877654
No 255
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.24 E-value=1.3e-10 Score=78.95 Aligned_cols=90 Identities=17% Similarity=0.043 Sum_probs=58.3
Q ss_pred cccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHH-H-HHHhcCCCCCCeEEeecCCC
Q 031293 66 VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIE-E-SLKANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 66 ~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~~~Sa~~~ 143 (162)
..+|++++|+|+++........+ .....++|+++|+||+|+.+........+.+. . .....+....+++++||++|
T Consensus 33 ~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~ 110 (190)
T cd01855 33 PKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKG 110 (190)
T ss_pred cCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCC
Confidence 45699999999987543433333 12234689999999999975433222222222 1 11222222247899999999
Q ss_pred CCHHHHHHHHHHhh
Q 031293 144 AGIRSLRTVLSKIA 157 (162)
Q Consensus 144 ~g~~~l~~~i~~~~ 157 (162)
.|+++|+++|.+.+
T Consensus 111 ~gi~eL~~~l~~~l 124 (190)
T cd01855 111 WGVEELINAIKKLA 124 (190)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 256
>PTZ00416 elongation factor 2; Provisional
Probab=99.24 E-value=1.7e-10 Score=93.69 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=67.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC-
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV- 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~- 109 (162)
..+.++||||| ..+..+...+.+.+|++++|+|+.+++..++..++..+...++|+++++||+|+.
T Consensus 92 ~~i~liDtPG~-------------~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~ 158 (836)
T PTZ00416 92 FLINLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAI 158 (836)
T ss_pred eEEEEEcCCCH-------------HhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhh
Confidence 35899999999 6777788888888999999999999999999889888888889999999999986
Q ss_pred ---C--c----HHHHHHHHHHHHHHH
Q 031293 110 ---F--P----IDVARRAMQIEESLK 126 (162)
Q Consensus 110 ---~--~----~~~~~~~~~~~~~~~ 126 (162)
. . ....+.++.++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 159 LELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 334566666665554
No 257
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.23 E-value=7.9e-11 Score=88.21 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=92.3
Q ss_pred hhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 2 LNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 2 in~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
+|.++.. ...+-+++.||+.+..-.+.. +|.++||||+-+- +...+...+...-.+++.++ -+|+++.|-+
T Consensus 185 ~~~vtra--dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~--plEdrN~IEmqsITALAHLr--aaVLYfmDLS 258 (620)
T KOG1490|consen 185 NNKVTRA--DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDR--PEEDRNIIEMQIITALAHLR--SAVLYFMDLS 258 (620)
T ss_pred ccccccc--ccccCCcccccchhhhhhhhhheeeeeecCCccccCc--chhhhhHHHHHHHHHHHHhh--hhheeeeech
Confidence 4555555 345777888888666533322 4899999998332 22222223333334455555 4778888876
Q ss_pred CC--CCcc-HHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 79 WG--VKPR-DHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 79 ~~--~~~~-~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
+. .+.. ...++..++.. +.|.|+|+||+|+...+...+.-+.+.+.+...+. ++++..|+.+.+|+.++...-
T Consensus 259 e~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~--v~v~~tS~~~eegVm~Vrt~A 336 (620)
T KOG1490|consen 259 EMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN--VKVVQTSCVQEEGVMDVRTTA 336 (620)
T ss_pred hhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC--ceEEEecccchhceeeHHHHH
Confidence 53 2221 23344555543 68999999999999777665555555555554443 699999999999998877665
Q ss_pred HH
Q 031293 154 SK 155 (162)
Q Consensus 154 ~~ 155 (162)
.+
T Consensus 337 Ce 338 (620)
T KOG1490|consen 337 CE 338 (620)
T ss_pred HH
Confidence 54
No 258
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.22 E-value=9e-10 Score=76.48 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=66.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~--~~~~~ivv~nK~D 107 (162)
.+.+|||+|. +.+..+...+ ...+|+++++.|..++-+-... .+...+.. .+.|+++|.||+|
T Consensus 50 ~L~iwDt~G~----------e~~~~l~~~~---~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~D 116 (222)
T cd04173 50 ELNMWDTSGS----------SYYDNVRPLA---YPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLD 116 (222)
T ss_pred EEEEEeCCCc----------HHHHHHhHHh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcc
Confidence 4789999998 2223333333 3456999999998765222111 12223332 2589999999999
Q ss_pred CCCcHH-HHH---------HHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHh
Q 031293 108 TVFPID-VAR---------RAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~-~~~---------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~ 156 (162)
+..... ... ..+.........+. .+++++||+++. |++++|......
T Consensus 117 L~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~--~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 117 MRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA--VSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred cccchhhhhhhhhccCCccCHHHHHHHHHHcCC--CEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 864211 100 01122222333332 489999999988 599999988764
No 259
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.8e-10 Score=85.07 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=71.1
Q ss_pred cCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 15 SDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 15 ~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
++..|++..-.. |.. +..+.+.||||| +++-+..++.+..+|.++-|||+-.++..++..+++-
T Consensus 62 EkqRGISVtsSVMqF~Y~~~~iNLLDTPGH-------------eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeV 128 (528)
T COG4108 62 EKQRGISVTSSVMQFDYADCLVNLLDTPGH-------------EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEV 128 (528)
T ss_pred HHhcCceEEeeEEEeccCCeEEeccCCCCc-------------cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHH
Confidence 334665443333 333 556999999999 6666666666677799999999999999999999998
Q ss_pred HHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHH
Q 031293 92 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 125 (162)
Q Consensus 92 l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 125 (162)
++..++|++-++||+|...+... +.+..+++.+
T Consensus 129 crlR~iPI~TFiNKlDR~~rdP~-ELLdEiE~~L 161 (528)
T COG4108 129 CRLRDIPIFTFINKLDREGRDPL-ELLDEIEEEL 161 (528)
T ss_pred HhhcCCceEEEeeccccccCChH-HHHHHHHHHh
Confidence 88889999999999998654433 2333444443
No 260
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.21 E-value=1.2e-10 Score=76.90 Aligned_cols=103 Identities=10% Similarity=0.045 Sum_probs=64.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||+|.. . ..+. +.+|++++|.|..+.-+-.. ..++..+.. .++|+++|.||.
T Consensus 48 ~l~i~D~~g~~-------------~--~~~~---~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~ 109 (158)
T cd04103 48 LLLIRDEGGAP-------------D--AQFA---SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQD 109 (158)
T ss_pred EEEEEECCCCC-------------c--hhHH---hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHH
Confidence 47899999982 1 1222 24589999999876432222 223344432 247999999999
Q ss_pred CCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 107 DTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 107 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
|+.. +..+.. +..++...... ..+++++||++|.|+++++..+.+.
T Consensus 110 Dl~~~~~~~v~~--~~~~~~~~~~~--~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 110 AISESNPRVIDD--ARARQLCADMK--RCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HhhhcCCcccCH--HHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHHHhh
Confidence 9842 222221 12222232221 2589999999999999999998754
No 261
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.21 E-value=6e-10 Score=81.31 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||+|.|... ..+. ..+|.+++++++..+ .+.+.... ....+.-++|+||+|+.
T Consensus 148 g~d~viieT~Gv~qs~----------~~i~------~~aD~vlvv~~p~~g---d~iq~~k~-gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 148 GYDVILVETVGVGQSE----------TAVA------GMVDFFLLLQLPGAG---DELQGIKK-GIMELADLIVINKADGD 207 (332)
T ss_pred CCCEEEEECCCCccch----------hHHH------HhCCEEEEEecCCch---HHHHHHHh-hhhhhhheEEeehhccc
Confidence 4579999999997431 1121 135999999763322 22222111 01233348999999998
Q ss_pred CcHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 110 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
...........++..+.... ....|++++||+++.|+++|++.|.+..++
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 76656666666766665422 122589999999999999999999987654
No 262
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.7e-10 Score=73.64 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=79.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHH---HhCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLME---RSQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~---~~~~~~ivv~n 104 (162)
+..+.+||..|+ ...++.|..+...+ +++++++||..+ +......+-..+. ..+.|+++.+|
T Consensus 68 ~~~l~fwdlgGQ------e~lrSlw~~yY~~~-------H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQ------ESLRSLWKKYYWLA-------HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCCh------HHHHHHHHHHHHHh-------ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 556999999999 55555555555444 899999999762 2111111111111 13799999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 160 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~ 160 (162)
|.|+.+..+..+....+.. ......+..++.++||++|+|+++-..|+...++..
T Consensus 135 kqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhhhhHHHHHHHhhh-hhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999766555544433332 344445567999999999999999999998877643
No 263
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.1e-10 Score=72.62 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=75.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh---CCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~---~~~~ivv~nK~ 106 (162)
++.++|..|.+. . ..+.+-|... .|.+++|+|+.+ .++....++..+|.+. +..+++++||.
T Consensus 63 k~~vwdLggqtS------i----rPyWRcYy~d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKq 129 (182)
T KOG0072|consen 63 KFQVWDLGGQTS------I----RPYWRCYYAD---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQ 129 (182)
T ss_pred cceeeEccCccc------c----cHHHHHHhcc---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccc
Confidence 588888888732 2 3444455433 399999999865 3444555666666543 45689999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 160 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~ 160 (162)
|........+....+. +.....+.+.++..||.+|.|+++..+|+.+-++..
T Consensus 130 D~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 130 DYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cchhhhhHHHHHHHhC--hHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 9764333333222221 222233457999999999999999999999877643
No 264
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.18 E-value=2.9e-10 Score=74.80 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=71.3
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh------CCceEEEEe
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS------QTKYQVVLT 104 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~------~~~~ivv~n 104 (162)
+.+|||+|+ +++..+-..+ .+++|+++++.|-.. .+...+.+.-+++... ..|++++.|
T Consensus 60 lQiWDTAGQ----------ERFqsLg~aF---YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 60 LQIWDTAGQ----------ERFQSLGVAF---YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred EEEEecccH----------HHhhhcccce---ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 779999999 4444443333 355699999977543 2333344444444432 478999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
|+|+..........+..++-++..+. .|++.+||+...++++.+..+...
T Consensus 127 KiD~~~~~~r~VS~~~Aq~WC~s~gn--ipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 127 KIDVDGGKSRQVSEKKAQTWCKSKGN--IPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred cccCCCCccceeeHHHHHHHHHhcCC--ceeEEecccccccHHHHHHHHHHH
Confidence 99996532221122333444555544 799999999999999999887653
No 265
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.17 E-value=1.5e-10 Score=78.43 Aligned_cols=111 Identities=16% Similarity=0.057 Sum_probs=65.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||.... ...... ..+.+++++++.|....-+-.. ..++..+... ++|+++|.||+|
T Consensus 50 ~l~i~Dt~g~~~~----------~~~~~~---~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 50 QLALWDTAGQEEY----------ERLRPL---SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEECCCChhc----------cccchh---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 4789999997211 111111 2245688888888764322211 2244444332 589999999999
Q ss_pred CCCcHHH--------HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDV--------ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.... ....+.........+ ..+++++||++|.|++++++++.+.+
T Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 117 LRQDAVAKEEYRTQRFVPIQQGKRVAKEIG--AKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred hhhCcccccccccCCcCCHHHHHHHHHHhC--CcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 8532100 000011222222222 24799999999999999999998654
No 266
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.16 E-value=2.2e-10 Score=74.21 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred HHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 031293 61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 138 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 138 (162)
..+....+|++++|+|++.+....+..+..++... ++|+++|+||+|+.++.... .+.+.+...+ .+++++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~----~~~~~~~~~~---~~ii~i 77 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRK----AWAEYFKKEG---IVVVFF 77 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHH----HHHHHHHhcC---CeEEEE
Confidence 33444566999999999988877777777777765 79999999999997654433 2233333333 478999
Q ss_pred ecCCCCC
Q 031293 139 SSKSGAG 145 (162)
Q Consensus 139 Sa~~~~g 145 (162)
||.++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9988653
No 267
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.7e-09 Score=71.37 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC---CccHHHHHHHHHH-----hCCceEE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV---KPRDHELISLMER-----SQTKYQV 101 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~---~~~~~~~~~~l~~-----~~~~~iv 101 (162)
+....+||.||| .+...-+.+++.....+..++||+|+.... .....-+++.+.. ...|+++
T Consensus 81 s~~~~LVD~PGH----------~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLI 150 (238)
T KOG0090|consen 81 SENVTLVDLPGH----------SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLI 150 (238)
T ss_pred CcceEEEeCCCc----------HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 334799999999 222334555656556789999999986422 1112222333322 2477999
Q ss_pred EEeccCCCCcHHHHHHHHHHHHHHHhc---------------------------------CCCCCCeEEeecCCCCCHHH
Q 031293 102 VLTKTDTVFPIDVARRAMQIEESLKAN---------------------------------NSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 102 v~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~i~~~Sa~~~~g~~~ 148 (162)
+.||.|+......+.+.+.++++++.. ....+.+.+.|++.+ ++++
T Consensus 151 aCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~ 229 (238)
T KOG0090|consen 151 ACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ 229 (238)
T ss_pred EecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence 999999874333333333333333210 111245677788887 8999
Q ss_pred HHHHHHHh
Q 031293 149 LRTVLSKI 156 (162)
Q Consensus 149 l~~~i~~~ 156 (162)
+.+||.+.
T Consensus 230 ~~~wi~~~ 237 (238)
T KOG0090|consen 230 WESWIREA 237 (238)
T ss_pred HHHHHHHh
Confidence 99999875
No 268
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.15 E-value=1.3e-09 Score=69.30 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=81.0
Q ss_pred ceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH-
Q 031293 21 TQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER- 94 (162)
Q Consensus 21 t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~- 94 (162)
|+..+++.+. -...++|.||+.. +..+.+.|.++ ++.+++++||.++ ++....++.+.|..
T Consensus 52 tvGfnmrk~tkgnvtiklwD~gGq~r----------frsmWerycR~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~ 118 (186)
T KOG0075|consen 52 TVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSMWERYCRG---VSAIVYVVDAADPDKLEASRSELHDLLDKP 118 (186)
T ss_pred cccceeEEeccCceEEEEEecCCCcc----------HHHHHHHHhhc---CcEEEEEeecCCcccchhhHHHHHHHhcch
Confidence 4444444441 1367999999932 35556666554 4899999999763 34444555555543
Q ss_pred --hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 95 --SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 95 --~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.++|+++..||.|+.+.-.-....+.. -+.....+.+-.+.+||+...+++.+++||.++..
T Consensus 119 ~l~gip~LVLGnK~d~~~AL~~~~li~rm--gL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 119 SLTGIPLLVLGNKIDLPGALSKIALIERM--GLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred hhcCCcEEEecccccCcccccHHHHHHHh--CccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 379999999999987433222222111 12233345567888999999999999999998764
No 269
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.15 E-value=4.3e-10 Score=90.34 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=55.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||| .++..+...+++.+|++++|+|+.+++...+..++..+...++|.++++||+|..
T Consensus 86 ~~~i~liDtPG~-------------~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGH-------------VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCc-------------cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 345889999999 4555566666677899999999999988888888887776788999999999975
No 270
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.15 E-value=2.7e-09 Score=75.26 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=70.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..++.|+....+.. +.++.++||||+++........+.....+.+++.. ..+++++++...
T Consensus 47 liNaLlg~-~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~-~~idvIL~V~rl 124 (249)
T cd01853 47 TINSIFGE-RKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKK-KTPDVVLYVDRL 124 (249)
T ss_pred HHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhc-cCCCEEEEEEcC
Confidence 58999999 56777887777776665433 55799999999987632221222222334555543 246888888655
Q ss_pred CC-CCCccHHHHHHHHHHh-C----CceEEEEeccCCCC
Q 031293 78 KW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVF 110 (162)
Q Consensus 78 ~~-~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~ 110 (162)
.. .....+..+++.+... + .++++|+||+|...
T Consensus 125 D~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 125 DMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 43 3455556677666542 2 56999999999873
No 271
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.9e-10 Score=90.88 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=74.3
Q ss_pred cCCCCcceEEE---EEEeC-CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 15 SDKPGLTQTIN---FFKLG-TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 15 ~~~~g~t~~~~---~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
+...|.|.... ++.-+ .+++++||||| -+|..+..++++.+|++++|+|+.+++..+....++
T Consensus 56 EqeRGITI~saa~s~~~~~~~~iNlIDTPGH-------------VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r 122 (697)
T COG0480 56 EQERGITITSAATTLFWKGDYRINLIDTPGH-------------VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR 122 (697)
T ss_pred HHhcCCEEeeeeeEEEEcCceEEEEeCCCCc-------------cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH
Confidence 34566665333 23333 68999999999 677777777788889999999999999999999999
Q ss_pred HHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293 91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 91 ~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
.+...++|.++++||+|.+..+ .....+.+...+.
T Consensus 123 qa~~~~vp~i~fiNKmDR~~a~-~~~~~~~l~~~l~ 157 (697)
T COG0480 123 QADKYGVPRILFVNKMDRLGAD-FYLVVEQLKERLG 157 (697)
T ss_pred HHhhcCCCeEEEEECccccccC-hhhhHHHHHHHhC
Confidence 9999999999999999987433 3333344444444
No 272
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.14 E-value=4.6e-10 Score=74.00 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=69.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~D 107 (162)
.+.++|++|... +..+...++ +.+|+++++.|....-+-.. ..++..+... +.|++++.||.|
T Consensus 49 ~l~i~D~~g~~~----------~~~~~~~~~---~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 49 NLEIWDTSGQER----------FDSLRDIFY---RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEETTSGG----------GHHHHHHHH---TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred cccccccccccc----------ccccccccc---cccccccccccccccccccccccccccccccccccccceeeecccc
Confidence 488999999821 233333333 34589999998765321111 1233443322 478999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+...+.. +..++.....+ .+++.+||+++.|+.+++..+.+.+.
T Consensus 116 ~~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 116 LSDEREVSV--EEAQEFAKELG---VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp GGGGSSSCH--HHHHHHHHHTT---SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccccchh--hHHHHHHHHhC---CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 875332221 23344444443 59999999999999999999987653
No 273
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.3e-10 Score=70.17 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh---CCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~---~~~~ivv~n 104 (162)
+-+|..+|..|. +..+.+...|..+. ..++||+|+... +.....++...+... ..++++..|
T Consensus 60 N~kfNvwdvGGq----------d~iRplWrhYy~gt---qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlAN 126 (180)
T KOG0071|consen 60 NVKFNVWDVGGQ----------DKIRPLWRHYYTGT---QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILAN 126 (180)
T ss_pred eeEEeeeeccCc----------hhhhHHHHhhccCC---ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEec
Confidence 446999999998 33356667776655 789999998643 223333444444432 478999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|.|+.+....+++...++ +.....+.+-+.++||.+|.|+.+-+.|+.+.++
T Consensus 127 kQDlp~A~~pqei~d~le--Le~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 127 KQDLPDAMKPQEIQDKLE--LERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred CcccccccCHHHHHHHhc--cccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 999986554444333332 2223345578999999999999999999987664
No 274
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=79.29 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=92.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcc--cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVS--LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
-++++|.+|| +++++..+-++.+ .|...+++.++.++-....+++......++|+.+|++|+|+.
T Consensus 220 viTFIDLAGH-------------EkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 220 VITFIDLAGH-------------EKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eEEEEeccch-------------hhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence 3889999999 8888887666644 799999999999988888899888888899999999999999
Q ss_pred CcHHHHHHHHHHHHHHHhc-----------------------CCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 110 FPIDVARRAMQIEESLKAN-----------------------NSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
...-.++.++.+...+... ..+..|+|.+|..+|++++-|..++.-
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNl 355 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNL 355 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhh
Confidence 8777888777777777652 223579999999999999988877753
No 275
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.10 E-value=1.3e-09 Score=88.68 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=60.3
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
..++++||||| .++..+...+.+.+|++++|+|+.+++...+..++..+...++|+++++||+|..
T Consensus 98 ~~inliDtPGh-------------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGH-------------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCH-------------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 34789999999 8888888888899999999999999999999888888888899999999999987
No 276
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=1.2e-09 Score=68.30 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=75.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~D 107 (162)
++.+|||+|+ +++......|.+.. |..+++.|.....+-.. ..++..+.+. .+.+.++.||+|
T Consensus 48 klqiwdtagq----------erfrsvt~ayyrda---~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d 114 (192)
T KOG0083|consen 48 KLQIWDTAGQ----------ERFRSVTHAYYRDA---DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCD 114 (192)
T ss_pred EEEEeeccch----------HHHhhhhHhhhccc---ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccc
Confidence 5889999999 55666667776554 88888888654322222 2244444443 366889999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 160 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~ 160 (162)
+.++..+.. ++-++....++. |++.+||++|.+++-.+-.|.+.+...
T Consensus 115 ~a~er~v~~--ddg~kla~~y~i---pfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 115 LAHERAVKR--DDGEKLAEAYGI---PFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred cchhhcccc--chHHHHHHHHCC---CceeccccccccHhHHHHHHHHHHHHh
Confidence 975443321 334445555654 999999999999999999988766543
No 277
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=2.5e-09 Score=69.18 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=74.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHH-HhC---Cc-eEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLME-RSQ---TK-YQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~-~~~---~~-~ivv~nK 105 (162)
++.+|||+|+ +++..+.+.|.++. -++++|.|.....+-... .++.... ... ++ +.+|..|
T Consensus 59 klqlwdtagq----------erfrsitksyyrns---vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhK 125 (213)
T KOG0091|consen 59 KLQLWDTAGQ----------ERFRSITKSYYRNS---VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHK 125 (213)
T ss_pred EEEEeeccch----------HHHHHHHHHHhhcc---cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccc
Confidence 5899999999 67788888887655 688888887543211111 1222211 112 23 7999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+|+.+..++.. +..+++...++. .++.+||++|.|+++.+..+.+.+
T Consensus 126 sDL~SqRqVt~--EEaEklAa~hgM---~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 126 SDLQSQRQVTA--EEAEKLAASHGM---AFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cchhhhccccH--HHHHHHHHhcCc---eEEEecccCCCcHHHHHHHHHHHH
Confidence 99986554432 445556666665 899999999999999999887654
No 278
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.09 E-value=1.3e-09 Score=76.42 Aligned_cols=118 Identities=22% Similarity=0.254 Sum_probs=59.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccH--HH---HHHHHHHhCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRD--HE---LISLMERSQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~--~~---~~~~l~~~~~~~ivv~n 104 (162)
.+.++||||+-+.. - +...+...+..+ ...-++++++|+...-.... .. .+..+.+.+.|++.|+|
T Consensus 92 ~y~l~DtPGQiElf------~-~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELF------T-HSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHH------H-HSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEE------E-echhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 59999999992221 1 111122222222 23468899999864322111 11 11233446899999999
Q ss_pred ccCCCCcHHHHHHHHH---------------------HHHHHHhcCCCCC-CeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 105 KTDTVFPIDVARRAMQ---------------------IEESLKANNSLVQ-PVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
|+|++++. .+..+++ +.+.+...+ .. +++++|+.+++|+++|+..+.+++++
T Consensus 165 K~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~f~pls~~~~~~~~~L~~~id~a~~y 238 (238)
T PF03029_consen 165 KIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFG--LVIRFIPLSSKDGEGMEELLAAIDKANQY 238 (238)
T ss_dssp -GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCS--SS---EE-BTTTTTTHHHHHHHHHHHHH-
T ss_pred ccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEECCChHHHHHHHHHHHHHhcC
Confidence 99999733 2111111 111111122 24 89999999999999999999988764
No 279
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.1e-09 Score=69.58 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=72.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||+|. |.+..+...|+++ +++.+++.|....-+-...+ +...+.. .+.|+|+|.||+|
T Consensus 71 klQiwDTagq----------EryrtiTTayyRg---amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCD 137 (193)
T KOG0093|consen 71 KLQIWDTAGQ----------ERYRTITTAYYRG---AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEEecccc----------hhhhHHHHHHhhc---cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccC
Confidence 5889999999 4445555555554 48999999986532222222 2222222 3689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+-++..+.. +..+.+..+.+ +.++.+||+.+-++.++++.+...+
T Consensus 138 md~eRvis~--e~g~~l~~~LG---fefFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 138 MDSERVISH--ERGRQLADQLG---FEFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred CccceeeeH--HHHHHHHHHhC---hHHhhhcccccccHHHHHHHHHHHH
Confidence 976554322 34444455454 3899999999999999999887654
No 280
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=6.2e-10 Score=74.76 Aligned_cols=107 Identities=10% Similarity=0.031 Sum_probs=71.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~D 107 (162)
+..||||+|+ ++++.....|.++. .++++|.|-....+- .-..|+..|+.. ++++++|.||+|
T Consensus 64 kaqIWDTAGQ----------ERyrAitSaYYrgA---vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~D 130 (222)
T KOG0087|consen 64 KAQIWDTAGQ----------ERYRAITSAYYRGA---VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSD 130 (222)
T ss_pred EEeeecccch----------hhhccccchhhccc---ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchh
Confidence 3689999999 55555566666555 677888886543222 223456666543 588999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
|.+...+.. +..+......+ ..++.+||+.+.++++.+..+...
T Consensus 131 L~~lraV~t--e~~k~~Ae~~~---l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 131 LNHLRAVPT--EDGKAFAEKEG---LFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred hhhccccch--hhhHhHHHhcC---ceEEEecccccccHHHHHHHHHHH
Confidence 975332221 23333333333 489999999999999998777543
No 281
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.06 E-value=6.7e-10 Score=71.46 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=67.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH---hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~---~~~~~ivv~nK~ 106 (162)
++.||||+|+ ++++.+-.-|.++. +++++|.|..+. +...-. +...++. ..+-+++|.||+
T Consensus 63 ~L~IWDTAGQ----------ErfHALGPIYYRgS---nGalLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 63 DLHIWDTAGQ----------ERFHALGPIYYRGS---NGALLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKI 128 (218)
T ss_pred eeeeeeccch----------HhhhccCceEEeCC---CceEEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcc
Confidence 4889999999 44444444455554 777888776542 222122 2222322 346789999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
|+-. +.+-..+.........+. .++.+||+.+.|+.++|+.+...
T Consensus 129 DLEe--eR~Vt~qeAe~YAesvGA---~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 129 DLEE--ERQVTRQEAEAYAESVGA---LYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred cHHH--hhhhhHHHHHHHHHhhch---hheecccccccCHHHHHHHHHHH
Confidence 9843 332223334444444443 78999999999999999988654
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.05 E-value=4.4e-09 Score=72.66 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=85.9
Q ss_pred ChhcccCCCCceecc-CCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHH-HhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTS-DKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEY-VSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~-~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vi~vi 75 (162)
++|.|+|.+ ....+ ...+.|+..... .. +..++++||||+++...... + ....+.++ .....+++++++|+
T Consensus 16 ~~N~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~-~~~~i~~~l~~~~~g~ha~llVi 91 (212)
T PF04548_consen 16 LGNSILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--E-IIREIKRCLSLCSPGPHAFLLVI 91 (212)
T ss_dssp HHHHHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--H-HHHHHHHHHHHTTT-ESEEEEEE
T ss_pred HHHHHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--H-HHHHHHHHHHhccCCCeEEEEEE
Confidence 468899984 44433 223344433322 23 66799999999976643221 1 12223333 23456789999999
Q ss_pred ecCCCCCccHHHHHHHHHHh-C----CceEEEEeccCCCCcHHHHHHHH-----HHHHHHHhcCCCCCCeEEeecC----
Q 031293 76 DTKWGVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPIDVARRAM-----QIEESLKANNSLVQPVMMVSSK---- 141 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~Sa~---- 141 (162)
+.. .++..+...++.+... + ..+++|+|..|......++..++ .+++.+...+. .++.++..
T Consensus 92 ~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~---R~~~f~n~~~~~ 167 (212)
T PF04548_consen 92 PLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG---RYHVFNNKTKDK 167 (212)
T ss_dssp ETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT---CEEECCTTHHHH
T ss_pred ecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC---EEEEEeccccch
Confidence 988 7787777777766542 2 34899999999876554433332 35555665554 66666655
Q ss_pred --CCCCHHHHHHHHHHhhh
Q 031293 142 --SGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 142 --~~~g~~~l~~~i~~~~~ 158 (162)
...-+.+|+..|.+..+
T Consensus 168 ~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 168 EKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 22457788888877654
No 283
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.03 E-value=8e-09 Score=72.31 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=61.8
Q ss_pred CceEEEcCCCCcccc---cCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEecc
Q 031293 31 TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~ 106 (162)
..++++||||+.... .+......+..++..|+...+ +++++|+|++.++...+ .++.+.++..+.|.++|+||+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~--~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEE--CLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCcc--CeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECC
Confidence 469999999994331 124455667777888877543 69999999998887766 578888888899999999999
Q ss_pred CCCCcH
Q 031293 107 DTVFPI 112 (162)
Q Consensus 107 Dl~~~~ 112 (162)
|..++.
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 998644
No 284
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.03 E-value=5.2e-09 Score=75.05 Aligned_cols=98 Identities=23% Similarity=0.434 Sum_probs=65.5
Q ss_pred ceEEEcCCCCcccccC----HH----HHHHHHHHHHHHHhcC------cccceeEEEeecC-CCCCccHHHHHHHHHHhC
Q 031293 32 KLCLVDLPGYGFAYAK----EE----VKDAWEELVKEYVSTR------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQ 96 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~----~~----~~~~~~~~~~~~~~~~------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~~ 96 (162)
+++++||||+|+..-. .. ..+.+..++.+-..-. ..+|++++.+++. .++...|.+.++.|.. .
T Consensus 64 ~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~ 142 (281)
T PF00735_consen 64 NLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-R 142 (281)
T ss_dssp EEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-T
T ss_pred EEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-c
Confidence 5899999999976211 11 2233333333322211 3579999999985 4677888877777764 4
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 130 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
+++|-|+.|+|.+...+.....+.+.+.+..++.
T Consensus 143 vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 143 VNVIPVIAKADTLTPEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp SEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT-
T ss_pred ccEEeEEecccccCHHHHHHHHHHHHHHHHHcCc
Confidence 7899999999999999999888999998887765
No 285
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.03 E-value=5.3e-09 Score=77.65 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC
Q 031293 52 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS 130 (162)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 130 (162)
+.+..++..+.. .++++++|+|+.+.......++.+.+. +.|+++|+||+|+.++.. .+...+++++.+...+.
T Consensus 51 e~f~~~l~~~~~---~~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 51 DDFLNLLNSLGD---SNALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred HHHHHHHhhccc---CCcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 344555555533 348999999987655444444444432 689999999999975432 23333344444554443
Q ss_pred CCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 131 LVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
....++.+||++|.|++++++.|.+.
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 33469999999999999999999754
No 286
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.02 E-value=6.8e-10 Score=74.19 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH----H-----hCCceE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME----R-----SQTKYQ 100 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~----~-----~~~~~i 100 (162)
+..+.+||+|||+... ..++.. +.....+.+++||+|+.. ....-.+..++|. . ..+|++
T Consensus 48 ~~~~~lvD~PGH~rlr---------~~~~~~-~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piL 116 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLR---------SKLLDE-LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPIL 116 (181)
T ss_dssp GTCECEEEETT-HCCC---------HHHHHH-HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEE
T ss_pred CCEEEEEECCCcHHHH---------HHHHHh-hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEE
Confidence 4469999999994432 122222 122455799999999974 1111122222222 1 357899
Q ss_pred EEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293 101 VVLTKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 101 vv~nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
|+.||.|+........+...+++++.
T Consensus 117 IacNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 117 IACNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp EEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred EEEeCccccccCCHHHHHHHHHHHHH
Confidence 99999999865544555555555543
No 287
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.00 E-value=6.5e-09 Score=77.89 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=47.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE-----------------------e----CCceEEEcCCCCcccccCHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK-----------------------L----GTKLCLVDLPGYGFAYAKEEVKDA 53 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~-----------------------~----~~~~~ivDtpG~~~~~~~~~~~~~ 53 (162)
|||+|++. .+.++++|++|.+.+... . ..++.++|+||...... .
T Consensus 17 lfn~Lt~~--~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~------~ 88 (396)
T PRK09602 17 FFNAATLA--DVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAH------E 88 (396)
T ss_pred HHHHHhCC--cccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCcc------c
Confidence 68999998 356789999997666421 0 12377999999833210 0
Q ss_pred HHHHHHHHHhcCcccceeEEEeecC
Q 031293 54 WEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
...+-..++...+.+|++++|+|+.
T Consensus 89 g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 89 GRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 1233445555667779999999986
No 288
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.5e-08 Score=65.35 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh---CCc-eEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS---QTK-YQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~---~~~-~ivv~nK 105 (162)
.+.+|||+|+ +++..+...+.+.. -+.+++.|-... +-. ...++..|+.. .-| ++++.||
T Consensus 68 hLQlWDTAGQ----------ERFRSLTTAFfRDA---MGFlLiFDlT~eqSFLn-vrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 68 HLQLWDTAGQ----------ERFRSLTTAFFRDA---MGFLLIFDLTSEQSFLN-VRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEeeeccccH----------HHHHHHHHHHHHhh---ccceEEEeccchHHHHH-HHHHHHHHHHhhccCCCCEEEEcCc
Confidence 3789999999 55555555555543 355666665432 211 12233333321 234 9999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+|+.+...+.+ ....+....++. |++.+||-+|.++++..+.+..+
T Consensus 134 ~DL~~~R~Vs~--~qa~~La~kygl---PYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 134 ADLEDQRVVSE--DQAAALADKYGL---PYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred cchhhhhhhhH--HHHHHHHHHhCC---CeeeeccccCcCHHHHHHHHHHH
Confidence 99986665543 334455666665 99999999999988876665543
No 289
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.98 E-value=2e-08 Score=69.44 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=65.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH--hCCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER--SQTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~--~~~~~ivv~nK~Dl 108 (162)
.+.++||||. +.+..+...+.. .+++++++.|..+..+-... .++..+.. .++|++++.||+|+
T Consensus 59 ~i~~~Dt~g~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 59 CFNVWDTAGQ----------EKFGGLRDGYYI---KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred EEEEEECCCc----------hhhhhhhHHHhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccC
Confidence 5889999997 122333333433 34889999998764322111 22222221 25889999999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.+.....+.. ......+ ..++.+||++|.|+++.+.+|.+.+
T Consensus 126 ~~~~~~~~~~----~~~~~~~---~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 126 KDRQVKARQI----TFHRKKN---LQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred ccccCCHHHH----HHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432111111 1222222 4789999999999999999988654
No 290
>PRK12289 GTPase RsgA; Reviewed
Probab=98.98 E-value=7.3e-09 Score=76.41 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=58.3
Q ss_pred CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
..++|.+++|+|..++. .... ..++..+...++|+++|+||+|++++.+... +.+.+...+ .+++++||.+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~----~~~~~~~~g---~~v~~iSA~t 159 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQ----WQDRLQQWG---YQPLFISVET 159 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHH----HHHHHHhcC---CeEEEEEcCC
Confidence 35579999999987543 2211 2344444556899999999999986544332 223333333 3789999999
Q ss_pred CCCHHHHHHHHHH
Q 031293 143 GAGIRSLRTVLSK 155 (162)
Q Consensus 143 ~~g~~~l~~~i~~ 155 (162)
+.|+++|+..+..
T Consensus 160 g~GI~eL~~~L~~ 172 (352)
T PRK12289 160 GIGLEALLEQLRN 172 (352)
T ss_pred CCCHHHHhhhhcc
Confidence 9999999998865
No 291
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.96 E-value=1e-08 Score=72.29 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=57.9
Q ss_pred CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
.+++|.+++|.|..++. +... ..++..+...++|+++|+||+|+.++..... +.. +.....+ .+++.+||++
T Consensus 34 ~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~--~~~-~~~~~~g---~~v~~~SAkt 107 (245)
T TIGR00157 34 VANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEK--EQL-DIYRNIG---YQVLMTSSKN 107 (245)
T ss_pred cccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHH--HHH-HHHHHCC---CeEEEEecCC
Confidence 34569999999988644 2222 2234445556899999999999976544331 112 2222232 4899999999
Q ss_pred CCCHHHHHHHHHH
Q 031293 143 GAGIRSLRTVLSK 155 (162)
Q Consensus 143 ~~g~~~l~~~i~~ 155 (162)
|.|++++++.+.+
T Consensus 108 g~gi~eLf~~l~~ 120 (245)
T TIGR00157 108 QDGLKELIEALQN 120 (245)
T ss_pred chhHHHHHhhhcC
Confidence 9999999998864
No 292
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.3e-08 Score=74.42 Aligned_cols=104 Identities=19% Similarity=0.346 Sum_probs=72.3
Q ss_pred ceEEEcCCCCccccc--------CHHHHHHHHHHHHHHHhcC------cccceeEEEeecC-CCCCccHHHHHHHHHHhC
Q 031293 32 KLCLVDLPGYGFAYA--------KEEVKDAWEELVKEYVSTR------VSLKRVCLLIDTK-WGVKPRDHELISLMERSQ 96 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~~ 96 (162)
+++++||||+|+..- ..-..+.+..++.+-.+-. .+++++++.|.+. .++.+.|.+.++.+.. .
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~ 158 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-K 158 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-c
Confidence 589999999999721 1112333343333321111 2578888888875 4688888888777763 6
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 139 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 139 (162)
+.+|-|+.|+|.+.+.+.....+.+++.+..+.. +++...
T Consensus 159 vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI---~vf~fp 198 (366)
T KOG2655|consen 159 VNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNI---KVFDFP 198 (366)
T ss_pred ccccceeeccccCCHHHHHHHHHHHHHHHHHcCc---ceecCC
Confidence 7789999999999999999888999888887654 444443
No 293
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.95 E-value=4.6e-09 Score=65.08 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=71.9
Q ss_pred EEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH
Q 031293 34 CLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113 (162)
Q Consensus 34 ~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~ 113 (162)
..+||||-... ........+.....+|+++++..+.++.+....-++.. ...|+|-|++|+|+.+..+
T Consensus 40 ~~IDTPGEy~~---------~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~---~~k~vIgvVTK~DLaed~d 107 (148)
T COG4917 40 GDIDTPGEYFE---------HPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDI---GVKKVIGVVTKADLAEDAD 107 (148)
T ss_pred cccCCchhhhh---------hhHHHHHHHHHhhccceeeeeecccCccccCCcccccc---cccceEEEEecccccchHh
Confidence 47899996221 02334444444556799999988887765544444332 3567999999999986555
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
++....+ +.+-+. .+||.+|+.+..|+++|++.+...
T Consensus 108 I~~~~~~----L~eaGa--~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 108 ISLVKRW----LREAGA--EPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHHHH----HHHcCC--cceEEEeccCcccHHHHHHHHHhh
Confidence 5544333 333443 599999999999999999999764
No 294
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=4.5e-08 Score=62.54 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=70.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHHh---CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMERS---QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~D 107 (162)
++.+|||+|+ +++..+...|.+.. +.++++.|.+...+- --.+++..+... ++--|+|.||+|
T Consensus 57 klqiwdtagq----------erfrsitqsyyrsa---halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d 123 (213)
T KOG0095|consen 57 KLQIWDTAGQ----------ERFRSITQSYYRSA---HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKID 123 (213)
T ss_pred EEEEeeccch----------HHHHHHHHHHhhhc---ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccc
Confidence 5899999999 66677788887655 778888786543211 123455555433 344699999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+.++.++.+.+ -+.+..... .-+..+||+..+++++|+..+.-
T Consensus 124 ~~drrevp~qi---geefs~~qd--myfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 124 LADRREVPQQI---GEEFSEAQD--MYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhhhhHHH---HHHHHHhhh--hhhhhhcccchhhHHHHHHHHHH
Confidence 98776665432 222222111 35678999999999999987753
No 295
>PTZ00258 GTP-binding protein; Provisional
Probab=98.93 E-value=2.5e-08 Score=74.25 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=48.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--------------------CCceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 60 (162)
|||+|++. .+.++++|++|++.+.... ..++.++||||+....... ..+..+
T Consensus 37 LfnaLt~~--~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g------~gLg~~ 108 (390)
T PTZ00258 37 TFNALCKQ--QVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEG------EGLGNA 108 (390)
T ss_pred HHHHHhcC--cccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcch------hHHHHH
Confidence 68999988 4689999999987665322 1248999999984331110 223345
Q ss_pred HHhcCcccceeEEEeecC
Q 031293 61 YVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~ 78 (162)
++...+.+|++++|+|+.
T Consensus 109 fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 109 FLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHHCCEEEEEEeCC
Confidence 555567789999999984
No 296
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=8.1e-09 Score=66.15 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=66.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHH---HHHHhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELIS---LMERSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~---~l~~~~~~~ivv~nK~ 106 (162)
++.+|||+|+ +++....+.|.++.. +.++|.|... .+..... ++. .+...++-++++.||.
T Consensus 59 KLQIWDTAGQ----------ErFRSVtRsYYRGAA---GAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKk 124 (214)
T KOG0086|consen 59 KLQIWDTAGQ----------ERFRSVTRSYYRGAA---GALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKK 124 (214)
T ss_pred EEEEeecccH----------HHHHHHHHHHhcccc---ceEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChh
Confidence 4889999999 677788888888774 5566666543 3322222 222 2233345588899999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+-...++.- .....++.+. ......+||++|+++++.+-...+
T Consensus 125 DL~~~R~Vtf--lEAs~FaqEn---el~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 125 DLDPEREVTF--LEASRFAQEN---ELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred hcChhhhhhH--HHHHhhhccc---ceeeeeecccccccHHHHHHHHHH
Confidence 9965444321 1222333332 247888999999999987766544
No 297
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.92 E-value=7e-08 Score=70.26 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=81.5
Q ss_pred ceEEEcCCCCcccc---c-CHHH----HHHHHHHHHHHHhcC-------cccceeEEEeecC-CCCCccHHHHHHHHHHh
Q 031293 32 KLCLVDLPGYGFAY---A-KEEV----KDAWEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMERS 95 (162)
Q Consensus 32 ~~~ivDtpG~~~~~---~-~~~~----~~~~~~~~~~~~~~~-------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~ 95 (162)
+++++||||+|+.. . -... .+.+..++.+-.+-. .+++++++.+.+. .++...+.+.+..+..
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~- 161 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK- 161 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-
Confidence 58999999999872 1 1222 233333333322211 3468888888864 5788888888777763
Q ss_pred CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeE-EeecCCC-CCHHHHHHHHHHhhhhh
Q 031293 96 QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM-MVSSKSG-AGIRSLRTVLSKIARFA 160 (162)
Q Consensus 96 ~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~Sa~~~-~g~~~l~~~i~~~~~~~ 160 (162)
.+.+|-|+.|+|.....+.....+.+++.+..+.. ++| |.+.-.. .-.-+.-..+.++++|+
T Consensus 162 ~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI---~vf~pyd~e~~~~e~~e~~~~l~~~~PFA 225 (373)
T COG5019 162 RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNI---PVFDPYDPEDDEDESLEENQDLRSLIPFA 225 (373)
T ss_pred ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCC---ceeCCCCccccchhhHHHHHHHhhcCCeE
Confidence 56789999999999999999999999988887765 444 3332221 12334455566666654
No 298
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.4e-08 Score=64.29 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCc---eEEEEec
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK---YQVVLTK 105 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~---~ivv~nK 105 (162)
+-++.+|||+|+ +++....+.|.++.. +.+.|.|....-+-.. ..++...+....| ++++.||
T Consensus 59 kiklqiwdtagq----------erfravtrsyyrgaa---galmvyditrrstynhlsswl~dar~ltnpnt~i~lignk 125 (215)
T KOG0097|consen 59 KIKLQIWDTAGQ----------ERFRAVTRSYYRGAA---GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNK 125 (215)
T ss_pred EEEEEEeecccH----------HHHHHHHHHHhcccc---ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecch
Confidence 446899999999 666777888887765 4455555433211111 1233333333334 7888999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
.|+-+..++. .+..+++..+++. .+..+||++|+++++.+-
T Consensus 126 adle~qrdv~--yeeak~faeengl---~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 126 ADLESQRDVT--YEEAKEFAEENGL---MFLEASAKTGQNVEDAFL 166 (215)
T ss_pred hhhhhcccCc--HHHHHHHHhhcCe---EEEEecccccCcHHHHHH
Confidence 9996544322 2344445555554 889999999999987553
No 299
>PRK00098 GTPase RsgA; Reviewed
Probab=98.92 E-value=1.1e-08 Score=74.16 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=57.7
Q ss_pred cccceeEEEeecCCCCCccH--HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293 66 VSLKRVCLLIDTKWGVKPRD--HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 66 ~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~ 143 (162)
.++|.+++|+|+.++..... ..++..+...++|+++|+||+|+.+.... .+.+.+.....+ .+++++||+++
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~~g---~~v~~vSA~~g 152 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEE---ARELLALYRAIG---YDVLELSAKEG 152 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHH---HHHHHHHHHHCC---CeEEEEeCCCC
Confidence 56799999999976532222 23445556678999999999999743321 112222333333 48999999999
Q ss_pred CCHHHHHHHHHH
Q 031293 144 AGIRSLRTVLSK 155 (162)
Q Consensus 144 ~g~~~l~~~i~~ 155 (162)
.|+++|++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988754
No 300
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=6.9e-08 Score=66.63 Aligned_cols=128 Identities=19% Similarity=0.271 Sum_probs=84.8
Q ss_pred CceEEEcCCCCcccc------cC--HHHHHHHHHHHHHHHhcC-------cccceeEEEeecC-CCCCccHHHHHHHHHH
Q 031293 31 TKLCLVDLPGYGFAY------AK--EEVKDAWEELVKEYVSTR-------VSLKRVCLLIDTK-WGVKPRDHELISLMER 94 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~------~~--~~~~~~~~~~~~~~~~~~-------~~~~~vi~vid~~-~~~~~~~~~~~~~l~~ 94 (162)
-+++++||||+|+.- .+ .-..+.+++++++.+... ...+|+++.+.+. ..+...|.++++.|.+
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~ 183 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE 183 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh
Confidence 368999999999861 11 123556666666644322 3467887777764 4577888888887764
Q ss_pred hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCH-HHHHHHHHHhhhhhcC
Q 031293 95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI-RSLRTVLSKIARFAKV 162 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~-~~l~~~i~~~~~~~k~ 162 (162)
-+.++-|+-|+|.+.-++.....+.+++.+..++. .+++--+-...-= ..+-+++.+.++|+.|
T Consensus 184 -vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i---~vYPq~~fded~ed~~lN~kvR~~iPFAVV 248 (336)
T KOG1547|consen 184 -VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGI---DVYPQDSFDEDLEDKTLNDKVRESIPFAVV 248 (336)
T ss_pred -hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCc---ccccccccccchhHHHHHHHHHhhCCeEEe
Confidence 35678888999998777777888889888888775 5555544433221 2345566666666543
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.89 E-value=3e-08 Score=73.74 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=80.8
Q ss_pred ChhcccCC----CCce-----------eccCCCC---cceEEEEE-----Ee------CCceEEEcCCCCccccc-C-HH
Q 031293 1 MLNALTRQ----WGVV-----------RTSDKPG---LTQTINFF-----KL------GTKLCLVDLPGYGFAYA-K-EE 49 (162)
Q Consensus 1 lin~L~~~----~~~~-----------~~~~~~g---~t~~~~~~-----~~------~~~~~ivDtpG~~~~~~-~-~~ 49 (162)
|||+++++ + .+ .+++.+| +|++..+. .+ .-++.++||+|+..... + .+
T Consensus 33 fIn~fm~q~VlP~-i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r 111 (492)
T TIGR02836 33 FIKKFMELLVLPN-ISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYME 111 (492)
T ss_pred HHHHHHhhhcccc-ccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCcccee
Confidence 57777777 3 34 6888999 88888771 11 24699999999955421 1 11
Q ss_pred -----------------HHHHHHHHHHHHHhcCcccceeEEEe-ecC------CCCCccHHHHHHHHHHhCCceEEEEec
Q 031293 50 -----------------VKDAWEELVKEYVSTRVSLKRVCLLI-DTK------WGVKPRDHELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 50 -----------------~~~~~~~~~~~~~~~~~~~~~vi~vi-d~~------~~~~~~~~~~~~~l~~~~~~~ivv~nK 105 (162)
..+.-+.-.++.+.. .+++.++|. |++ +........+...|++.++|+++++||
T Consensus 112 ~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~ 189 (492)
T TIGR02836 112 EDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNS 189 (492)
T ss_pred ccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEEC
Confidence 111111123344431 247777777 774 455666777889999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
.|-..+. ..+..+.+. ..++ .+++++||.+
T Consensus 190 ~dp~~~e-t~~l~~~l~---eky~---vpvl~v~c~~ 219 (492)
T TIGR02836 190 THPYHPE-TEALRQELE---EKYD---VPVLAMDVES 219 (492)
T ss_pred cCCCCch-hHHHHHHHH---HHhC---CceEEEEHHH
Confidence 9943222 222222222 2222 5888888755
No 302
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.89 E-value=2.3e-08 Score=63.79 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=74.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHh--CCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
++.||||+|. +++..+...|.++- +++++|.|...+.+ ..-..+++.++.. ..|-++|.||.|.
T Consensus 58 kLqIwDtAGq----------ErFrtitstyyrgt---hgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~ 124 (198)
T KOG0079|consen 58 KLQIWDTAGQ----------ERFRTITSTYYRGT---HGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD 124 (198)
T ss_pred EEEEeecccH----------HHHHHHHHHHccCC---ceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCC
Confidence 4889999999 66677777777665 77788878654321 1223455666543 3778999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.++..+.. ++.+.....-+ ...|.+||+...+++..+.-|.+++
T Consensus 125 ~~RrvV~t--~dAr~~A~~mg---ie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 125 PERRVVDT--EDARAFALQMG---IELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred ccceeeeh--HHHHHHHHhcC---chheehhhhhcccchHHHHHHHHHH
Confidence 86554322 23333333333 4889999999999999888887654
No 303
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.89 E-value=2.2e-08 Score=72.23 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=58.3
Q ss_pred CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
..++|.+++|+|+.++. +... ..++..+...++|+++|+||+|+.++..... ........+ .+++++||++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~----~~~~~~~~g---~~v~~vSA~~ 148 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEEL----ELVEALALG---YPVLAVSAKT 148 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHH----HHHHHHhCC---CeEEEEECCC
Confidence 35679999999998765 3222 2345555667899999999999976532211 111122222 4899999999
Q ss_pred CCCHHHHHHHHHH
Q 031293 143 GAGIRSLRTVLSK 155 (162)
Q Consensus 143 ~~g~~~l~~~i~~ 155 (162)
+.|+++|+..+..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999988864
No 304
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.88 E-value=1.2e-07 Score=68.88 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||.|... .... ..+|.++++..+.. ..+.+.+.. ...++|.++|+||+|+.
T Consensus 126 g~D~viidT~G~~~~e---------~~i~-------~~aD~i~vv~~~~~---~~el~~~~~-~l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---------VDIA-------NMADTFVVVTIPGT---GDDLQGIKA-GLMEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCchhh---------hHHH-------HhhceEEEEecCCc---cHHHHHHHH-HHhhhccEEEEEccccc
Confidence 4579999999985321 1111 12377777754432 122222211 12368889999999998
Q ss_pred CcHHHHHHHHHHHHHHH---hc-CCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 110 FPIDVARRAMQIEESLK---AN-NSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
...........+...+. .. .....+++++||+++.|+++++++|.+...
T Consensus 186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 54432211111111111 11 111247999999999999999999987654
No 305
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.87 E-value=5.5e-09 Score=83.91 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=53.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+........+.+|++++|+|+..++...+..++..+...++|.++++||+|..
T Consensus 85 ~~~i~liDTPG~-------------~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGH-------------VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCc-------------cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 456899999999 3333344445566799999999999888888888877777788999999999986
No 306
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.7e-08 Score=74.13 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=85.9
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-----C--Ccc
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPR 84 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-----~--~~~ 84 (162)
....|.|.......+ .+++++.|+||| ..++.+++.++.++|+.++|+.++.+ + ..+
T Consensus 138 eR~kgKtvEvGrA~FEte~~~ftiLDApGH-------------k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ 204 (501)
T KOG0459|consen 138 ERDKGKTVEVGRAYFETENKRFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ 204 (501)
T ss_pred hhhccceeeeeeEEEEecceeEEeeccCcc-------------cccchhhccccchhhhhhhhhhhhhchhhcccccccc
Confidence 345667766554333 567999999999 88899999999999999999998642 1 224
Q ss_pred HHHHHHHHHHhCCc-eEEEEeccCCC----CcHHHHHHHHHHHHHHHh---cCCCCCCeEEeecCCCCCHHHHHH
Q 031293 85 DHELISLMERSQTK-YQVVLTKTDTV----FPIDVARRAMQIEESLKA---NNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 85 ~~~~~~~l~~~~~~-~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
..++....+..++. .++++||+|-. +...+.+..+.+..++.. +......++++|..+|.++.+..+
T Consensus 205 TREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 205 TREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 45555555544544 79999999975 233345555555555543 233345789999999999877543
No 307
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.87 E-value=1.8e-09 Score=68.21 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=72.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHH---hCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMER---SQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~---~~~~~ivv~nK 105 (162)
-+++++|..|.. .. ..+..+|... .|.+++|||+.+. +.....++.+.+.+ ..+|+.+..||
T Consensus 62 f~LnvwDiGGqr------~I----RpyWsNYyen---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfank 128 (185)
T KOG0074|consen 62 FHLNVWDIGGQR------GI----RPYWSNYYEN---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANK 128 (185)
T ss_pred EEEEEEecCCcc------cc----chhhhhhhhc---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhh
Confidence 468999999982 22 3445555443 3999999998652 11222223233332 35899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.|++.....+.....+ .+.....+.+.+-.+||.+++|...-..|+....
T Consensus 129 Qdlltaa~~eeia~kl--nl~~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 129 QDLLTAAKVEEIALKL--NLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hHHHhhcchHHHHHhc--chhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 9987555444332222 2334445678999999999999998888887543
No 308
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.86 E-value=1e-07 Score=65.31 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=55.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHH----------------
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMER---------------- 94 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~---------------- 94 (162)
.+.+|||+|. +.+..+...+++ +++++++|.|....-+-... .++..+..
T Consensus 55 ~l~IwDtaG~----------e~~~~l~~~~yr---~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~ 121 (202)
T cd04102 55 FVELWDVGGS----------ESVKSTRAVFYN---QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD 121 (202)
T ss_pred EEEEEecCCc----------hhHHHHHHHHhC---cCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 4789999998 233444444544 45999999998764322222 23333322
Q ss_pred ------hCCceEEEEeccCCCCcHHHHH--HHHHHHHHHHhcCCCCCCeEEeecCCC
Q 031293 95 ------SQTKYQVVLTKTDTVFPIDVAR--RAMQIEESLKANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 95 ------~~~~~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~Sa~~~ 143 (162)
.++|+++|.||+|+.++...+. ............+ .+-+..+|.+.
T Consensus 122 ~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~---~~~i~~~c~~~ 175 (202)
T cd04102 122 SEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGN---AEEINLNCTNG 175 (202)
T ss_pred ccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcC---CceEEEecCCc
Confidence 2589999999999975432221 1111112223333 36777777764
No 309
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.86 E-value=5.4e-09 Score=67.50 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=70.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec--CCCCCccHHHHHHHHHHh----CCceEEEEe
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT--KWGVKPRDHELISLMERS----QTKYQVVLT 104 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~--~~~~~~~~~~~~~~l~~~----~~~~ivv~n 104 (162)
.++.+|||+|+ ++++.+...|.++. .++++|.|. ++.+...+ .+++.+... ++-.++|.|
T Consensus 60 ~KlaiWDTAGq----------ErFRtLTpSyyRga---qGiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgN 125 (209)
T KOG0080|consen 60 LKLAIWDTAGQ----------ERFRTLTPSYYRGA---QGIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGN 125 (209)
T ss_pred EEEEEEeccch----------HhhhccCHhHhccC---ceeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcc
Confidence 36899999999 55666677787766 566777664 44555554 344555443 234688999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+|.-++..+. .+.-.++...+. .-++.+||++.+|+...++-+.+.+
T Consensus 126 KiDkes~R~V~--reEG~kfAr~h~---~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 126 KIDKESERVVD--REEGLKFARKHR---CLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred cccchhccccc--HHHHHHHHHhhC---cEEEEcchhhhccHHHHHHHHHHHH
Confidence 99964322221 133344555454 4789999999999988877776543
No 310
>PRK13796 GTPase YqeH; Provisional
Probab=98.85 E-value=6.4e-08 Score=72.06 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=59.2
Q ss_pred HhcCcccc-eeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293 62 VSTRVSLK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVS 139 (162)
Q Consensus 62 ~~~~~~~~-~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~S 139 (162)
+......+ .+++|+|+.+........+.+.. .+.|+++|+||+|+.+... .+...++.+......+....+++.+|
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vS 140 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLIS 140 (365)
T ss_pred HHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEE
Confidence 33333334 89999999874433332232222 2689999999999975332 22222333434444443334789999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 031293 140 SKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 140 a~~~~g~~~l~~~i~~~ 156 (162)
|+++.|++++++.|.+.
T Consensus 141 Ak~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 141 AQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999764
No 311
>PRK12288 GTPase RsgA; Reviewed
Probab=98.84 E-value=6.8e-08 Score=71.30 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=58.3
Q ss_pred cccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 031293 66 VSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 144 (162)
Q Consensus 66 ~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~ 144 (162)
.++|.+++|.+....++....+ ++..+...++|.++|+||+|+.+..+.... ..+.+.+...+ .+++++||+++.
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~-~~~~~~y~~~g---~~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFV-NEQLDIYRNIG---YRVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHH-HHHHHHHHhCC---CeEEEEeCCCCc
Confidence 5679988888876544433322 344455567999999999999864432221 22222233233 489999999999
Q ss_pred CHHHHHHHHHHh
Q 031293 145 GIRSLRTVLSKI 156 (162)
Q Consensus 145 g~~~l~~~i~~~ 156 (162)
|+++|++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998753
No 312
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.83 E-value=2e-07 Score=64.51 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=69.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHHHHh---CCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLMERS---QTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l~~~---~~~~ivv~nK~ 106 (162)
++.+|||+|+ +.+..++..|..+. ++++++.|... ........+...+... ..|++++.||+
T Consensus 55 ~~~~~Dt~gq----------~~~~~~~~~y~~~~---~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (219)
T COG1100 55 KLQLWDTAGQ----------EEYRSLRPEYYRGA---NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121 (219)
T ss_pred EEEeecCCCH----------HHHHHHHHHHhcCC---CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 3889999999 34455566665544 78888877654 2223334445555443 48999999999
Q ss_pred CCCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecC--CCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~--~~~g~~~l~~~i~~~~ 157 (162)
|+.......... ................++.+|+. .+.++.+++..+.+.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred ccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 998654321111 00011111111111238999999 9999999998887655
No 313
>PRK01889 GTPase RsgA; Reviewed
Probab=98.81 E-value=6.3e-08 Score=71.85 Aligned_cols=82 Identities=24% Similarity=0.307 Sum_probs=60.2
Q ss_pred cccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 031293 66 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 144 (162)
Q Consensus 66 ~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~ 144 (162)
.++|.+++|+++..++.... ..++..+...++|.++|+||+|+.+... ...+.+... . ...+++++|+.++.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~--~~~~~~~~~--~---~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAE--EKIAEVEAL--A---PGVPVLAVSALDGE 183 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHH--HHHHHHHHh--C---CCCcEEEEECCCCc
Confidence 57899999999976665533 3456667778899999999999986422 222333332 1 12589999999999
Q ss_pred CHHHHHHHHH
Q 031293 145 GIRSLRTVLS 154 (162)
Q Consensus 145 g~~~l~~~i~ 154 (162)
|+++|..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999999985
No 314
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.77 E-value=2.8e-07 Score=66.58 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=66.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE---EeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF---KLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~---~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
++|+|+|+ ..+.++..++.|...... ..+.++.++||||+.+.. ...+.....++.++.. .++|++++|...
T Consensus 54 liNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik~~l~~-~g~DvVLyV~rL 128 (313)
T TIGR00991 54 TVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIKRFLLG-KTIDVLLYVDRL 128 (313)
T ss_pred HHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHHHHhhc-CCCCEEEEEecc
Confidence 57999998 566677776655433222 236679999999996541 1122223345555443 357999999543
Q ss_pred CC-CCCccHHHHHHHHHHh-----CCceEEEEeccCCCC
Q 031293 78 KW-GVKPRDHELISLMERS-----QTKYQVVLTKTDTVF 110 (162)
Q Consensus 78 ~~-~~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~ 110 (162)
.. .+...+.+.++.+... ..+.++++|+.|..+
T Consensus 129 D~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 129 DAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred CcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 22 3555666666665542 357999999999773
No 315
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.9e-08 Score=77.19 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=60.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||| -++..+..++++-.|++++|+++-.++..+..-....+.+.++|.+..+||+|.+
T Consensus 103 ~~~iNiIDTPGH-------------vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 103 DYRINIIDTPGH-------------VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM 169 (721)
T ss_pred cceeEEecCCCc-------------eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc
Confidence 557999999999 5555565566666799999999999998888888888999999999999999987
Q ss_pred CcHHH
Q 031293 110 FPIDV 114 (162)
Q Consensus 110 ~~~~~ 114 (162)
..+.+
T Consensus 170 Ga~~~ 174 (721)
T KOG0465|consen 170 GASPF 174 (721)
T ss_pred CCChH
Confidence 55544
No 316
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.73 E-value=4.6e-08 Score=66.68 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~ 106 (162)
.+.++||+|. +.+..+...|++.. ++.++|.+..+..+=.. ..+.+.+. ...+|+++|.||+
T Consensus 52 ~l~ilDt~g~----------~~~~~~~~~~~~~~---~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~ 118 (196)
T KOG0395|consen 52 MLEILDTAGQ----------EEFSAMRDLYIRNG---DGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKC 118 (196)
T ss_pred EEEEEcCCCc----------ccChHHHHHhhccC---cEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcc
Confidence 3779999995 22345556666655 56666665543211111 12223332 1258999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
|+.....+.. +..++...... .+++.+||+...++++++..+.+.+..
T Consensus 119 Dl~~~R~V~~--eeg~~la~~~~---~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 119 DLERERQVSE--EEGKALARSWG---CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cchhccccCH--HHHHHHHHhcC---CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 9975433322 22333333222 479999999999999999999876653
No 317
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.1e-08 Score=77.86 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=58.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
-++++||||| ..+..++.+.++.+|++++++|+.++++-....+++..-..+.|+.+|+||+|.+
T Consensus 198 l~nilDTPGH-------------VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 198 LMNILDTPGH-------------VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeeeecCCCc-------------ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 3889999999 7778888888888999999999999999988888887777799999999999964
No 318
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.73 E-value=3.3e-08 Score=66.04 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=42.8
Q ss_pred ceeEEEeecCCCCCccHHHHHHH--HHHhCCceEEEEeccCCCCcHHHHHHHHHHHH
Q 031293 69 KRVCLLIDTKWGVKPRDHELISL--MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 123 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~--l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~ 123 (162)
|++++|+|++.++...+..+.+. +...+.|+++|+||+|++++.....+.+.+++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~ 57 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRR 57 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHh
Confidence 68999999999888877777776 44457899999999999977665555555443
No 319
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.4e-07 Score=72.89 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+..+.++|+||| -+|--+...+.+-+|+.++++|+-+++..++...+...-..+...++|+||+|
T Consensus 71 ~~~~nlidspgh-------------vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 71 DYLINLIDSPGH-------------VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred ceEEEEecCCCc-------------cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhh
Confidence 445899999999 33334444445567999999999999999888888755555788999999999
No 320
>PLN00023 GTP-binding protein; Provisional
Probab=98.65 E-value=2.9e-07 Score=66.91 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=43.7
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh---------------C
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS---------------Q 96 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~---------------~ 96 (162)
+.||||+|+ +.+..+...+++ +++++++|.|....-+-... .++..+... +
T Consensus 85 LqIWDTAGq----------ErfrsL~~~yyr---~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ 151 (334)
T PLN00023 85 VELWDVSGH----------ERYKDCRSLFYS---QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLP 151 (334)
T ss_pred EEEEECCCC----------hhhhhhhHHhcc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 889999999 333444555543 46999999998764322222 234444432 3
Q ss_pred CceEEEEeccCCCCc
Q 031293 97 TKYQVVLTKTDTVFP 111 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~ 111 (162)
+|+++|.||+|+..+
T Consensus 152 ipIILVGNK~DL~~~ 166 (334)
T PLN00023 152 VPYIVIGNKADIAPK 166 (334)
T ss_pred CcEEEEEECcccccc
Confidence 789999999999754
No 321
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.57 E-value=1.2e-06 Score=61.05 Aligned_cols=128 Identities=12% Similarity=0.048 Sum_probs=65.6
Q ss_pred CcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH----H
Q 031293 19 GLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----S 90 (162)
Q Consensus 19 g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~----~ 90 (162)
|.|.++..-.+ .-.+.+||+||+...-.. .+....... .+.+.++++|+|+...-...+...+ +
T Consensus 32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-----~~~~~~~~i---f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~ 103 (232)
T PF04670_consen 32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-----YFNSQREEI---FSNVGVLIYVFDAQSDDYDEDLAYLSDCIE 103 (232)
T ss_dssp ----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-----THTCCHHHH---HCTESEEEEEEETT-STCHHHHHHHHHHHH
T ss_pred CCcCCceEEEEecCCCcEEEEEEcCCccccccc-----cccccHHHH---HhccCEEEEEEEcccccHHHHHHHHHHHHH
Confidence 44554444333 336899999999432100 000001111 2456899999999843223333332 2
Q ss_pred HHHHh--CCceEEEEeccCCCCcHHHHHHH----HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 91 LMERS--QTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 91 ~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.+.+. ++.+-+.+.|+|++.++...... +.+.+.+...+.....++.+|-.+ +.+-+.|+.+.+
T Consensus 104 ~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 104 ALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp HHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHH
Confidence 23332 46799999999999766654444 344444444443335777888777 467777777765
No 322
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.57 E-value=4.1e-06 Score=65.96 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=65.3
Q ss_pred ChhcccCCCCceeccC-CCCcceEEEEE-Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSD-KPGLTQTINFF-KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~-~~g~t~~~~~~-~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
++|+|+++ ....++. .+++|+..... .. +.++.+|||||+.+........+.+...+.+++... .+|++++|...
T Consensus 134 LINSILGe-kvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~-gpDVVLlV~RL 211 (763)
T TIGR00993 134 TINSIFGE-VKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKN-PPDIVLYVDRL 211 (763)
T ss_pred HHHHHhcc-ccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcC-CCCEEEEEEeC
Confidence 58999999 4555555 46666644432 22 667999999999776443322333333444454432 46888888754
Q ss_pred CCC-CCccHHHHHHHHHHh-----CCceEEEEeccCCCC
Q 031293 78 KWG-VKPRDHELISLMERS-----QTKYQVVLTKTDTVF 110 (162)
Q Consensus 78 ~~~-~~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~ 110 (162)
... ....+...++.+... ...+|||+|..|...
T Consensus 212 d~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 212 DMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 321 111333455555432 245899999999885
No 323
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.56 E-value=1.4e-06 Score=61.21 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+..+.++.|.|.|.. +--+..+ +|.+++|+.+..+ ++..-.-+++. .=++|+||+|
T Consensus 121 G~D~IiiETVGvGQs----------E~~I~~~------aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS----------EVDIADM------ADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp T-SEEEEEEESSSTH----------HHHHHTT------SSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred CCCEEEEeCCCCCcc----------HHHHHHh------cCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 457899999998764 2223332 4899999887543 22211122222 3488899999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
. ........+++..+.... ...+|++.+||.++.|+++|+++|.+...+
T Consensus 179 ~---~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 179 R---PGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp H---HHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4 344555556666555322 123699999999999999999999986554
No 324
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.53 E-value=9.2e-07 Score=60.89 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred hCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 95 SQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
...|.++++||+|+.+... ..+..+.+ .... ...+++++||++|.|++++++++.+.
T Consensus 147 ~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l----~~~~-~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 147 FKEADLIVINKADLAEAVGFDVEKMKADA----KKIN-PEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HhhCCEEEEEHHHccccchhhHHHHHHHH----HHhC-CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578899999999975321 22222232 2222 23689999999999999999999865
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.53 E-value=2.9e-06 Score=60.59 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.||.|-|.|.. +--+..+ +|+++++.-+..+ .+.+.++ ..-+.+-=++|+||+|..
T Consensus 143 G~DvIIVETVGvGQs----------ev~I~~~------aDt~~~v~~pg~G---D~~Q~iK-~GimEiaDi~vINKaD~~ 202 (323)
T COG1703 143 GYDVIIVETVGVGQS----------EVDIANM------ADTFLVVMIPGAG---DDLQGIK-AGIMEIADIIVINKADRK 202 (323)
T ss_pred CCCEEEEEecCCCcc----------hhHHhhh------cceEEEEecCCCC---cHHHHHH-hhhhhhhheeeEeccChh
Confidence 567999999998765 2223332 3888888766543 1222221 011133348999999953
Q ss_pred CcHHHHHHHHHHHHHHHh------cCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293 110 FPIDVARRAMQIEESLKA------NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 160 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~ 160 (162)
..+....+++..+.. .....+|++.+||..|+|+++|+++|.+..++.
T Consensus 203 ---~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 203 ---GAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred ---hHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 222222333332221 122346999999999999999999999887654
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.49 E-value=3.6e-08 Score=73.29 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred ChhcccCCCC----ceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~----~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|||+|++... .+.+|..||+|+....+.++..+.++||||+.... ...+.....-..++.....+..+.+.++
T Consensus 170 liN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~---~~~~~l~~~~l~~~~~~~~i~~~~~~l~ 246 (360)
T TIGR03597 170 LINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH---QMAHYLDKKDLKYITPKKEIKPKTYQLN 246 (360)
T ss_pred HHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh---HhhhhcCHHHHhhcCCCCccCceEEEeC
Confidence 6899988632 45799999999999988886678999999995431 0011111111113333445677888888
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES 124 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~ 124 (162)
....+.-.....++.+......+.+.++|.+.++....+...+.+++.
T Consensus 247 ~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~ 294 (360)
T TIGR03597 247 PNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKH 294 (360)
T ss_pred CCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhh
Confidence 765433333333334443456688888988887665555555555444
No 327
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=5e-08 Score=72.30 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=61.1
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++|||||-+. .-.++++++-+ |+++.|+|++.++..+....+......++|.++.+||+|..
T Consensus 101 g~rinlidtpghvdf----------~leverclrvl---dgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 101 GHRINLIDTPGHVDF----------RLEVERCLRVL---DGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL 167 (753)
T ss_pred cceEeeecCCCcceE----------EEEHHHHHHHh---cCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh
Confidence 778999999999332 11244454443 99999999999998888888888888899999999999987
Q ss_pred CcHHHHHHHHHHHHHHH
Q 031293 110 FPIDVARRAMQIEESLK 126 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~ 126 (162)
.. ..+...+.+++.++
T Consensus 168 ~a-nfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 168 AA-NFENAVDSIEEKLG 183 (753)
T ss_pred hh-hhhhHHHHHHHHhC
Confidence 33 34444555555554
No 328
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=63.76 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=69.0
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 112 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~ 112 (162)
..+.+.||+- .+..+....-...+|.++.|+|++.+.......+-++.. +.|.++|+||+|+++..
T Consensus 12 ~~i~~~~g~~------------~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~ 77 (322)
T COG1161 12 NKIQWFPGHM------------KKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKE 77 (322)
T ss_pred ccccCCCCch------------HHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHH
Confidence 3466778881 233333334445569999999999988777766666655 45569999999999877
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 113 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
...++.+.+ .... ....+.+|+..+.+...+..++.
T Consensus 78 ~~~~W~~~~----~~~~--~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 78 VTKKWKKYF----KKEE--GIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred HHHHHHHHH----HhcC--CCccEEEEeecccCccchHHHHH
Confidence 655444333 3332 24678888888888777774333
No 329
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=9.6e-07 Score=62.36 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=89.6
Q ss_pred ChhcccCCCCceecc--CCCCcceEEEEEEe-----CCceEEEcCCCCcccc----cCHHHHHHHHHHHHHHHhcC----
Q 031293 1 MLNALTRQWGVVRTS--DKPGLTQTINFFKL-----GTKLCLVDLPGYGFAY----AKEEVKDAWEELVKEYVSTR---- 65 (162)
Q Consensus 1 lin~L~~~~~~~~~~--~~~g~t~~~~~~~~-----~~~~~ivDtpG~~~~~----~~~~~~~~~~~~~~~~~~~~---- 65 (162)
|++.|++.+.....+ ..|++......|.+ .-+++++||.|+|+.- ......+.....+..|+...
T Consensus 58 LmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~ 137 (406)
T KOG3859|consen 58 LMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIR 137 (406)
T ss_pred HHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 345555553222222 24554444444544 2369999999999862 12223333333333333221
Q ss_pred --------cccceeEEEeec-CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeE
Q 031293 66 --------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVM 136 (162)
Q Consensus 66 --------~~~~~vi~vid~-~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 136 (162)
+.++++++.|.+ ..++...+.-.++.+.. .+.+|-++-|.|.++..+.......+...+..++. .|+
T Consensus 138 Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv---~IY 213 (406)
T KOG3859|consen 138 RSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAKADTISKEELKRFKIKIMSELVSNGV---QIY 213 (406)
T ss_pred HHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCc---eee
Confidence 345666666655 44555555555555553 56678888999999999998888888888876654 555
Q ss_pred EeecCCCCCHHHHHHHHHHhhhhhc
Q 031293 137 MVSSKSGAGIRSLRTVLSKIARFAK 161 (162)
Q Consensus 137 ~~Sa~~~~g~~~l~~~i~~~~~~~k 161 (162)
... ...+.+.+.-..+...++|+.
T Consensus 214 qfP-tDdetva~~N~~mn~~lPFAV 237 (406)
T KOG3859|consen 214 QFP-TDDETVAKANSEMNHSLPFAV 237 (406)
T ss_pred ecc-chHHHHHHHHHHhhcCCceeE
Confidence 543 223445555555555555543
No 330
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.44 E-value=5.6e-07 Score=59.36 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=68.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHH--hCCceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMER--SQTKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~--~~~~~ivv~nK~Dl 108 (162)
+.-+|||+|. +.+..+.+.|.++. ...++|....+..+ ....++...... ..+|.++|-||+|+
T Consensus 70 r~mlWdtagq----------eEfDaItkAyyrga---qa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDl 136 (246)
T KOG4252|consen 70 RSMLWDTAGQ----------EEFDAITKAYYRGA---QASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDL 136 (246)
T ss_pred HHHHHHhccc----------hhHHHHHHHHhccc---cceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchh
Confidence 3568899988 55577788887766 56666666544211 112223333322 25999999999999
Q ss_pred CCcHHHHH-HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVAR-RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
++.+.... ..+.+.+.+. ...+-+|++...++..++.++.+.+
T Consensus 137 veds~~~~~evE~lak~l~------~RlyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 137 VEDSQMDKGEVEGLAKKLH------KRLYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hHhhhcchHHHHHHHHHhh------hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 86554332 1122222222 3677899999999999999998754
No 331
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=61.89 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=60.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~ 111 (162)
..-.-|.||| +.+-++..-......|+++-|-||+-+++.....+.+.+. .+|.|+|+||+||.+.
T Consensus 23 ~~~~~wfpgH------------makalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 23 NMPRRWFPGH------------MAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADP 88 (335)
T ss_pred CCccccCchH------------HHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCc
Confidence 3567789999 2445666666667789999999999999888866666665 7789999999999987
Q ss_pred HHHHHHHHHHHHH
Q 031293 112 IDVARRAMQIEES 124 (162)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (162)
.+....++.++..
T Consensus 89 ~~~k~~iq~~~~~ 101 (335)
T KOG2485|consen 89 KEQKKIIQYLEWQ 101 (335)
T ss_pred hhhhHHHHHHHhh
Confidence 7766666555443
No 332
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.38 E-value=2.3e-06 Score=63.12 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=47.2
Q ss_pred CcccceeEEEeecCCCCCccHHHHHHHHH-Hh-CCceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293 65 RVSLKRVCLLIDTKWGVKPRDHELISLME-RS-QTKYQVVLTKTDTVFPIDVARRAMQIEES 124 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~~~~~~~~~~~l~-~~-~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~ 124 (162)
...+|+|+.|+||++|......+.-.++. .. ++..|+|+||+|+++.+.+++++.+++..
T Consensus 144 ve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~ 205 (435)
T KOG2484|consen 144 VEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRRE 205 (435)
T ss_pred HhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhh
Confidence 34569999999999998887777766553 33 38899999999999888887777666554
No 333
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.35 E-value=1.1e-06 Score=58.29 Aligned_cols=66 Identities=24% Similarity=0.468 Sum_probs=45.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-HHHHhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-~l~~~~~~~ivv~nK~ 106 (162)
.+.++||||++...... ...+.+|+ ..+|++++|.++.......+.+.+. ........+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~------~~~~~~~~---~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEH------TEITEEYL---PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTT------SHHHHHHH---STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhh------HHHHHHhh---ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 59999999996542211 25566666 3459999999999877766656554 4444456699999995
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.31 E-value=1.3e-06 Score=62.53 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=48.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CC-----------------ceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GT-----------------KLCLVDLPGYGFAYAKEEVKDAWEELVKE 60 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~-----------------~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 60 (162)
|||+|++. . ..++++|++|.+.+.. .+ +. ++.++|+||+....... ..+..+
T Consensus 14 Lfn~Lt~~-~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~------~glg~~ 85 (274)
T cd01900 14 LFNALTKA-G-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG------EGLGNK 85 (274)
T ss_pred HHHHHhCC-C-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh------hHHHHH
Confidence 68999999 3 4889999999876642 22 11 38999999984331110 223345
Q ss_pred HHhcCcccceeEEEeecC
Q 031293 61 YVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~ 78 (162)
++...+.+|++++|+|+.
T Consensus 86 fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 86 FLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHhCCEEEEEEeCc
Confidence 555666789999999975
No 335
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.30 E-value=4.5e-06 Score=57.14 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce--EEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY--QVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGA 144 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~--ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~ 144 (162)
+.++.|+|+.+..... .. ....+.+ ++++||+|+.+. .+... +.+.+..... ..+++++||++|+
T Consensus 114 ~~~i~vvD~~~~~~~~-----~~-~~~qi~~ad~~~~~k~d~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 114 DLTIFVIDVAAGDKIP-----RK-GGPGITRSDLLVINKIDLAPMVGADLGV----MERDAKKMRG-EKPFIFTNLKTKE 182 (199)
T ss_pred CcEEEEEEcchhhhhh-----hh-hHhHhhhccEEEEEhhhccccccccHHH----HHHHHHHhCC-CCCEEEEECCCCC
Confidence 6788999987543211 11 1113344 899999999742 22322 2233333222 3699999999999
Q ss_pred CHHHHHHHHHHhh
Q 031293 145 GIRSLRTVLSKIA 157 (162)
Q Consensus 145 g~~~l~~~i~~~~ 157 (162)
|+++++++|.+..
T Consensus 183 gi~el~~~i~~~~ 195 (199)
T TIGR00101 183 GLDTVIDWIEHYA 195 (199)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998754
No 336
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=2e-05 Score=56.61 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=56.0
Q ss_pred cceeEEEeecCCC-CCccHHH-HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 031293 68 LKRVCLLIDTKWG-VKPRDHE-LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 145 (162)
Q Consensus 68 ~~~vi~vid~~~~-~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g 145 (162)
.|-+++|+.+-.| ++....+ ++-.....++..++++||+|+.++.+... +.........+ .+++.+|++++.|
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g---y~v~~~s~~~~~~ 154 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG---YPVLFVSAKNGDG 154 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHHHHHHhCC---eeEEEecCcCccc
Confidence 3555666565443 4333322 44555667888889999999997665543 23333333333 5999999999999
Q ss_pred HHHHHHHHHHh
Q 031293 146 IRSLRTVLSKI 156 (162)
Q Consensus 146 ~~~l~~~i~~~ 156 (162)
+++|.+++...
T Consensus 155 ~~~l~~~l~~~ 165 (301)
T COG1162 155 LEELAELLAGK 165 (301)
T ss_pred HHHHHHHhcCC
Confidence 99999988754
No 337
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.20 E-value=3.8e-06 Score=62.21 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=49.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 60 (162)
|||+|++. . +.++++|++|++.+. .... .++.++|+||+..... . . +.+..+
T Consensus 18 LfnaLt~~-~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~-~-g----~glg~~ 89 (364)
T PRK09601 18 LFNALTKA-G-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS-K-G----EGLGNQ 89 (364)
T ss_pred HHHHHhCC-C-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC-h-H----HHHHHH
Confidence 68999999 3 789999999987663 2221 1489999999843211 1 0 234455
Q ss_pred HHhcCcccceeEEEeecC
Q 031293 61 YVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~ 78 (162)
++...+.+|++++|+|+.
T Consensus 90 fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 90 FLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHhCCEEEEEEeCC
Confidence 666667789999999985
No 338
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.20 E-value=8.2e-07 Score=55.46 Aligned_cols=62 Identities=16% Similarity=0.071 Sum_probs=36.1
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hCCceEEEEecc
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTKYQVVLTKT 106 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~~~~ivv~nK~ 106 (162)
+.++|++|.... ....... ...+|++++|.|..++.+-.. .+++.++.. .++|+++|.||.
T Consensus 52 ~~~~d~~g~~~~----------~~~~~~~---~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~ 118 (119)
T PF08477_consen 52 LQFWDFGGQEEF----------YSQHQFF---LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKS 118 (119)
T ss_dssp EEEEEESSSHCH----------HCTSHHH---HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-T
T ss_pred EEEEecCcccee----------cccccch---hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEecc
Confidence 789999998221 1111111 233599999999886432222 122233332 249999999999
Q ss_pred C
Q 031293 107 D 107 (162)
Q Consensus 107 D 107 (162)
|
T Consensus 119 D 119 (119)
T PF08477_consen 119 D 119 (119)
T ss_dssp C
T ss_pred C
Confidence 8
No 339
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=57.57 Aligned_cols=135 Identities=15% Similarity=0.133 Sum_probs=79.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEE----EEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~----~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|||+||+.. .. ..+.-.-|.|.. ....+..+.+.||-|+-.. .+......|+ ..+..-..+|+++.|.|
T Consensus 194 LikaLT~Aa-l~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP~~LvaAF~----ATLeeVaeadlllHvvD 266 (410)
T KOG0410|consen 194 LIKALTKAA-LY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LPIQLVAAFQ----ATLEEVAEADLLLHVVD 266 (410)
T ss_pred HHHHHHhhh-cC-ccchhheeccchhhhccCCCCcEEEEeechhhhhh-CcHHHHHHHH----HHHHHHhhcceEEEEee
Confidence 567777552 21 222323333332 2333666899999998211 1111222333 33344455699999999
Q ss_pred cCCCCCccHHH-HHHHHHHhCCc-------eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 77 TKWGVKPRDHE-LISLMERSQTK-------YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 77 ~~~~~~~~~~~-~~~~l~~~~~~-------~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
.+.|.-....+ .+.-|+..++| ++=|-||+|..+.. . ... . -..+++||++|.|+++
T Consensus 267 iShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-----------e~E-~--n~~v~isaltgdgl~e 331 (410)
T KOG0410|consen 267 ISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-----------EEE-K--NLDVGISALTGDGLEE 331 (410)
T ss_pred cCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-----------ccc-c--CCccccccccCccHHH
Confidence 98875443333 55666666654 67788888864211 1 100 0 1368899999999999
Q ss_pred HHHHHHHhh
Q 031293 149 LRTVLSKIA 157 (162)
Q Consensus 149 l~~~i~~~~ 157 (162)
+...+....
T Consensus 332 l~~a~~~kv 340 (410)
T KOG0410|consen 332 LLKAEETKV 340 (410)
T ss_pred HHHHHHHHh
Confidence 999987644
No 340
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.09 E-value=4.3e-05 Score=56.04 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHHHHHHHH-------
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHELISLMER------- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~~~~l~~------- 94 (162)
+..+.++|++|.. ..+..| ..+. .+++++++|+|.++.- ...-.+.+..+..
T Consensus 160 ~~~~~~~DvgGq~------~~R~kW----~~~f---~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 160 NLKFRMFDVGGQR------SERKKW----IHCF---EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ceEEEEECCCCCc------ccchhH----HHHh---CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 4568999999982 122223 3333 3569999999986520 1111222222221
Q ss_pred hCCceEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHH
Q 031293 95 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+.|+++++||.|+..+ .......+.+.+.+.... .+..-+..++|..-.++..++..+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 25899999999996421 123444455554443221 233455667888888888888888
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 307 ~~~i~ 311 (317)
T cd00066 307 KDIIL 311 (317)
T ss_pred HHHHH
Confidence 76553
No 341
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.07 E-value=2.9e-06 Score=62.24 Aligned_cols=42 Identities=36% Similarity=0.593 Sum_probs=38.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 43 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~ 43 (162)
|||+|.++ ..+.+|+.||+|+......++..+.++||||+-.
T Consensus 148 lIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~ 189 (322)
T COG1161 148 LINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189 (322)
T ss_pred HHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCC
Confidence 68999999 5799999999999999999988899999999833
No 342
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.07 E-value=8.8e-05 Score=54.98 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHHHHHHHH-------
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHELISLMER------- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~~~~l~~------- 94 (162)
+..+.++|.+|. ...+..| ..++ .++++++||+|.++-- ...-.+.+..+..
T Consensus 183 ~~~~~~~DvgGq------r~~R~kW----~~~f---~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 183 KLFFRMFDVGGQ------RSERKKW----IHCF---DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CeEEEEEecCCc------hhhhhhH----HHHh---CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 445899999998 2222333 3333 3459999999987520 1111222222221
Q ss_pred hCCceEEEEeccCCCCcH-----------------HHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHH
Q 031293 95 SQTKYQVVLTKTDTVFPI-----------------DVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+.|+++++||.|+..+. ......+.+.+.+.... .+..-++.++|.+-.++..++..+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 258999999999975211 12344444544433221 123445667888888888888877
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 330 ~~~I 333 (342)
T smart00275 330 KDII 333 (342)
T ss_pred HHHH
Confidence 6644
No 343
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.06 E-value=2.9e-05 Score=59.13 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=53.8
Q ss_pred HHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCC
Q 031293 57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 134 (162)
Q Consensus 57 ~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (162)
++++..+-...+|+|+.|+|++.+.--....+.++..+. ++..++++||+||+.+..... |.+.+...+ .+
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~a----Wa~YF~~~n---i~ 236 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVA----WAEYFRQNN---IP 236 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHH----HHHHHHhcC---ce
Confidence 344444555677999999999998644444444555443 355788889999997766544 444444443 59
Q ss_pred eEEeecCC
Q 031293 135 VMMVSSKS 142 (162)
Q Consensus 135 i~~~Sa~~ 142 (162)
+++.||..
T Consensus 237 ~vf~SA~~ 244 (562)
T KOG1424|consen 237 VVFFSALA 244 (562)
T ss_pred EEEEeccc
Confidence 99999977
No 344
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.05 E-value=1.3e-05 Score=57.58 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=39.4
Q ss_pred CceEEEEeccCCCCc--HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 97 TKYQVVLTKTDTVFP--IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
..-++|+||+|+++. .+.+...+.+++ .. ...+++++||++|+|++++.+||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~----ln-p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACARE----VN-PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHh----hC-CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999852 234433333332 22 23699999999999999999999874
No 345
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.01 E-value=2.2e-05 Score=53.22 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=63.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.+|||+|+ +.+.. ++.. ....+|++++..+-..+ +......++-.+... +.|+++|.+|.|
T Consensus 54 ~L~LwDTAGq----------edYDr-lRpl--sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~D 120 (198)
T KOG0393|consen 54 ELGLWDTAGQ----------EDYDR-LRPL--SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKAD 120 (198)
T ss_pred EEeeeecCCC----------ccccc-cccc--CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHH
Confidence 3789999999 22222 1111 33455777665443322 222223344444444 589999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+.....+.+ +...+.....+. ..++.+||++..|+.++++.-...
T Consensus 121 Lr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga--~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 121 LRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA--VKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred hhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc--ceeeeehhhhhCCcHHHHHHHHHH
Confidence 97433111000 122222333333 689999999999999988876553
No 346
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.00011 Score=54.20 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=45.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--------------C-------CceEEEcCCCCccc-ccCHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------G-------TKLCLVDLPGYGFA-YAKEEVKDAWEELV 58 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------~-------~~~~ivDtpG~~~~-~~~~~~~~~~~~~~ 58 (162)
|||+||.. . +..+++|.+|-+++.-.. + ..+.++|.+|.-.+ +.+ +.+-
T Consensus 18 lFnAlT~~-~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~G-------eGLG 88 (372)
T COG0012 18 LFNALTKA-G-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKG-------EGLG 88 (372)
T ss_pred HHHHHHcC-C-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccC-------CCcc
Confidence 68999999 4 778999999987775211 1 14889999998222 112 2223
Q ss_pred HHHHhcCcccceeEEEeecC
Q 031293 59 KEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 59 ~~~~~~~~~~~~vi~vid~~ 78 (162)
.+++...+.+|.++.|+++.
T Consensus 89 NkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 89 NKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred hHHHHhhhhcCeEEEEEEec
Confidence 34444455567777777765
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.89 E-value=1.3e-05 Score=57.97 Aligned_cols=43 Identities=33% Similarity=0.671 Sum_probs=37.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
|||+|++. ..+.+++.||+|+.......+..+.++||||.-..
T Consensus 137 liN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 137 LINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWP 179 (287)
T ss_pred HHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCC
Confidence 58999998 56789999999999998888888999999998443
No 348
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00015 Score=47.51 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--CCCccHHHHHHHH--H-HhCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--GVKPRDHELISLM--E-RSQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--~~~~~~~~~~~~l--~-~~~~~~ivv~n 104 (162)
+-+++-.|..||-. - ....++|+.. ++.+++++|+-+ .+.+...++-..+ . -.+.|+++..|
T Consensus 63 ~m~ftt~DLGGH~q------A----rr~wkdyf~~---v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgn 129 (193)
T KOG0077|consen 63 GMTFTTFDLGGHLQ------A----RRVWKDYFPQ---VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGN 129 (193)
T ss_pred CceEEEEccccHHH------H----HHHHHHHHhh---hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecc
Confidence 44699999999921 1 3345555443 389999999854 2222222221111 1 23799999999
Q ss_pred ccCCCCcHHHH--HHHHHHHHHHHh--------cCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 105 KTDTVFPIDVA--RRAMQIEESLKA--------NNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 105 K~Dl~~~~~~~--~~~~~~~~~~~~--------~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+|.......+ .....+.+.... .+.+...++.||...+.|.-+-+.|+..
T Consensus 130 KId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 130 KIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred cccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 99987433111 111122222221 1233456888999888887777766654
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.79 E-value=2e-05 Score=56.70 Aligned_cols=42 Identities=31% Similarity=0.604 Sum_probs=36.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 43 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~ 43 (162)
|||+|++. ..+.++..||+|+....+.++.++.++||||.-.
T Consensus 134 lin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~ 175 (276)
T TIGR03596 134 LINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILW 175 (276)
T ss_pred HHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCccc
Confidence 58999998 5788999999999998888877899999999833
No 350
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.78 E-value=0.00066 Score=44.14 Aligned_cols=108 Identities=14% Similarity=0.102 Sum_probs=66.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCc--eEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTK--YQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~--~ivv~nK~Dl 108 (162)
.|.+||..|. +.+....--+...+-.++|+.|-..+.+... .++++..+..+.. .|+|.+|.|+
T Consensus 70 sfSIwdlgG~-------------~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~ 136 (205)
T KOG1673|consen 70 SFSIWDLGGQ-------------REFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDL 136 (205)
T ss_pred EEEEEecCCc-------------HhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHh
Confidence 4889999999 4444333223344578889998655432222 3355555544422 4677899997
Q ss_pred C---CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 109 V---FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 109 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
. +++...++....+...+.-+ .+.+++|+-...++.+++..+-.
T Consensus 137 fi~lp~e~Q~~I~~qar~YAk~mn---AsL~F~Sts~sINv~KIFK~vlA 183 (205)
T KOG1673|consen 137 FIDLPPELQETISRQARKYAKVMN---ASLFFCSTSHSINVQKIFKIVLA 183 (205)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhC---CcEEEeeccccccHHHHHHHHHH
Confidence 5 33333333334444444332 58999999999999999887643
No 351
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.76 E-value=0.0003 Score=37.82 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=23.3
Q ss_pred cceeEEEeecCCCC--Cc-cHHHHHHHHHHh--CCceEEEEeccC
Q 031293 68 LKRVCLLIDTKWGV--KP-RDHELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 68 ~~~vi~vid~~~~~--~~-~~~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.++++|++|.++.. +- ....+++.++.. ++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 48999999988643 22 223345666654 799999999998
No 352
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.71 E-value=0.0001 Score=49.67 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=37.8
Q ss_pred EEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 100 QVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 100 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
++|+||.|+.+.-.. -++...+....-.+ ..+++++|+++|+|++++++|+....
T Consensus 146 llVInK~DLa~~v~~--dlevm~~da~~~np-~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGA--DLEVMARDAKEVNP-EAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCc--cHHHHHHHHHHhCC-CCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 789999999753332 11222233332222 26999999999999999999998654
No 353
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.71 E-value=0.00079 Score=50.27 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=57.2
Q ss_pred HHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCC
Q 031293 57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQP 134 (162)
Q Consensus 57 ~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (162)
++.+...-...+|+++-|+||+++....-..+-.+|+.. ++-+|.|+||+||+.--....+ ++-+...+. .-
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~W---v~~lSkeyP---Ti 276 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKW---VRHLSKEYP---TI 276 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHH---HHHHhhhCc---ce
Confidence 334444444567999999999998877666666777653 3558999999999854333332 222222221 12
Q ss_pred eEEeecCCCCCHHHHHHHHHHhh
Q 031293 135 VMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 135 i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
-|..|-.+..|--.|.+.+.+..
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~ 299 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFA 299 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHH
Confidence 23344455566556666665543
No 354
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00046 Score=51.08 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=49.2
Q ss_pred ceEEEcCCCCcccccC-HHHHHHHHHHHHHHHhcCcccceeEEEeecCC-CCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
.+++|||||+=....+ .+..-.+...+ ++.. ..+|.++++.|+.. .++....+++..++...-.+=||+||+|.+
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~-~WFa--eR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVL-EWFA--ERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHH-HHHH--HhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEecccccc
Confidence 6999999998322111 11100111111 1111 24599999999865 455556667777776666788999999999
Q ss_pred CcHH
Q 031293 110 FPID 113 (162)
Q Consensus 110 ~~~~ 113 (162)
+..+
T Consensus 225 dtqq 228 (532)
T KOG1954|consen 225 DTQQ 228 (532)
T ss_pred CHHH
Confidence 6554
No 355
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.64 E-value=0.0011 Score=43.04 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=68.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH-HHHHHh----CCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI-SLMERS----QTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~-~~l~~~----~~~~ivv~nK 105 (162)
+.+.+.||.|.-... ..+-+.|+. .+|..++|.++.++-+-+..+++ .++... .+|++++.||
T Consensus 60 E~l~lyDTaGlq~~~---------~eLprhy~q---~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~ 127 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ---------QELPRHYFQ---FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK 127 (198)
T ss_pred heEEEeecccccCch---------hhhhHhHhc---cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence 358999999982220 223344543 34899999888765433344443 344433 4789999999
Q ss_pred cCCCCcHHHHHHH-HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 106 TDTVFPIDVARRA-MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 106 ~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
.|+..+.+..... +.|.+. ..+..+.+++.....+-+.+..+...
T Consensus 128 rdr~~p~~vd~d~A~~Wa~r------Ekvkl~eVta~dR~sL~epf~~l~~r 173 (198)
T KOG3883|consen 128 RDRAEPREVDMDVAQIWAKR------EKVKLWEVTAMDRPSLYEPFTYLASR 173 (198)
T ss_pred hhcccchhcCHHHHHHHHhh------hheeEEEEEeccchhhhhHHHHHHHh
Confidence 9997555433222 122111 12588899999999999888888754
No 356
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.62 E-value=0.002 Score=47.62 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--------CCccHHHHHHHHHH-------
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--------VKPRDHELISLMER------- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--------~~~~~~~~~~~l~~------- 94 (162)
+.++.++|.+|+ .+. .++++.=...++.++|+++-++- .+....+.++....
T Consensus 194 ~~~f~~~DvGGQ------Rse-------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 194 GLKFRMFDVGGQ------RSE-------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCceEEEeCCCc------HHH-------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 567999999998 333 33333334556999999986541 12222222222222
Q ss_pred hCCceEEEEeccCCCCcHH-----------------HHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 95 SQTKYQVVLTKTDTVFPID-----------------VARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
.+.++|+++||.|+..+.- .+.....++..+.... .+..-+..++|.+-.+++.+++++.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 1467999999999863221 1333344444333221 1223344567888888888888887
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+.+.
T Consensus 341 d~Ii 344 (354)
T KOG0082|consen 341 DTII 344 (354)
T ss_pred HHHH
Confidence 7553
No 357
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00017 Score=55.24 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=47.8
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++|.||| -++-.+..++++..|+.++|+|+-+++-.++...+...-...+..++++||+|..
T Consensus 100 iNLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGH-------------VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCc-------------ccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 679999999 4444555566677799999999999988888777744333355567778999953
No 358
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.60 E-value=0.00047 Score=48.51 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=37.6
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
++.+.|.||+|.++-+++.. .. +.++-+.+||...-|++.+++.|=+.+..
T Consensus 239 ~~ClYvYnKID~vs~eevdr-------lA-----r~PnsvViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 239 IKCLYVYNKIDQVSIEEVDR-------LA-----RQPNSVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred EEEEEEeeccceecHHHHHH-------Hh-----cCCCcEEEEeccccCHHHHHHHHHHHhce
Confidence 46889999999887655432 11 22467889999999999999988776653
No 359
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.59 E-value=0.0018 Score=43.39 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
...+.++||||.- .......+ ..+|.+++++.+...-.......++.++..+.|+.+|+||+|..
T Consensus 92 ~~d~viiDtpp~~------------~~~~~~~l---~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGI------------GCPVIASL---TGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCC------------cHHHHHHH---HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4469999998541 11222222 34599999998875432333445667777788899999999974
No 360
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.53 E-value=0.00049 Score=47.10 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=69.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHH---HHHHHhCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELI---SLMERSQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~---~~l~~~~~~~ivv~nK 105 (162)
..+.+.|+||+-+.....+. +.++++..-+...+ -++++++|+.--. +..-.-++ ..+-...+|.|=|++|
T Consensus 98 ddylifDcPGQIELytH~pV---m~~iv~hl~~~~F~-~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPV---MPQIVEHLKQWNFN-VCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChh---HHHHHHHHhcccCc-eeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhH
Confidence 45999999999666443322 12333333332223 5677777874311 11111122 2333458999999999
Q ss_pred cCCCCcHH---HHH------------------------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 106 TDTVFPID---VAR------------------------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 106 ~Dl~~~~~---~~~------------------------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+|+++... .+. .-+.+...+..++ -+.++|..+.+.+.++.++..|...+|
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~--Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYS--MVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhcccc--ceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 99985421 100 0001111112222 267888888888899999999988877
Q ss_pred h
Q 031293 159 F 159 (162)
Q Consensus 159 ~ 159 (162)
|
T Consensus 252 y 252 (273)
T KOG1534|consen 252 Y 252 (273)
T ss_pred h
Confidence 5
No 361
>PRK13796 GTPase YqeH; Provisional
Probab=97.52 E-value=7.5e-05 Score=55.83 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=33.7
Q ss_pred ChhcccCCC----CceeccCCCCcceEEEEEEeCCceEEEcCCCC
Q 031293 1 MLNALTRQW----GVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 41 (162)
Q Consensus 1 lin~L~~~~----~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~ 41 (162)
|||+|.+.. ....+|..||||++...+.++....++||||+
T Consensus 176 LiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi 220 (365)
T PRK13796 176 LINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGI 220 (365)
T ss_pred HHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCc
Confidence 689997542 34568999999999998888766899999998
No 362
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00063 Score=53.80 Aligned_cols=68 Identities=10% Similarity=0.233 Sum_probs=47.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF 110 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~ 110 (162)
.+.++|.||.+..... ...+.... ..+|++++|.++...++....+++....+. +| +.|+.||+|...
T Consensus 207 DivliDsPGld~~se~-------tswid~~c---ldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSEL-------TSWIDSFC---LDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhh-------hHHHHHHh---hcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhhhc
Confidence 5899999999665321 11222222 235999999999988877777777666554 56 677778999874
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.0029 Score=45.52 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC-----cccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR-----VSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
+..+.++||||..... ... ...++++.... ..++.+++|+|+..+ ..+........+.--+.-+++|
T Consensus 154 ~~D~ViIDT~G~~~~d--~~~----~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNK--VNL----MDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcch--HHH----HHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCCCCEEEEE
Confidence 3468999999984321 111 11122222111 236889999999743 2233333332221224688889
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|.|....... .+... ...+ .|+.+++ +|++++++.
T Consensus 226 KlDe~~~~G~--~l~~~----~~~~---~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGI--ILSIA----YELK---LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccH--HHHHH----HHHC---cCEEEEe--CCCChHhCc
Confidence 9998654321 11111 1122 4888888 777777654
No 364
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0002 Score=47.95 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=63.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--CccHHHHHHHHHHh-CCceEEEEeccC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--KPRDHELISLMERS-QTKYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--~~~~~~~~~~l~~~-~~~~ivv~nK~D 107 (162)
-+|..+||.|.. .+...-..|.-.. .|.+++.|-...+ .....++-+..+.. ++|+++..||.|
T Consensus 59 irf~~wdtagqE----------k~gglrdgyyI~~---qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvD 125 (216)
T KOG0096|consen 59 IRFNVWDTAGQE----------KKGGLRDGYYIQG---QCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVD 125 (216)
T ss_pred EEEEeeecccce----------eecccccccEEec---ceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeecccee
Confidence 358899999981 1122222222222 4667666654433 33333333444332 589999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
...+....+ .+..+..+....+.+||++..+.+.-+-|+.+.+
T Consensus 126 i~~r~~k~k-------~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 126 IKARKVKAK-------PVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ccccccccc-------cceeeecccceeEEeecccccccccchHHHhhhh
Confidence 754331111 1122223446899999999999999999887644
No 365
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.34 E-value=0.0041 Score=43.32 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=57.3
Q ss_pred CCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC-----cccceeEEEeecCCCCCccHHH
Q 031293 17 KPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR-----VSLKRVCLLIDTKWGVKPRDHE 87 (162)
Q Consensus 17 ~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~vid~~~~~~~~~~~ 87 (162)
.+|-|.++..-.. +-.+.++|+.|+ +.++++|+... ++.+.+++|.|++..-...|..
T Consensus 35 rlg~tidveHsh~RflGnl~LnlwDcGgq-------------e~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~ 101 (295)
T KOG3886|consen 35 RLGATIDVEHSHVRFLGNLVLNLWDCGGQ-------------EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH 101 (295)
T ss_pred ccCCcceeeehhhhhhhhheeehhccCCc-------------HHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH
Confidence 4666666654322 345779999999 77788887743 4678999999987654455555
Q ss_pred HHHH-HHHh--C---CceEEEEeccCCCCcHHHH
Q 031293 88 LISL-MERS--Q---TKYQVVLTKTDTVFPIDVA 115 (162)
Q Consensus 88 ~~~~-l~~~--~---~~~ivv~nK~Dl~~~~~~~ 115 (162)
+.+. |... + ..+.+.+.|+|++.....+
T Consensus 102 ~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 102 YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE 135 (295)
T ss_pred HHHHHHHHHHhcCCcceEEEEEeechhcccchHH
Confidence 4432 2211 2 4488899999999655543
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.34 E-value=0.0038 Score=45.94 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=53.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc--CcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+..+.++||||..... ...-+....+ .+.+.. ....+.+++|+|+..+. .+........+.--+--+++||.|
T Consensus 196 ~~D~ViIDTaGr~~~~--~~l~~eL~~~-~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 196 GIDVLIIDTAGRLHNK--TNLMEELKKI-KRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred CCCEEEEeCCCCCcCC--HHHHHHHHHH-HHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECCC
Confidence 3469999999973321 1111111111 111111 12357789999998642 222222222211124578889999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
...... ..+.. +...+ .|+.+++ +|+++++|.
T Consensus 271 ~t~~~G--~~l~~----~~~~~---~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 271 GTAKGG--VVFAI----ADELG---IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCcc--HHHHH----HHHHC---CCEEEEe--CCCChhhCc
Confidence 764432 11212 22222 4999998 777777654
No 367
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.34 E-value=0.0038 Score=47.62 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=42.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.++||||.... .+..-..+..+.. ...++.+++|+|+..+ .......+.+++.--+--+++||.|...
T Consensus 183 ~DvViIDTaGr~~~------d~~lm~El~~i~~-~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ------EDSLFEEMLQVAE-AIQPDNIIFVMDGSIG--QAAEAQAKAFKDSVDVGSVIITKLDGHA 253 (429)
T ss_pred CCEEEEECCCCCcc------hHHHHHHHHHHhh-hcCCcEEEEEeccccC--hhHHHHHHHHHhccCCcEEEEECccCCC
Confidence 46899999996221 1111222333322 2345889999999755 2233444444433335678899999864
Q ss_pred cH
Q 031293 111 PI 112 (162)
Q Consensus 111 ~~ 112 (162)
..
T Consensus 254 rg 255 (429)
T TIGR01425 254 KG 255 (429)
T ss_pred Cc
Confidence 43
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=97.33 E-value=0.004 Score=46.11 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=55.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||..... . ..+ ..++...+. ...+.+++|+|+..+ ....+........--.--+++||.|..
T Consensus 222 ~~DvVLIDTaGr~~~~--~---~lm-~eL~~i~~~-~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTD--A---NLM-DELKKIVRV-TKPDLVIFVGDALAG--NDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCc--H---HHH-HHHHHHHHh-hCCceEEEeeccccc--hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 3459999999973221 0 111 112333222 235888999999654 223333333332112357778999986
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
..... .+... ...+ .|+.+++ +|++++++..
T Consensus 293 ~~~G~--~ls~~----~~~~---~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 293 AKGGA--ALSIA----YVIG---KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCccH--HHHHH----HHHC---cCEEEEe--CCCChhhccc
Confidence 44321 11111 1122 4888887 7888877643
No 369
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.30 E-value=0.0002 Score=54.79 Aligned_cols=43 Identities=35% Similarity=0.562 Sum_probs=38.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
+||+|.|+ ....||.+||.|+....+-+...+.+-||||.-..
T Consensus 330 TINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 330 TINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFP 372 (562)
T ss_pred HHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCcccc
Confidence 58999999 56779999999999999888888999999998443
No 370
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.26 E-value=0.00049 Score=47.83 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=42.8
Q ss_pred CceEEEcC-CCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-CceEEEEeccCC
Q 031293 31 TKLCLVDL-PGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TKYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDt-pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~~~ivv~nK~Dl 108 (162)
+.+.++|| +|. +.+-+... +++|.++.|+|++..--.....+-+...+.+ .++.+|+||.|-
T Consensus 134 ~e~VivDtEAGi-------------EHfgRg~~---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGI-------------EHFGRGTI---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccch-------------hhhccccc---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 35889999 688 44444443 3459999999987543333344445555667 789999999985
No 371
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.18 E-value=0.00081 Score=47.52 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
+|.+.++||+|-++-++.. + -.....-+++||..+.+++++++.+-+-+.+
T Consensus 232 Vp~iyvLNkIdsISiEELd-----i-------i~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 232 VPCIYVLNKIDSISIEELD-----I-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred eeeeeeecccceeeeeccc-----e-------eeeccceeecccccccchHHHHHHHhhcchh
Confidence 5789999999987544321 0 1133578899999999999999988765543
No 372
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.15 E-value=0.0011 Score=50.00 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC--------CCCccHHHHHHHHHH-------
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW--------GVKPRDHELISLMER------- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~--------~~~~~~~~~~~~l~~------- 94 (162)
+..+.++|..|+ ....++++.-..+++.|+|+++-++ +-.....+-+.....
T Consensus 235 ~~~~~~~DvGGq-------------r~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 235 SRKFRLIDVGGQ-------------RSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp TEEEEEEEETSS-------------GGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ccccceecCCCC-------------chhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 446999999999 2223344444456799999998532 112223333333322
Q ss_pred hCCceEEEEeccCCCCc--------------------HHHHHHHHHHHHHHHhcCC-----CCCCeEEeecCCCCCHHHH
Q 031293 95 SQTKYQVVLTKTDTVFP--------------------IDVARRAMQIEESLKANNS-----LVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~--------------------~~~~~~~~~~~~~~~~~~~-----~~~~i~~~Sa~~~~g~~~l 149 (162)
.+.|+++++||.|+..+ .......+.+.+.+..... +..-+..++|.+...+..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 15789999999997411 1234444555544432211 2234557788887778877
Q ss_pred HHHHHHh
Q 031293 150 RTVLSKI 156 (162)
Q Consensus 150 ~~~i~~~ 156 (162)
+..+.+.
T Consensus 382 ~~~v~~~ 388 (389)
T PF00503_consen 382 FNAVKDI 388 (389)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 7777654
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00091 Score=49.72 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=32.7
Q ss_pred ChhcccCCCCceeccCCCC-------cceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
|||+|.+. ...+++..++ ||+...++.+.....++||||+...
T Consensus 221 LiN~Ll~~-~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~ 270 (347)
T PRK12288 221 LINALLPE-AEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREF 270 (347)
T ss_pred HHHHhccc-cceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcc
Confidence 68999988 4556666554 6888888888555679999999665
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=97.02 E-value=0.00055 Score=50.92 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=35.0
Q ss_pred ChhcccCCCCceeccCCCC-------cceEEEEEEeCCceEEEcCCCCcccc
Q 031293 1 MLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGFAY 45 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~ivDtpG~~~~~ 45 (162)
|||+|.+. ....++..+| ||+....+.+.....++||||+....
T Consensus 188 LIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~ 238 (352)
T PRK12289 188 LINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPD 238 (352)
T ss_pred HHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCccccc
Confidence 68999988 4677788888 89999888885446899999996543
No 375
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.014 Score=45.85 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=62.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
+++++..+|.- +..++.-...+|+|+++||+..++.-.+.+++..+...++| ++.|++..|+.
T Consensus 113 RRiTflEcp~D----------------l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 113 RRITFLECPSD----------------LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred eEEEEEeChHH----------------HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 35778888832 22333333456999999999999988889999999988998 78999999998
Q ss_pred C-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 110 F-PIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 110 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
. .+........+.-.+=..-..-...|.+|.+.
T Consensus 177 k~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 177 KNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 4 33344333332211100001124778887655
No 376
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.74 E-value=0.0036 Score=42.07 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=63.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hC--CceEEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQ--TKYQVVL 103 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~--~~~ivv~ 103 (162)
++.++|..|+ +++..+..=|.+ .+.+.+.|+|-+...+-.. ..+.+.+.. .+ +|++...
T Consensus 76 RlqLwdIagQ----------erfg~mtrVyyk---ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vlla 142 (229)
T KOG4423|consen 76 RLQLWDIAGQ----------ERFGNMTRVYYK---EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLA 142 (229)
T ss_pred HHHHhcchhh----------hhhcceEEEEec---CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheecc
Confidence 4678888888 222222222333 3466777777554332211 122233321 13 5689999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
||+|.-.. ...+.-..+.++..+++. ..-+.+|++.+.++++..+.+.+.
T Consensus 143 nkCd~e~~-a~~~~~~~~d~f~kengf--~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 143 NKCDQEKS-AKNEATRQFDNFKKENGF--EGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred chhccChH-hhhhhHHHHHHHHhccCc--cceeeeccccccChhHHHHHHHHH
Confidence 99997532 222223445555565543 678899999999999988887764
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.70 E-value=0.0017 Score=46.00 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=29.2
Q ss_pred ChhcccCCCCceeccCC-------CCcceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVVRTSDK-------PGLTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~-------~g~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
|+|+|.+.. ..+++.. ++||+....+.++ ...++||||+...
T Consensus 136 LiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~~liDtPG~~~~ 184 (245)
T TIGR00157 136 LINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHFH-GGLIADTPGFNEF 184 (245)
T ss_pred HHHHHhhhh-hccccceeccCCCCCCcCCceEEEEcC-CcEEEeCCCcccc
Confidence 689998873 3333332 3488888888774 4689999999554
No 378
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.67 E-value=0.03 Score=43.97 Aligned_cols=94 Identities=26% Similarity=0.304 Sum_probs=52.2
Q ss_pred cCCCCcceEEEEEEe---C---CceEEEcCCCCcccc---cCHHHHHHHHHHHHHHHhcCcccceeEEE-eecCCCCC-c
Q 031293 15 SDKPGLTQTINFFKL---G---TKLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLL-IDTKWGVK-P 83 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~---~~~~ivDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vi~v-id~~~~~~-~ 83 (162)
+-..|.|.......+ | .+.++||.||.-... ...+-.+....+.+.|+..- +.+++. -|++-... .
T Consensus 390 sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NP---NAIILCIQDGSVDAERS 466 (980)
T KOG0447|consen 390 NVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNP---NAIILCIQDGSVDAERS 466 (980)
T ss_pred cccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCC---CeEEEEeccCCcchhhh
Confidence 445566664443322 2 258999999974331 22223344455666665443 444444 45443211 1
Q ss_pred cHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293 84 RDHELISLMERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 84 ~~~~~~~~l~~~~~~~ivv~nK~Dl~~~ 111 (162)
.-..+...++..+.+.|+|++|.|+..+
T Consensus 467 nVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 467 IVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 1123344556678889999999998743
No 379
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.62 E-value=0.0042 Score=48.50 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=49.2
Q ss_pred cceeEEEeecCCCC--CccHHHHHHHHHHh-----CCceEEEEeccCCCCcHHH--HHHHHHHHHHHHhcCCCCCCeEEe
Q 031293 68 LKRVCLLIDTKWGV--KPRDHELISLMERS-----QTKYQVVLTKTDTVFPIDV--ARRAMQIEESLKANNSLVQPVMMV 138 (162)
Q Consensus 68 ~~~vi~vid~~~~~--~~~~~~~~~~l~~~-----~~~~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~ 138 (162)
+++++++-+..++- ......|+=.++.. ++|+|+|.||.|..+.... +....-+.....+ ....+.|
T Consensus 80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E----iEtciec 155 (625)
T KOG1707|consen 80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE----IETCIEC 155 (625)
T ss_pred cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH----HHHHHhh
Confidence 47888777655422 22222334344432 5899999999998743322 2212223222222 1366789
Q ss_pred ecCCCCCHHHHHHHHHH
Q 031293 139 SSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 139 Sa~~~~g~~~l~~~i~~ 155 (162)
||++-.++.+++..-..
T Consensus 156 SA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQK 172 (625)
T ss_pred hhhhhhhhHhhhhhhhh
Confidence 99999888888876554
No 380
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.45 E-value=0.025 Score=40.36 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=41.3
Q ss_pred ceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEeccCCC
Q 031293 32 KLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
++.++|+| |.|= ..+....++|.+++|-.++. +...| ...++.++..++|..+|+||.+.-
T Consensus 165 ~~~IIDsaaG~gC----------------pVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 165 DLLIIDSAAGTGC----------------PVIASLKGADLAILVTEPTP-FGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred ceeEEecCCCCCC----------------hHHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 57888885 6632 12233345699999977763 33334 345577788899999999999653
No 381
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.31 E-value=0.025 Score=41.54 Aligned_cols=60 Identities=17% Similarity=0.034 Sum_probs=44.1
Q ss_pred HhCCceEEEEeccCCCC----c-HH----HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 94 RSQTKYQVVLTKTDTVF----P-ID----VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 94 ~~~~~~ivv~nK~Dl~~----~-~~----~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
..++|+++|++|+|.++ + +. ..-+..++++++=.++. ..+++|++...+++-|..+|...
T Consensus 220 NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga---aLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 220 NLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA---ALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred cCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc---eeEEeecccccchHHHHHHHHHH
Confidence 34799999999999842 1 11 22333556666666665 88999999999999999998753
No 382
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.27 E-value=0.058 Score=41.51 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=37.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF 110 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~ 110 (162)
.+.++||||.... . +..-..+... .....++.+++|+|+..+ .......+.... ..+ .-+|+||.|...
T Consensus 177 DvVIIDTAGr~~~--d----~~lm~El~~l-~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 177 DVIIVDTAGRHAL--E----EDLIEEMKEI-KEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTA 246 (437)
T ss_pred CEEEEECCCcccc--h----HHHHHHHHHH-HHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCC
Confidence 6899999997221 0 1111112222 122245899999999765 222223333222 234 367889999754
Q ss_pred c
Q 031293 111 P 111 (162)
Q Consensus 111 ~ 111 (162)
.
T Consensus 247 ~ 247 (437)
T PRK00771 247 K 247 (437)
T ss_pred c
Confidence 3
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.27 E-value=0.015 Score=39.76 Aligned_cols=72 Identities=25% Similarity=0.314 Sum_probs=38.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
..+.++||||..... ... ...+++++... ..+-+++|+++..+. .+.. ...+....+.. -+++||.|..
T Consensus 84 ~D~vlIDT~Gr~~~d--~~~----~~el~~~~~~~-~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD--EEL----LEELKKLLEAL-NPDEVHLVLSATMGQ--EDLEQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTH--HHH----HHHHHHHHHHH-SSSEEEEEEEGGGGG--HHHHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhh--HHH----HHHHHHHhhhc-CCccceEEEecccCh--HHHHHHHHHhhcccCc-eEEEEeecCC
Confidence 358999999983321 111 12233333333 347889999987642 2222 23333333333 5568999986
Q ss_pred CcH
Q 031293 110 FPI 112 (162)
Q Consensus 110 ~~~ 112 (162)
...
T Consensus 154 ~~~ 156 (196)
T PF00448_consen 154 ARL 156 (196)
T ss_dssp STT
T ss_pred CCc
Confidence 433
No 384
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.18 E-value=0.023 Score=37.07 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+..+.++||||.+. .....+ ..+|.++++..+.. .+..-+....-...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~-------------~~~~~~---~~Ad~~ivv~tpe~----~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ-------------SEVDIA---SMADTTVVVMAPGA----GDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh-------------hhhhHH---HhCCEEEEEECCCc----hhHHHHhhhhHhhhcCEEEEeCCC
Confidence 34688888888721 111222 23477777776652 111111111111223477788887
No 385
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.15 E-value=0.021 Score=44.27 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=44.8
Q ss_pred hCCceEEEEeccCCCCc---------HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 95 SQTKYQVVLTKTDTVFP---------IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.++|++||++|+|.+.. ....-+.+.++.++-.++. ..+++|++...+++-|+.+|...+
T Consensus 195 lGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA---sL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 195 LGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA---SLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred cCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC---eEEEeeccccccHHHHHHHHHHHh
Confidence 37899999999997631 1223444566666666765 889999999999999998887643
No 386
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.14 E-value=0.1 Score=33.55 Aligned_cols=76 Identities=11% Similarity=0.216 Sum_probs=41.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
..+.++|+|+. . .......+ ..+|.+++++++...-.......++.+... ..++.+|+|+.+.
T Consensus 45 yd~VIiD~p~~-~-----------~~~~~~~l---~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAG-I-----------SDNVLDFF---LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCC-C-----------CHHHHHHH---HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 56999999864 1 11122222 234999999888643212223344455332 3567899999974
Q ss_pred CCcHHHHHHHHHHHH
Q 031293 109 VFPIDVARRAMQIEE 123 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~ 123 (162)
..+..+..+.+.+
T Consensus 110 --~~~~~~~~~~~~~ 122 (139)
T cd02038 110 --PKEGKKVFKRLSN 122 (139)
T ss_pred --HHHHHHHHHHHHH
Confidence 2333334444443
No 387
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.14 E-value=0.0041 Score=46.46 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=46.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-C-----------------CceEEEcCCCCcccc-cCHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-G-----------------TKLCLVDLPGYGFAY-AKEEVKDAWEELVK 59 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~-----------------~~~~ivDtpG~~~~~-~~~~~~~~~~~~~~ 59 (162)
|||+||+. ....++++|.+|...+. ... + ..+.++|.||.-... .+ ..+-.
T Consensus 18 lfnaLT~~-~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g-------~Glgn 89 (368)
T TIGR00092 18 LFAATTNL-LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKG-------EGLGN 89 (368)
T ss_pred HHHHHhCC-CccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcc-------cCcch
Confidence 68999999 33378899999876554 222 1 147899999984331 11 11223
Q ss_pred HHHhcCcccceeEEEeecCC
Q 031293 60 EYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 60 ~~~~~~~~~~~vi~vid~~~ 79 (162)
.++...+.+|+++.|+++.+
T Consensus 90 ~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 90 QFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred HHHHHHHhCCEEEEEEeCCC
Confidence 44445566799999999853
No 388
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.11 E-value=0.013 Score=38.55 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=37.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEeecCCCCCcc--HHHHHHHHHHhCCceEEEEeccC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPR--DHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid~~~~~~~~--~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
.+..++||||.... . ...+.+ ....+.....++.++.++|+....... ...+...+. .-=++++||+|
T Consensus 87 ~d~I~IEt~G~~~p---~---~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~d 157 (158)
T cd03112 87 FDRIVIETTGLADP---G---PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTD 157 (158)
T ss_pred CCEEEEECCCcCCH---H---HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEeccc
Confidence 45789999998432 1 111111 223444555679999999986432111 111111121 12366889999
Q ss_pred C
Q 031293 108 T 108 (162)
Q Consensus 108 l 108 (162)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 5
No 389
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.06 E-value=0.038 Score=47.69 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCcccc--cCHHHHHHHHHHHHHHH--hcCcccceeEEEeecCCCCCccHH---HHHH-------HHH-H
Q 031293 30 GTKLCLVDLPGYGFAY--AKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDH---ELIS-------LME-R 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~vi~vid~~~~~~~~~~---~~~~-------~l~-~ 94 (162)
.++-+++||+|.-... ........|..++.... +..+.+++||+++|..+-...... .+.. .+. .
T Consensus 160 ~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 160 TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4458899999953321 12234556777766443 334568999999998653322111 1112 121 1
Q ss_pred --hCCceEEEEeccCCCC
Q 031293 95 --SQTKYQVVLTKTDTVF 110 (162)
Q Consensus 95 --~~~~~ivv~nK~Dl~~ 110 (162)
...|+.+++||+|++.
T Consensus 240 lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred hCCCCCEEEEEecchhhc
Confidence 2589999999999873
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=96.06 E-value=0.011 Score=43.22 Aligned_cols=42 Identities=26% Similarity=0.452 Sum_probs=29.7
Q ss_pred ChhcccCCCCceeccCCCC-------cceEEEEEEeCCceEEEcCCCCcc
Q 031293 1 MLNALTRQWGVVRTSDKPG-------LTQTINFFKLGTKLCLVDLPGYGF 43 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g-------~t~~~~~~~~~~~~~ivDtpG~~~ 43 (162)
|+|+|.+.. ...++..++ ||+....+.......++||||+..
T Consensus 180 lin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 180 LLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred HHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 688998873 344444432 777777777765679999999854
No 391
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.98 E-value=0.002 Score=48.07 Aligned_cols=42 Identities=31% Similarity=0.530 Sum_probs=37.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGF 43 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~ 43 (162)
+||+|..+ ..+-+++.||.|+.+....++.++.++|.||.-.
T Consensus 268 vINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 268 VINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVP 309 (435)
T ss_pred HHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceee
Confidence 58999888 5788999999999999988988899999999833
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.91 E-value=0.016 Score=42.08 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=30.1
Q ss_pred ChhcccCCCCce--eccC----CCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVV--RTSD----KPGLTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~--~~~~----~~g~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
|+|+|.+..... .+|. =..||+...++.+...-.++||||+...
T Consensus 180 LiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~ 229 (301)
T COG1162 180 LINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSL 229 (301)
T ss_pred HHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCcc
Confidence 688888763221 1222 2457888888988655899999999554
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.72 E-value=0.12 Score=34.42 Aligned_cols=73 Identities=23% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH-HHhCCceEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l-~~~~~~~ivv~nK~Dl 108 (162)
+..+.++||||.... .. + .-..+..+.. ....+.+++|+|+..+. ...+....+ +..+ ..-+++||.|.
T Consensus 82 ~~d~viiDt~g~~~~--~~---~-~l~~l~~l~~-~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQI--DE---N-LMEELKKIKR-VVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchh--hH---H-HHHHHHHHHh-hcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcC
Confidence 345899999997321 00 0 1111222221 22358999999986432 222333333 3334 35777799998
Q ss_pred CCcH
Q 031293 109 VFPI 112 (162)
Q Consensus 109 ~~~~ 112 (162)
....
T Consensus 152 ~~~~ 155 (173)
T cd03115 152 DARG 155 (173)
T ss_pred CCCc
Confidence 7433
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.69 E-value=0.16 Score=39.09 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=37.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
..+.++||||.... .... -..+..+.. ....+.+++|+|+..+ ............ .++ .=+++||.|..
T Consensus 183 ~DvVIIDTaGr~~~--d~~l----~~eL~~i~~-~~~p~e~lLVvda~tg--q~~~~~a~~f~~-~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQI--DEEL----MEELAAIKE-ILNPDEILLVVDAMTG--QDAVNTAKTFNE-RLGLTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCcccc--CHHH----HHHHHHHHH-hhCCceEEEEEeccch--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 45899999996221 1111 111222222 2235788999998643 222333333332 223 46778999965
Q ss_pred C
Q 031293 110 F 110 (162)
Q Consensus 110 ~ 110 (162)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 395
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.66 E-value=0.22 Score=36.88 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=51.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHH-HHHhcCcccceeEEEeecCCCCCccHHHHHHHH-HHhCCceEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVK-EYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-ERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l-~~~~~~~ivv~nK~Dl~ 109 (162)
...+|-|.|.... .+.- ..+.. ..+...-..|.++-|+|+......... ..+.+ .....-=++++||.|++
T Consensus 86 D~ivIEtTGlA~P---~pv~---~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia~AD~ivlNK~Dlv 158 (323)
T COG0523 86 DRLVIETTGLADP---APVI---QTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLAFADVIVLNKTDLV 158 (323)
T ss_pred CEEEEeCCCCCCC---HHHH---HHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHHhCcEEEEecccCC
Confidence 4788999998553 1111 11222 233344456899999999764322221 11111 11122237888999999
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293 110 FPIDVARRAMQIEESLKANNSLVQPVMMVSS 140 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 140 (162)
+...... +++.+...++ ..+++.+|.
T Consensus 159 ~~~~l~~----l~~~l~~lnp-~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEA----LEARLRKLNP-RARIIETSY 184 (323)
T ss_pred CHHHHHH----HHHHHHHhCC-CCeEEEccc
Confidence 8775433 3333333332 257777765
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=95.60 E-value=0.14 Score=39.48 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=36.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
..+.++||||.... .... ...+...... ...+.+++|+|+..+ .......+...+ ..+ .-+|+||.|..
T Consensus 184 ~DvVIIDTaGrl~~--d~~l----m~eL~~i~~~-v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHI--DEEL----MDELKAIKAA-VNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCccc--CHHH----HHHHHHHHHh-hCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc
Confidence 45899999996221 1111 1112222111 234777999998643 222333333332 233 36777999965
Q ss_pred C
Q 031293 110 F 110 (162)
Q Consensus 110 ~ 110 (162)
.
T Consensus 254 ~ 254 (433)
T PRK10867 254 A 254 (433)
T ss_pred c
Confidence 3
No 397
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.44 E-value=0.16 Score=36.64 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=37.3
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
..+.++||||..... .. .++ .+.+++... ..+.+++|+++.... ....+.++.... .+ --+++||.|..
T Consensus 155 ~D~ViIDt~Gr~~~~--~~---~l~-el~~~~~~~-~~~~~~LVl~a~~~~-~d~~~~~~~f~~--~~~~~~I~TKlDet 224 (270)
T PRK06731 155 VDYILIDTAGKNYRA--SE---TVE-EMIETMGQV-EPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDET 224 (270)
T ss_pred CCEEEEECCCCCcCC--HH---HHH-HHHHHHhhh-CCCeEEEEEcCccCH-HHHHHHHHHhCC--CCCCEEEEEeecCC
Confidence 368999999983211 11 111 122333322 346788999886431 111223333332 33 36777999987
Q ss_pred Cc
Q 031293 110 FP 111 (162)
Q Consensus 110 ~~ 111 (162)
..
T Consensus 225 ~~ 226 (270)
T PRK06731 225 AS 226 (270)
T ss_pred CC
Confidence 53
No 398
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.39 E-value=0.0049 Score=49.52 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=43.6
Q ss_pred ceEEEcCCCCcccc---cCHHHHHHHHHHHHHHHhcCcccceeEEEee-cCCCC-CccHHHHHHHHHHhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAY---AKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGV-KPRDHELISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid-~~~~~-~~~~~~~~~~l~~~~~~~ivv~nK~ 106 (162)
.++++|.||.-... .+.+.......++..|+... .++++.+. ++..+ +.....+....+..+.+.+-|++|.
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~---~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKP---NRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhcccc---chhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 48999999985543 34445566677777777655 34443333 33222 2222333344444455667777777
Q ss_pred CCCCc
Q 031293 107 DTVFP 111 (162)
Q Consensus 107 Dl~~~ 111 (162)
|+.++
T Consensus 210 Dlmdk 214 (657)
T KOG0446|consen 210 DFMDK 214 (657)
T ss_pred Hhhhc
Confidence 76543
No 399
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.28 Score=37.22 Aligned_cols=70 Identities=11% Similarity=0.251 Sum_probs=37.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCc-eEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTK-YQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~-~ivv~nK~Dl 108 (162)
..+.+|||||..... ...-..+..+.... ..+.+++|+++.. ...+..+.+... ..+ --+++||.|.
T Consensus 286 ~D~VLIDTAGr~~~d------~~~l~EL~~l~~~~-~p~~~~LVLsag~----~~~d~~~i~~~f~~l~i~glI~TKLDE 354 (407)
T PRK12726 286 VDHILIDTVGRNYLA------EESVSEISAYTDVV-HPDLTCFTFSSGM----KSADVMTILPKLAEIPIDGFIITKMDE 354 (407)
T ss_pred CCEEEEECCCCCccC------HHHHHHHHHHhhcc-CCceEEEECCCcc----cHHHHHHHHHhcCcCCCCEEEEEcccC
Confidence 468999999983211 11112233333322 3466677776632 122333444333 244 3777899998
Q ss_pred CCc
Q 031293 109 VFP 111 (162)
Q Consensus 109 ~~~ 111 (162)
...
T Consensus 355 T~~ 357 (407)
T PRK12726 355 TTR 357 (407)
T ss_pred CCC
Confidence 643
No 400
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=95.28 E-value=0.11 Score=36.36 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=30.5
Q ss_pred ChhcccCCC-CceeccCCCCcceEEEEEEe------CCceEEEcCCCCccccc
Q 031293 1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL------GTKLCLVDLPGYGFAYA 46 (162)
Q Consensus 1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~------~~~~~ivDtpG~~~~~~ 46 (162)
|+|.|++.. ........+.+|+.+-.... +..+.++||||.+....
T Consensus 23 llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 23 LLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred HHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 589999883 23333445677876665422 35699999999976543
No 401
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.22 E-value=0.2 Score=33.16 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=38.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
.+.++||||.. .......+ ..+|.+++++++...-.......++.+...+.+ ..+++|+.|.-
T Consensus 64 d~viiD~p~~~------------~~~~~~~l---~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGI------------ERGFITAI---APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCC------------cHHHHHHH---HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 59999998641 11122222 345899999888753322233455566555544 67899999864
No 402
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=95.20 E-value=0.3 Score=35.05 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccH-HHHHHHHHHh------
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRD-HELISLMERS------ 95 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~-~~~~~~l~~~------ 95 (162)
..+|...|..|+ ....+++++-.+.+..++||+.+++- .+... .+.+...+..
T Consensus 201 kv~FhMfDVGGQ-------------RDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL 267 (379)
T KOG0099|consen 201 KVNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL 267 (379)
T ss_pred ccceeeeccCCc-------------hhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH
Confidence 345888899998 44445555555666889999887641 22211 2223322221
Q ss_pred -CCceEEEEeccCCCCc
Q 031293 96 -QTKYQVVLTKTDTVFP 111 (162)
Q Consensus 96 -~~~~ivv~nK~Dl~~~ 111 (162)
.+.+|+.+||.|++.+
T Consensus 268 ~tisvIlFLNKqDllae 284 (379)
T KOG0099|consen 268 RTISVILFLNKQDLLAE 284 (379)
T ss_pred hhhheeEEecHHHHHHH
Confidence 3669999999998743
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.15 E-value=0.51 Score=36.33 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=45.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
+..+.+|||||.... .... ...+.+++.......-+++|+++.... ....+....+. ..++ -+++||.|.
T Consensus 299 ~~DlVlIDt~G~~~~--d~~~----~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~--~~~~~~vI~TKlDe 369 (424)
T PRK05703 299 DCDVILIDTAGRSQR--DKRL----IEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFS--RLPLDGLIFTKLDE 369 (424)
T ss_pred CCCEEEEeCCCCCCC--CHHH----HHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhC--CCCCCEEEEecccc
Confidence 346999999998321 1111 122334443222235667788886431 11112223332 2333 688899997
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSS 140 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 140 (162)
..... . +.+.+...+ .|+.+++.
T Consensus 370 t~~~G--~----i~~~~~~~~---lPv~yit~ 392 (424)
T PRK05703 370 TSSLG--S----ILSLLIESG---LPISYLTN 392 (424)
T ss_pred ccccc--H----HHHHHHHHC---CCEEEEeC
Confidence 53322 2 222233333 37777763
No 404
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.29 Score=36.95 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=38.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CC-------ceEE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QT-------KYQV 101 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~-------~~iv 101 (162)
+..+.+|||||..... ......+.. +.......-.++|+++..+..... +.+...... +. .--+
T Consensus 215 ~~DlVLIDTaG~~~~d------~~l~e~La~-L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 215 NKHMVLIDTIGMSQRD------RTVSDQIAM-LHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred CCCEEEEcCCCCCccc------HHHHHHHHH-HhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEE
Confidence 3469999999983210 111122222 223333456788999876543322 222222221 22 2367
Q ss_pred EEeccCCCC
Q 031293 102 VLTKTDTVF 110 (162)
Q Consensus 102 v~nK~Dl~~ 110 (162)
++||.|...
T Consensus 287 I~TKlDEt~ 295 (374)
T PRK14722 287 ILTKLDEAS 295 (374)
T ss_pred EEeccccCC
Confidence 889999764
No 405
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.12 E-value=0.0078 Score=39.78 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=24.4
Q ss_pred ChhcccCCCCce--eccCC----CCcceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVV--RTSDK----PGLTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~--~~~~~----~g~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
|+|+|.+..... .+|.. ..||+....+.+.....++||||+...
T Consensus 51 LiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 51 LINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF 100 (161)
T ss_dssp HHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred HHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence 578888873211 23332 346777778888667899999999554
No 406
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.06 E-value=0.067 Score=38.87 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred ChhcccCCCCceecc-------CCCCcceEEEEEEeCCceEEEcCCCCcc
Q 031293 1 MLNALTRQWGVVRTS-------DKPGLTQTINFFKLGTKLCLVDLPGYGF 43 (162)
Q Consensus 1 lin~L~~~~~~~~~~-------~~~g~t~~~~~~~~~~~~~ivDtpG~~~ 43 (162)
|+|+|++.. ...++ .-+++|+....+.+.....++||||+..
T Consensus 177 lin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 177 LINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred HHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 578888873 22222 2344788887777765578999999954
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.69 Score=36.68 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=36.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.+|||||.+.. +. .. ...+.. +..... ...++|+++....... .+.++.+.. ..+.-+|+||+|...
T Consensus 429 ~DLVLIDTaG~s~~---D~--~l-~eeL~~-L~aa~~-~a~lLVLpAtss~~Dl-~eii~~f~~-~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQR---DR--AL-AAQLNW-LRAARQ-VTSLLVLPANAHFSDL-DEVVRRFAH-AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchh---hH--HH-HHHHHH-HHHhhc-CCcEEEEECCCChhHH-HHHHHHHHh-hCCeEEEEecCcCcc
Confidence 46999999998321 00 00 111111 111111 3567777876542222 223333333 245789999999853
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.27 Score=37.55 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=37.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
..+.++||||..... . ..+. .+.+++... ..+.+++|+|+.... ....++.+.+.. .+ -=+++||.|..
T Consensus 321 ~DvVLIDTaGRs~kd--~---~lm~-EL~~~lk~~-~PdevlLVLsATtk~-~d~~~i~~~F~~--~~idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRA--S---ETVE-EMIETMGQV-EPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcC--H---HHHH-HHHHHHhhc-CCCeEEEEECCccCh-HHHHHHHHHhcC--CCCCEEEEEcccCC
Confidence 368999999973211 1 1111 123333322 246778888875321 111233333332 34 36777999987
Q ss_pred Cc
Q 031293 110 FP 111 (162)
Q Consensus 110 ~~ 111 (162)
..
T Consensus 391 ~k 392 (436)
T PRK11889 391 AS 392 (436)
T ss_pred CC
Confidence 53
No 409
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=95.00 E-value=0.18 Score=29.31 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=32.9
Q ss_pred eEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccC
Q 031293 33 LCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTD 107 (162)
Q Consensus 33 ~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~D 107 (162)
+.++|+| |.|+. .-.+-+++. .+.+++|-.+.+-..........++++.++|++ +|-|..-
T Consensus 3 ~LiiD~PPGTgD~----------~l~~~~~~~----~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~ 65 (81)
T PF10609_consen 3 YLIIDLPPGTGDE----------HLTLMQYLP----IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY 65 (81)
T ss_dssp EEEEE--SCSSSH----------HHHHHHHH------SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred EEEEeCCCCCCcH----------HHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 7899995 88764 222333332 367777766654333333456678888899976 6666543
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.65 Score=35.33 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=39.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-C-ceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-T-KYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~-~~ivv~nK~D 107 (162)
+..+.++||||.... .. .. -..+.+++.......-+++|+|+..+. ..+.+.+.... . +-=+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~---~~--~~-l~el~~~l~~~~~~~e~~LVlsat~~~----~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---DF--MK-LAEMKELLNACGRDAEFHLAVSSTTKT----SDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCcc---CH--HH-HHHHHHHHHhcCCCCeEEEEEcCCCCH----HHHHHHHHHhcCCCCCEEEEEecc
Confidence 346999999997321 11 01 112334444332223578999987652 22223444332 3 3477889999
Q ss_pred CCCcH
Q 031293 108 TVFPI 112 (162)
Q Consensus 108 l~~~~ 112 (162)
.....
T Consensus 324 et~~~ 328 (388)
T PRK12723 324 ETTCV 328 (388)
T ss_pred CCCcc
Confidence 86443
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.63 E-value=0.056 Score=39.41 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=28.0
Q ss_pred CceeccCCCCcceEEEE-EEe--CCceEEEcCCCCccccc
Q 031293 10 GVVRTSDKPGLTQTINF-FKL--GTKLCLVDLPGYGFAYA 46 (162)
Q Consensus 10 ~~~~~~~~~g~t~~~~~-~~~--~~~~~ivDtpG~~~~~~ 46 (162)
..+.++.+||.|+.+.. +.+ .+.+.++||||....+.
T Consensus 172 k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 172 KAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred cceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 46789999999997764 333 55599999999966543
No 412
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=94.62 E-value=0.035 Score=40.95 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=48.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--------------------CCceEEEcCCCCccc-ccCHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFA-YAKEEVKDAWEELVK 59 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~ivDtpG~~~~-~~~~~~~~~~~~~~~ 59 (162)
|||+||+. . +..++.|.+|.+.+.... ...+++.|.+|.-.+ +.+ +.+-.
T Consensus 36 ~fnalT~~-~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G-------~GLGN 106 (391)
T KOG1491|consen 36 FFNALTKS-K-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAG-------EGLGN 106 (391)
T ss_pred HHHHHhcC-C-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccC-------cCchH
Confidence 58999999 3 458999999998876433 114899999998332 222 22334
Q ss_pred HHHhcCcccceeEEEeecCC
Q 031293 60 EYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 60 ~~~~~~~~~~~vi~vid~~~ 79 (162)
.++...+.+|.++.|+++.+
T Consensus 107 ~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 107 KFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHhhhhccceeEEEEecC
Confidence 45555566799999999753
No 413
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=94.55 E-value=0.43 Score=33.57 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=36.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
..+.++|||+- . .......+ ..+|.+++++++...-........+.....+.+ ..+++|+.+-
T Consensus 109 yD~VIiD~p~~-~-----------~~~~~~~l---~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 109 TDFLLIDAPAG-L-----------ERDAVTAL---AAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred CCEEEEeCCCc-c-----------CHHHHHHH---HhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 46999999853 1 11222222 235899999887643222222333444444566 4689999985
No 414
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.019 Score=42.88 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=49.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccHHHHHHHHHHhC-CceEEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHELISLMERSQ-TKYQVVL 103 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~~~~~~~l~~~~-~~~ivv~ 103 (162)
.++++|.||| ..+.+.++.+...+|+.++++.+..+ ...+..++......++ .+.++-+
T Consensus 83 ~i~iid~pgh-------------~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v 149 (391)
T KOG0052|consen 83 YVTIIDAPGH-------------RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 149 (391)
T ss_pred EEEEecCCCC-------------CceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEe
Confidence 4889999999 77788888888899999999887322 2333344433333444 5689999
Q ss_pred eccCCCCcHHH
Q 031293 104 TKTDTVFPIDV 114 (162)
Q Consensus 104 nK~Dl~~~~~~ 114 (162)
||+|...+...
T Consensus 150 ~k~D~~~~~~s 160 (391)
T KOG0052|consen 150 NKMDSTEPPYS 160 (391)
T ss_pred ecccccCCCcc
Confidence 99998754443
No 415
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.52 E-value=0.17 Score=33.48 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=26.0
Q ss_pred ccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
.+|.++++..+...-.......++.+.+.+.++ -+++|+.+-
T Consensus 91 ~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 91 PIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 347888887766433233344556666666664 577888774
No 416
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.47 E-value=0.15 Score=31.13 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=33.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC----ceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT----KYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~----~~ivv~nK 105 (162)
.+.++|||+.- .......+ ..+|.+++++++...-.......++.+.+.+. ++.+|+|+
T Consensus 44 D~IIiDtpp~~------------~~~~~~~l---~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSL------------DEVSLAAL---DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCc------------CHHHHHHH---HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999998651 11222232 23489999988765322233344455554432 46677775
No 417
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.35 E-value=0.0057 Score=45.91 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=34.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 41 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~ 41 (162)
+||.|-.+ .+++|++.||-|.--.+.++-.+++++|+||.
T Consensus 323 iINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 323 IINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred HHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCc
Confidence 47899888 68999999999987776677777999999997
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.27 E-value=1 Score=34.37 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=39.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCce-EEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKY-QVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~~-ivv~nK~Dl 108 (162)
..+.+|||.|.+.-. ......+++++..... .-+++++++... ...+...+... .+|+ -+++||+|.
T Consensus 282 ~d~ILVDTaGrs~~D------~~~i~el~~~~~~~~~-i~~~Lvlsat~K----~~dlkei~~~f~~~~i~~~I~TKlDE 350 (407)
T COG1419 282 CDVILVDTAGRSQYD------KEKIEELKELIDVSHS-IEVYLVLSATTK----YEDLKEIIKQFSLFPIDGLIFTKLDE 350 (407)
T ss_pred CCEEEEeCCCCCccC------HHHHHHHHHHHhcccc-ceEEEEEecCcc----hHHHHHHHHHhccCCcceeEEEcccc
Confidence 369999999983321 1113346666665533 566777777642 12222333333 3554 677899997
Q ss_pred CC
Q 031293 109 VF 110 (162)
Q Consensus 109 ~~ 110 (162)
..
T Consensus 351 T~ 352 (407)
T COG1419 351 TT 352 (407)
T ss_pred cC
Confidence 63
No 419
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.11 E-value=0.41 Score=36.66 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=39.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF 110 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~ 110 (162)
.+.||||+|-- ...+..-..+++ +...-++|-+++|+||..+ .......+..++ ..++ =+++||+|--.
T Consensus 184 DvvIvDTAGRl------~ide~Lm~El~~-Ik~~~~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIlTKlDGda 253 (451)
T COG0541 184 DVVIVDTAGRL------HIDEELMDELKE-IKEVINPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVILTKLDGDA 253 (451)
T ss_pred CEEEEeCCCcc------cccHHHHHHHHH-HHhhcCCCeEEEEEecccc--hHHHHHHHHHhh-hcCCceEEEEcccCCC
Confidence 69999999851 111111122222 2233456999999999765 222333333332 3453 67779999754
Q ss_pred cH
Q 031293 111 PI 112 (162)
Q Consensus 111 ~~ 112 (162)
+.
T Consensus 254 RG 255 (451)
T COG0541 254 RG 255 (451)
T ss_pred cc
Confidence 44
No 420
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.10 E-value=0.17 Score=34.63 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=27.2
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
+|.+++|+++...-........+.+...+.+ +-+|+||.|..
T Consensus 151 ~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 151 CDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 4888888887643333334455666666666 56788988853
No 421
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=0.54 Score=33.39 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=38.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-HHHHh----CCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERS----QTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-~l~~~----~~~~ivv~nK~ 106 (162)
++.+||.||+-...-+. -.++... +++...++|||+.......-..+.. ..+.. ++.+=+.+.|.
T Consensus 76 nf~v~dfPGQ~~~Fd~s---~D~e~iF-------~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKv 145 (347)
T KOG3887|consen 76 NFQVWDFPGQMDFFDPS---FDYEMIF-------RGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKV 145 (347)
T ss_pred ceEEeecCCccccCCCc---cCHHHHH-------hccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEec
Confidence 58899999982221100 0012222 2347889999997532111111111 11111 45688899999
Q ss_pred CCCCcHH
Q 031293 107 DTVFPID 113 (162)
Q Consensus 107 Dl~~~~~ 113 (162)
|-++++.
T Consensus 146 DGLsdd~ 152 (347)
T KOG3887|consen 146 DGLSDDF 152 (347)
T ss_pred cCCchhh
Confidence 9875543
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.94 E-value=0.54 Score=38.83 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=37.0
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHh-CC-ceEEEEeccC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERS-QT-KYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~-~~-~~ivv~nK~D 107 (162)
..+.+|||||..... . .....+.... .....+-+++|+|+.... .+. ++.+..... .. +-=+++||.|
T Consensus 264 ~D~VLIDTAGRs~~d--~----~l~eel~~l~-~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~~i~glIlTKLD 334 (767)
T PRK14723 264 KHLVLIDTVGMSQRD--R----NVSEQIAMLC-GVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGEDVDGCIITKLD 334 (767)
T ss_pred CCEEEEeCCCCCccC--H----HHHHHHHHHh-ccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccCCCCEEEEeccC
Confidence 469999999962211 0 0112222222 223346788999987431 111 222333221 11 2367789999
Q ss_pred CCCcH
Q 031293 108 TVFPI 112 (162)
Q Consensus 108 l~~~~ 112 (162)
.....
T Consensus 335 Et~~~ 339 (767)
T PRK14723 335 EATHL 339 (767)
T ss_pred CCCCc
Confidence 87533
No 423
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=93.83 E-value=0.65 Score=32.78 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=36.3
Q ss_pred CCceEEEEeccCCCCcHHH------------------HHHHHHHHHHHHhcCCCCCC---eEEeecCCCCCHHHHHHHHH
Q 031293 96 QTKYQVVLTKTDTVFPIDV------------------ARRAMQIEESLKANNSLVQP---VMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 96 ~~~~ivv~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+.++|+.+||.|++.+.-. +...+.+-+.....++...+ ..+++|..-+++..++..+.
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 4679999999999744322 12222222222222222222 34577888899999998887
Q ss_pred Hh
Q 031293 155 KI 156 (162)
Q Consensus 155 ~~ 156 (162)
..
T Consensus 346 Dt 347 (359)
T KOG0085|consen 346 DT 347 (359)
T ss_pred HH
Confidence 53
No 424
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.72 E-value=0.3 Score=35.12 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHh--cCcccceeEEEeecCCCCCccH-----HHHHH----HHHH------hCCceEEEEeccCCCC
Q 031293 49 EVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRD-----HELIS----LMER------SQTKYQVVLTKTDTVF 110 (162)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~~~~vi~vid~~~~~~~~~-----~~~~~----~l~~------~~~~~ivv~nK~Dl~~ 110 (162)
.....|..+++-..+ .....++|++.++..+-..... ..+.. .+.+ ..+|+.+|+||+|++.
T Consensus 5 ~d~~~W~~~L~lL~~~R~r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 5 EDAAEWQAFLDLLRRHRPRQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence 345567666555433 3345799999999754221111 11222 2221 2589999999999984
No 425
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=0.69 Score=35.12 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=36.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHH--hcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYV--STRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
.+.|+||.|-... . ..++.++. ...-..|.+++|.|++-+- .........++ .+.+ -+++||.|-
T Consensus 185 dvIIvDTSGRh~q-----e----~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ--aae~Qa~aFk~-~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 185 DVIIVDTSGRHKQ-----E----ASLFEEMKQVSKAIKPDEIIFVMDASIGQ--AAEAQARAFKE-TVDVGAVILTKLDG 252 (483)
T ss_pred cEEEEeCCCchhh-----h----HHHHHHHHHHHhhcCCCeEEEEEeccccH--hHHHHHHHHHH-hhccceEEEEeccc
Confidence 5899999985211 1 22233321 2223469999999998652 22223333332 2222 566699995
Q ss_pred C
Q 031293 109 V 109 (162)
Q Consensus 109 ~ 109 (162)
-
T Consensus 253 h 253 (483)
T KOG0780|consen 253 H 253 (483)
T ss_pred C
Confidence 3
No 426
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=93.61 E-value=0.83 Score=36.19 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~ 157 (162)
+++.++.+++|++|++||.|.-.+.+.+ .+++.+.+.+. +++.+. +.-|+|-.++-+.+.+.+
T Consensus 364 HIenvr~FGvPvVVAINKFd~DTe~Ei~----~I~~~c~e~Gv---~va~~~~~~~Gg~Gai~LA~aVveA~ 428 (557)
T PRK13505 364 HIENIRKFGVPVVVAINKFVTDTDAEIA----ALKELCEELGV---EVALSEVWAKGGEGGVELAEKVVELI 428 (557)
T ss_pred HHHHHHHcCCCEEEEEeCCCCCCHHHHH----HHHHHHHHcCC---CEEEecccccCCcchHHHHHHHHHHH
Confidence 5566777899999999999986555554 44555555543 554333 344677666666665544
No 427
>PHA02518 ParA-like protein; Provisional
Probab=93.16 E-value=1.5 Score=29.84 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH---h--CCc-eEEEE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER---S--QTK-YQVVL 103 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~---~--~~~-~ivv~ 103 (162)
...+.++||||.- .......+. .+|.++.++.++..--....++.+.++. . +.| ..++.
T Consensus 76 ~~d~viiD~p~~~------------~~~~~~~l~---~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 140 (211)
T PHA02518 76 GYDYVVVDGAPQD------------SELARAALR---IADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFII 140 (211)
T ss_pred cCCEEEEeCCCCc------------cHHHHHHHH---HCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEE
Confidence 3469999999751 333444443 3499999988764211112223333332 1 344 45677
Q ss_pred eccCC
Q 031293 104 TKTDT 108 (162)
Q Consensus 104 nK~Dl 108 (162)
|+.+.
T Consensus 141 n~~~~ 145 (211)
T PHA02518 141 SRAIK 145 (211)
T ss_pred eccCC
Confidence 87654
No 428
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=0.6 Score=40.36 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=48.7
Q ss_pred CCceEEEcCCCCcccc--cCHHHHHHHHHH---HHHHHhcCcccceeEEEeecCCCCCccHHH---HH-------HHHHH
Q 031293 30 GTKLCLVDLPGYGFAY--AKEEVKDAWEEL---VKEYVSTRVSLKRVCLLIDTKWGVKPRDHE---LI-------SLMER 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~vi~vid~~~~~~~~~~~---~~-------~~l~~ 94 (162)
.++-+++||.|--..- .+......|..+ ++++ +..+.+++|++-++..+-.+....+ +. +.+.+
T Consensus 173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~-R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKY-RRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251 (1188)
T ss_pred ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHh-ccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999853332 233445566554 3444 5556789999999975532222211 12 22222
Q ss_pred ---hCCceEEEEeccCCCC
Q 031293 95 ---SQTKYQVVLTKTDTVF 110 (162)
Q Consensus 95 ---~~~~~ivv~nK~Dl~~ 110 (162)
...|+.+++||+|++.
T Consensus 252 tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 252 TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hhccCCceEEEEecccccc
Confidence 1589999999999985
No 429
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.78 E-value=0.41 Score=33.86 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=36.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl 108 (162)
..+.++|+|+.- .......+ ..+|.+++++.+...--.....+++.+...+. ++.+++|+.+.
T Consensus 112 ~D~viiD~p~~~------------~~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGI------------ESGFRNAV---APADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCc------------CHHHHHHH---HhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 468999998641 11122222 23588888887763221222334455554443 57889999874
No 430
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=92.77 E-value=0.84 Score=34.11 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=44.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHH----HHhcCcccceeEEEeecCCCCCcc--------------------HHH
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKE----YVSTRVSLKRVCLLIDTKWGVKPR--------------------DHE 87 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vi~vid~~~~~~~~--------------------~~~ 87 (162)
...++.|.|.... ..++.. .+...-..+.++.|+|+....... ...
T Consensus 94 d~IvIEtsG~a~P----------~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (341)
T TIGR02475 94 DHILIETSGLALP----------KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETP 163 (341)
T ss_pred CEEEEeCCCCCCH----------HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccch
Confidence 5789999998442 222222 222333568899999996422100 000
Q ss_pred HHHH-HHHhCCceEEEEeccCCCCcHHHHHHHHHHHH
Q 031293 88 LISL-MERSQTKYQVVLTKTDTVFPIDVARRAMQIEE 123 (162)
Q Consensus 88 ~~~~-l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~ 123 (162)
+... ......-=++++||+|+++..+.....+.+++
T Consensus 164 ~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 164 LEELFEDQLACADLVILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred HHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHH
Confidence 0111 11112234788899999987776655544443
No 431
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=92.76 E-value=2.2 Score=29.58 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=42.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
..+.++|||..+.. ....+...+.. ..++.+++|+.+...........++.++..+.+ .-+|+|+....
T Consensus 114 yD~IIiD~pp~~~~---------~~~l~~~~l~~-~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHT---------LRLLVRELLTD-PERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHH---------HHHHHHHHccC-CCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 56999999854211 01122222211 124788888888754444455667788777766 57888998754
No 432
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.74 E-value=2.9 Score=32.27 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=37.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccHHHHHHHHHHh-CCc-eEEEEec
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMERS-QTK-YQVVLTK 105 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~-~ivv~nK 105 (162)
+..+.++||||..... ...- ..+..++... ....-+++|+|+..+. ..+.+.+... ..+ -=+++||
T Consensus 299 ~~D~VLIDTaGr~~rd--~~~l----~eL~~~~~~~~~~~~~e~~LVLsAt~~~----~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 299 GSELILIDTAGYSHRN--LEQL----ERMQSFYSCFGEKDSVENLLVLSSTSSY----HHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCCEEEEeCCCCCccC--HHHH----HHHHHHHHhhcCCCCCeEEEEEeCCCCH----HHHHHHHHHhcCCCCCEEEEEc
Confidence 3468999999983211 1111 1233333222 1124678888987642 1222222222 233 4677899
Q ss_pred cCCCCcH
Q 031293 106 TDTVFPI 112 (162)
Q Consensus 106 ~Dl~~~~ 112 (162)
.|.....
T Consensus 369 LDEt~~~ 375 (432)
T PRK12724 369 LDEADFL 375 (432)
T ss_pred ccCCCCc
Confidence 9986433
No 433
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=92.11 E-value=0.73 Score=30.91 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=41.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC--C-ceEEEEeccC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--T-KYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~--~-~~ivv~nK~D 107 (162)
..+.++|||+.- .......+. .+|.++.++++...-......+.+.++..+ . ..-+|+||.+
T Consensus 95 yD~iiiD~~~~~------------~~~~~~~l~---~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~ 159 (195)
T PF01656_consen 95 YDYIIIDTPPGL------------SDPVRNALA---AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVD 159 (195)
T ss_dssp SSEEEEEECSSS------------SHHHHHHHH---TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEET
T ss_pred ccceeecccccc------------cHHHHHHHH---hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeC
Confidence 569999998641 122333333 358999998876421122233445555555 2 4688999998
Q ss_pred CCCcHHHHH
Q 031293 108 TVFPIDVAR 116 (162)
Q Consensus 108 l~~~~~~~~ 116 (162)
.-.......
T Consensus 160 ~~~~~~~~~ 168 (195)
T PF01656_consen 160 PGNESKLQE 168 (195)
T ss_dssp SCCHHHHHH
T ss_pred CCccchHHH
Confidence 754444443
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.03 E-value=1.1 Score=33.18 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=51.9
Q ss_pred CCceEEEcCCCCcccccC-HHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAK-EEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~D 107 (162)
+..+.++||+|-=-+... ...-+++.+.++.... ...+-+++++||..+ +......+..++. .+ -=+++||.|
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~--~ap~e~llvlDAttG--qnal~QAk~F~ea-v~l~GiIlTKlD 295 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDP--DAPHEILLVLDATTG--QNALSQAKIFNEA-VGLDGIILTKLD 295 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccC--CCCceEEEEEEcccC--hhHHHHHHHHHHh-cCCceEEEEecc
Confidence 446999999985111110 0011111111111111 112448888899866 3334444444432 33 356779999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
-..+...- -.+...++ .|+.++. -|+++++|..
T Consensus 296 gtAKGG~i---l~I~~~l~------~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 296 GTAKGGII---LSIAYELG------IPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred cCCCccee---eeHHHHhC------CCEEEEe--CCCChhhccc
Confidence 65443221 11222222 4887775 5666776643
No 435
>CHL00175 minD septum-site determining protein; Validated
Probab=91.80 E-value=0.63 Score=33.53 Aligned_cols=63 Identities=8% Similarity=0.122 Sum_probs=35.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-KYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~-~~ivv~nK~Dl 108 (162)
..+.++|||+.- .......+ ..+|.+++|++++..--.....+.+.+...+. .+-+|+|+.+-
T Consensus 127 yD~VIiDtpp~~------------~~~~~~~l---~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 127 YDYILIDCPAGI------------DVGFINAI---APAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCEEEEeCCCCC------------CHHHHHHH---HhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 458999998541 12222332 23488888887764221222334455555443 36788899874
No 436
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.60 E-value=1 Score=35.83 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=50.7
Q ss_pred cccceeEEEeecCCCCCccHHHHHHHHH-----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293 66 VSLKRVCLLIDTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 140 (162)
Q Consensus 66 ~~~~~vi~vid~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 140 (162)
..||++.++.|++.+. ...++..+. ....|+++|.+|+|+-...+ ....+- .+.+...+. .+.+.+|+
T Consensus 494 ~~cDv~~~~YDsS~p~---sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q-~~~iqp-de~~~~~~i--~~P~~~S~ 566 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPR---SFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQ-RYSIQP-DEFCRQLGL--PPPIHISS 566 (625)
T ss_pred ceeeeEEEecccCCch---HHHHHHHHHHHhhhccCCceEEEeeccccchhhh-ccCCCh-HHHHHhcCC--CCCeeecc
Confidence 4579999999988542 223322221 24699999999999852221 111111 344554543 56777777
Q ss_pred CCCCCHHHHHHHHHHhhh
Q 031293 141 KSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 141 ~~~~g~~~l~~~i~~~~~ 158 (162)
+.... .+++.+|...+.
T Consensus 567 ~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQ 583 (625)
T ss_pred CCCCC-chHHHHHHHhhh
Confidence 74222 788888876554
No 437
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=91.30 E-value=2.1 Score=30.07 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=33.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH------HhCCceEEEEe
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME------RSQTKYQVVLT 104 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~------~~~~~~ivv~n 104 (162)
..+.++||||.. .......+. .+|.++..+.++..-.......+..+. ..+.|..+++|
T Consensus 84 yD~iiID~pp~~------------~~~~~~al~---~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~ 148 (231)
T PRK13849 84 FDYALADTHGGS------------SELNNTIIA---SSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQ 148 (231)
T ss_pred CCEEEEeCCCCc------------cHHHHHHHH---HCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 469999999872 222333332 348888776654311111112222221 12567789999
Q ss_pred ccC
Q 031293 105 KTD 107 (162)
Q Consensus 105 K~D 107 (162)
.++
T Consensus 149 ~~~ 151 (231)
T PRK13849 149 RVP 151 (231)
T ss_pred ecc
Confidence 986
No 438
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=91.16 E-value=1.3 Score=31.13 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=46.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH------HhCCceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME------RSQTKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~------~~~~~~ivv~nK 105 (162)
.|.++||+|. ...+..+.-. .+|.++.-.-.+..=.....+.+.++. ...+|.-+++|+
T Consensus 85 d~VlvDleG~-------------as~~~~~aia--~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr 149 (231)
T PF07015_consen 85 DFVLVDLEGG-------------ASELNDYAIA--RSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTR 149 (231)
T ss_pred CEEEEeCCCC-------------CchhHHHHHH--HCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEec
Confidence 5899999998 3333343322 247777654333210001111222222 235899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
+.-...... ...+.+.+.. .|++.+.-.......+
T Consensus 150 ~~~~~~~~~---~~~~~e~~~~-----lpvl~t~l~eR~Af~~ 184 (231)
T PF07015_consen 150 VPAARLTRA---QRIISEQLES-----LPVLDTELHERDAFRA 184 (231)
T ss_pred CCcchhhHH---HHHHHHHHhc-----CCccccccccHHHHHH
Confidence 874312111 1233333331 4666666555443333
No 439
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.10 E-value=7.4 Score=30.12 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=36.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCc-eEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTK-YQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~-~ivv~nK~Dl 108 (162)
....++||+|.... . ......+... .......-.++|+++.... ..+.+.+..+ ..+ -=+++||.|.
T Consensus 270 ~d~VLIDTaGrsqr---d---~~~~~~l~~l-~~~~~~~~~~LVl~at~~~----~~~~~~~~~f~~~~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMSQR---D---QMLAEQIAML-SQCGTQVKHLLLLNATSSG----DTLDEVISAYQGHGIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCCcc---h---HHHHHHHHHH-hccCCCceEEEEEcCCCCH----HHHHHHHHHhcCCCCCEEEEEeeeC
Confidence 35899999987221 1 1112223333 2222235677888887432 1222333332 234 3677899998
Q ss_pred CCc
Q 031293 109 VFP 111 (162)
Q Consensus 109 ~~~ 111 (162)
...
T Consensus 339 t~~ 341 (420)
T PRK14721 339 AAS 341 (420)
T ss_pred CCC
Confidence 643
No 440
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=90.07 E-value=5.3 Score=28.47 Aligned_cols=78 Identities=9% Similarity=-0.005 Sum_probs=41.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
...+.++|||..|....-....+.+.. +...+. ....+.+++|..+...........+..+...++++ -+|+|+..-
T Consensus 124 ~yD~VVvDtpPtg~tlrlL~lp~~l~~-~~~~l~-d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~ 201 (254)
T cd00550 124 EYDVVVFDTAPTGHTLRLLSLPTVLSW-AREILS-DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP 201 (254)
T ss_pred CCCEEEECCCCcHHHHHHHHhHHHHHH-HHHHhc-CCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence 456999999866332000000000000 111222 12235677887776543334455677888888885 889999875
Q ss_pred C
Q 031293 109 V 109 (162)
Q Consensus 109 ~ 109 (162)
.
T Consensus 202 ~ 202 (254)
T cd00550 202 E 202 (254)
T ss_pred c
Confidence 3
No 441
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.61 E-value=2.8 Score=29.36 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=34.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HH-HHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LI-SLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~-~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++|||+. . .......+. .+|.+++++.+... ...... .+ +.+... ..++-+|+|+.|
T Consensus 116 D~viiD~pp~-~-----------~~~~~~~l~---~ad~vii~~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~ 179 (246)
T TIGR03371 116 DWVLIDVPRG-P-----------SPITRQALA---AADLVLVVVNADAA-CYATLHQQALALFAGSGPRIGPHFLINQFD 179 (246)
T ss_pred CEEEEECCCC-c-----------hHHHHHHHH---hCCeEEEEeCCCHH-HHHHHHHHHHHHhhcccccccceEEeeccC
Confidence 5999999973 0 333444433 34899999877531 111111 12 222211 345778999998
Q ss_pred CC
Q 031293 108 TV 109 (162)
Q Consensus 108 l~ 109 (162)
.-
T Consensus 180 ~~ 181 (246)
T TIGR03371 180 PA 181 (246)
T ss_pred cc
Confidence 54
No 442
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=89.59 E-value=0.93 Score=32.40 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=33.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH----hCCc-eEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER----SQTK-YQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~----~~~~-~ivv~n 104 (162)
+..+.++||||.-.. ..+.. ....+|.+++++.+...--.....+++.+.. .+.+ .-+|+|
T Consensus 115 ~yD~vIIDt~g~~~~-----------~~~~~---al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~N 180 (267)
T cd02032 115 EYDVILFDVLGDVVC-----------GGFAA---PLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIAN 180 (267)
T ss_pred cCCEEEEeCCCCccc-----------ccchh---hhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence 346899999875110 00111 1334589998887753211122223333322 2444 347889
Q ss_pred ccCC
Q 031293 105 KTDT 108 (162)
Q Consensus 105 K~Dl 108 (162)
+.|.
T Consensus 181 r~~~ 184 (267)
T cd02032 181 RTDK 184 (267)
T ss_pred CCCH
Confidence 9883
No 443
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.40 E-value=5.6 Score=28.31 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=35.4
Q ss_pred CceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccC
Q 031293 31 TKLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
..+.++||| |. ..+.+..+.. +|.++.|+.+... ....+... ....-+|+|+.|
T Consensus 118 ~~~iliD~P~g~-------------~~~~~~al~~---aD~vL~V~~~Da~-------s~~~L~q~~l~~~~~~liNq~~ 174 (243)
T PF06564_consen 118 YDWILIDTPPGP-------------SPYTRQALAA---ADLVLVVVNPDAA-------SHARLHQRALPAGHRFLINQYD 174 (243)
T ss_pred CCEEEEeCCCCC-------------cHHHHHHHHh---CCeEEEEeCCCHH-------HHHHHHHhcccCCcEEEEeccC
Confidence 359999998 55 4455555543 3899998877531 12222222 223688999999
Q ss_pred CCC
Q 031293 108 TVF 110 (162)
Q Consensus 108 l~~ 110 (162)
-.+
T Consensus 175 ~~s 177 (243)
T PF06564_consen 175 PAS 177 (243)
T ss_pred ccc
Confidence 753
No 444
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.79 E-value=1.4 Score=36.51 Aligned_cols=64 Identities=13% Similarity=-0.061 Sum_probs=36.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
..+.++|||+.... .-...+ ...+|.+++++...........+.++.+...+.+ .-+|+|+.|.
T Consensus 656 yD~IiID~pp~~~~------------~d~~~l--~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 656 SDCVVVDVGTADPV------------RDMRAA--ARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred CCEEEEcCCCcchh------------HHHHHh--hhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 46899999876210 011111 1234888888775433223334455666655655 4689999884
No 445
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=88.25 E-value=0.78 Score=30.74 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH-HHHhCCceEEEEeccCCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-MERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~-l~~~~~~~ivv~nK~Dl~~ 110 (162)
.+.++-+.|..... .. . +....+...-..+.++.|+|+.... . ....... ......-=++++||+|+++
T Consensus 86 d~IiIE~sG~a~p~---~l--~---~~~~~~~~~~~~~~iI~vVDa~~~~-~-~~~~~~~~~~Qi~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 86 DRIIIETSGLADPA---PL--I---LQDPPLKEDFRLDSIITVVDATNFD-E-LENIPELLREQIAFADVIVLNKIDLVS 155 (178)
T ss_dssp SEEEEEEECSSGGG---GH--H---HHSHHHHHHESESEEEEEEEGTTHG-G-HTTHCHHHHHHHCT-SEEEEE-GGGHH
T ss_pred CEEEECCccccccc---hh--h---hccccccccccccceeEEecccccc-c-cccchhhhhhcchhcCEEEEeccccCC
Confidence 47888899874331 11 0 0122222233458899999996421 0 1111111 1222333478889999986
Q ss_pred cH
Q 031293 111 PI 112 (162)
Q Consensus 111 ~~ 112 (162)
..
T Consensus 156 ~~ 157 (178)
T PF02492_consen 156 DE 157 (178)
T ss_dssp HH
T ss_pred hh
Confidence 55
No 446
>PRK10818 cell division inhibitor MinD; Provisional
Probab=87.98 E-value=2.9 Score=29.89 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh---------CCceE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS---------QTKYQ 100 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~---------~~~~i 100 (162)
...+.++|+|+.- .......+ ..+|.+++++++...--.....+++.+... ..+..
T Consensus 113 ~yd~viiD~p~~~------------~~~~~~~l---~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~ 177 (270)
T PRK10818 113 DFEFIVCDSPAGI------------ETGALMAL---YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH 177 (270)
T ss_pred CCCEEEEeCCCCc------------cHHHHHHH---HhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceE
Confidence 3569999997541 12222222 335999999888743222223344443311 13357
Q ss_pred EEEeccCC
Q 031293 101 VVLTKTDT 108 (162)
Q Consensus 101 vv~nK~Dl 108 (162)
+++|+.|.
T Consensus 178 vv~n~~~~ 185 (270)
T PRK10818 178 LLLTRYNP 185 (270)
T ss_pred EEEeccCH
Confidence 88899884
No 447
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=87.65 E-value=0.63 Score=28.67 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=14.3
Q ss_pred EEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 102 VLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 102 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
++||+|+.... +.++.+.+... . .+++++||.
T Consensus 1 AaNK~D~~~a~---~ni~kl~~~~~---~--~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAAD---ENIEKLKEKYP---D--EPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-H---HHHHHHHHHHT---T---EEEEE-HH
T ss_pred CCccccccccH---hHHHHHHHhCC---C--CceeeccHH
Confidence 58999974322 22334433221 1 377788764
No 448
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.63 E-value=12 Score=29.52 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=33.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.++||+|.... .. .....+ ..+.......-.++++|+..+... -.+..+.....+ .--+++||.|...
T Consensus 335 ~d~VLIDTaGr~~~---d~---~~~e~~-~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~-~~g~IlTKlDet~ 405 (484)
T PRK06995 335 KHIVLIDTIGMSQR---DR---MVSEQI-AMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPG-LAGCILTKLDEAA 405 (484)
T ss_pred CCeEEeCCCCcChh---hH---HHHHHH-HHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCC-CCEEEEeCCCCcc
Confidence 35899999996321 10 011111 122222112336888888653211 111222222222 2456789999763
No 449
>PRK11519 tyrosine kinase; Provisional
Probab=86.42 E-value=2.1 Score=35.36 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=22.6
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
+|.+++|+.........-...++.+...+.++ -+|+|+++.
T Consensus 659 ~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 659 VGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 47777777654322222233345555556664 477787753
No 450
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=85.69 E-value=2.9 Score=31.51 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=45.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC---CceEEEEeccCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ---TKYQVVLTKTDT 108 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~---~~~ivv~nK~Dl 108 (162)
.+.++|.| +.. ......++.+ +|.+++|++.+-+--....++++.+++.. .+...++||.+.
T Consensus 219 ~~vV~Dlp-~~~-----------~~~t~~vL~~---Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~ 283 (366)
T COG4963 219 DFVVVDLP-NIW-----------TDWTRQVLSG---SDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGV 283 (366)
T ss_pred CeEEEcCC-Ccc-----------chHHHHHHhc---CCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCC
Confidence 58999999 522 3445555544 38999998876544455667777777653 568999999987
Q ss_pred CCcH
Q 031293 109 VFPI 112 (162)
Q Consensus 109 ~~~~ 112 (162)
....
T Consensus 284 ~~~~ 287 (366)
T COG4963 284 PKRP 287 (366)
T ss_pred CCCC
Confidence 5433
No 451
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=85.47 E-value=2.7 Score=28.93 Aligned_cols=67 Identities=6% Similarity=0.073 Sum_probs=34.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCc-eEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTK-YQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~-~ivv~n 104 (162)
...+.++||||.... ..+. ..+. ...+|.++.++.+...-......+++.++.. +.+ ..++.|
T Consensus 116 ~yD~ilID~~g~~~~----------~~~~-~~l~-~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N 183 (212)
T cd02117 116 DLDVVLYDVLGDVVC----------GGFA-MPIR-EGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICN 183 (212)
T ss_pred CCCEEEEecCCCcee----------cccc-cccc-cccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEe
Confidence 456999999875210 0110 0000 1246888888876532111112334444443 333 458999
Q ss_pred ccCC
Q 031293 105 KTDT 108 (162)
Q Consensus 105 K~Dl 108 (162)
|.+.
T Consensus 184 ~~~~ 187 (212)
T cd02117 184 SRNT 187 (212)
T ss_pred CCCC
Confidence 9985
No 452
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=84.90 E-value=7.8 Score=30.15 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=39.8
Q ss_pred ceeEEEeecCCC------CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 69 KRVCLLIDTKWG------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 69 ~~vi~vid~~~~------~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
-++++-.|++-+ ......+..+.|++.++|+++++|-.+=-++ +..+..+.+. ..++ +++++++|.+
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~-et~~L~~eL~---ekY~---vpVlpvnc~~ 219 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSE-ETQELAEELE---EKYD---VPVLPVNCEQ 219 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCH-HHHHHHHHHH---HHhC---CcEEEeehHH
Confidence 455666665432 2223344567888889999999998874432 2222222222 2333 5999998755
No 453
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=84.65 E-value=11 Score=27.16 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=35.2
Q ss_pred ceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce---EEEEeccC
Q 031293 32 KLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY---QVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~---ivv~nK~D 107 (162)
.+.++||| |.+ ...+...+ .+|.+++|......--.......+++...+.+. .+|+|+.+
T Consensus 114 D~iliD~~aGl~------------~~~~~~~~----~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 114 DYILIDTGAGLS------------RDTLSFIL----SSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred CEEEEeCCCCcc------------HHHHHHHH----hcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 58999997 562 12222222 237777776655332222334456666666553 38999998
Q ss_pred C
Q 031293 108 T 108 (162)
Q Consensus 108 l 108 (162)
-
T Consensus 178 ~ 178 (262)
T COG0455 178 S 178 (262)
T ss_pred c
Confidence 3
No 454
>PRK11670 antiporter inner membrane protein; Provisional
Probab=84.28 E-value=2.9 Score=31.69 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=35.5
Q ss_pred CceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 31 TKLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
..+.++||| |.|+. ... +.....+|.+++|..+............+++...+.|+ -+|.|+.+.
T Consensus 216 yDyvIID~PPg~gd~-----------~l~---~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 216 LDYLVLDMPPGTGDI-----------QLT---LAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred CCEEEEeCCCCCchH-----------HHH---HhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 468999996 66321 111 11112348888877664322112233345555557775 588899875
Q ss_pred C
Q 031293 109 V 109 (162)
Q Consensus 109 ~ 109 (162)
.
T Consensus 282 ~ 282 (369)
T PRK11670 282 I 282 (369)
T ss_pred c
Confidence 4
No 455
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=83.96 E-value=2.2 Score=30.78 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.5
Q ss_pred CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 131 LVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
...|+++.||.++.|++.|++.|...++
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 3479999999999999999999987664
No 456
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=83.86 E-value=0.55 Score=33.18 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=41.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC--CCccHHHH---HHHHHHhCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG--VKPRDHEL---ISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~--~~~~~~~~---~~~l~~~~~~~ivv~nK~ 106 (162)
.+.+.|+||+-+...... .....++. +++..-.-+++-++|+.-- ....-..+ +..+-....|.+=|+.|+
T Consensus 98 ~Y~lFDcPGQVELft~h~---~l~~I~~~-Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHD---SLNKIFRK-LEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred cEEEEeCCCcEEEEeccc---hHHHHHHH-HHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHh
Confidence 599999999855432211 11222222 2223333566777887421 11111111 223334578999999999
Q ss_pred CCCCcHH
Q 031293 107 DTVFPID 113 (162)
Q Consensus 107 Dl~~~~~ 113 (162)
|+..+..
T Consensus 174 Dl~~~yg 180 (290)
T KOG1533|consen 174 DLLKKYG 180 (290)
T ss_pred HHHHhhc
Confidence 9975443
No 457
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=83.64 E-value=3.3 Score=29.68 Aligned_cols=24 Identities=0% Similarity=0.117 Sum_probs=12.0
Q ss_pred ceEEEEeccCCCCcHHHHHHHHHH
Q 031293 98 KYQVVLTKTDTVFPIDVARRAMQI 121 (162)
Q Consensus 98 ~~ivv~nK~Dl~~~~~~~~~~~~~ 121 (162)
..++++.+.+........+..+.+
T Consensus 237 d~vilV~~~~~t~~~~~~~~~~~l 260 (274)
T TIGR03029 237 RGTLIVSRVNETRLHELTSLKEHL 260 (274)
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH
Confidence 344455566665555554444333
No 458
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=83.33 E-value=7.2 Score=28.93 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=37.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHH-HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELV-KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
...++.|.|.... .+. ...+. ...+...-..+.++.|+|+.......+... ........-=++++||+|+.+
T Consensus 92 d~IvIEttG~a~p---~~i---~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 92 DRLVIECTGMADP---GPI---IQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADRILLTKTDVAG 164 (318)
T ss_pred CEEEEECCCccCH---HHH---HHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCEEEEeccccCC
Confidence 4678889888432 111 11111 122333345689999999975322111100 111111223478889999986
Q ss_pred c
Q 031293 111 P 111 (162)
Q Consensus 111 ~ 111 (162)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
No 459
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.46 E-value=9.1 Score=27.58 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=26.0
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF 110 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~ 110 (162)
+.+++|...............+++...+.|+ =+|.|+.+...
T Consensus 191 ~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 191 DGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred CeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcc
Confidence 5677776655433333344556777777774 67778777654
No 460
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=82.33 E-value=13 Score=28.40 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=20.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
..+.++|||..- ..+....+.. +|.++..+.+.
T Consensus 235 YD~IiIDtpP~l------------~~~t~nal~A---aD~viiP~~~~ 267 (388)
T PRK13705 235 YDVIVIDSAPNL------------GIGTINVVCA---ADVLIVPTPAE 267 (388)
T ss_pred CCEEEEECCCch------------hHHHHHHHHH---cCEEEEecCCc
Confidence 468999998540 3334444443 38888877664
No 461
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=82.27 E-value=5.5 Score=29.47 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=43.9
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEeecCCCCCccH----HHHH-HHHHHhCCceEEEEecc
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLIDTKWGVKPRD----HELI-SLMERSQTKYQVVLTKT 106 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid~~~~~~~~~----~~~~-~~l~~~~~~~ivv~nK~ 106 (162)
..++.|.|.-.. -+.. .-+ ..+.+...-..|+++-|+|+.......+ .-+. +........=-+++||.
T Consensus 148 ~IllETTGlAnP---aPia---~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD~II~NKt 221 (391)
T KOG2743|consen 148 HILLETTGLANP---APIA---SMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALADRIIMNKT 221 (391)
T ss_pred eEEEeccCCCCc---HHHH---HHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhheeeeccc
Confidence 667888887221 1111 111 3334444445699999999964210000 0000 11110111124677999
Q ss_pred CCCCcHHHHHHHHHHHH
Q 031293 107 DTVFPIDVARRAMQIEE 123 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~ 123 (162)
|++++.+..+..+.+++
T Consensus 222 Dli~~e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 222 DLVSEEEVKKLRQRIRS 238 (391)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99998887766666654
No 462
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=82.07 E-value=3.3 Score=30.60 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=34.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
..+.++|+|+.. .......+ ..+|.+++++++...-......+++.+...+..+-+|+|...
T Consensus 205 ~D~VIID~p~~~------------~~~~~~~L---~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~ 266 (322)
T TIGR03815 205 GDLVVVDLPRRL------------TPAAETAL---ESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPA 266 (322)
T ss_pred CCEEEEeCCCCC------------CHHHHHHH---HHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Confidence 368999999762 11222332 234899999876542222223345555544444555667643
No 463
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=81.44 E-value=14 Score=29.41 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293 87 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 87 ~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~ 158 (162)
.+.+.++..++|+++++|+.-.-.+.+++ .+++.+...+. +...+. +.-|+|-.+|-+.+.+.++
T Consensus 347 ~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~----~v~~~~~~~g~---~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 347 KHIENIKKFGVPVVVAINKFSTDTDAELA----LVRKLAEEAGA---FVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHcCCCeEEEecCCCCCCHHHHH----HHHHHHHHcCC---CEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 34566777899999999999765555554 44555554443 444333 3457888888777776554
No 464
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.35 E-value=3.9 Score=33.90 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=20.3
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
+|.+++|+.........-...++.+...+.++ -+|+|+++.
T Consensus 664 ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 664 VGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 36666665543222122233344555455553 467777763
No 465
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.76 E-value=3.3 Score=30.17 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=31.7
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCc-eEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTK-YQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~-~ivv~nK 105 (162)
..+.++||||.-.. .. +. .....+|.+++++++...--.....+++.++.. +.+ .-+++|+
T Consensus 116 yD~IiIDt~~~l~~----------~a-~~---aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~ 181 (290)
T CHL00072 116 YDIILFDVLGDVVC----------GG-FA---APLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNR 181 (290)
T ss_pred CCEEEEecCCccee----------ch-hh---hhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeC
Confidence 45889999865110 11 11 112345888888776532111112233333322 233 3588899
Q ss_pred cC
Q 031293 106 TD 107 (162)
Q Consensus 106 ~D 107 (162)
.+
T Consensus 182 ~~ 183 (290)
T CHL00072 182 TS 183 (290)
T ss_pred CC
Confidence 87
No 466
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=80.47 E-value=16 Score=29.38 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~ 158 (162)
+++.++.+++|+++++|+...-.+.+++ .+++.+...+. +...+. +.-|+|-.+|-+.+.+.++
T Consensus 393 Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~----~l~~~~~~~g~---~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 393 HIGTVKKSGINPVVCINAFYTDTHAEIA----IVRRLAEQAGA---RVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHcCCCeEEEeCCCCCCCHHHHH----HHHHHHHHcCC---CEEEechhhccchhHHHHHHHHHHHhh
Confidence 4556667799999999999765555554 44444544443 444333 3457777787777766544
No 467
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=79.76 E-value=3.3 Score=29.60 Aligned_cols=64 Identities=6% Similarity=0.073 Sum_probs=32.1
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH----HhCCce-EEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME----RSQTKY-QVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~----~~~~~~-ivv~n 104 (162)
+..+.++||||.... . .+.. ....+|.+++++.+...-......+++.+. ..++++ -++.|
T Consensus 117 ~yD~viIDt~g~~~~----------~-~~~~---~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N 182 (270)
T PRK13185 117 DYDVILFDVLGDVVC----------G-GFAA---PLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIAN 182 (270)
T ss_pred cCCEEEEecCCCccc----------C-cccc---hhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEe
Confidence 346899999875211 0 0111 123458888887664321111112233332 224554 47889
Q ss_pred ccC
Q 031293 105 KTD 107 (162)
Q Consensus 105 K~D 107 (162)
+.+
T Consensus 183 ~~~ 185 (270)
T PRK13185 183 RSA 185 (270)
T ss_pred ccC
Confidence 976
No 468
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=79.24 E-value=17 Score=27.78 Aligned_cols=82 Identities=9% Similarity=0.013 Sum_probs=39.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH-------HHh--CCceE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM-------ERS--QTKYQ 100 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l-------~~~--~~~~i 100 (162)
...+.++|||+.- ......++.. +|.++..+.+...-.....+++..+ ... +..+-
T Consensus 234 ~YD~IlID~pPsl------------g~lt~nAL~A---Ad~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~ 298 (387)
T PHA02519 234 NYDIIVIDSAPNL------------GTGTINVVCA---ADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVR 298 (387)
T ss_pred cCCEEEEECCCCc------------cHHHHHHHHH---hCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeE
Confidence 3468999998650 2334444433 3787777765421000011122222 111 22355
Q ss_pred EEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293 101 VVLTKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 101 vv~nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
+++|+.|.-.........+.+++.++
T Consensus 299 il~t~~~~~~~~~~~~i~~~l~~~~g 324 (387)
T PHA02519 299 LLLTKYSLTVGNQSRWMEEQIRNTWG 324 (387)
T ss_pred EEEeeECCCCchHHHHHHHHHHHHhc
Confidence 78899996532333334455555543
No 469
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=78.83 E-value=3.4 Score=32.70 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=38.7
Q ss_pred eEEEEeccCCCCcHHHHHHHHHHHHHHHh--------cCCC----CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 99 YQVVLTKTDTVFPIDVARRAMQIEESLKA--------NNSL----VQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 99 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~----~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+++..||.|+..........+.+...... .+.. +.....+|+++|.|+++|...+.....
T Consensus 140 ~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d 211 (572)
T KOG1249|consen 140 LFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD 211 (572)
T ss_pred eEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee
Confidence 79999999998554433333444433221 1111 235667899999999999988876543
No 470
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=78.18 E-value=3.8 Score=29.78 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=33.1
Q ss_pred ceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEecc
Q 031293 32 KLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKT 106 (162)
Q Consensus 32 ~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~ 106 (162)
.+.++||| |.++. +-.+-+++... +++++|-.+.+-.......-..+.+..++|++ +|-|..
T Consensus 158 DyLviDtPPGtsDe----------hls~~~~~~~~---~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs 221 (300)
T KOG3022|consen 158 DYLVIDTPPGTSDE----------HLSLVQFLRES---DGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMS 221 (300)
T ss_pred CEEEEeCCCCCChh----------hhheeeccccc---CceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccc
Confidence 58999996 88553 22233333322 67777754443211112223456777788864 444544
No 471
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=77.82 E-value=4.3 Score=29.22 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 131 LVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
...|+++.||.++.|+..|++.|...++
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHCC
Confidence 3479999999999999999999988764
No 472
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=77.55 E-value=15 Score=29.51 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~ 158 (162)
+++.++..++|+++++|+.-.-.+.+++ .+++.+..... .+...+. +.-|+|-.+|-+.+.+.++
T Consensus 385 Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~----~~~~~~~~~~~--~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 385 HINNVAQYGLPVVVAINRFPTDTDEELE----WLKEAVLLTGA--FGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHcCCCeEEEecCCCCCCHHHHH----HHHHHHHHcCC--CcEEEechhhccchhHHHHHHHHHHHhh
Confidence 4556667799999999998765555554 34444443111 2444443 3457888888777766554
No 473
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.05 E-value=9.9 Score=30.02 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=40.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHhCCc--e-EEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERSQTK--Y-QVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~~~~--~-ivv~n 104 (162)
+..+.++||+|---.. ......+... ......|.+++|-.|--+-...+ ..+-+.+.....| + -++++
T Consensus 466 gfDVvLiDTAGR~~~~------~~lm~~l~k~-~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNN------APLMTSLAKL-IKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred CCCEEEEeccccccCC------hhHHHHHHHH-HhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEE
Confidence 3469999999962111 1112223333 23445699999976644321111 1222334333333 2 57789
Q ss_pred ccCCCCcH
Q 031293 105 KTDTVFPI 112 (162)
Q Consensus 105 K~Dl~~~~ 112 (162)
|.|.+++.
T Consensus 539 k~dtv~d~ 546 (587)
T KOG0781|consen 539 KFDTVDDK 546 (587)
T ss_pred eccchhhH
Confidence 99998644
No 474
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=75.83 E-value=8 Score=29.34 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=26.2
Q ss_pred hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
+.+|+++++|+.|.--. .-....+.+.+.+...+ .+++++||.-
T Consensus 198 t~KP~i~v~N~~e~~~~-~~~~~~~~i~~~~~~~~---~~~i~~sa~~ 241 (364)
T PRK09601 198 TAKPVLYVANVDEDDLA-DGNPYVKKVREIAAKEG---AEVVVICAKI 241 (364)
T ss_pred ccCCeEEEEECCccccc-cccHHHHHHHHHHHHcC---CeEEEEEHHH
Confidence 35899999999985100 11223344444444433 3789999743
No 475
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=75.66 E-value=6 Score=28.25 Aligned_cols=65 Identities=6% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH----hCCc-eEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER----SQTK-YQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~----~~~~-~ivv~n 104 (162)
+..+.++||||.... .. +.. ....+|.+++++.+...-......+++.+.. .+++ .-+|+|
T Consensus 115 ~yD~ViID~~~~~~~----------~~-~~~---~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N 180 (268)
T TIGR01281 115 DYDVILFDVLGDVVC----------GG-FAT---PLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGN 180 (268)
T ss_pred cCCEEEEecCCcccc----------Cc-ccc---chhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEe
Confidence 356999999875211 00 111 1234588888876542211111223333332 2344 357889
Q ss_pred ccCC
Q 031293 105 KTDT 108 (162)
Q Consensus 105 K~Dl 108 (162)
+.+.
T Consensus 181 ~~~~ 184 (268)
T TIGR01281 181 RSDA 184 (268)
T ss_pred CCCh
Confidence 9874
No 476
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=75.15 E-value=9.5 Score=26.35 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=20.3
Q ss_pred eeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 70 RVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 70 ~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
-+++|.++.-+-........+.++..+.++ -+++|+.+-
T Consensus 135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 456666654331111122334455556664 678899875
No 477
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=73.50 E-value=11 Score=22.38 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=20.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
..+.++|+|+... ......+ ..+|.+++++++..
T Consensus 40 ~d~viiD~p~~~~------------~~~~~~l---~~ad~viv~~~~~~ 73 (104)
T cd02042 40 YDYIIIDTPPSLG------------LLTRNAL---AAADLVLIPVQPSP 73 (104)
T ss_pred CCEEEEeCcCCCC------------HHHHHHH---HHCCEEEEeccCCH
Confidence 4588999987621 1122222 23488888887753
No 478
>PLN02759 Formate--tetrahydrofolate ligase
Probab=72.41 E-value=24 Score=28.73 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293 87 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 87 ~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~ 158 (162)
.+.+.++..++|++|++|+...-.+.+++ .+++.+.+.+. .+...+. +.-|+|-.+|-+.+.+.++
T Consensus 441 ~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~----~v~~~~~~~ga--~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 441 RHIENTKSYGVNVVVAINMFATDTEAELE----AVRQAALAAGA--FDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHHHcCCCeEEEecCCCCCCHHHHH----HHHHHHHHcCC--CcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 35566677899999999999766555554 44444444431 2444443 3457777887777766554
No 479
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=71.25 E-value=38 Score=26.14 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
...+.++|||+.- .......+.. +|.+++.+.+.
T Consensus 251 ~yD~IiIDtpP~l------------~~~t~~al~a---Ad~viiPv~p~ 284 (405)
T PRK13869 251 DYDVVVIDCPPQL------------GFLTLSGLCA---ATSMVITVHPQ 284 (405)
T ss_pred cCCEEEEECCCch------------hHHHHHHHHH---cCEEEEecCCc
Confidence 3468999998651 2233333333 48888887664
No 480
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=70.27 E-value=32 Score=27.12 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEe--ecCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV--SSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+.++..++|+++++||.-.-.+.++ +.+++.+.+.+. ++... =++-|+|-.+|-.++.+.++
T Consensus 361 Hi~Nikkfgvp~VVAIN~F~tDt~~Ei----~~i~~~~~~~gv---~~~ls~vwakGg~Gg~eLA~kVv~~~~ 426 (554)
T COG2759 361 HIENIKKFGVPVVVAINKFPTDTEAEI----AAIEKLCEEHGV---EVALSEVWAKGGEGGIELAKKVVEAIE 426 (554)
T ss_pred HHHHHHHcCCCeEEEeccCCCCCHHHH----HHHHHHHHHcCC---ceeehhhhhccCccHHHHHHHHHHHHh
Confidence 344566678999999999865444444 345555665553 33332 25667888888777776654
No 481
>PRK10037 cell division protein; Provisional
Probab=69.64 E-value=37 Score=24.01 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~~ivv~nK~D 107 (162)
+..+.++|||+.- .......+. .+|.+++++.+.. ...++..... +..+.+++|+.+
T Consensus 117 ~yD~iiIDtpp~~------------~~~~~~al~---aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 117 RYQWILLDLPRGA------------SPLTRQLLS---LCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDLR 174 (250)
T ss_pred CCCEEEEECCCCc------------cHHHHHHHH---hCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecCC
Confidence 4569999998751 223333333 3599999887642 1223333222 234667789886
No 482
>COG2403 Predicted GTPase [General function prediction only]
Probab=67.13 E-value=9 Score=29.20 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=29.6
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce--EEEEeccCCCCcHHHHHHHHHHH
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY--QVVLTKTDTVFPIDVARRAMQIE 122 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~--ivv~nK~Dl~~~~~~~~~~~~~~ 122 (162)
|..+.+.|+..+. .++..+..+.++.+ ++++||+|......+.++...++
T Consensus 243 d~~Ivvvda~rpg----~ei~~~pGe~~irlAD~VIItkveea~~~kvrkI~~~I~ 294 (449)
T COG2403 243 DLHIVVVDALRPG----EEIGSFPGELRIRLADLVIITKVEEAMAEKVRKIVRNIE 294 (449)
T ss_pred CeeEEEecCCCCc----hhhccCCCceeeeeccEEEEecccccchHHHHHHHHHHH
Confidence 5556666665432 23334444445553 88899999887665555544443
No 483
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=66.93 E-value=9.5 Score=30.51 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~ 157 (162)
+.+.++.+++|++|++|+.-.-.++++ +.+++.+.+.+. ++..+. +.-|+|-.+|-+.+.+.+
T Consensus 363 HIeNik~fGvpvVVAIN~F~tDT~aEi----~~I~~~~~~~Gv---~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 363 HIENIKKFGVPVVVAINRFPTDTDAEI----ELIRELCEELGV---RAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHCTT--EEEEEE--TTS-HHHH----HHHHHHCCCCCE---EEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHhcCCCeEEEecCCCCCCHHHH----HHHHHHHHhCCC---CEEEechhhcccccHHHHHHHHHHHh
Confidence 445566678999999999865444444 455555555543 433322 344788888888777766
No 484
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=64.77 E-value=29 Score=21.12 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCC
Q 031293 55 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDT 108 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl 108 (162)
......-+...+.||+++..++....-.....+ +-+....++|++++.+....
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 334455556667789999999875411111112 23445578999999776653
No 485
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=64.41 E-value=46 Score=27.12 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH-hcCCCCCCeEEee--cCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK-ANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~~ 158 (162)
+.+.++..++|+++++|+.-.-.+.+++ .+++.+. ..+. .+...+. +.-|+|-.+|-+.+.+.++
T Consensus 429 Hien~~~fgvpvVVAIN~F~tDT~~Ei~----~i~~~~~~~~ga--~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~ 496 (625)
T PTZ00386 429 HIQNIRKFGVPVVVALNKFSTDTDAELE----LVKELALQEGGA--ADVVVTDHWAKGGAGAVDLAQALIRVTE 496 (625)
T ss_pred HHHHHHHcCCCeEEEecCCCCCCHHHHH----HHHHHHHHhcCC--ccEEEechhhccchhHHHHHHHHHHHHh
Confidence 4556677899999999998765555554 3444444 3331 2444433 3457888888877766553
No 486
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=64.26 E-value=24 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=11.9
Q ss_pred HHHHHHHhCCceEEEEec
Q 031293 88 LISLMERSQTKYQVVLTK 105 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK 105 (162)
..+.+...+.|+++|.+.
T Consensus 121 ~~dl~~~~~~~vilV~~~ 138 (166)
T TIGR00347 121 TADLIKLLQLPVILVVRV 138 (166)
T ss_pred HHHHHHHhCCCEEEEECC
Confidence 345566668888877644
No 487
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=62.20 E-value=62 Score=24.69 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=20.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
...+.++|||+.- .......+. .+|.+++.+.+.
T Consensus 234 ~yD~IiiD~pp~~------------~~~~~~al~---aad~viipv~p~ 267 (387)
T TIGR03453 234 DYDVVVIDCPPQL------------GFLTLSALC---AATGVLITVHPQ 267 (387)
T ss_pred cCCEEEEeCCccH------------hHHHHHHHH---HcCeeEEcCCCc
Confidence 3468999999761 222333333 348888887664
No 488
>PRK13695 putative NTPase; Provisional
Probab=61.56 E-value=44 Score=22.04 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=23.9
Q ss_pred ccceeEEEee---cCCCCCccHHHHHHHHHHhCCceEEEEecc
Q 031293 67 SLKRVCLLID---TKWGVKPRDHELISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 67 ~~~~vi~vid---~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~ 106 (162)
.+++ +++| +.+.......+.+..+.+.+.|++++.||.
T Consensus 96 ~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 96 EADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 4455 5667 444444444455555546688999999985
No 489
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=60.77 E-value=49 Score=22.31 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=30.1
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
++.+++.+|+-.+.......+...+....+|++..++
T Consensus 30 ~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~ 66 (178)
T cd07021 30 ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVN 66 (178)
T ss_pred CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6788888898877766677788888888899888887
No 490
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=59.77 E-value=49 Score=23.47 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=9.6
Q ss_pred CCceEEEcCCCC
Q 031293 30 GTKLCLVDLPGY 41 (162)
Q Consensus 30 ~~~~~ivDtpG~ 41 (162)
+..+.++||||.
T Consensus 116 ~yD~viID~~g~ 127 (270)
T cd02040 116 DLDFVIYDVLGD 127 (270)
T ss_pred CCCEEEEecccC
Confidence 456999999875
No 491
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=59.76 E-value=39 Score=22.70 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=26.2
Q ss_pred ccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
+++.+++-+|+-.+.......+.+.+.....|++.+++
T Consensus 29 ~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~ 66 (172)
T cd07015 29 NAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVY 66 (172)
T ss_pred CCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEe
Confidence 45777777887666655556677777766778776665
No 492
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=55.21 E-value=23 Score=21.34 Aligned_cols=14 Identities=7% Similarity=-0.247 Sum_probs=11.3
Q ss_pred CCceEEEEeccCCC
Q 031293 96 QTKYQVVLTKTDTV 109 (162)
Q Consensus 96 ~~~~ivv~nK~Dl~ 109 (162)
+.|.+++.||.|+.
T Consensus 77 dl~~~~~~nk~dl~ 90 (124)
T smart00010 77 DLPILVGGNRDVLE 90 (124)
T ss_pred CCcEEEEeechhhH
Confidence 46788899999974
No 493
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=54.67 E-value=52 Score=23.38 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.6
Q ss_pred CCceEEEcCCCC
Q 031293 30 GTKLCLVDLPGY 41 (162)
Q Consensus 30 ~~~~~ivDtpG~ 41 (162)
+..+.++||||.
T Consensus 113 ~yD~ViIDt~~~ 124 (264)
T PRK13231 113 DIDVVIYDVLGD 124 (264)
T ss_pred CCCEEEEecCCC
Confidence 346899999875
No 494
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.39 E-value=49 Score=27.21 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=40.4
Q ss_pred HhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCCcHHHHHHHHHHHHHHHh
Q 031293 62 VSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFPIDVARRAMQIEESLKA 127 (162)
Q Consensus 62 ~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 127 (162)
+.....+|.++|+..+.+.......+++..+...++|. +.|+.-.-.+.+.......+.++.....
T Consensus 136 lD~~kv~D~~~f~~s~~~~~~e~ge~i~~~~~~qGi~s~v~~v~~L~sv~~K~r~~vkK~l~~~~~k 202 (754)
T KOG1980|consen 136 LDAAKVSDFVVFLLSAVEEDDEFGEQIIRALEAQGIPSYVSVVSDLSSVHEKFRLDVKKALEKRISK 202 (754)
T ss_pred hhhhhhcceeeeecchhhhhhHHHHHHHHHHhhcCCccceeeecccchhchhhhHHHHHHHHHHHHH
Confidence 33445569999999998777777788888898889994 3333322223333333334444444443
No 495
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=54.09 E-value=68 Score=21.90 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=12.1
Q ss_pred ceEEEEeccCCCCcHHHHHHHHHH
Q 031293 98 KYQVVLTKTDTVFPIDVARRAMQI 121 (162)
Q Consensus 98 ~~ivv~nK~Dl~~~~~~~~~~~~~ 121 (162)
..++++...+........+.++.+
T Consensus 173 D~viiV~~~~~~~~~~~~~~~~~l 196 (207)
T TIGR03018 173 GQIVLVVEEGRTTQEAVKEALSAL 196 (207)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHh
Confidence 345555556655555554444443
No 496
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=52.56 E-value=93 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=18.5
Q ss_pred ceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293 98 KYQVVLTKTDTVFPIDVARRAMQIEES 124 (162)
Q Consensus 98 ~~ivv~nK~Dl~~~~~~~~~~~~~~~~ 124 (162)
+++++.+|+|.+..+.......-++..
T Consensus 308 kvlFAATKADHv~~~qh~~L~~LL~~l 334 (443)
T PF04317_consen 308 KVLFAATKADHVTPDQHPNLESLLRQL 334 (443)
T ss_pred hhheeechhccCCHhHHHHHHHHHHHH
Confidence 389999999999777654444333333
No 497
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=50.65 E-value=44 Score=23.82 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=21.6
Q ss_pred CceEEEcCC-CCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 31 TKLCLVDLP-GYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 31 ~~~~ivDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
..|.++|+| |+ ++-.+.++. .+|-+++|.++.-
T Consensus 114 fDyIi~DsPAGI-------------E~G~~~A~~---~Ad~AiVVtnPEv 147 (272)
T COG2894 114 FDYIIIDSPAGI-------------EQGFKNAVY---FADEAIVVTNPEV 147 (272)
T ss_pred CCEEEecCcchH-------------HHHHHhhhh---ccceEEEEcCCCc
Confidence 468999998 66 443444433 3488888877653
No 498
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=50.03 E-value=16 Score=22.68 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=3.7
Q ss_pred eEEEcCC
Q 031293 33 LCLVDLP 39 (162)
Q Consensus 33 ~~ivDtp 39 (162)
+.++||+
T Consensus 89 ~vivDt~ 95 (116)
T cd02034 89 QVVVDTE 95 (116)
T ss_pred EEEEecH
Confidence 5555554
No 499
>COG3106 Predicted ATPase [General function prediction only]
Probab=48.64 E-value=1.2e+02 Score=23.32 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=32.9
Q ss_pred cceeEEEeecCCCCCccHHHHH-------HHHHHh--------------CC-ceEEEEeccCCCCcHHHHHHHHHHHHHH
Q 031293 68 LKRVCLLIDTKWGVKPRDHELI-------SLMERS--------------QT-KYQVVLTKTDTVFPIDVARRAMQIEESL 125 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~-------~~l~~~--------------~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 125 (162)
.|--++++|+-.+++.....++ +.+... .+ +++++.||+|-+..+.......-.++.+
T Consensus 281 fDRQIVLvDclqplN~g~qaf~Dm~~AL~ql~~~F~yG~~~ll~rLfsp~IDkllfaATKADHvt~eqh~nlvsl~rqlv 360 (467)
T COG3106 281 FDRQIVLVDCLQPLNRGPQAFLDMRLALTQLMQSFHYGQRTLLRRLFSPRIDKLLFAATKADHVTHDQHDNLVSLLRQLV 360 (467)
T ss_pred hcceEEehhhccccccChHHHHHHHHHHHHHHHhcCCCchHHHHHHhhhhhceeeeeeecccccChhhhhHHHHHHHHHH
Confidence 3788888998765533222221 122211 12 3899999999997665544443444333
No 500
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=48.01 E-value=40 Score=24.17 Aligned_cols=41 Identities=2% Similarity=0.092 Sum_probs=20.7
Q ss_pred ccceeEEEeecCCCCCccH-HHHHHHHHHh---CCce-EEEEeccCC
Q 031293 67 SLKRVCLLIDTKWGVKPRD-HELISLMERS---QTKY-QVVLTKTDT 108 (162)
Q Consensus 67 ~~~~vi~vid~~~~~~~~~-~~~~~~l~~~---~~~~-ivv~nK~Dl 108 (162)
.+|.+++++.+... .-.+ ..+.+.+... +.++ -++.|+.+.
T Consensus 141 aad~vlip~~p~~~-sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~ 186 (273)
T PRK13232 141 KAKEIYIVASGELM-AIYAANNICKGLAKFAKGGARLGGIICNSRNV 186 (273)
T ss_pred ccceEEEecCchHH-HHHHHHHHHHHHHHHhCCCCceeEEEEeCCCC
Confidence 35788887766431 1111 1233444432 3455 477787653
Done!