Query 031293
Match_columns 162
No_of_seqs 119 out of 1755
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhe_A Probable GTP-binding pr 99.9 1.4E-24 4.9E-29 149.4 16.7 158 1-158 45-210 (223)
2 3pqc_A Probable GTP-binding pr 99.9 1.5E-23 5.3E-28 141.1 18.0 155 1-158 39-193 (195)
3 1svi_A GTP-binding protein YSX 99.9 1.1E-23 3.6E-28 142.2 16.3 156 1-158 39-194 (195)
4 1wb1_A Translation elongation 99.9 3.6E-21 1.2E-25 146.1 12.1 145 1-158 35-188 (482)
5 3iev_A GTP-binding protein ERA 99.9 1.2E-20 4.1E-25 135.9 13.5 150 1-158 26-181 (308)
6 1kk1_A EIF2gamma; initiation o 99.8 1E-19 3.5E-24 135.8 14.3 145 1-158 26-199 (410)
7 1s0u_A EIF-2-gamma, translatio 99.8 1.1E-19 3.7E-24 135.5 11.9 145 1-158 24-197 (408)
8 1wf3_A GTP-binding protein; GT 99.8 4.6E-20 1.6E-24 132.4 9.3 143 1-157 23-171 (301)
9 4dcu_A GTP-binding protein ENG 99.8 1.8E-20 6.2E-25 141.5 7.6 153 1-158 211-368 (456)
10 3j2k_7 ERF3, eukaryotic polype 99.8 5.3E-19 1.8E-23 132.9 13.2 124 15-151 76-217 (439)
11 2hjg_A GTP-binding protein ENG 99.8 5.2E-20 1.8E-24 138.3 6.1 153 1-158 191-348 (436)
12 2elf_A Protein translation elo 99.8 3.8E-19 1.3E-23 130.9 10.3 127 17-158 43-179 (370)
13 3iby_A Ferrous iron transport 99.8 4.6E-20 1.6E-24 129.7 4.9 145 1-156 17-164 (256)
14 2cxx_A Probable GTP-binding pr 99.8 1.2E-17 4E-22 111.8 16.3 153 1-158 17-183 (190)
15 1mky_A Probable GTP-binding pr 99.8 9.3E-19 3.2E-23 131.6 10.6 145 1-158 17-165 (439)
16 3i8s_A Ferrous iron transport 99.8 8.3E-20 2.8E-24 129.6 4.1 147 1-158 19-168 (274)
17 3sjy_A Translation initiation 99.8 4.4E-18 1.5E-22 126.7 12.8 115 31-158 75-191 (403)
18 3t5d_A Septin-7; GTP-binding p 99.8 4.6E-18 1.6E-22 120.6 12.2 156 1-161 24-206 (274)
19 2hjg_A GTP-binding protein ENG 99.8 4.9E-19 1.7E-23 133.0 7.0 143 1-158 19-164 (436)
20 3gee_A MNME, tRNA modification 99.8 1.9E-18 6.4E-23 130.7 9.2 141 1-158 249-397 (476)
21 2dyk_A GTP-binding protein; GT 99.8 1.3E-18 4.5E-23 113.5 7.1 141 1-157 17-160 (161)
22 3a1s_A Iron(II) transport prot 99.8 3E-18 1E-22 120.6 9.1 143 1-158 21-166 (258)
23 1pui_A ENGB, probable GTP-bind 99.8 6.5E-17 2.2E-21 110.0 15.0 157 1-158 42-198 (210)
24 3p26_A Elongation factor 1 alp 99.7 5.9E-18 2E-22 128.6 9.0 122 14-148 91-227 (483)
25 1ega_A Protein (GTP-binding pr 99.7 4.4E-18 1.5E-22 122.2 7.9 145 1-157 24-173 (301)
26 1d2e_A Elongation factor TU (E 99.7 5.3E-17 1.8E-21 120.7 13.6 129 17-158 49-194 (397)
27 2qu8_A Putative nucleolar GTP- 99.7 3.7E-17 1.3E-21 112.9 11.8 151 1-158 45-204 (228)
28 1mky_A Probable GTP-binding pr 99.7 1.9E-17 6.5E-22 124.5 11.1 153 1-158 196-354 (439)
29 4dcu_A GTP-binding protein ENG 99.7 4.5E-18 1.5E-22 128.5 7.1 143 1-158 39-184 (456)
30 3b1v_A Ferrous iron uptake tra 99.7 8.3E-18 2.8E-22 119.1 7.6 142 1-157 19-162 (272)
31 2c78_A Elongation factor TU-A; 99.7 2.9E-17 9.9E-22 122.4 10.4 128 17-157 58-210 (405)
32 2lkc_A Translation initiation 99.7 6.6E-19 2.3E-23 116.8 0.8 143 1-160 24-172 (178)
33 1zun_B Sulfate adenylate trans 99.7 3.7E-17 1.3E-21 122.8 10.0 118 18-148 88-213 (434)
34 1xzp_A Probable tRNA modificat 99.7 4.8E-17 1.6E-21 123.2 10.6 141 1-157 259-403 (482)
35 3qq5_A Small GTP-binding prote 99.7 5.8E-18 2E-22 126.3 5.1 140 1-157 50-194 (423)
36 3k53_A Ferrous iron transport 99.7 2E-17 6.7E-22 117.2 7.6 143 1-158 19-165 (271)
37 2gj8_A MNME, tRNA modification 99.7 2.7E-17 9.3E-22 108.9 7.3 140 1-158 20-165 (172)
38 3mca_A HBS1, elongation factor 99.7 3.6E-19 1.2E-23 137.9 -3.3 129 16-157 237-395 (592)
39 3avx_A Elongation factor TS, e 99.7 4.9E-16 1.7E-20 126.4 14.0 130 15-157 340-484 (1289)
40 1upt_A ARL1, ADP-ribosylation 99.7 2.7E-17 9.2E-22 108.2 5.6 140 1-158 23-168 (171)
41 2wji_A Ferrous iron transport 99.7 5.6E-17 1.9E-21 106.6 7.0 142 1-157 19-163 (165)
42 2nzj_A GTP-binding protein REM 99.7 1.9E-16 6.5E-21 104.5 9.6 141 1-158 20-168 (175)
43 3cb4_D GTP-binding protein LEP 99.7 2.3E-16 7.7E-21 122.2 11.3 111 31-158 71-181 (599)
44 3izq_1 HBS1P, elongation facto 99.7 3.3E-17 1.1E-21 127.4 6.5 119 18-149 229-362 (611)
45 1jny_A EF-1-alpha, elongation 99.7 3.1E-16 1.1E-20 117.8 11.5 120 16-148 66-202 (435)
46 3q72_A GTP-binding protein RAD 99.7 8.4E-17 2.9E-21 105.4 7.5 140 1-159 18-164 (166)
47 2h57_A ADP-ribosylation factor 99.7 5E-17 1.7E-21 109.0 6.1 141 1-160 37-188 (190)
48 3geh_A MNME, tRNA modification 99.7 1.7E-17 5.8E-22 125.1 3.8 140 1-158 240-383 (462)
49 2fg5_A RAB-22B, RAS-related pr 99.7 4.3E-17 1.5E-21 109.6 5.4 140 1-158 39-185 (192)
50 1g7s_A Translation initiation 99.7 3.8E-17 1.3E-21 126.5 5.7 114 32-158 71-217 (594)
51 2g6b_A RAS-related protein RAB 99.7 2.3E-16 8E-21 104.6 8.8 139 1-158 26-173 (180)
52 1r5b_A Eukaryotic peptide chai 99.7 1.6E-16 5.3E-21 120.3 8.9 120 17-149 104-242 (467)
53 2fh5_B SR-beta, signal recogni 99.7 9.6E-16 3.3E-20 104.6 12.0 139 1-156 23-213 (214)
54 1fzq_A ADP-ribosylation factor 99.7 6.6E-17 2.2E-21 107.8 6.0 139 1-158 32-177 (181)
55 1z0f_A RAB14, member RAS oncog 99.7 1.5E-16 5E-21 105.3 7.6 139 1-157 31-176 (179)
56 4bas_A ADP-ribosylation factor 99.7 4.4E-16 1.5E-20 104.9 9.9 139 1-158 33-188 (199)
57 2efe_B Small GTP-binding prote 99.7 1.5E-16 5E-21 105.7 7.2 140 1-158 28-174 (181)
58 1ksh_A ARF-like protein 2; sma 99.7 2E-16 6.9E-21 105.6 7.9 138 1-158 34-179 (186)
59 2il1_A RAB12; G-protein, GDP, 99.7 1.2E-16 4E-21 107.5 6.8 140 1-157 42-188 (192)
60 3izy_P Translation initiation 99.7 4.5E-19 1.5E-23 135.4 -6.2 141 1-158 20-167 (537)
61 1zj6_A ADP-ribosylation factor 99.7 9.9E-17 3.4E-21 107.3 5.8 139 1-158 32-177 (187)
62 1lnz_A SPO0B-associated GTP-bi 99.7 1.5E-16 5.2E-21 115.8 7.1 143 1-158 174-329 (342)
63 1zbd_A Rabphilin-3A; G protein 99.7 5.2E-16 1.8E-20 105.0 9.3 139 1-157 24-169 (203)
64 2wjg_A FEOB, ferrous iron tran 99.7 2.4E-16 8.3E-21 105.3 7.6 143 1-158 23-168 (188)
65 1f60_A Elongation factor EEF1A 99.7 1.4E-16 4.8E-21 120.3 6.8 119 17-148 68-201 (458)
66 2ywe_A GTP-binding protein LEP 99.7 2.8E-16 9.7E-21 121.5 8.6 110 32-158 74-183 (600)
67 1r8s_A ADP-ribosylation factor 99.7 1.8E-16 6E-21 103.7 6.3 113 30-159 43-162 (164)
68 1z0j_A RAB-22, RAS-related pro 99.7 1.2E-16 4E-21 105.0 5.4 140 1-158 22-168 (170)
69 2h17_A ADP-ribosylation factor 99.6 6.9E-17 2.3E-21 107.6 4.1 137 1-156 37-180 (181)
70 3tkl_A RAS-related protein RAB 99.6 4.5E-16 1.5E-20 104.6 8.1 138 1-158 32-178 (196)
71 1r2q_A RAS-related protein RAB 99.6 1.5E-16 5.1E-21 104.4 5.5 140 1-158 22-168 (170)
72 1zd9_A ADP-ribosylation factor 99.6 2.4E-16 8.3E-21 105.6 6.5 142 1-159 38-185 (188)
73 1wms_A RAB-9, RAB9, RAS-relate 99.6 2.1E-15 7.1E-20 99.7 10.6 139 1-157 23-172 (177)
74 2x77_A ADP-ribosylation factor 99.6 6.7E-17 2.3E-21 108.3 3.2 141 1-161 38-186 (189)
75 1ek0_A Protein (GTP-binding pr 99.6 2.2E-16 7.4E-21 103.6 5.6 139 1-157 19-167 (170)
76 3bc1_A RAS-related protein RAB 99.6 9.7E-16 3.3E-20 102.6 8.9 109 32-158 71-184 (195)
77 3tw8_B RAS-related protein RAB 99.6 2.3E-16 7.9E-21 104.6 5.8 138 1-158 25-170 (181)
78 1z08_A RAS-related protein RAB 99.6 8E-16 2.7E-20 101.0 8.2 109 32-158 56-168 (170)
79 2aka_B Dynamin-1; fusion prote 99.6 9.4E-17 3.2E-21 114.9 4.1 124 31-158 125-252 (299)
80 3r7w_A Gtpase1, GTP-binding pr 99.6 5.6E-15 1.9E-19 106.3 13.0 140 1-155 19-177 (307)
81 1g16_A RAS-related protein SEC 99.6 3.5E-16 1.2E-20 102.7 6.2 137 1-158 19-164 (170)
82 2xtp_A GTPase IMAP family memb 99.6 1.3E-15 4.6E-20 107.0 9.5 154 1-159 38-208 (260)
83 2gf9_A RAS-related protein RAB 99.6 2.4E-16 8.1E-21 105.6 5.3 140 1-158 38-184 (189)
84 3reg_A RHO-like small GTPase; 99.6 1.9E-16 6.6E-21 106.5 4.9 112 32-158 72-187 (194)
85 3tr5_A RF-3, peptide chain rel 99.6 4.6E-16 1.6E-20 119.1 7.5 81 18-111 66-149 (528)
86 1zo1_I IF2, translation initia 99.6 3.8E-18 1.3E-22 129.4 -3.9 140 1-156 20-164 (501)
87 3cph_A RAS-related protein SEC 99.6 6.1E-16 2.1E-20 105.3 7.1 137 1-158 36-181 (213)
88 4djt_A GTP-binding nuclear pro 99.6 1.9E-16 6.6E-21 108.3 4.5 140 1-158 27-174 (218)
89 1f6b_A SAR1; gtpases, N-termin 99.6 1.8E-16 6.3E-21 107.2 4.3 137 1-157 41-197 (198)
90 4dsu_A GTPase KRAS, isoform 2B 99.6 2.2E-15 7.5E-20 100.5 9.5 136 1-158 20-165 (189)
91 2a5j_A RAS-related protein RAB 99.6 3.1E-16 1.1E-20 105.3 5.1 139 1-157 37-182 (191)
92 1ky3_A GTP-binding protein YPT 99.6 1.4E-15 4.9E-20 100.8 8.2 142 1-158 24-177 (182)
93 2p5s_A RAS and EF-hand domain 99.6 8.4E-16 2.9E-20 103.8 7.1 142 1-158 44-196 (199)
94 2ew1_A RAS-related protein RAB 99.6 1.2E-15 4E-20 103.5 7.8 108 32-157 76-187 (201)
95 2bme_A RAB4A, RAS-related prot 99.6 8E-16 2.7E-20 102.6 6.8 137 1-157 26-171 (186)
96 2bcg_Y Protein YP2, GTP-bindin 99.6 9.5E-16 3.3E-20 104.0 7.1 138 1-158 24-170 (206)
97 1u8z_A RAS-related protein RAL 99.6 2E-15 6.7E-20 98.7 8.2 109 32-158 53-166 (168)
98 3clv_A RAB5 protein, putative; 99.6 5.6E-16 1.9E-20 104.5 5.7 109 31-158 93-203 (208)
99 3dz8_A RAS-related protein RAB 99.6 2.3E-16 7.8E-21 105.9 3.6 140 1-158 39-185 (191)
100 2fu5_C RAS-related protein RAB 99.6 6.3E-16 2.1E-20 102.9 5.7 109 32-158 58-170 (183)
101 2hup_A RAS-related protein RAB 99.6 1.8E-15 6E-20 102.5 8.0 110 32-158 79-192 (201)
102 2yc2_C IFT27, small RAB-relate 99.6 1.9E-15 6.5E-20 102.4 8.1 108 32-157 74-190 (208)
103 1moz_A ARL1, ADP-ribosylation 99.6 2.6E-16 8.9E-21 104.7 3.7 138 1-158 34-179 (183)
104 1z06_A RAS-related protein RAB 99.6 1.5E-15 5.2E-20 101.7 7.2 140 1-158 36-187 (189)
105 2a9k_A RAS-related protein RAL 99.6 4.8E-15 1.7E-19 98.6 9.5 137 1-158 34-180 (187)
106 2j1l_A RHO-related GTP-binding 99.6 8.6E-15 2.9E-19 100.0 10.9 112 32-158 83-208 (214)
107 3con_A GTPase NRAS; structural 99.6 6.5E-15 2.2E-19 98.6 10.1 108 32-158 70-182 (190)
108 3vqt_A RF-3, peptide chain rel 99.6 1.4E-15 4.8E-20 116.9 7.7 98 14-125 80-180 (548)
109 1x3s_A RAS-related protein RAB 99.6 5.3E-16 1.8E-20 104.1 4.7 139 1-158 31-177 (195)
110 2y8e_A RAB-protein 6, GH09086P 99.6 7.6E-16 2.6E-20 101.9 5.3 138 1-158 30-176 (179)
111 3cpj_B GTP-binding protein YPT 99.6 6.3E-16 2.1E-20 106.3 5.0 140 1-158 29-175 (223)
112 2atx_A Small GTP binding prote 99.6 4.4E-15 1.5E-19 99.8 9.0 111 32-157 67-191 (194)
113 2gco_A H9, RHO-related GTP-bin 99.6 5.6E-15 1.9E-19 100.0 9.5 111 32-157 74-198 (201)
114 4gzl_A RAS-related C3 botulinu 99.6 1.7E-15 5.7E-20 102.8 6.9 110 33-157 80-203 (204)
115 2o52_A RAS-related protein RAB 99.6 1.1E-15 3.8E-20 103.4 5.9 137 1-157 41-186 (200)
116 1z2a_A RAS-related protein RAB 99.6 8.2E-16 2.8E-20 100.7 4.9 139 1-157 21-165 (168)
117 2f7s_A C25KG, RAS-related prot 99.6 8.7E-16 3E-20 105.0 5.1 106 32-157 85-197 (217)
118 2erx_A GTP-binding protein DI- 99.6 3.5E-15 1.2E-19 98.0 7.8 110 32-159 52-167 (172)
119 2oil_A CATX-8, RAS-related pro 99.6 9E-16 3.1E-20 103.1 5.0 139 1-157 41-186 (193)
120 2b6h_A ADP-ribosylation factor 99.6 7.8E-16 2.7E-20 103.6 4.7 112 30-158 72-190 (192)
121 1m2o_B GTP-binding protein SAR 99.6 8.3E-16 2.8E-20 103.3 4.7 136 1-156 39-189 (190)
122 2bov_A RAla, RAS-related prote 99.6 7.6E-15 2.6E-19 99.3 9.5 137 1-158 30-176 (206)
123 2ce2_X GTPase HRAS; signaling 99.6 1.5E-14 5.2E-19 94.2 10.6 108 32-158 52-164 (166)
124 1kao_A RAP2A; GTP-binding prot 99.6 2.6E-15 9E-20 98.0 6.9 109 32-158 52-165 (167)
125 1vg8_A RAS-related protein RAB 99.6 2.2E-15 7.7E-20 102.1 6.7 137 1-157 24-173 (207)
126 2x2e_A Dynamin-1; nitration, h 99.6 3.5E-16 1.2E-20 114.6 2.7 123 31-158 130-257 (353)
127 3o47_A ADP-ribosylation factor 99.6 7.6E-16 2.6E-20 111.8 4.4 137 1-159 181-327 (329)
128 1mh1_A RAC1; GTP-binding, GTPa 99.6 6.3E-15 2.2E-19 98.1 8.4 112 32-158 54-179 (186)
129 3q85_A GTP-binding protein REM 99.6 8.3E-15 2.8E-19 96.1 8.7 110 32-159 52-167 (169)
130 3t5g_A GTP-binding protein RHE 99.6 5.9E-16 2E-20 102.8 3.0 139 1-158 22-168 (181)
131 1c1y_A RAS-related protein RAP 99.6 7.5E-15 2.6E-19 96.0 8.2 109 32-157 52-165 (167)
132 2hxs_A RAB-26, RAS-related pro 99.6 1.2E-15 4.2E-20 100.9 4.5 110 31-158 56-172 (178)
133 2e87_A Hypothetical protein PH 99.6 4.1E-14 1.4E-18 103.8 13.0 145 1-158 183-335 (357)
134 3kkq_A RAS-related protein M-R 99.6 3.5E-15 1.2E-19 99.3 6.7 108 33-158 68-181 (183)
135 2j69_A Bacterial dynamin-like 99.6 7.9E-15 2.7E-19 115.7 9.5 118 31-158 174-324 (695)
136 2fv8_A H6, RHO-related GTP-bin 99.6 7.8E-15 2.7E-19 99.7 7.8 111 32-157 74-198 (207)
137 2qtf_A Protein HFLX, GTP-bindi 99.6 2.1E-14 7E-19 105.5 10.4 150 1-158 195-353 (364)
138 3lxw_A GTPase IMAP family memb 99.6 2.7E-14 9.2E-19 99.8 10.6 150 1-158 37-207 (247)
139 3llu_A RAS-related GTP-binding 99.6 1.6E-14 5.3E-19 97.4 8.6 113 31-157 69-195 (196)
140 3t1o_A Gliding protein MGLA; G 99.6 9.4E-15 3.2E-19 98.1 7.4 108 32-158 75-191 (198)
141 2fn4_A P23, RAS-related protei 99.6 5E-15 1.7E-19 98.1 6.0 137 1-158 25-171 (181)
142 2gf0_A GTP-binding protein DI- 99.6 3.1E-14 1.1E-18 95.8 9.8 108 32-158 57-170 (199)
143 3lxx_A GTPase IMAP family memb 99.5 9.5E-14 3.2E-18 96.4 12.0 150 1-158 45-213 (239)
144 2j0v_A RAC-like GTP-binding pr 99.5 7.6E-15 2.6E-19 99.9 6.0 112 32-158 58-179 (212)
145 3bwd_D RAC-like GTP-binding pr 99.5 2.6E-15 8.8E-20 99.7 3.3 111 32-157 57-179 (182)
146 3j25_A Tetracycline resistance 99.5 2.3E-15 8E-20 117.7 3.4 67 30-109 66-132 (638)
147 3lvq_E ARF-GAP with SH3 domain 99.5 2.4E-15 8.3E-20 114.7 3.4 136 1-158 338-483 (497)
148 4dkx_A RAS-related protein RAB 99.5 1.4E-14 4.6E-19 99.3 6.4 108 32-157 63-174 (216)
149 2iwr_A Centaurin gamma 1; ANK 99.5 1.4E-14 4.9E-19 95.9 6.3 133 1-157 23-167 (178)
150 3cbq_A GTP-binding protein REM 99.5 7.5E-14 2.6E-18 94.1 9.6 139 1-158 39-187 (195)
151 3l0i_B RAS-related protein RAB 99.5 1.8E-16 6.3E-21 107.1 -3.6 140 1-158 49-195 (199)
152 3gj0_A GTP-binding nuclear pro 99.5 6.2E-16 2.1E-20 106.1 -1.2 137 1-157 31-173 (221)
153 2q3h_A RAS homolog gene family 99.5 3.8E-14 1.3E-18 95.6 7.6 140 1-158 36-194 (201)
154 3oes_A GTPase rhebl1; small GT 99.5 1.9E-15 6.6E-20 102.2 1.1 109 32-158 73-186 (201)
155 1jwy_B Dynamin A GTPase domain 99.5 4.3E-15 1.5E-19 107.1 2.6 123 31-158 131-261 (315)
156 2h5e_A Peptide chain release f 99.5 7.2E-14 2.5E-18 107.1 8.9 69 30-111 81-149 (529)
157 3zvr_A Dynamin-1; hydrolase, D 99.5 2.3E-14 8E-19 113.1 6.3 122 30-156 149-275 (772)
158 3ihw_A Centg3; RAS, centaurin, 99.5 2.4E-14 8.3E-19 95.6 5.4 107 32-158 68-179 (184)
159 2atv_A RERG, RAS-like estrogen 99.5 3.2E-14 1.1E-18 95.7 5.9 108 32-158 77-190 (196)
160 3q3j_B RHO-related GTP-binding 99.5 2.2E-14 7.4E-19 98.1 5.0 112 32-158 76-202 (214)
161 3th5_A RAS-related C3 botulinu 99.2 2.6E-15 8.8E-20 101.8 0.0 110 32-156 79-202 (204)
162 2rdo_7 EF-G, elongation factor 99.5 4.1E-13 1.4E-17 106.1 12.1 68 31-111 82-149 (704)
163 2qag_A Septin-2, protein NEDD5 99.5 1.6E-13 5.3E-18 100.8 8.8 124 32-159 96-237 (361)
164 4fn5_A EF-G 1, elongation fact 99.5 1.8E-13 6E-18 108.4 9.4 66 31-109 85-150 (709)
165 2wkq_A NPH1-1, RAS-related C3 99.5 9.3E-14 3.2E-18 100.5 6.8 110 33-157 205-328 (332)
166 3c5c_A RAS-like protein 12; GD 99.4 6.4E-14 2.2E-18 93.7 4.8 108 32-158 70-185 (187)
167 1m7b_A RND3/RHOE small GTP-bin 99.4 1.3E-13 4.5E-18 91.8 5.9 111 32-157 56-181 (184)
168 1gwn_A RHO-related GTP-binding 99.4 2E-13 7E-18 92.7 5.9 111 32-157 77-202 (205)
169 2zej_A Dardarin, leucine-rich 99.4 1.9E-12 6.4E-17 86.3 10.4 116 31-159 56-178 (184)
170 1dar_A EF-G, elongation factor 99.4 4.5E-13 1.6E-17 105.7 8.5 82 17-111 60-144 (691)
171 2xex_A Elongation factor G; GT 99.4 5.1E-13 1.7E-17 105.4 8.4 94 17-124 58-154 (693)
172 1wxq_A GTP-binding protein; st 99.4 6.3E-14 2.1E-18 104.0 3.0 72 1-80 16-114 (397)
173 2g3y_A GTP-binding protein GEM 99.4 7.3E-13 2.5E-17 90.4 7.8 140 1-158 53-202 (211)
174 2dy1_A Elongation factor G; tr 99.4 2.2E-12 7.4E-17 101.5 10.8 67 30-109 73-139 (665)
175 3dpu_A RAB family protein; roc 99.4 1.1E-13 3.7E-18 106.5 2.2 108 31-158 98-207 (535)
176 3p32_A Probable GTPase RV1496/ 99.3 2.7E-12 9.2E-17 94.1 8.1 109 30-158 171-283 (355)
177 1puj_A YLQF, conserved hypothe 99.3 8.3E-12 2.8E-16 88.7 9.9 103 35-158 3-105 (282)
178 1h65_A Chloroplast outer envel 99.3 1.2E-11 4.1E-16 87.4 9.8 107 1-112 55-170 (270)
179 1yrb_A ATP(GTP)binding protein 99.3 4.7E-11 1.6E-15 83.7 12.6 120 31-159 109-257 (262)
180 3def_A T7I23.11 protein; chlor 99.3 2.1E-11 7.2E-16 85.7 10.8 105 1-110 52-165 (262)
181 1udx_A The GTP-binding protein 99.3 2E-11 6.7E-16 91.0 10.5 142 1-158 173-324 (416)
182 2qpt_A EH domain-containing pr 99.3 5.3E-12 1.8E-16 97.2 7.2 88 32-122 155-244 (550)
183 2p67_A LAO/AO transport system 99.3 1E-11 3.5E-16 90.5 7.7 109 30-158 148-260 (341)
184 4a9a_A Ribosome-interacting GT 99.3 1E-11 3.4E-16 91.3 7.4 98 1-108 88-194 (376)
185 1nrj_B SR-beta, signal recogni 99.3 1E-12 3.5E-17 89.7 2.0 74 30-113 54-137 (218)
186 2cjw_A GTP-binding protein GEM 99.2 6.9E-12 2.4E-16 84.2 5.1 109 32-157 57-170 (192)
187 3r7w_B Gtpase2, GTP-binding pr 99.2 7.6E-11 2.6E-15 84.9 9.7 115 31-156 46-171 (331)
188 1n0u_A EF-2, elongation factor 99.2 3.2E-11 1.1E-15 97.0 5.8 102 31-145 98-219 (842)
189 2qnr_A Septin-2, protein NEDD5 99.1 2.8E-10 9.4E-15 81.6 9.7 121 32-157 77-212 (301)
190 2www_A Methylmalonic aciduria 99.1 4E-10 1.4E-14 82.3 10.1 109 30-158 166-278 (349)
191 2qag_C Septin-7; cell cycle, c 99.1 2.3E-10 7.8E-15 85.3 8.4 125 32-160 89-228 (418)
192 3h2y_A GTPase family protein; 99.1 1.2E-13 4.1E-18 101.6 -9.5 123 1-126 176-303 (368)
193 2yv5_A YJEQ protein; hydrolase 99.1 5.8E-10 2E-14 80.0 9.9 87 65-155 77-165 (302)
194 2f9l_A RAB11B, member RAS onco 99.1 9.6E-11 3.3E-15 78.9 5.5 108 32-157 55-166 (199)
195 3ec1_A YQEH GTPase; atnos1, at 99.1 3.1E-10 1.1E-14 83.5 7.9 101 52-157 59-160 (369)
196 3cnl_A YLQF, putative uncharac 99.1 4.9E-11 1.7E-15 83.9 3.2 86 59-156 13-98 (262)
197 1u0l_A Probable GTPase ENGC; p 99.1 1.3E-09 4.5E-14 78.1 10.3 105 31-155 63-169 (301)
198 1cip_A Protein (guanine nucleo 99.1 1.2E-10 4E-15 85.2 4.5 115 30-157 192-342 (353)
199 3h2y_A GTPase family protein; 99.1 4.3E-10 1.5E-14 82.8 7.5 99 52-157 57-158 (368)
200 3ec1_A YQEH GTPase; atnos1, at 99.0 4.4E-13 1.5E-17 98.7 -8.8 123 1-126 178-304 (369)
201 3l82_B F-box only protein 4; T 99.0 8.3E-10 2.8E-14 74.4 7.2 99 54-158 115-222 (227)
202 3c5h_A Glucocorticoid receptor 99.0 1.8E-09 6.3E-14 75.5 9.3 85 67-157 162-253 (255)
203 2qag_B Septin-6, protein NEDD5 99.0 1.4E-09 4.7E-14 81.1 8.8 154 1-160 58-236 (427)
204 1zcb_A G alpha I/13; GTP-bindi 99.0 3.5E-10 1.2E-14 83.0 5.5 115 30-157 200-351 (362)
205 3t34_A Dynamin-related protein 99.0 1.8E-10 6.1E-15 84.5 3.2 115 30-152 135-254 (360)
206 2ged_A SR-beta, signal recogni 98.9 1.3E-09 4.4E-14 72.7 6.0 113 1-126 64-186 (193)
207 1oix_A RAS-related protein RAB 98.9 7.3E-10 2.5E-14 74.1 3.9 107 33-157 80-190 (191)
208 2wsm_A Hydrogenase expression/ 98.9 1.3E-09 4.3E-14 74.4 4.7 82 68-158 130-213 (221)
209 3ohm_A Guanine nucleotide-bind 98.9 8.5E-09 2.9E-13 74.5 8.2 115 30-157 166-316 (327)
210 2xtz_A Guanine nucleotide-bind 98.9 2.5E-09 8.5E-14 78.2 5.2 113 32-157 184-343 (354)
211 2qm8_A GTPase/ATPase; G protei 98.9 5.1E-08 1.8E-12 70.9 12.0 108 30-158 147-260 (337)
212 1jal_A YCHF protein; nucleotid 98.8 1.5E-09 5.1E-14 79.4 3.4 71 1-79 18-108 (363)
213 4fid_A G protein alpha subunit 98.8 9.3E-09 3.2E-13 74.6 6.8 115 30-157 160-326 (340)
214 1azs_C GS-alpha; complex (lyas 98.8 7.4E-09 2.5E-13 76.7 6.3 115 30-157 216-383 (402)
215 3l2o_B F-box only protein 4; s 98.8 1.5E-08 5E-13 71.6 7.3 97 56-158 202-307 (312)
216 2dby_A GTP-binding protein; GD 98.7 4.3E-09 1.5E-13 77.3 3.1 71 1-79 17-111 (368)
217 1t9h_A YLOQ, probable GTPase E 98.7 1.4E-08 4.9E-13 72.7 5.4 86 64-153 83-171 (307)
218 2rcn_A Probable GTPase ENGC; Y 98.6 7.7E-07 2.6E-11 65.0 11.1 84 65-154 128-214 (358)
219 1tq4_A IIGP1, interferon-induc 98.4 2.7E-06 9.2E-11 63.4 10.4 118 32-159 121-253 (413)
220 2hf9_A Probable hydrogenase ni 98.4 5.9E-07 2E-11 61.3 6.4 62 95-159 163-224 (226)
221 2j37_W Signal recognition part 98.3 1.5E-06 5.1E-11 66.3 6.0 114 30-156 183-310 (504)
222 3sop_A Neuronal-specific septi 98.2 1.4E-05 4.7E-10 56.3 9.8 99 31-130 60-174 (270)
223 2ohf_A Protein OLA1, GTP-bindi 98.1 1.1E-06 3.9E-11 64.9 3.0 71 1-79 38-128 (396)
224 3dm5_A SRP54, signal recogniti 97.8 9.2E-05 3.1E-09 55.6 8.6 97 31-147 183-279 (443)
225 1puj_A YLQF, conserved hypothe 97.7 8E-06 2.7E-10 57.9 1.5 44 1-45 136-179 (282)
226 2v3c_C SRP54, signal recogniti 97.5 0.00014 4.6E-09 54.6 5.4 72 30-111 180-253 (432)
227 3kl4_A SRP54, signal recogniti 97.5 0.00029 1E-08 52.8 6.5 99 30-146 179-277 (433)
228 1j8m_F SRP54, signal recogniti 97.4 0.00057 1.9E-08 48.7 7.0 100 30-148 180-280 (297)
229 3cnl_A YLQF, putative uncharac 97.2 5.4E-05 1.9E-09 53.0 0.4 43 1-44 115-157 (262)
230 3szr_A Interferon-induced GTP- 97.2 0.0014 4.7E-08 51.3 8.1 81 30-112 146-230 (608)
231 1f5n_A Interferon-induced guan 96.7 0.0017 5.7E-08 50.6 4.6 83 1-91 54-144 (592)
232 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00031 1.1E-08 52.0 0.4 72 1-79 36-127 (392)
233 2ph1_A Nucleotide-binding prot 95.4 0.02 6.9E-07 39.7 4.6 41 68-108 153-194 (262)
234 4dzz_A Plasmid partitioning pr 95.4 0.032 1.1E-06 36.9 5.4 63 31-109 76-143 (206)
235 2xxa_A Signal recognition part 95.2 0.067 2.3E-06 40.1 6.9 71 30-110 183-254 (433)
236 3bfv_A CAPA1, CAPB2, membrane 94.7 0.13 4.4E-06 36.0 7.1 64 32-109 193-257 (271)
237 3cio_A ETK, tyrosine-protein k 94.4 0.078 2.7E-06 37.7 5.4 43 67-109 236-279 (299)
238 2ffh_A Protein (FFH); SRP54, s 94.3 0.2 6.8E-06 37.5 7.5 71 30-110 180-251 (425)
239 3ug7_A Arsenical pump-driving 94.1 1.1 3.9E-05 32.3 11.2 88 69-156 238-332 (349)
240 1wcv_1 SOJ, segregation protei 94.1 0.3 1E-05 33.5 7.9 80 31-126 112-198 (257)
241 1vma_A Cell division protein F 94.0 0.44 1.5E-05 34.0 8.7 78 30-112 186-265 (306)
242 3cwq_A Para family chromosome 94.0 0.11 3.6E-06 34.8 5.2 67 30-110 67-134 (209)
243 2oze_A ORF delta'; para, walke 93.9 0.56 1.9E-05 32.9 9.1 64 31-109 155-225 (298)
244 3la6_A Tyrosine-protein kinase 93.5 0.1 3.5E-06 36.9 4.5 64 32-109 203-267 (286)
245 3e70_C DPA, signal recognition 93.4 0.2 6.8E-06 36.1 6.0 98 31-148 212-309 (328)
246 1zu4_A FTSY; GTPase, signal re 93.4 0.32 1.1E-05 34.9 7.0 76 30-111 191-269 (320)
247 3k9g_A PF-32 protein; ssgcid, 92.9 0.24 8.4E-06 34.1 5.7 63 31-108 145-209 (267)
248 2yhs_A FTSY, cell division pro 92.8 0.55 1.9E-05 35.9 7.8 75 30-110 375-452 (503)
249 1hyq_A MIND, cell division inh 92.4 0.18 6.2E-06 34.7 4.6 65 30-109 110-175 (263)
250 3kjh_A CO dehydrogenase/acetyl 92.3 0.13 4.6E-06 34.8 3.7 63 30-107 131-194 (254)
251 3q9l_A Septum site-determining 92.1 0.18 6E-06 34.5 4.1 64 30-108 113-185 (260)
252 1ls1_A Signal recognition part 91.9 2.4 8.2E-05 29.9 11.1 71 30-110 180-251 (295)
253 1g3q_A MIND ATPase, cell divis 91.8 0.13 4.5E-06 34.7 3.2 64 31-109 112-176 (237)
254 3zq6_A Putative arsenical pump 91.6 2.7 9.4E-05 29.9 10.2 89 69-157 223-318 (324)
255 3end_A Light-independent proto 90.9 0.2 6.9E-06 35.4 3.5 64 31-108 157-225 (307)
256 3io3_A DEHA2D07832P; chaperone 90.3 0.97 3.3E-05 32.8 6.7 87 69-157 232-330 (348)
257 3ea0_A ATPase, para family; al 89.4 0.34 1.2E-05 32.8 3.5 64 31-109 119-185 (245)
258 2xj4_A MIPZ; replication, cell 86.8 3.9 0.00013 28.5 7.7 14 97-110 179-192 (286)
259 2woo_A ATPase GET3; tail-ancho 85.8 7.7 0.00026 27.7 11.6 40 69-108 222-262 (329)
260 3iqw_A Tail-anchored protein t 85.3 2.9 9.8E-05 30.1 6.5 88 69-157 223-321 (334)
261 2px0_A Flagellar biosynthesis 85.3 7.9 0.00027 27.3 9.7 71 30-111 182-254 (296)
262 2woj_A ATPase GET3; tail-ancho 84.4 5 0.00017 29.1 7.5 41 67-107 234-275 (354)
263 3ez9_A Para; DNA binding, wing 84.1 2.4 8.2E-05 31.2 5.8 34 30-78 247-280 (403)
264 1ihu_A Arsenical pump-driving 82.9 4.2 0.00014 31.5 6.9 83 68-151 490-580 (589)
265 1byi_A Dethiobiotin synthase; 80.7 2.5 8.7E-05 27.9 4.5 40 70-109 140-180 (224)
266 1ni3_A YCHF GTPase, YCHF GTP-b 80.5 1.4 4.8E-05 32.6 3.3 60 95-158 223-306 (392)
267 1ihu_A Arsenical pump-driving 76.5 11 0.00036 29.3 7.3 41 69-109 199-240 (589)
268 3q5d_A Atlastin-1; G protein, 75.7 4.6 0.00016 30.4 4.9 53 32-92 141-193 (447)
269 3ez2_A Plasmid partition prote 73.4 8.7 0.0003 28.1 5.9 34 30-78 244-277 (398)
270 1rj9_A FTSY, signal recognitio 72.7 19 0.00066 25.4 7.3 40 68-110 221-261 (304)
271 3do6_A Formate--tetrahydrofola 71.6 14 0.00048 28.3 6.5 64 87-157 351-416 (543)
272 1cp2_A CP2, nitrogenase iron p 70.2 7.8 0.00027 26.4 4.8 67 31-109 116-187 (269)
273 2afh_E Nitrogenase iron protei 66.6 11 0.00036 26.1 4.9 66 31-108 119-189 (289)
274 2f62_A Nucleoside 2-deoxyribos 63.6 20 0.00068 22.8 5.3 50 57-106 57-108 (161)
275 3pzx_A Formate--tetrahydrofola 53.2 13 0.00044 28.6 3.5 64 88-158 366-429 (557)
276 4a1x_C CP5-46-A peptide; hydro 50.7 8.4 0.00029 15.7 1.2 12 30-41 4-15 (26)
277 4fyk_A Deoxyribonucleoside 5'- 50.5 42 0.0014 21.1 5.1 47 55-104 56-102 (152)
278 1ko7_A HPR kinase/phosphatase; 47.7 19 0.00067 25.7 3.6 24 133-156 105-128 (314)
279 2khz_A C-MYC-responsive protei 46.8 53 0.0018 20.8 5.3 47 58-107 68-114 (165)
280 3v7e_A Ribosome-associated pro 45.9 24 0.00081 19.5 3.2 20 88-107 45-64 (82)
281 3ehd_A Uncharacterized conserv 43.7 42 0.0014 21.4 4.4 50 56-106 58-107 (162)
282 3abz_A Beta-glucosidase I; gly 42.6 68 0.0023 26.4 6.4 48 57-104 563-622 (845)
283 2obn_A Hypothetical protein; s 42.1 80 0.0027 22.9 6.1 49 96-154 298-347 (349)
284 2lbw_A H/ACA ribonucleoprotein 42.0 23 0.00077 21.3 2.8 21 87-107 54-74 (121)
285 3pg5_A Uncharacterized protein 40.0 24 0.00083 25.4 3.2 34 30-79 153-187 (361)
286 1s2d_A Purine trans deoxyribos 39.6 63 0.0021 20.6 4.8 45 58-103 72-116 (167)
287 1eiw_A Hypothetical protein MT 38.9 27 0.00092 20.7 2.7 36 65-103 36-74 (111)
288 1f8y_A Nucleoside 2-deoxyribos 37.7 56 0.0019 20.6 4.3 49 57-106 68-116 (157)
289 3hyn_A Putative signal transdu 37.0 28 0.00097 22.8 2.8 40 66-105 78-118 (189)
290 2xzm_U Ribosomal protein L7AE 36.6 43 0.0015 20.3 3.5 38 68-107 41-78 (126)
291 1rlg_A 50S ribosomal protein L 34.3 39 0.0014 20.1 3.0 20 88-107 62-81 (119)
292 3zyz_A Beta-D-glucoside glucoh 32.9 97 0.0033 24.9 5.8 45 61-105 421-482 (713)
293 3jyw_G 60S ribosomal protein L 30.9 44 0.0015 19.9 2.8 19 90-108 62-80 (113)
294 2jvf_A De novo protein M7; tet 30.6 68 0.0023 17.3 3.6 45 113-158 30-74 (96)
295 2xmz_A Hydrolase, alpha/beta h 30.3 85 0.0029 20.7 4.6 16 31-46 43-58 (269)
296 2aif_A Ribosomal protein L7A; 29.8 53 0.0018 20.1 3.1 54 88-158 76-131 (135)
297 3qxc_A Dethiobiotin synthetase 29.1 1.3E+02 0.0046 20.3 6.5 40 70-109 163-202 (242)
298 1xbi_A 50S ribosomal protein L 28.1 34 0.0012 20.4 2.0 20 88-107 64-83 (120)
299 2dst_A Hypothetical protein TT 27.4 94 0.0032 17.9 4.0 15 31-45 43-57 (131)
300 3fkq_A NTRC-like two-domain pr 26.9 75 0.0026 22.9 4.0 11 68-78 282-292 (373)
301 4ido_A Atlastin-1; GTPase, GTP 26.4 2.1E+02 0.0072 21.6 6.4 54 32-93 141-194 (457)
302 3sty_A Methylketone synthase 1 26.3 1.3E+02 0.0046 19.3 5.1 17 30-46 39-55 (267)
303 1xkl_A SABP2, salicylic acid-b 26.2 1.3E+02 0.0046 19.9 5.1 16 30-45 31-46 (273)
304 2wfl_A Polyneuridine-aldehyde 26.1 1.4E+02 0.0049 19.6 5.3 16 30-45 37-52 (264)
305 2fc3_A 50S ribosomal protein L 25.7 43 0.0015 20.1 2.2 18 90-107 65-82 (124)
306 3v7q_A Probable ribosomal prot 23.7 45 0.0015 19.1 1.9 20 88-107 53-72 (101)
307 1iup_A META-cleavage product h 23.7 1.4E+02 0.0047 20.0 4.7 17 30-46 54-70 (282)
308 3j21_Z 50S ribosomal protein L 23.4 98 0.0033 17.6 3.3 19 90-108 51-70 (99)
309 1vi6_A 30S ribosomal protein S 23.4 1.2E+02 0.004 20.3 4.0 29 71-104 118-146 (208)
310 2cby_A ATP-dependent CLP prote 23.1 1.2E+02 0.004 20.0 4.1 37 68-104 57-93 (208)
311 2cjp_A Epoxide hydrolase; HET: 22.3 1.4E+02 0.0049 20.2 4.7 16 31-46 59-74 (328)
312 3on1_A BH2414 protein; structu 22.1 51 0.0017 18.9 1.9 20 88-107 52-71 (101)
313 1y7o_A ATP-dependent CLP prote 21.8 1.3E+02 0.0044 20.0 4.1 37 68-104 75-111 (218)
314 2xt0_A Haloalkane dehalogenase 21.8 80 0.0027 21.5 3.2 15 31-45 74-88 (297)
315 3fob_A Bromoperoxidase; struct 21.3 1.2E+02 0.004 20.2 4.0 15 31-45 55-69 (281)
316 2x41_A Beta-glucosidase; hydro 21.2 1.6E+02 0.0055 23.6 5.1 40 65-104 442-498 (721)
317 3of5_A Dethiobiotin synthetase 21.2 1.9E+02 0.0064 19.2 5.0 40 69-108 141-181 (228)
318 1u2e_A 2-hydroxy-6-ketonona-2, 20.2 1.7E+02 0.0059 19.3 4.7 15 31-45 67-81 (289)
319 1r3d_A Conserved hypothetical 20.2 1.5E+02 0.0052 19.4 4.3 16 30-45 43-58 (264)
320 2yys_A Proline iminopeptidase- 20.1 1.7E+02 0.0059 19.5 4.7 17 30-46 52-68 (286)
321 2puj_A 2-hydroxy-6-OXO-6-pheny 20.1 1.7E+02 0.0059 19.5 4.6 15 31-45 64-78 (286)
No 1
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.4e-24 Score=149.41 Aligned_cols=158 Identities=28% Similarity=0.430 Sum_probs=129.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC----CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++....+.++..+|+|+....+... .++.+|||||++........++.+..++..|+.....+|++++|+|
T Consensus 45 lin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d 124 (223)
T 4dhe_A 45 AINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMD 124 (223)
T ss_dssp HHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEe
Confidence 589999984357889999999988877765 6799999999987655555677778888899988888899999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+..+++..+..++..+...++|+++|+||+|+.+........+.+.+.+... .....+++++||++|.|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 204 (223)
T 4dhe_A 125 ARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHAL 204 (223)
T ss_dssp TTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHH
Confidence 9988888788888888888899999999999997776655555665555442 012358999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 205 l~~~~~ 210 (223)
T 4dhe_A 205 IESWLR 210 (223)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998765
No 2
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=1.5e-23 Score=141.11 Aligned_cols=155 Identities=30% Similarity=0.510 Sum_probs=129.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++. ....+++.+|+|........+.++.++||||++........++.+..+...++.....++++++|+|+..+
T Consensus 39 li~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~ 117 (195)
T 3pqc_A 39 LLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP 117 (195)
T ss_dssp HHHHHHTS-CCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHHcC-ccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC
Confidence 57889888 46778899999999888888888999999998776666666777888888898888889999999999888
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.......+..++...++|+++|+||+|+.+..+.....+.+++.+...+ ..+++++||++|.|+++++++|.+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 118 PQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG--EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC--CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC--CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 7777777788888889999999999999876666666666666666433 259999999999999999999998764
No 3
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.92 E-value=1.1e-23 Score=142.17 Aligned_cols=156 Identities=27% Similarity=0.485 Sum_probs=117.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++......+++.+|+|.....+..+.++.++||||++........++.+......++.....+|++++|+|+..+
T Consensus 39 li~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 118 (195)
T 1svi_A 39 FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA 118 (195)
T ss_dssp HHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC
Confidence 57889888445678899999999888888888999999999877666666777777888888888788999999999988
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+..+.+++.++...+.|+++|+||+|+.+..+.....+.+++.+... ...+++++||++|.|+++++++|.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 119 PSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID--PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC--TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHccc--CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 777777777888878899999999999987766655555665545432 2358999999999999999999987654
No 4
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=3.6e-21 Score=146.07 Aligned_cols=145 Identities=26% Similarity=0.387 Sum_probs=106.6
Q ss_pred ChhcccCCCC-----ceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeE
Q 031293 1 MLNALTRQWG-----VVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVC 72 (162)
Q Consensus 1 lin~L~~~~~-----~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 72 (162)
|+|+|++... ....+..+|+|.+..+. .. +..+.++||||| +.+...+......+|+++
T Consensus 35 Li~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~~i 101 (482)
T 1wb1_A 35 LSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-------------ADLIRAVVSAADIIDLAL 101 (482)
T ss_dssp HHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH-------------HHHHHHHHHHTTSCCEEE
T ss_pred HHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEE
Confidence 5788887731 13456678888877643 33 447999999999 777888888888899999
Q ss_pred EEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc-CCCCCCeEEeecCCCCCHHHHHH
Q 031293 73 LLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN-NSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 73 ~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
+|+|+.++...++.+++..+...++|+++|+||+|+.++...+...+.+++.+... +....+++++||++|.|+++|++
T Consensus 102 lVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~ 181 (482)
T 1wb1_A 102 IVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKN 181 (482)
T ss_dssp EEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHH
T ss_pred EEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHH
Confidence 99999998888888888888888999999999999997666666666777766654 33346999999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.++
T Consensus 182 ~L~~~i~ 188 (482)
T 1wb1_A 182 LIITTLN 188 (482)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9988654
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=1.2e-20 Score=135.95 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=109.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+.+++.|++|+.... +.. +.++.++||||++.........+.+......++ ..+|++++|+|
T Consensus 26 Lin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l---~~aD~il~VvD 101 (308)
T 3iev_A 26 LLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL---EEADVILFMID 101 (308)
T ss_dssp HHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH---HHCSEEEEEEE
T ss_pred HHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh---hcCCEEEEEEe
Confidence 68999999 57788999999986553 233 446999999999664322223333333333443 45699999999
Q ss_pred cCCCCCccHHHH-HHHHHHhCCceEEEEeccCCC-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 77 TKWGVKPRDHEL-ISLMERSQTKYQVVLTKTDTV-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 77 ~~~~~~~~~~~~-~~~l~~~~~~~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+..+.+..+... ++.+...++|+++|+||+|+. +........+.+.+.+ + ...+++++||++|.|+++++++|.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---~-~~~~i~~vSA~~g~gv~~L~~~l~ 177 (308)
T 3iev_A 102 ATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---P-ELTEIVPISALKGANLDELVKTIL 177 (308)
T ss_dssp TTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC---T-TCCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhc---c-CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 998877777776 777777789999999999998 5554444444443332 1 235899999999999999999998
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+.++
T Consensus 178 ~~l~ 181 (308)
T 3iev_A 178 KYLP 181 (308)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8764
No 6
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=1e-19 Score=135.81 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=109.1
Q ss_pred ChhcccCCCC-ceeccCCCCcceEEEEEE--e------------------------CCceEEEcCCCCcccccCHHHHHH
Q 031293 1 MLNALTRQWG-VVRTSDKPGLTQTINFFK--L------------------------GTKLCLVDLPGYGFAYAKEEVKDA 53 (162)
Q Consensus 1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~--~------------------------~~~~~ivDtpG~~~~~~~~~~~~~ 53 (162)
|+|+|++... ....+..+|+|.+..+.. + ..++.++|||||
T Consensus 26 Li~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh------------ 93 (410)
T 1kk1_A 26 LTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH------------ 93 (410)
T ss_dssp HHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSH------------
T ss_pred HHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCCh------------
Confidence 5778876621 123445688887665421 1 145899999999
Q ss_pred HHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCC
Q 031293 54 WEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 131 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 131 (162)
..+...++++...+|++++|+|+.++. ..++.+++..+...+. |+++|+||+|+.+........+.+++.+......
T Consensus 94 -~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 172 (410)
T 1kk1_A 94 -EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE 172 (410)
T ss_dssp -HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred -HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 778889999999999999999999886 6677777777766665 6899999999987665555556666666654334
Q ss_pred CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 132 VQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 132 ~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..+++++||++|.|+++|+++|.+.++
T Consensus 173 ~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 173 NAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp TCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 579999999999999999999987553
No 7
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=1.1e-19 Score=135.54 Aligned_cols=145 Identities=21% Similarity=0.271 Sum_probs=97.9
Q ss_pred ChhcccCCCC-ceeccCCCCcceEEEEEEe--------------------------CCceEEEcCCCCcccccCHHHHHH
Q 031293 1 MLNALTRQWG-VVRTSDKPGLTQTINFFKL--------------------------GTKLCLVDLPGYGFAYAKEEVKDA 53 (162)
Q Consensus 1 lin~L~~~~~-~~~~~~~~g~t~~~~~~~~--------------------------~~~~~ivDtpG~~~~~~~~~~~~~ 53 (162)
|+|+|++... ....+..+|+|.++.+... ...+.++|||||
T Consensus 24 Li~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh------------ 91 (408)
T 1s0u_A 24 LTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGH------------ 91 (408)
T ss_dssp HHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSH------------
T ss_pred HHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCH------------
Confidence 5778886621 1233446788876654211 145899999999
Q ss_pred HHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCC
Q 031293 54 WEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDTVFPIDVARRAMQIEESLKANNSL 131 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 131 (162)
+.+...+.++...+|++++|+|++++. ..++.+++..+...+. |+++|+||+|+.+........+.+++.+......
T Consensus 92 -~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (408)
T 1s0u_A 92 -ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAE 170 (408)
T ss_dssp -HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTT
T ss_pred -HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 788888999999999999999999886 6677777777766664 6999999999986543333344555566544334
Q ss_pred CCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 132 VQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 132 ~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..+++++||++|.|+++|+++|.+.++
T Consensus 171 ~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 171 NAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 569999999999999999999987553
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=4.6e-20 Score=132.42 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=102.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..|++|++... +.. +.++.++||||+.... ....+. +........+.+|++++|+|+
T Consensus 23 Lln~l~g~-~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~---~~~~~~~~l~~ad~il~VvD~ 96 (301)
T 1wf3_A 23 LLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEF---MDQEVYEALADVNAVVWVVDL 96 (301)
T ss_dssp HHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHH---HHHHHHHHTSSCSEEEEEEET
T ss_pred HHHHHhCC-ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHH---HHHHHHHHHhcCCEEEEEEEC
Confidence 58999998 56778999999986443 222 4569999999985431 111222 233333445667999999999
Q ss_pred CCCCCccHHHHHHHHHHh--CCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERS--QTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
..+++..+.+++..+... +.|+++|+||+|+..... .. +.+++. ....+++++||++|.|++++++.|.
T Consensus 97 ~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~---~~~~~~-----~~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 97 RHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAM---KAYHEL-----LPEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp TSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHH---HHHHHT-----STTSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHH---HHHHHh-----cCcCcEEEEeCCCCCCHHHHHHHHH
Confidence 988877777777777776 899999999999986544 22 222221 2234799999999999999999998
Q ss_pred Hhh
Q 031293 155 KIA 157 (162)
Q Consensus 155 ~~~ 157 (162)
+.+
T Consensus 169 ~~l 171 (301)
T 1wf3_A 169 ALM 171 (301)
T ss_dssp TTC
T ss_pred Hhc
Confidence 765
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.8e-20 Score=141.53 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=103.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..||+|++... +.. +.++.+|||||++........++.+.. ...+...+.+|++++|+|+
T Consensus 211 lin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~--~~~~~~~~~ad~~llviD~ 287 (456)
T 4dcu_A 211 LVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV--LRALKAIDRSEVVAVVLDG 287 (456)
T ss_dssp HHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHH--HHHHHHHHHCSEEEEEEET
T ss_pred HHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHH--HHHHHHHhhCCEEEEEEeC
Confidence 57899988 46789999999987532 233 457999999997553211111122221 2222233456999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH--HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.+++...+.+++..+...++|+++|+||+|+.+.. ..++..+.+++.+... ...+++++||++|.|++++++++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 288 EEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG--TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC--CCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 99998888888888888899999999999998533 2344444454444332 2369999999999999999999987
Q ss_pred hhh
Q 031293 156 IAR 158 (162)
Q Consensus 156 ~~~ 158 (162)
.+.
T Consensus 366 ~~~ 368 (456)
T 4dcu_A 366 ASE 368 (456)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 10
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.81 E-value=5.3e-19 Score=132.86 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=94.4
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-------cc
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-------PR 84 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-------~~ 84 (162)
+..+|+|.+..+..+ +.++.++||||| +++.+.+..+.+.+|++++|+|+.++.. .+
T Consensus 76 er~~GiTid~~~~~~~~~~~~~~iiDTPGh-------------~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~q 142 (439)
T 3j2k_7 76 ERDKGKTVEVGRAYFETEKKHFTILDAPGH-------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ 142 (439)
T ss_pred HhhcCceEEEeEEEEecCCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCch
Confidence 345788988876544 557999999999 7778888888888999999999998764 56
Q ss_pred HHHHHHHHHHhCCc-eEEEEeccCCCCc----HHHHHHHHHHHHHHHhcCCC---CCCeEEeecCCCCCHHHHHH
Q 031293 85 DHELISLMERSQTK-YQVVLTKTDTVFP----IDVARRAMQIEESLKANNSL---VQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 85 ~~~~~~~l~~~~~~-~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~---~~~i~~~Sa~~~~g~~~l~~ 151 (162)
+.+++..+...++| +++|+||+|+.+. ...+...+.+.+.+...+.. ..+++++||++|.|++++.+
T Consensus 143 t~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 143 TREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 77788888878888 8999999999642 22344445555555444432 36899999999999998543
No 11
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=5.2e-20 Score=138.35 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=98.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..||+|++.... .. +.++.+|||||+..........+.+.. ...+...+.+|++++|+|+
T Consensus 191 Lin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~--~~~~~~~~~ad~~llv~D~ 267 (436)
T 2hjg_A 191 LVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV--LRALKAIDRSEVVAVVLDG 267 (436)
T ss_dssp HHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHH--HHHHHHHHHCSEEEEEEET
T ss_pred HHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHH--HHHHHHHHhCCEEEEEEcC
Confidence 58999998 567789999999876532 33 456999999998543210000111221 1122233446999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.++.+.++..++..+...++|+++|+||+|+.+... ..+..+.+.+.+... ...+++++||++|.|++++++.+.+
T Consensus 268 ~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 268 EEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL--DYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG--TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC--CCCCEEEEecccCCCHHHHHHHHHH
Confidence 999888888888888778899999999999986433 233334444443322 2369999999999999999999987
Q ss_pred hhh
Q 031293 156 IAR 158 (162)
Q Consensus 156 ~~~ 158 (162)
.+.
T Consensus 346 ~~~ 348 (436)
T 2hjg_A 346 ASE 348 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=3.8e-19 Score=130.87 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=99.6
Q ss_pred CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|+|.+..++.+ +.++.++||||| ++++..+..+.+.+|++++|+| ..+...+..+++..+.
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh-------------~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~ 108 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSY-------------PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALD 108 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTT-------------TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHH
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCCh-------------HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHH
Confidence 3466666665544 456999999999 5566677777788899999999 8888888888888888
Q ss_pred HhCCce-EEEEe-ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEE--eecCC---CCCHHHHHHHHHHhhh
Q 031293 94 RSQTKY-QVVLT-KTDTVFPIDVARRAMQIEESLKANNSLVQPVMM--VSSKS---GAGIRSLRTVLSKIAR 158 (162)
Q Consensus 94 ~~~~~~-ivv~n-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~Sa~~---~~g~~~l~~~i~~~~~ 158 (162)
..++|. ++++| |+|+ +....+...+.+++.+...+....++++ +||++ +.|+++|++.|.+.++
T Consensus 109 ~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 109 LLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 889997 99999 9999 6555555556666666655444469999 99999 9999999999987654
No 13
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=4.6e-20 Score=129.66 Aligned_cols=145 Identities=22% Similarity=0.189 Sum_probs=97.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...+++.||+|.+.... .. +..+.++||||+.............+.+...++.. ..+|++++|+|+
T Consensus 17 L~n~L~g~--~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~-~~~d~vi~VvDa 93 (256)
T 3iby_A 17 LFNALTNA--NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID-LEYDCIINVIDA 93 (256)
T ss_dssp HHHHHHTT--SEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH-SCCSEEEEEEEG
T ss_pred HHHHHHCC--CCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh-CCCCEEEEEeeC
Confidence 58999998 47789999999766543 33 44699999999855432100001112344455432 457999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
... .....+...+.+.++|+++|+||+|+..........+.+.+.+ + .+++++||++|.|++++++++.+.
T Consensus 94 s~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 94 CHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL---G---CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH---C---SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---C---CCEEEEECCCCCCHHHHHHHHHhh
Confidence 862 3334455666677899999999999863322211122333333 2 499999999999999999999865
No 14
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-17 Score=111.81 Aligned_cols=153 Identities=21% Similarity=0.367 Sum_probs=104.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccccc-CHHHHHHHHHHHHHHHhc-CcccceeEEEeecC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVST-RVSLKRVCLLIDTK 78 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~vi~vid~~ 78 (162)
|+|+|++. ...++..||+|.....+..+ ++.++||||++.... ....++.+......++.. ...+++++++.|+.
T Consensus 17 li~~l~~~--~~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~ 93 (190)
T 2cxx_A 17 LIYRLTGK--KVRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGK 93 (190)
T ss_dssp HHHHHHSC--CCSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETT
T ss_pred HHHHHhCc--CCccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcch
Confidence 57888887 35567788988877777666 699999999865432 333456667777777776 77788999999976
Q ss_pred CC-----------CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC-CCCCeEEeecCCCCCH
Q 031293 79 WG-----------VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS-LVQPVMMVSSKSGAGI 146 (162)
Q Consensus 79 ~~-----------~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Sa~~~~g~ 146 (162)
.. ....+.+++..+...++|+++|+||+|+.+.. ....+.+.+.++.... ...+++++||++|.|+
T Consensus 94 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 171 (190)
T 2cxx_A 94 AAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 171 (190)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTH
T ss_pred hhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCH
Confidence 41 11222334455555689999999999998654 2222333333321000 0125799999999999
Q ss_pred HHHHHHHHHhhh
Q 031293 147 RSLRTVLSKIAR 158 (162)
Q Consensus 147 ~~l~~~i~~~~~ 158 (162)
++++++|.+.+.
T Consensus 172 ~~l~~~l~~~~~ 183 (190)
T 2cxx_A 172 ERLKNRIFEVIR 183 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999988764
No 15
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=9.3e-19 Score=131.63 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=90.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++...... +.++.+|||||+..... ....+.+......++ +.+|++++|+|+
T Consensus 17 L~nrl~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~---~~ad~il~V~D~ 91 (439)
T 1mky_A 17 LFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMI---READLVLFVVDG 91 (439)
T ss_dssp HHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHH---TTCSEEEEEEET
T ss_pred HHHHHhCC-CCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHH---HhCCEEEEEEEC
Confidence 68999998 46779999999998765433 55699999999853210 111122223333343 456999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHH-HHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI-EESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+++..+.++..+++..++|+++|+||+|+... .. ... .+.. ..+ ..+++++||++|.|++++++++.+.
T Consensus 92 ~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~---~~~~~~~~-~lg--~~~~~~iSA~~g~gv~~L~~~i~~~ 163 (439)
T 1mky_A 92 KRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE---REVKPELY-SLG--FGEPIPVSAEHNINLDTMLETIIKK 163 (439)
T ss_dssp TTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH---HHTHHHHG-GGS--SCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH---HHHHHHHH-hcC--CCCEEEEeccCCCCHHHHHHHHHHh
Confidence 9988888878888888889999999999998522 11 111 2222 222 2378999999999999999999876
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
+.
T Consensus 164 l~ 165 (439)
T 1mky_A 164 LE 165 (439)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=8.3e-20 Score=129.56 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=98.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...+++.||+|.+.....+ +..+.+|||||+.............+.....++. ...+|++++|+|+
T Consensus 19 Lin~l~g~--~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~-~~~~d~ii~VvD~ 95 (274)
T 3i8s_A 19 LFNQLTGS--RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL-SGDADLLINVVDA 95 (274)
T ss_dssp HHHHHHTT--CEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH-HTCCSEEEEEEEG
T ss_pred HHHHHhCC--CcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh-hcCCCEEEEEecC
Confidence 68999999 3688999999987765433 5579999999986543110000011223333432 3456999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
... .....+...+.+.++|+++|+||+|+.+........+.+.+.+ + .+++++||++|.|+++++++|.+.+
T Consensus 96 ~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 96 SNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL---G---CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp GGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH---T---SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc---C---CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 862 3344455667777999999999999853222111122333333 2 4999999999999999999998765
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 168 ~ 168 (274)
T 3i8s_A 168 A 168 (274)
T ss_dssp C
T ss_pred h
Confidence 3
No 17
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=4.4e-18 Score=126.68 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=94.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-CccHHHHHHHHHHhCC-ceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-KPRDHELISLMERSQT-KYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-~~~~~~~~~~l~~~~~-~~ivv~nK~Dl 108 (162)
.++.++||||| +.+...+......+|++++|+|+.++. ..+..+++..+...+. |+++|+||+|+
T Consensus 75 ~~~~iiDtPGh-------------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCC-------------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 45899999999 666777777778889999999999886 6667777777776664 89999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+........+.+.+.+...+....+++++||++|.|+++|+++|.+.++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 98776666667777777665555579999999999999999999987553
No 18
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.77 E-value=4.6e-18 Score=120.59 Aligned_cols=156 Identities=18% Similarity=0.257 Sum_probs=90.4
Q ss_pred ChhcccCCCCceeccC-------CCCcceEEEEEEe--CC---ceEEEcCCCCcccccC----HHHHHHHHHHHHHHHhc
Q 031293 1 MLNALTRQWGVVRTSD-------KPGLTQTINFFKL--GT---KLCLVDLPGYGFAYAK----EEVKDAWEELVKEYVST 64 (162)
Q Consensus 1 lin~L~~~~~~~~~~~-------~~g~t~~~~~~~~--~~---~~~ivDtpG~~~~~~~----~~~~~~~~~~~~~~~~~ 64 (162)
|+|+|++.+ ....+. .++++.+.....+ +. ++.++||||+|+.... ....+........|+..
T Consensus 24 Lin~L~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~ 102 (274)
T 3t5d_A 24 LINSLFLTD-LYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNA 102 (274)
T ss_dssp HHHHHSSSC-C---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-ccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 588988883 333222 3333333333333 22 6899999999765321 11111122222344433
Q ss_pred C----------cccceeEEEeec-CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCC
Q 031293 65 R----------VSLKRVCLLIDT-KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQ 133 (162)
Q Consensus 65 ~----------~~~~~vi~vid~-~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (162)
. ..+|++++++++ ..++...+.++++.+.. ++|+++|+||+|+....+.....+.+.+.+...+.
T Consensus 103 ~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i--- 178 (274)
T 3t5d_A 103 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKI--- 178 (274)
T ss_dssp HHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTC---
T ss_pred hcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 1 225677777754 55778888888888876 89999999999999877777766777777766553
Q ss_pred CeEEeecCCCCCHHHHHHHHHHhhhhhc
Q 031293 134 PVMMVSSKSGAGIRSLRTVLSKIARFAK 161 (162)
Q Consensus 134 ~i~~~Sa~~~~g~~~l~~~i~~~~~~~k 161 (162)
+++++||.++.|+++++++|.+.++|.-
T Consensus 179 ~v~~~sa~~~~~~~~l~~~l~~~~p~~v 206 (274)
T 3t5d_A 179 KIYEFPETDDEEENKLVKKIKDRLPLAV 206 (274)
T ss_dssp CCCCC-----------CHHHHHTCSEEC
T ss_pred eEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence 7889999999999999999999887653
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=4.9e-19 Score=133.03 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=87.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++...... +.++.+|||||+...... ..+.+......++ ..+|++++|+|+
T Consensus 19 L~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~---~~ad~il~vvD~ 92 (436)
T 2hjg_A 19 IFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIAM---DEADVIIFMVNG 92 (436)
T ss_dssp HHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHHH---HHCSEEEEEEET
T ss_pred HHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHHH---HhCCEEEEEEeC
Confidence 58999998 56789999999999887655 557999999998432111 2222333333333 456999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.+..+.++...+...++|+++|+||+|+..... ...+.. ..+ ..+++++||.+|.|++++++++.+.+
T Consensus 93 ~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~------~~~~~~-~lg--~~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 93 REGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFY-SLG--FGEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp TTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----------CCCSSG-GGS--SCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh------hHHHHH-HcC--CCCeEEEeCcCCCChHHHHHHHHHhc
Confidence 999888888888888878899999999999864321 111111 112 23789999999999999999998876
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 164 ~ 164 (436)
T 2hjg_A 164 K 164 (436)
T ss_dssp G
T ss_pred C
Confidence 4
No 20
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.76 E-value=1.9e-18 Score=130.74 Aligned_cols=141 Identities=21% Similarity=0.184 Sum_probs=75.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+.+++.||+|++.... .. +..+.+|||||+.... ..++.+ ++........+|++++|+|
T Consensus 249 Lln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~VvD 321 (476)
T 3gee_A 249 LLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILYLLD 321 (476)
T ss_dssp HHHHCC-------------------CEEEEETTEEEEEEC--------------------------CCCSSCSEEEEEEE
T ss_pred HHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch------hHHHHHHHHHHHhhcccCCEEEEEEE
Confidence 58999998 567899999999987543 33 4569999999994321 111111 3445556678899999999
Q ss_pred cCCCCCc----cHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKP----RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~----~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+..+.+. ....++..+. ++|+++|+||+|+.+...... +.+.+. + ..+++++||++|.|+++++++
T Consensus 322 ~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~--~~~~i~vSAktg~GI~eL~~~ 391 (476)
T 3gee_A 322 LGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG----T--GTEVIGISALNGDGIDTLKQH 391 (476)
T ss_dssp TTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH----H--TSCEEECBTTTTBSHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc----C--CCceEEEEECCCCCHHHHHHH
Confidence 9887665 2333333332 689999999999986554321 222221 1 158999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 392 i~~~~~ 397 (476)
T 3gee_A 392 MGDLVK 397 (476)
T ss_dssp HTHHHH
T ss_pred HHHHHh
Confidence 988764
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.76 E-value=1.3e-18 Score=113.48 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=88.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|.+. ....++..+++|.+...... +.++.++||||+..... .. ..+..........+|++++++|+
T Consensus 17 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~---~~~~~~~~~~~~~~~~~i~v~d~ 89 (161)
T 2dyk_A 17 LFNRLLKK-RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WE---KKIQEKVDRALEDAEVVLFAVDG 89 (161)
T ss_dssp HHHHHHHC-CC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CC---HHHHHHHHHHTTTCSEEEEEEES
T ss_pred HHHHHhCC-CeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hH---HHHHHHHHHHHHhCCEEEEEEEC
Confidence 46788877 34556778888876554433 44699999999854211 00 11222222334556999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
..+.+....++..++...++|+++|+||+|+.+.. +...+.. ..+ ..+++++||++|.|++++++++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 90 RAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE------LYLGPLY-GLG--FGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp SSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG------GGCGGGG-GGS--SCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCcccHhHHHHHHHHHhcCCCEEEEEECcccccch------HhHHHHH-hCC--CCCeEEEecccCCChHHHHHHHHHhC
Confidence 98877777677777777889999999999997542 1122222 222 23799999999999999999998765
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=3e-18 Score=120.57 Aligned_cols=143 Identities=21% Similarity=0.258 Sum_probs=96.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..||+|.+.....+ +.++.++||||+........ . +.+...++.. ..+|++++|+|+
T Consensus 21 L~n~l~g~--~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~---e~v~~~~~~~-~~~d~ii~V~D~ 93 (258)
T 3a1s_A 21 LFNALTGT--KQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI-D---EKIARDYLLK-GDADLVILVADS 93 (258)
T ss_dssp HHHHHHTT--CEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH-H---HHHHHHHHHH-SCCSEEEEEEET
T ss_pred HHHHHHCC--CCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH-H---HHHHHHHHhh-cCCCEEEEEeCC
Confidence 58999998 3458899999987665433 44699999999854422111 1 2233444433 456999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
... .....+...+.+.++|+++|+||+|+..........+.+.+. .+ .+++++||++|.|++++++++.+.+
T Consensus 94 t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~---lg---~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 94 VNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKH---LG---IPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp TSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHH---HC---SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred Cch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHH---cC---CCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 863 223345556666789999999999985322211111223222 22 4999999999999999999998865
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 166 ~ 166 (258)
T 3a1s_A 166 Q 166 (258)
T ss_dssp H
T ss_pred h
Confidence 4
No 23
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=6.5e-17 Score=110.05 Aligned_cols=157 Identities=34% Similarity=0.454 Sum_probs=100.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++....+.+++.+|+|.....+..+..+.++||||++....+....+.+...+..++.....++.++++.|+..+
T Consensus 42 Ll~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 121 (210)
T 1pui_A 42 ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP 121 (210)
T ss_dssp HHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC
Confidence 57889888435667889999987776666557999999998653222222334455566666666677999999999877
Q ss_pred CCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 81 VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 81 ~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
....+.++..++...++|++++.||+|+.+..+.+...+.++..+.... ....++++||+++.|+++++++|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 122 LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN-GDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC-SCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC-CCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6555555666777778999999999999875543332344555554332 1347889999999999999999987654
No 24
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=5.9e-18 Score=128.64 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=86.8
Q ss_pred ccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCc
Q 031293 14 TSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKP 83 (162)
Q Consensus 14 ~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~ 83 (162)
.+..+|+|.+.....+ +.++.++||||+ +.+...+....+.+|++++|+|++.+ +..
T Consensus 91 ~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~-------------~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~ 157 (483)
T 3p26_A 91 EERERGVTVSICTSHFSTHRANFTIVDAPGH-------------RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 157 (483)
T ss_dssp ----CCSSCCCCEEEEECSSCEEEEECCCCC-------------GGGHHHHHHHHTTCSEEEEEEECCC------CCCCH
T ss_pred hHhhcCcceEeeeEEEecCCceEEEEECCCc-------------HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhh
Confidence 4556788887766544 557999999999 55666666777788999999999876 445
Q ss_pred cHHHHHHHHHHhCC-ceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293 84 RDHELISLMERSQT-KYQVVLTKTDTVF--PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 84 ~~~~~~~~l~~~~~-~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~ 148 (162)
+..+++..+...++ |+++|+||+|+.+ +...++..+.+.+.+...+.. ..+++++||++|.|+++
T Consensus 158 qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 158 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 66677777777775 5999999999986 333445555565555443321 35899999999999974
No 25
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=4.4e-18 Score=122.16 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=100.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+.++..|++|+.... +.. +.++.++||||+.. ....... .+..........+|++++|+|
T Consensus 24 Lln~L~g~-~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~-----~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd 97 (301)
T 1ega_A 24 LLNKLLGQ-KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM-----EEKRAINRLMNKAASSSIGDVELVIFVVE 97 (301)
T ss_dssp HHHHHHTC-SEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH-----HHHHHHHHHHTCCTTSCCCCEEEEEEEEE
T ss_pred HHHHHHCC-CccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc-----cchhhHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 58999998 57788999999875433 333 44689999999931 0001111 122223345567899999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
+.. ++..+.++++.+...+.|.++++||+|+.. ...... .+.+.....+ ..+++++||++|.|++++++.+.+
T Consensus 98 ~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~---~l~~l~~~~~--~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 98 GTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLP---HLQFLASQMN--FLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp TTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHH---HHHHHHTTSC--CSEEEECCTTTTTTHHHHHHHHHT
T ss_pred CCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHH---HHHHHHHhcC--cCceEEEECCCCCCHHHHHHHHHH
Confidence 987 777777777777767899999999999986 333322 2222222222 236899999999999999999987
Q ss_pred hh
Q 031293 156 IA 157 (162)
Q Consensus 156 ~~ 157 (162)
.+
T Consensus 172 ~l 173 (301)
T 1ega_A 172 HL 173 (301)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 26
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.74 E-value=5.3e-17 Score=120.65 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=99.9
Q ss_pred CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|.|.+..+..+ +.++.++||||| .++...+..+.+.+|++++|+|+.++...++.+++..+.
T Consensus 49 ~~giTi~~~~~~~~~~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~ 115 (397)
T 1d2e_A 49 ARGITINAAHVEYSTAARHYAHTDCPGH-------------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR 115 (397)
T ss_dssp ETTEEEECEEEEEECSSCEEEEEECSSH-------------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred hcCcEEEeeeEEeccCCeEEEEEECCCh-------------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 5777877665444 467999999999 777778888888999999999999988888888888888
Q ss_pred HhCCc-eEEEEeccCCCC-cHHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCC----------HHHHHHHHHHhhh
Q 031293 94 RSQTK-YQVVLTKTDTVF-PIDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAG----------IRSLRTVLSKIAR 158 (162)
Q Consensus 94 ~~~~~-~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g----------~~~l~~~i~~~~~ 158 (162)
..++| +++++||+|+.+ +...+...+.+++.+...+. ...+++++||++|.| +++|+++|.+.++
T Consensus 116 ~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 116 QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 78999 689999999985 33334444556666665542 236999999999764 8899999987553
No 27
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.73 E-value=3.7e-17 Score=112.88 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=90.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ... ++..+++|++...... +.++.+|||||+............+ ..+..+ ...+|++++|+|+
T Consensus 45 Lin~l~~~-~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~-~~~~~~---~~~~d~~i~v~d~ 118 (228)
T 2qu8_A 45 FMNIVSRA-NVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEM-TTITAL---AHINGVILFIIDI 118 (228)
T ss_dssp HHHHHTTT-CEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHH-HHHHHH---HTSSEEEEEEEET
T ss_pred HHHHHhCC-CCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHH-HHHHHh---hccccEEEEEEec
Confidence 57888888 333 6778888887765433 3469999999995432111100001 112233 2345899999999
Q ss_pred CCCCCcc---HHHHHHHHHHh--CCceEEEEeccCCCCcHHHH-HHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 78 KWGVKPR---DHELISLMERS--QTKYQVVLTKTDTVFPIDVA-RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 78 ~~~~~~~---~~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
..+.+-. ...++..+... ++|+++|+||+|+.+..... ...+...+.....+ ...+++++||++|.|++++++
T Consensus 119 ~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 119 SEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK-NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp TCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC-SCEEEEECCTTTCTTHHHHHH
T ss_pred ccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC-CCceEEEEecccCCCHHHHHH
Confidence 8754322 23445555554 78999999999998543322 11123333334332 124899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 198 ~l~~~i~ 204 (228)
T 2qu8_A 198 TACELLK 204 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987664
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=1.9e-17 Score=124.51 Aligned_cols=153 Identities=21% Similarity=0.242 Sum_probs=96.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCH-HHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKE-EVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+.+++.||+|++... ..+ +..+.++||||+....... ...+.+.. .......+.+|++++++|
T Consensus 196 Lln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~--~~~~~~i~~ad~vllv~d 272 (439)
T 1mky_A 196 LFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN--YRVVDSIEKADVVVIVLD 272 (439)
T ss_dssp HHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC--HHHHHHHHHCSEEEEEEE
T ss_pred HHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHH--HHHHHHHhhCCEEEEEEe
Confidence 58999998 56789999999987543 333 4568999999983321000 00000000 011122234599999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID--VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+..+.+..+..+...+...++|+++|+||+|+.+... ..+..+.+.+.+... ...+++++||++|.|++++++.+.
T Consensus 273 ~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 273 ATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI--DYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp TTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG--TTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC--CCCcEEEEECCCCCCHHHHHHHHH
Confidence 9988777777777777778999999999999985432 222223333333222 236899999999999999999998
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+.++
T Consensus 351 ~~~~ 354 (439)
T 1mky_A 351 LAYA 354 (439)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=4.5e-18 Score=128.47 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=88.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.+++.||+|++...... +..+.+|||||+... ....++.+......++ ..+|++++|+|+
T Consensus 39 L~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~---~~ad~il~VvD~ 112 (456)
T 4dcu_A 39 IFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAM---DEADVIIFMVNG 112 (456)
T ss_dssp HHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHHHH---HHCSEEEEEEES
T ss_pred HHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc--chHHHHHHHHHHHhhH---hhCCEEEEEEeC
Confidence 58999998 56789999999998887655 557999999998532 1112333333344443 346999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+++..+.++.+++...++|+++|+||+|+.+... ...+... . ....++++||.+|.|+.++++++.+.+
T Consensus 113 ~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~------~~~e~~~-l--g~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 113 REGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA------NIYDFYS-L--GFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp SSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCSGG-G--SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred CCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh------hHHHHHH-c--CCCceEEeecccccchHHHHHHHHhhc
Confidence 999999898888999888999999999999863221 1111111 1 223678999999999999999998765
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 184 ~ 184 (456)
T 4dcu_A 184 K 184 (456)
T ss_dssp G
T ss_pred c
Confidence 3
No 30
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=8.3e-18 Score=119.07 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=95.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
|+|+|++. ...+++.||+|.+.....+ +.++.+|||||+....... .. +.+...|+.. ..+|++++|+|+.
T Consensus 19 L~n~L~g~--~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~-~~---e~v~~~~~~~-~~~d~vi~V~D~t 91 (272)
T 3b1v_A 19 LFNLITGH--NQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS-PE---AKVARDYLLS-QRADSILNVVDAT 91 (272)
T ss_dssp HHHHHHCC--CCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS-HH---HHHHHHHHHT-TCCSEEEEEEEGG
T ss_pred HHHHHHCC--CCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC-hH---HHHHHHHHhc-CCCCEEEEEecCC
Confidence 58999988 3568999999986554333 4579999999985432111 11 2344555543 3579999999997
Q ss_pred CCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 79 WGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.. .....+...+.+.++|+++|+||+|+..........+.+.+.+ + .+++++||++|.|+++++.++.+.+
T Consensus 92 ~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 92 NL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL---G---VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp GH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---T---SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---C---CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 52 2233344556667899999999999753221111112233322 2 4899999999999999999998765
No 31
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.72 E-value=2.9e-17 Score=122.37 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=95.9
Q ss_pred CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|+|.+.....+ +.++.++||||| .++...+....+.+|++++|+|+.++...+..+++..+.
T Consensus 58 ~~GiTi~~~~~~~~~~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~ 124 (405)
T 2c78_A 58 ARGITINTAHVEYETAKRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124 (405)
T ss_dssp HHTCCCSCEEEEEECSSCEEEEEECCCS-------------GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHH
T ss_pred HcCCCEEeeeeEeccCCeEEEEEECCCh-------------HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHH
Confidence 4677766554333 467999999999 455666666677889999999999888888888888888
Q ss_pred HhCCc-eEEEEeccCCCCc-HHHHHHHHHHHHHHHhcCC--CCCCeEEeecCCCCC------------------HHHHHH
Q 031293 94 RSQTK-YQVVLTKTDTVFP-IDVARRAMQIEESLKANNS--LVQPVMMVSSKSGAG------------------IRSLRT 151 (162)
Q Consensus 94 ~~~~~-~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~~g------------------~~~l~~ 151 (162)
..++| +++|+||+|+.+. ...+...+.+++.+...+. ...+++++||++|.| +++|++
T Consensus 125 ~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~ 204 (405)
T 2c78_A 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD 204 (405)
T ss_dssp HTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred HcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence 88999 8899999999843 3334444456666655442 236899999999987 788888
Q ss_pred HHHHhh
Q 031293 152 VLSKIA 157 (162)
Q Consensus 152 ~i~~~~ 157 (162)
+|.+.+
T Consensus 205 ~l~~~l 210 (405)
T 2c78_A 205 AIDEYI 210 (405)
T ss_dssp HHHHHS
T ss_pred HHHhhc
Confidence 887754
No 32
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=6.6e-19 Score=116.79 Aligned_cols=143 Identities=19% Similarity=0.209 Sum_probs=91.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++.. ...+..|++|.+... ... +.++.++||||+.... .........+|++++|+|+
T Consensus 24 l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~ 88 (178)
T 2lkc_A 24 LLDAIRHSK--VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVVAA 88 (178)
T ss_dssp HHHHHHTTC--SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEEET
T ss_pred HHHHHhCCc--cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEEEC
Confidence 467777762 233445666554433 223 4568999999983321 1112334567999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC---CCCCeEEeecCCCCCHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS---LVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
..+......+.+..+...++|+++|+||+|+.+... .+..+.+.. ...... ...+++++||++|.|+++++++|.
T Consensus 89 ~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 89 DDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELME-YNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp TCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTT-TTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHh-cCcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 887666666666666667899999999999985321 111111111 111100 114799999999999999999999
Q ss_pred Hhhhhh
Q 031293 155 KIARFA 160 (162)
Q Consensus 155 ~~~~~~ 160 (162)
+.++..
T Consensus 167 ~~~~~~ 172 (178)
T 2lkc_A 167 LVSEME 172 (178)
T ss_dssp HHHHHT
T ss_pred Hhhhhh
Confidence 877643
No 33
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=3.7e-17 Score=122.78 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=85.5
Q ss_pred CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293 18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER 94 (162)
Q Consensus 18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~ 94 (162)
+|.|.+..+..+ +.++.++||||| +.+...+......+|++++|+|+.++...+..+++..+..
T Consensus 88 rGiTi~~~~~~~~~~~~~~~iiDtpGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~ 154 (434)
T 1zun_B 88 QGITIDVAYRYFSTAKRKFIIADTPGH-------------EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL 154 (434)
T ss_dssp --CCCCCEEEEEECSSEEEEEEECCCS-------------GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred CCcEEEeeeeEeecCCceEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 455655554333 446999999999 4444555555677899999999999887778788777777
Q ss_pred hCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHH
Q 031293 95 SQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 95 ~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~ 148 (162)
.++| +++|+||+|+.+ +.......+.+++.+...+ ....+++++||++|.|+++
T Consensus 155 ~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 155 LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 7765 899999999986 2334445566666666554 2335899999999999987
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.71 E-value=4.8e-17 Score=123.21 Aligned_cols=141 Identities=20% Similarity=0.280 Sum_probs=95.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCc-ccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYG-FAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+.+++.||+|++.... .+ +..+.++||||+. ....... .+ .+.........+|++++|+|
T Consensus 259 Lln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve---~~--gi~~~~~~~~~aD~vl~VvD 332 (482)
T 1xzp_A 259 LLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE---RL--GIERTLQEIEKADIVLFVLD 332 (482)
T ss_dssp HHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC---CC--CHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH---HH--HHHHHHHHhhcccEEEEEec
Confidence 58999988 567899999999976543 33 4569999999986 3311000 00 01111122234599999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+..+.+..+.++++.+ .++|+++|+||+|+.+.... +.+.+.+. ...+++++||++|.|+++++++|.+.
T Consensus 333 ~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~----~~~~~~~~----~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 333 ASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE----EEIKNKLG----TDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp TTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH----HHHHHHHT----CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCH----HHHHHHhc----CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9887666565565554 37899999999999753211 12222222 12589999999999999999999875
Q ss_pred h
Q 031293 157 A 157 (162)
Q Consensus 157 ~ 157 (162)
+
T Consensus 403 ~ 403 (482)
T 1xzp_A 403 T 403 (482)
T ss_dssp T
T ss_pred H
Confidence 4
No 35
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.71 E-value=5.8e-18 Score=126.26 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=88.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CC-ceEEEcCCCCccccc-CHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GT-KLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~-~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++. ..+.++..+|+|.+...... +. ++.+|||||+.+... .... ..........+|++++|+
T Consensus 50 Lin~L~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~-------~~~~~~~l~~aD~vllVv 121 (423)
T 3qq5_A 50 FMNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR-------VEKARRVFYRADCGILVT 121 (423)
T ss_dssp TTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC-------HHHHHHHHTSCSEEEEEC
T ss_pred HHHHHHcC-CCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH-------HHHHHHHHhcCCEEEEEE
Confidence 68999998 56778899999987765443 22 699999999965321 1000 111222233569999999
Q ss_pred ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
|+ +.......++..+.+.++|+++|+||+|+.+.... + ..++..... ..+++++||++|.|+++++++|.+
T Consensus 122 D~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~---~~~~l~~~~---g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 122 DS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-E---LKGLYESRY---EAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp SS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-H---HHHHSSCCT---TCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred eC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-H---HHHHHHHHc---CCCEEEEECCCCCCHHHHHHHHHH
Confidence 99 55666777888888889999999999999865432 1 111111122 258999999999999999999998
Q ss_pred hh
Q 031293 156 IA 157 (162)
Q Consensus 156 ~~ 157 (162)
.+
T Consensus 193 ~l 194 (423)
T 3qq5_A 193 IL 194 (423)
T ss_dssp HS
T ss_pred hh
Confidence 76
No 36
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.71 E-value=2e-17 Score=117.16 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=95.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..||+|.+...... +..+.++||||+......... +.....++. ...+|++++|+|+
T Consensus 19 L~n~l~g~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~~~-~~~~d~vi~v~D~ 91 (271)
T 3k53_A 19 IFNALTGL--RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID----ELIARNFIL-DGNADVIVDIVDS 91 (271)
T ss_dssp HHHHHHTT--CEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH----HHHHHHHHH-TTCCSEEEEEEEG
T ss_pred HHHHHhCC--CcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH----HHHHHHhhh-ccCCcEEEEEecC
Confidence 58999998 3478899999987665333 446899999998543221111 123334433 3457999999999
Q ss_pred CCCCCccHHHHHHHHHHhC-CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 78 KWGVKPRDHELISLMERSQ-TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~-~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
... .....+...+...+ +|+++|+||+|+..........+.+.+.+ + .+++++||++|.|+++++.++.+.
T Consensus 92 ~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g---~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 92 TCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL---G---VPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp GGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH---S---SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred Ccc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc---C---CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 864 23334444555566 99999999999753222111122333333 2 489999999999999999999886
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
+.
T Consensus 164 ~~ 165 (271)
T 3k53_A 164 AE 165 (271)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 37
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.70 E-value=2.7e-17 Score=108.93 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=90.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..||+|++... ... +..+.++||||+..... ...+. .+.......+.+|++++|+|+
T Consensus 20 Ll~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~----~~~~~~~~~~~ad~~i~v~D~ 93 (172)
T 2gj8_A 20 LLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD-EVERI----GIERAWQEIEQADRVLFMVDG 93 (172)
T ss_dssp HHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS-HHHHH----HHHHHHHHHHTCSEEEEEEET
T ss_pred HHHHHhCC-CcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh-HHHHH----HHHHHHHHHHhCCEEEEEEEC
Confidence 57889887 34567888999875533 333 34689999999854211 11000 112222223556999999999
Q ss_pred CCCCCccHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
..+.+.....++..+... ++|+++|+||+|+.+... +.... ...+++++||++|.|+++++++|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---------~~~~~---~~~~~~~~SA~~g~gv~~l~~~l~ 161 (172)
T 2gj8_A 94 TTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL---------GMSEV---NGHALIRLSARTGEGVDVLRNHLK 161 (172)
T ss_dssp TTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC---------EEEEE---TTEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh---------hhhhc---cCCceEEEeCCCCCCHHHHHHHHH
Confidence 876655555555555443 589999999999853210 00011 124789999999999999999998
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+.+.
T Consensus 162 ~~~~ 165 (172)
T 2gj8_A 162 QSMG 165 (172)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 8764
No 38
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=3.6e-19 Score=137.91 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=77.7
Q ss_pred CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-----C--CccH
Q 031293 16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-----V--KPRD 85 (162)
Q Consensus 16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-----~--~~~~ 85 (162)
..+|+|.+..+..+ +.++.+|||||| ..+...+..+...+|++++|+|+..+ + ..++
T Consensus 237 ~~~GiTid~~~~~~~~~~~~i~iiDTPGh-------------~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt 303 (592)
T 3mca_A 237 RARGVTMDVASTTFESDKKIYEIGDAPGH-------------RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT 303 (592)
T ss_dssp ----------------------CCEEESS-------------SEEEEECCC-------CCSEEEEEECCSSTTSCSCSSH
T ss_pred hcCCeeEEeeEEEEEeCCeEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHH
Confidence 36788888776544 457999999999 44445555566778999999999874 3 7788
Q ss_pred HHHHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHH-HhcCC--CCCCeEEeecCCCCCHH------------
Q 031293 86 HELISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESL-KANNS--LVQPVMMVSSKSGAGIR------------ 147 (162)
Q Consensus 86 ~~~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~Sa~~~~g~~------------ 147 (162)
.+++..+...++| +++|+||+|+.+ +.......+.+.+.+ ...+. ...+++++||++|.|++
T Consensus 304 ~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~ 383 (592)
T 3mca_A 304 REHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383 (592)
T ss_dssp HHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCC
T ss_pred HHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccc
Confidence 8888888888887 899999999975 444555556666666 43332 12479999999999998
Q ss_pred --HHHHHHHHhh
Q 031293 148 --SLRTVLSKIA 157 (162)
Q Consensus 148 --~l~~~i~~~~ 157 (162)
.|++.|....
T Consensus 384 g~~Lle~l~~~~ 395 (592)
T 3mca_A 384 GPTLLSALDQLV 395 (592)
T ss_dssp SCCHHHHHHTSC
T ss_pred hHHHHHHHHhhc
Confidence 7888887643
No 39
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.69 E-value=4.9e-16 Score=126.37 Aligned_cols=130 Identities=22% Similarity=0.245 Sum_probs=95.1
Q ss_pred cCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHH
Q 031293 15 SDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 15 ~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~ 91 (162)
+..+|+|.+.....+ +.++.++||||| +++...+..+...+|++++|+|+.++...++.+++..
T Consensus 340 ErerGITIdva~v~f~~~~~kI~IIDTPGH-------------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~l 406 (1289)
T 3avx_A 340 EKARGITINTSHVEYDTPTRHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 406 (1289)
T ss_dssp --------CCSCEEEECSSCEEEEEECCCH-------------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHH
T ss_pred cccCceeEEEEEEEEcCCCEEEEEEECCCh-------------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHH
Confidence 346777766543333 467999999999 7788888888899999999999999888888888888
Q ss_pred HHHhCCc-eEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC--CCCCeEEeecCCC--------CCHHHHHHHHHHhh
Q 031293 92 MERSQTK-YQVVLTKTDTVFPID-VARRAMQIEESLKANNS--LVQPVMMVSSKSG--------AGIRSLRTVLSKIA 157 (162)
Q Consensus 92 l~~~~~~-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~i~~~Sa~~~--------~g~~~l~~~i~~~~ 157 (162)
+...++| +++|+||+|+.+..+ .+...+.+++.+...+. ...+++++||++| .|+++|+++|.+.+
T Consensus 407 l~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 407 GRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 8888999 789999999985332 33344556666665542 2469999999999 57889999888754
No 40
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.69 E-value=2.7e-17 Score=108.23 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=82.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++.. .....+..|.+ ...... +.++.++||||+... ......+ .+.+|++++|+|+..
T Consensus 23 l~~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~d~~~ 86 (171)
T 1upt_A 23 ILYRLQVGE-VVTTIPTIGFN--VETVTYKNLKFQVWDLGGLTSI----------RPYWRCY---YSNTDAVIYVVDSCD 86 (171)
T ss_dssp HHHHHHHSS-CCCCCCCSSEE--EEEEEETTEEEEEEEECCCGGG----------GGGGGGG---CTTCSEEEEEEETTC
T ss_pred HHHHHhcCC-CCCcCCcCccc--eEEEEECCEEEEEEECCCChhh----------hHHHHHH---hccCCEEEEEEECCC
Confidence 467776652 32223333322 222223 456899999998321 2222222 346799999999986
Q ss_pred CCCc--cHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 80 GVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 80 ~~~~--~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+.+- ...++...+.. .++|+++|+||+|+.+.....+..+.+.. ........+++++||++|.|+++++++|.
T Consensus 87 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 87 RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL--PALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp CTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG--GGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc--hhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 5322 22222233332 47899999999999865322222212110 11111224799999999999999999998
Q ss_pred Hhhh
Q 031293 155 KIAR 158 (162)
Q Consensus 155 ~~~~ 158 (162)
+.+.
T Consensus 165 ~~i~ 168 (171)
T 1upt_A 165 ETLK 168 (171)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 41
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=5.6e-17 Score=106.60 Aligned_cols=142 Identities=23% Similarity=0.293 Sum_probs=84.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..||+|.+... +.. +..+.++||||+....... .. +.+...|++. ..++++++++|+
T Consensus 19 L~~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~~---~~~~~~~~~~-~~~~~~i~v~D~ 91 (165)
T 2wji_A 19 IFNALTGE--NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-ID---EIIARDYIIN-EKPDLVVNIVDA 91 (165)
T ss_dssp HHHHHHCC--SSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-HH---HHHHHHHHHH-HCCSEEEEEEET
T ss_pred HHHHHhCC--CeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc-hh---HHHHHHHHhc-CCCCEEEEEecC
Confidence 57888876 3446777887764432 333 4568999999984431111 11 2223344332 246999999998
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
... .....++..+.+.++|+++|.||+|+..........+.+.+. .+ .+++++||++|.|++++++++.+.+
T Consensus 92 ~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 92 TAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI---LG---VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHH---HT---SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred Cch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHH---hC---CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 752 122334455555689999999999975221111111222222 22 4899999999999999999998765
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=104.50 Aligned_cols=141 Identities=10% Similarity=-0.056 Sum_probs=82.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....+.+.+|.+........+. ++.++||||+.... +......+ .+.++++++|+|.
T Consensus 20 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~---~~~~~~~i~v~d~ 87 (175)
T 2nzj_A 20 LASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------KSWSQESC---LQGGSAYVIVYSI 87 (175)
T ss_dssp HHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHHT---TTSCSEEEEEEET
T ss_pred HHHHHhcC-CCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc--------hhhhHHhh---cccCCEEEEEEEC
Confidence 57888887 4555667788776555555533 57899999983210 01112222 2346999999998
Q ss_pred CCCCCccH-HHHHHHHHHh----CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS----QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~----~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+...... +..+......+ .+++++||++|.|+++++++
T Consensus 88 ~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 88 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV--EEGRACAVVFD---CKFIETSATLQHNVAELFEG 162 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHHT---SEEEECBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH--HHHHHHHHHcC---CeEEEEecCCCCCHHHHHHH
Confidence 75321111 1233334432 689999999999975322211 11222222222 48999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 163 l~~~~~ 168 (175)
T 2nzj_A 163 VVRQLR 168 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 43
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=2.3e-16 Score=122.16 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=82.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.++||||| .++.....+..+.+|++++|+|+.++...++...+..+...++|+++|+||+|+.+
T Consensus 71 ~~l~liDTPGh-------------~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGH-------------VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCC-------------GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCc-------------hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccc
Confidence 35889999999 33333344444557999999999998888887777766677899999999999985
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.. .....+.+.+.+ +....+++++||++|.|+++++++|.+.++
T Consensus 138 a~-~~~v~~ei~~~l---g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 138 AD-PERVAEEIEDIV---GIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CC-HHHHHHHHHHHT---CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cc-HHHHHHHHHHHh---CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 43 223334444433 222347999999999999999999987654
No 44
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.3e-17 Score=127.36 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=89.3
Q ss_pred CCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccHHH
Q 031293 18 PGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRDHE 87 (162)
Q Consensus 18 ~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~~~ 87 (162)
+|+|.+.....+ +.++.+|||||+ +.+...+..+.+.+|++++|+|++.+ ...+..+
T Consensus 229 ~GiTid~~~~~~~~~~~~~~iiDTPG~-------------e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e 295 (611)
T 3izq_1 229 RGVTVSICTSHFSTHRANFTIVDAPGH-------------RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 295 (611)
T ss_dssp TTTCCSCSCCEEECSSCEEEEEECCSS-------------SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred CCeeEeeeeEEEecCCceEEEEECCCC-------------cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence 688876655333 557999999999 66788888888999999999999864 3566777
Q ss_pred HHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHHH
Q 031293 88 LISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 88 ~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~l 149 (162)
++..+...++| +++|+||+|+.+ ........+.+...+...+.. ..+++++||++|.|++++
T Consensus 296 ~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 296 HMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 77777777765 999999999986 333444455555555443321 358999999999999854
No 45
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=3.1e-16 Score=117.77 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=84.0
Q ss_pred CCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC-------CCccH
Q 031293 16 DKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG-------VKPRD 85 (162)
Q Consensus 16 ~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~-------~~~~~ 85 (162)
..+|+|.+..+..+ +.++.++||||| .++...+....+.+|++++|+|+.++ +..+.
T Consensus 66 ~~~giTi~~~~~~~~~~~~~~~iiDtpG~-------------~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt 132 (435)
T 1jny_A 66 RERGVTINLTFMRFETKKYFFTIIDAPGH-------------RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQT 132 (435)
T ss_dssp -----------CEEECSSCEEEECCCSSS-------------TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHH
T ss_pred HhcCceeEeeEEEEecCCeEEEEEECCCc-------------HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHH
Confidence 36788887765433 567999999999 66677777888899999999999887 66677
Q ss_pred HHHHHHHHHhCC-ceEEEEeccCCCC----cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293 86 HELISLMERSQT-KYQVVLTKTDTVF----PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 86 ~~~~~~l~~~~~-~~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~ 148 (162)
.+++..+...++ |+++++||+|+.+ +.......+.+++.+...+.. ..+++++||++|.|+.+
T Consensus 133 ~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 133 REHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp HHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 777777777776 4899999999986 233455556677766655432 36899999999999873
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=8.4e-17 Score=105.43 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=75.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
|+|+|++. ....+++.+|++........ ...+.++||||+.. +......++ ..+|++++|+|..
T Consensus 18 li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~---~~~~~~i~v~d~~ 83 (166)
T 3q72_A 18 LARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG----------GRWLPGHCM---AMGDAYVIVYSVT 83 (166)
T ss_dssp HHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC----------------------------CCEEEEEEETT
T ss_pred HHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCcc----------chhhhhhhh---hhCCEEEEEEECC
Confidence 57888887 45667788888875443222 23478999999822 233333443 3459999999987
Q ss_pred CCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 79 WGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 79 ~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+.+-.. ..++..+.. .++|+++|+||+|+.+...... +..+......+ .+++++||++|.|+++++++|
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 84 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV--DEGRACAVVFD---CKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp CHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH--HHHHHHHHHTT---CEEEECBGGGTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH--HHHHHHHHHhC---CcEEEeccCCCCCHHHHHHHH
Confidence 5421111 122333332 3689999999999975432211 11222233333 489999999999999999999
Q ss_pred HHhhhh
Q 031293 154 SKIARF 159 (162)
Q Consensus 154 ~~~~~~ 159 (162)
.+.+..
T Consensus 159 ~~~~~~ 164 (166)
T 3q72_A 159 VRQIRL 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987754
No 47
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=109.04 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=82.2
Q ss_pred ChhcccCCC-CceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 1 MLNALTRQW-GVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 1 lin~L~~~~-~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
|+|+|++.. ......++.|. ....... +.++.++||||+... ......+ ...+|++++|+|+.
T Consensus 37 li~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~d~~ 101 (190)
T 2h57_A 37 IINKLKPSNAQSQNILPTIGF--SIEKFKSSSLSFTVFDMSGQGRY----------RNLWEHY---YKEGQAIIFVIDSS 101 (190)
T ss_dssp HHHHTSCGGGCCSSCCCCSSE--EEEEEECSSCEEEEEEECCSTTT----------GGGGGGG---GGGCSEEEEEEETT
T ss_pred HHHHHhcCCCCCCCcCCccce--eEEEEEECCEEEEEEECCCCHHH----------HHHHHHH---HhcCCEEEEEEECC
Confidence 467887762 11122222221 2222222 557999999998322 2222233 34569999999997
Q ss_pred CCC--CccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH--hcCCCCCCeEEeecCCCCCHHHH
Q 031293 79 WGV--KPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 79 ~~~--~~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~Sa~~~~g~~~l 149 (162)
.+. .....++...+.. .++|+++|+||+|+.+....++ +.+.+. .......+++++||++|.|++++
T Consensus 102 ~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 102 DRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVK----VSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHH----HHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHH----HHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 642 1111222233333 3689999999999975432222 222332 11112358999999999999999
Q ss_pred HHHHHHhhhhh
Q 031293 150 RTVLSKIARFA 160 (162)
Q Consensus 150 ~~~i~~~~~~~ 160 (162)
+++|.+.++..
T Consensus 178 ~~~l~~~i~~~ 188 (190)
T 2h57_A 178 VDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999887644
No 48
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=1.7e-17 Score=125.15 Aligned_cols=140 Identities=23% Similarity=0.296 Sum_probs=91.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHH-HHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEEL-VKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+.++..||+|++... ..+ +..+.++||||+... ...++.+ ++.+......+|++++|+|
T Consensus 240 Lln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~------~~~ve~~gi~~~~~~~~~aD~vl~VvD 312 (462)
T 3geh_A 240 LLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET------SDQVEKIGVERSRQAANTADLVLLTID 312 (462)
T ss_dssp HHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------------CCCCSCSEEEEEEE
T ss_pred HHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc------hhHHHHHHHHHHhhhhhcCCEEEEEec
Confidence 57899887 46778999999986642 223 556999999998432 1111221 3445556677899999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+..+....+.+++..+. ..|+++|+||+|+.+..... .+... ....+++++||++|.|+++++++|.+.
T Consensus 313 ~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~--------~~~~~-~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 313 AATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT--------SLEYP-ENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp TTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST--------TCCCC-TTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH--------HHHHh-ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 99887776666666554 47999999999998654321 01111 123589999999999999999999987
Q ss_pred hh
Q 031293 157 AR 158 (162)
Q Consensus 157 ~~ 158 (162)
+.
T Consensus 382 ~~ 383 (462)
T 3geh_A 382 VQ 383 (462)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.3e-17 Score=109.63 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=89.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+.+|.+........+ .++.++||||.... ......++. .+|++++|+|+
T Consensus 39 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~iilV~d~ 105 (192)
T 2fg5_A 39 IVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF----------HSLAPMYYR---GSAAAVIVYDI 105 (192)
T ss_dssp HHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------GGGTHHHHT---TCSEEEEEEET
T ss_pred HHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------HhhhHHhhc---cCCEEEEEEeC
Confidence 578887773334566777777655544442 35899999997321 223334433 45999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+..... .+..++.+...+ .+++++||++|.|+++++++|
T Consensus 106 ~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 106 TKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDAKEYAESIG---AIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp TCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTTT---CEEEECBTTTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHH
Confidence 76432211 2233444433 68999999999996422211 123333444333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 181 ~~~i~ 185 (192)
T 2fg5_A 181 SRQIP 185 (192)
T ss_dssp HHTCC
T ss_pred HHHHH
Confidence 88664
No 50
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=3.8e-17 Score=126.46 Aligned_cols=114 Identities=22% Similarity=0.349 Sum_probs=82.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~ 111 (162)
.+.++|||||.. +.....+..+.+|++++|+|+.+++..++.+.+..+...++|+++|+||+|+...
T Consensus 71 ~i~liDTPGhe~-------------F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~ 137 (594)
T 1g7s_A 71 GLFFIDTPGHEA-------------FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG 137 (594)
T ss_dssp EEEEECCCTTSC-------------CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTT
T ss_pred CEEEEECCCcHH-------------HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccc
Confidence 389999999932 2222234456789999999999999888888888888889999999999999631
Q ss_pred -----------------HHH----HHHHHHHHHHHHhcC------------CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 112 -----------------IDV----ARRAMQIEESLKANN------------SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 112 -----------------~~~----~~~~~~~~~~~~~~~------------~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
..+ .+....+.+.+...+ ....+++++||++|.|+++|+++|...++
T Consensus 138 ~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 138 WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 111 111222223332221 12348999999999999999999987654
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.3e-16 Score=104.58 Aligned_cols=139 Identities=16% Similarity=0.138 Sum_probs=82.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++. ........|.++.+.. .+..+. ++.++||||+ +.+..........+|++++|+
T Consensus 26 li~~l~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~ 91 (180)
T 2g6b_A 26 LLVRFKDG-AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ-------------ERFRSVTHAYYRDAHALLLLY 91 (180)
T ss_dssp HHHHHHHS-CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------------CCGGGCSEEEEEE
T ss_pred HHHHHHhC-CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc-------------HHHHHHHHHHccCCCEEEEEE
Confidence 46777766 2322233444444433 233332 5889999998 222222223345679999999
Q ss_pred ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-.. ..++..+.. .++|+++|+||+|+.+...... +..++.....+ .+++++||++|.|+++++.
T Consensus 92 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 92 DVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR--EDGEKLAKEYG---LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH--HHHHHHHHHHT---CCEEECCTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHH
Confidence 9876432111 223344433 4689999999999975332110 11222223232 4899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 167 ~l~~~~~ 173 (180)
T 2g6b_A 167 AIAKELK 173 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 52
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.67 E-value=1.6e-16 Score=120.32 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC-------CccHH
Q 031293 17 KPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV-------KPRDH 86 (162)
Q Consensus 17 ~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~-------~~~~~ 86 (162)
.+|+|.+..+ +.. +.++.++||||| +.+...+..+.+.+|++++|+|+.++. ..+..
T Consensus 104 ~~giTi~~~~~~~~~~~~~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~ 170 (467)
T 1r5b_A 104 EKGKTVEVGRAYFETEHRRFSLLDAPGH-------------KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTR 170 (467)
T ss_dssp ---------CCEEECSSEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHH
T ss_pred hcCceEEeeeEEEecCCeEEEEEECCCc-------------HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHH
Confidence 5677876664 333 456999999999 677788888888999999999998864 24667
Q ss_pred HHHHHHHHhCCc-eEEEEeccCCCC----cHHHHHHHHHHHHHHHhc-CCC---CCCeEEeecCCCCCHHHH
Q 031293 87 ELISLMERSQTK-YQVVLTKTDTVF----PIDVARRAMQIEESLKAN-NSL---VQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 87 ~~~~~l~~~~~~-~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~-~~~---~~~i~~~Sa~~~~g~~~l 149 (162)
+++..+...++| +++|+||+|+.. +.......+.+.+.+... +.. ..+++++||++|.|++++
T Consensus 171 e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 171 EHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 777777777898 999999999964 233445555566665544 322 357999999999998764
No 53
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.67 E-value=9.6e-16 Score=104.58 Aligned_cols=139 Identities=19% Similarity=0.301 Sum_probs=84.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC----CceEEEcCCCCcccccCHHHHHHHHH-HHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. .....++++.+...+..+ .++.+|||||+ +.+.. +...+ .+.++++++|+
T Consensus 23 li~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~---~~~~~~~i~v~ 86 (214)
T 2fh5_B 23 LFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH----------ESLRFQLLDRF---KSSARAVVFVV 86 (214)
T ss_dssp HHHHHHHSC---CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCC----------HHHHHHHHHHH---GGGEEEEEEEE
T ss_pred HHHHHhCCC---cccccCCcceeeEEEEecCCCccEEEEEECCCC----------hhHHHHHHHHH---HhhCCEEEEEE
Confidence 467777662 223344444444444443 35999999999 22233 34444 34569999999
Q ss_pred ecCCCCCccHHHHH----HHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh-------------------
Q 031293 76 DTKWGVKPRDHELI----SLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA------------------- 127 (162)
Q Consensus 76 d~~~~~~~~~~~~~----~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------------------- 127 (162)
|+... ........ ..+.. .++|+++|+||+|+.+........+.+.+.+..
T Consensus 87 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~ 165 (214)
T 2fh5_B 87 DSAAF-QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAP 165 (214)
T ss_dssp ETTTH-HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------C
T ss_pred ECCCc-CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcccc
Confidence 98751 11111222 22221 258999999999998655455555555554441
Q ss_pred cCCC-------------CCCeEEeecCCC------CCHHHHHHHHHHh
Q 031293 128 NNSL-------------VQPVMMVSSKSG------AGIRSLRTVLSKI 156 (162)
Q Consensus 128 ~~~~-------------~~~i~~~Sa~~~------~g~~~l~~~i~~~ 156 (162)
.... ..+++++||++| .|+++++++|.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 166 AQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0111 357999999999 9999999999875
No 54
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.67 E-value=6.6e-17 Score=107.84 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=85.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++. ....+.+++|.+.....+. +.++.++||||+.. +......++. .+|++++|+|+..+
T Consensus 32 L~~~l~~~-~~~~~~~t~g~~~~~~~~~-~~~l~i~Dt~G~~~----------~~~~~~~~~~---~~~~~i~v~d~~~~ 96 (181)
T 1fzq_A 32 LLKQLASE-DISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRK----------IRPYWRSYFE---NTDILIYVIDSADR 96 (181)
T ss_dssp HHHHHCCS-CCEEEEEETTEEEEEEEET-TEEEEEEECSSCGG----------GHHHHHHHHT---TCSEEEEEEETTCG
T ss_pred HHHHHhcC-CCCcccCcCCeEEEEEEEC-CEEEEEEECCCCHH----------HHHHHHHHhC---CCCEEEEEEECcCH
Confidence 46777776 4455666666543222121 45689999999822 2334444543 45999999998764
Q ss_pred CCccH-HHHHH-HHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 81 VKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 81 ~~~~~-~~~~~-~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+-.. ..++. .+. ..++|+++|+||+|+.+....++ +.+.++. ......+++++||++|.|+++++++|
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 97 KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE----IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp GGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHH----HHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 22111 11222 222 13689999999999975432222 2222221 11123478999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 173 ~~~~~ 177 (181)
T 1fzq_A 173 CKNVN 177 (181)
T ss_dssp HHTC-
T ss_pred HHHHH
Confidence 88664
No 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.67 E-value=1.5e-16 Score=105.33 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=85.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+.....+..+. .+.++||||+... ......++. .+|++++|+|+
T Consensus 31 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~ 97 (179)
T 1z0f_A 31 LLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF----------RAVTRSYYR---GAAGALMVYDI 97 (179)
T ss_dssp HHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT----------CHHHHHHHH---TCSEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh----------hhhHHHHhc---cCCEEEEEEeC
Confidence 4677777632222334444444444444432 5899999998321 233444443 35999999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+... ..++..+.. .+.|+++|+||+|+.+..... .+..++.+...+ .+++++||++|.|+++++.+|
T Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 98 TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAEENG---LLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence 76432212 123333333 368899999999996432211 122333334333 489999999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 173 ~~~i 176 (179)
T 1z0f_A 173 AKKI 176 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 56
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.67 E-value=4.4e-16 Score=104.92 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=83.0
Q ss_pred ChhcccCCCCceec--cCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRT--SDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~--~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++.. ...+ .++.|.+. ..+.. +.++.++||||+... ......+ .+.+|++++|+|+
T Consensus 33 l~~~l~~~~-~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~D~ 96 (199)
T 4bas_A 33 IINQVKPAQ-SSSKHITATVGYNV--ETFEKGRVAFTVFDMGGAKKF----------RGLWETY---YDNIDAVIFVVDS 96 (199)
T ss_dssp HHHHHSCCC-----CCCCCSSEEE--EEEEETTEEEEEEEECCSGGG----------GGGGGGG---CTTCSEEEEEEET
T ss_pred HHHHHhcCC-CcccccccccceeE--EEEEeCCEEEEEEECCCCHhH----------HHHHHHH---HhcCCEEEEEEEC
Confidence 578888773 3333 44444322 12222 446899999998221 2222233 3567999999999
Q ss_pred CCCCCccH-HHHHHHHHHh-----------CCceEEEEeccCCCCcHHHHHHHHHHHHH-H-HhcCCCCCCeEEeecCCC
Q 031293 78 KWGVKPRD-HELISLMERS-----------QTKYQVVLTKTDTVFPIDVARRAMQIEES-L-KANNSLVQPVMMVSSKSG 143 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~-----------~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~Sa~~~ 143 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+.....+..+.+... + .. ...+++++||++|
T Consensus 97 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g 173 (199)
T 4bas_A 97 SDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD---HPFVIFASNGLKG 173 (199)
T ss_dssp TCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT---SCEEEEECBTTTT
T ss_pred CcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC---CeeEEEEeeCCCc
Confidence 86532111 1223322222 78999999999998653332222222211 1 21 2358999999999
Q ss_pred CCHHHHHHHHHHhhh
Q 031293 144 AGIRSLRTVLSKIAR 158 (162)
Q Consensus 144 ~g~~~l~~~i~~~~~ 158 (162)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 174 TGVHEGFSWLQETAS 188 (199)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988664
No 57
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.67 E-value=1.5e-16 Score=105.68 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=83.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ .++.++||||+... ......++. .+|++++|+|+
T Consensus 28 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~ 94 (181)
T 2efe_B 28 LVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY----------HSLAPMYYR---GAAAAIIVFDV 94 (181)
T ss_dssp HHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG----------GGGTHHHHT---TCSEEEEEEET
T ss_pred HHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh----------hhhhHHHhc---cCCEEEEEEEC
Confidence 467777662211122233333333333333 35899999998321 223334433 45999999998
Q ss_pred CCCCCc-cHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKP-RDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~-~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+- ....++..+... ++|+++|+||+|+.+..... .+..++.....+ .+++++||++|.|+++++.+|
T Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 95 TNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQENG---LFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHHHTT---CEEEECCSSSCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC--HHHHHHHHHHcC---CEEEEEECCCCCCHHHHHHHH
Confidence 764321 122344444433 68899999999997533211 122333333333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 170 ~~~~~ 174 (181)
T 2efe_B 170 ARRLP 174 (181)
T ss_dssp HHTCC
T ss_pred HHHHH
Confidence 87654
No 58
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.67 E-value=2e-16 Score=105.62 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=83.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++.. .....++.|.+. ..... +.++.++||||+ ..+........+.+|++++|+|+..
T Consensus 34 l~~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~ 97 (186)
T 1ksh_A 34 ILKKFNGED-VDTISPTLGFNI--KTLEHRGFKLNIWDVGGQ-------------KSLRSYWRNYFESTDGLIWVVDSAD 97 (186)
T ss_dssp HHHHHTTCC-CSSCCCCSSEEE--EEEEETTEEEEEEEECCS-------------HHHHTTGGGGCTTCSEEEEEEETTC
T ss_pred HHHHHhcCC-CCcccccCccce--EEEEECCEEEEEEECCCC-------------HhHHHHHHHHhcCCCEEEEEEECcC
Confidence 467888773 333333444332 12222 456899999999 3322222233456799999999976
Q ss_pred CCCccH-HHHHH-HHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 80 GVKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 80 ~~~~~~-~~~~~-~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+.+-.. ..++. .+.. .++|+++|+||+|+.+.....+ +.+.+.. ......+++++||++|.|+++++++
T Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 173 (186)
T 1ksh_A 98 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA----IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDW 173 (186)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHH----HHHHhChhhccCCceEEEEeeCCCCCCHHHHHHH
Confidence 532211 12222 2222 3689999999999976433222 2222221 1122358999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 174 l~~~i~ 179 (186)
T 1ksh_A 174 LLDDIS 179 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 59
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=107.55 Aligned_cols=140 Identities=15% Similarity=0.133 Sum_probs=81.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+.....+..+. ++.++||||+.. +......++. .+|++++|+|+
T Consensus 42 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~---~~d~iilV~D~ 108 (192)
T 2il1_A 42 LMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER----------FNSITSAYYR---SAKGIILVYDI 108 (192)
T ss_dssp HHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHHHHH---HCSEEEEEEET
T ss_pred HHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH----------HHHHHHHHhc---CCCEEEEEEEC
Confidence 5778877632222233333333333344433 589999999822 2333444443 45999999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+... ..++..+.. .++|+++|+||+|+.+..... .+..++...... ..+++++||++|.|+++++++|
T Consensus 109 ~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 109 TKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFAQQIT--GMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHTST--TCEEEECBTTTTBSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHHHHHHhcC--CCeEEEEeCCCCCCHHHHHHHH
Confidence 76432222 223344433 368999999999986432211 112233333221 2589999999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 185 ~~~i 188 (192)
T 2il1_A 185 VDDI 188 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 60
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.66 E-value=4.5e-19 Score=135.44 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=100.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. . ......||+|+++..+.. +.++.+|||||| +.+.....+....+|++++|+|
T Consensus 20 Ll~~L~~~-~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh-------------e~f~~~~~~~~~~aD~vILVVD 84 (537)
T 3izy_P 20 LLDKLRKT-Q-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH-------------AAFSAMRARGTQVTDIVILVVA 84 (537)
T ss_dssp HHHHHHHH-H-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS-------------CCTTTSBBSSSBSBSSCEEECB
T ss_pred HHHHHhCC-C-cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh-------------HHHHHHHHHHHccCCEEEEEEE
Confidence 46777766 2 234567888887776543 446999999999 3344444455677899999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHH---HHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEES---LKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
+.++...++.+++..+...++|+++|+||+|+.+.... ...+.+.+. +... ....+++++||++|.|+++|+++|
T Consensus 85 a~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~-~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 85 ADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDY-GGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp SSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCS-SSSEEECCCCSSSSCSSHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH-HHHHHHHhhhhhHHhc-CCCceEEEEECCCCCCchhHHHHH
Confidence 99999898989888888889999999999998742210 000111111 0111 112479999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
...++
T Consensus 163 ~~l~~ 167 (537)
T 3izy_P 163 IALAE 167 (537)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 88764
No 61
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=9.9e-17 Score=107.32 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=83.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++.. .....++.|.+.....+ -+.++.++||||+.. +......++ ..+|++++|+|+..+
T Consensus 32 l~~~l~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~----------~~~~~~~~~---~~~d~ii~v~d~~~~ 96 (187)
T 1zj6_A 32 ILYQFSMNE-VVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES----------LRSSWNTYY---TNTEFVIVVVDSTDR 96 (187)
T ss_dssp HHHHHHTTS-CEEEECCSCSSCEEEEE-TTEEEEEEECCC--------------CGGGHHHH---TTCCEEEEEEETTCT
T ss_pred HHHHHhcCC-CCcCcCCCccceEEEEE-CCEEEEEEECCCCHh----------HHHHHHHHh---cCCCEEEEEEeCCCH
Confidence 477888663 33555555544322111 145689999999822 122334444 346999999999875
Q ss_pred CCccH-HHHHH-HHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 81 VKPRD-HELIS-LMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 81 ~~~~~-~~~~~-~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+-.. ..++. .+.. .+.|+++|+||+|+.+.....+ +.+.+.. ......+++++||++|.|+++++++|
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 97 ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH----HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH----HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence 32222 22333 3322 4689999999999975322222 2222221 11223489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 173 ~~~~~ 177 (187)
T 1zj6_A 173 MSRLK 177 (187)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88664
No 62
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.66 E-value=1.5e-16 Score=115.79 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=93.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+++.+|++|..... +.++ ..+.++||||+.+... .+..+...+++....++++++|+|
T Consensus 174 Lln~L~~~--~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~------~~~~l~~~fl~~i~~~d~ll~VvD 245 (342)
T 1lnz_A 174 LLSVVSSA--KPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH------QGVGLGHQFLRHIERTRVIVHVID 245 (342)
T ss_dssp HHHHSEEE--CCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT------CTTTTHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHcC--CCccccCCccccCceEEEEEeCCCceEEEecCCCCccccc------ccchhHHHHHHHHHhccEEEEEEE
Confidence 57888887 3567889998876654 3333 5799999999843210 011233444555556799999999
Q ss_pred cCCC---CCccH-HHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 77 TKWG---VKPRD-HELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 77 ~~~~---~~~~~-~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
+... -...+ ..+...+.. .++|+++|+||+|+.+..+ ..+.+.+.+ .. ..+++++||+++.|++
T Consensus 246 ~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l---~~-~~~v~~iSA~tg~gi~ 318 (342)
T 1lnz_A 246 MSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKL---TD-DYPVFPISAVTREGLR 318 (342)
T ss_dssp SSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHC---CS-CCCBCCCSSCCSSTTH
T ss_pred CCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHh---hc-CCCEEEEECCCCcCHH
Confidence 8651 11111 223445554 3689999999999985432 122333222 21 1589999999999999
Q ss_pred HHHHHHHHhhh
Q 031293 148 SLRTVLSKIAR 158 (162)
Q Consensus 148 ~l~~~i~~~~~ 158 (162)
+++.+|.+.+.
T Consensus 319 eL~~~l~~~l~ 329 (342)
T 1lnz_A 319 ELLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.66 E-value=5.2e-16 Score=105.05 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=84.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ .++.++||||+.. +......+ ...+|++++|+|+
T Consensus 24 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~---~~~~d~ii~v~d~ 90 (203)
T 1zbd_A 24 FLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER----------YRTITTAY---YRGAMGFILMYDI 90 (203)
T ss_dssp HHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHHTT---GGGCSEEEEEEET
T ss_pred HHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh----------hcchHHHh---hcCCCEEEEEEEC
Confidence 467887773222233444444443333332 3589999999822 13333333 3456999999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+.. .+.|+++|+||+|+.+...... +..++.....+ .+++++||++|.|+++++.+|
T Consensus 91 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 91 TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS--ERGRQLADHLG---FEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH--HHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHH
Confidence 76422111 223344443 3689999999999975322110 12222233233 489999999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 166 ~~~i 169 (203)
T 1zbd_A 166 VDVI 169 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8755
No 64
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=2.4e-16 Score=105.34 Aligned_cols=143 Identities=22% Similarity=0.257 Sum_probs=91.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..|++|.+.... .. +.++.++||||+........ . +.+...++.. ..++++++++|+
T Consensus 23 L~~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~---~~~~~~~~~~-~~~~~~i~v~d~ 95 (188)
T 2wjg_A 23 IFNALTGE--NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-D---EIIARDYIIN-EKPDLVVNIVDA 95 (188)
T ss_dssp HHHHHHTT--CEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH-H---HHHHHHHHHH-HCCSEEEEEEEG
T ss_pred HHHHHhCC--CccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH-H---HHHHHHHHhc-cCCCEEEEEecc
Confidence 57888887 35567788888765543 33 45689999999854321111 1 1223334332 236899999998
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
... .....++..+...+.|+++|+||+|+..........+.+.+ ..+ .+++++||++|.|++++++++.+.+
T Consensus 96 ~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~---~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 96 TAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILG---VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp GGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHT---SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhC---CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 751 22233455566668999999999998532211111122222 222 4899999999999999999998876
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 168 ~ 168 (188)
T 2wjg_A 168 K 168 (188)
T ss_dssp T
T ss_pred H
Confidence 5
No 65
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.65 E-value=1.4e-16 Score=120.29 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=87.9
Q ss_pred CCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-------cHH
Q 031293 17 KPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-------RDH 86 (162)
Q Consensus 17 ~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-------~~~ 86 (162)
.+|+|.+..+..+ +.++.++||||| +.+...+..+...+|++++|+|+.++... ++.
T Consensus 68 ~~GiTi~~~~~~~~~~~~~~~iiDtPGh-------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~ 134 (458)
T 1f60_A 68 ERGITIDIALWKFETPKYQVTVIDAPGH-------------RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR 134 (458)
T ss_dssp HTTCCCSCSCEEEECSSEEEEEEECCCC-------------TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH
T ss_pred hcCcEEEEEEEEEecCCceEEEEECCCc-------------HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH
Confidence 4778876655433 456999999999 66777888888899999999999875422 556
Q ss_pred HHHHHHHHhCCc-eEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCC--CCCeEEeecCCCCCHHH
Q 031293 87 ELISLMERSQTK-YQVVLTKTDTVF--PIDVARRAMQIEESLKANNSL--VQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 87 ~~~~~l~~~~~~-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~--~~~i~~~Sa~~~~g~~~ 148 (162)
+++..+...++| +++|+||+|+.+ +.......+.+++.+...+.. ..+++++||++|.|+++
T Consensus 135 ~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 135 EHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 666666667886 899999999983 344445556666665554421 36899999999999864
No 66
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.65 E-value=2.8e-16 Score=121.48 Aligned_cols=110 Identities=25% Similarity=0.254 Sum_probs=81.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~ 111 (162)
.+.++||||| .++..+..+..+.+|++++|+|+.++...++...+..+...++|+++|+||+|+...
T Consensus 74 ~inliDTPGh-------------~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 74 KLHLIDTPGH-------------VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EEEEECCCCS-------------GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEECCCc-------------HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 5889999999 333334444456679999999999988888877777677789999999999999754
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 112 IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
. .....+.+.+.+ +....+++++||++|.|+++++++|.+.++
T Consensus 141 ~-~~~v~~el~~~l---g~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 141 D-VDRVKKQIEEVL---GLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp C-HHHHHHHHHHTS---CCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred C-HHHHHHHHHHhh---CCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3 223333333322 222236999999999999999999987664
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.65 E-value=1.8e-16 Score=103.70 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHH-HHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISL-MER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~-l~~---~~~~~ivv~n 104 (162)
+.++.++||||+.. +......++ ..+|++++|+|+..+.+-.. ..++.. +.. .+.|+++|+|
T Consensus 43 ~~~~~i~Dt~G~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 43 NISFTVWDVGGQDK----------IRPLWRHYF---QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp SCEEEEEECCCCGG----------GHHHHHHHT---TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CEEEEEEEcCCChh----------hHHHHHHHh---ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 45699999999822 233444443 45699999999976421111 122222 221 2689999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
|+|+.+.....+ +.+.+.. ......+++++||++|.|+++++++|.+.+..
T Consensus 110 K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 110 KQDLPNAMNAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CTTSTTCCCHHH----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CcCCcCCCCHHH----HHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 999975432222 2222211 11122479999999999999999999987654
No 68
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.65 E-value=1.2e-16 Score=105.00 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=87.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+.+|.+........+ .++.++||||+... ......++. .+|++++|+|+
T Consensus 22 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~---~~~~~i~v~d~ 88 (170)
T 1z0j_A 22 IMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF----------RALAPMYYR---GSAAAIIVYDI 88 (170)
T ss_dssp HHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGTHHHHT---TCSEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh----------hcccHhhCc---CCCEEEEEEEC
Confidence 467777773334455666666554444443 35889999998221 223334433 35999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+... ..++..+... ..|+++|+||+|+.+...... +..+......+ .+++++||++|.|+++++++|
T Consensus 89 ~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 89 TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDAKDYADSIH---AIFVETSAKNAININELFIEI 163 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH--HHHHHHHHHcC---CEEEEEeCCCCcCHHHHHHHH
Confidence 76432222 2344444433 578999999999974322111 12222333333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 87653
No 69
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.65 E-value=6.9e-17 Score=107.62 Aligned_cols=137 Identities=16% Similarity=0.119 Sum_probs=85.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
|+|+|++.. .....+..|.+.....+ -+.++.++||||+... ......+ ...+|++++|+|+..+
T Consensus 37 li~~l~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~D~~~~ 101 (181)
T 2h17_A 37 ILYQFSMNE-VVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESL----------RSSWNTY---YTNTEFVIVVVDSTDR 101 (181)
T ss_dssp HHHHHHTTS-CEEEECCSSSSCEEEEE-TTEEEEEEEESSSGGG----------TCGGGGG---GTTCCEEEEEEETTCT
T ss_pred HHHHHhcCC-CCccCCcCceeeEEEEE-CCEEEEEEECCCCHhH----------HHHHHHH---hccCCEEEEEEECCCH
Confidence 578888773 46667777765432211 2456999999998321 2222233 3456999999999875
Q ss_pred CCccH-HHHH-HHHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 81 VKPRD-HELI-SLME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 81 ~~~~~-~~~~-~~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+-.. ..++ ..+. ..++|+++|+||+|+.+.....+ +.+.+.. ......+++++||++|.|+++++++|
T Consensus 102 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 102 ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE----ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHH----HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 32222 1223 3333 24689999999999975322222 2222211 11122479999999999999999998
Q ss_pred HHh
Q 031293 154 SKI 156 (162)
Q Consensus 154 ~~~ 156 (162)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 754
No 70
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=104.61 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=84.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. ......|+++.+.. .+..+. .+.++||||+... ......++. .+|++++|+
T Consensus 32 li~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~ 96 (196)
T 3tkl_A 32 LLLRFADDT--YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITSSYYR---GAHGIIVVY 96 (196)
T ss_dssp HHHHHHHSC--CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------CTTHHHHHT---TCSEEEEEE
T ss_pred HHHHHHcCC--CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh----------hhhHHHHHh---hCCEEEEEE
Confidence 467777762 22344455554443 334432 5889999997322 223344443 459999999
Q ss_pred ecCCCCCcc-HHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPR-DHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~-~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-. ...++..+... ++|+++|+||+|+.+...... +..+......+ .+++++||++|.|+++++.
T Consensus 97 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 97 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADSLG---IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CCEEEECTTTCTTHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHHHHHHHHcC---CcEEEEeCCCCCCHHHHHH
Confidence 987632111 12233444333 689999999999975432211 12222333333 4899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 172 ~l~~~i~ 178 (196)
T 3tkl_A 172 TMAAEIK 178 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 71
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.65 E-value=1.5e-16 Score=104.39 Aligned_cols=140 Identities=12% Similarity=0.047 Sum_probs=83.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ .++.++||||+... ......++ ..+|++++|+|+
T Consensus 22 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~---~~~d~~i~v~d~ 88 (170)
T 1r2q_A 22 LVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY----------HSLAPMYY---RGAQAAIVVYDI 88 (170)
T ss_dssp HHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHH---TTCSEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh----------hhhhHHhc---cCCCEEEEEEEC
Confidence 467777652222233445554444434432 35889999998321 22333443 345999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.++.... .+...+.....+ .+++++||++|.|+++++++|
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 89 TNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD--FQEAQSYADDNS---LLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHH
Confidence 76422111 2233333332 57899999999986432211 112223333333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 164 ~~~~~ 168 (170)
T 1r2q_A 164 AKKLP 168 (170)
T ss_dssp HHTSC
T ss_pred HHHHh
Confidence 87653
No 72
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=2.4e-16 Score=105.60 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=82.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++........+..|.+ ...... +.++.++||||+ +.+......++ ..+|++++|+|+..
T Consensus 38 li~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~---~~~d~ii~v~D~~~ 102 (188)
T 1zd9_A 38 FVNVIASGQFNEDMIPTVGFN--MRKITKGNVTIKLWDIGGQ----------PRFRSMWERYC---RGVSAIVYMVDAAD 102 (188)
T ss_dssp HHHHHHHSCCCCSCCCCCSEE--EEEEEETTEEEEEEEECCS----------HHHHTTHHHHH---TTCSEEEEEEETTC
T ss_pred HHHHHHcCCCCCccCCCCcee--EEEEEeCCEEEEEEECCCC----------HhHHHHHHHHH---ccCCEEEEEEECCC
Confidence 467777652222223333322 222222 446899999998 22333444444 44699999999876
Q ss_pred CCCcc--HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 80 GVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 80 ~~~~~--~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+.+-. ..++...+.. .++|+++|+||+|+.......+..+.+. .........+++++||++|.|+++++++|.
T Consensus 103 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 103 QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN--LSAIQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT--GGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhC--hhhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 42111 1222233322 4689999999999975422222111111 111111234789999999999999999999
Q ss_pred Hhhhh
Q 031293 155 KIARF 159 (162)
Q Consensus 155 ~~~~~ 159 (162)
+.+..
T Consensus 181 ~~~~~ 185 (188)
T 1zd9_A 181 QHSKS 185 (188)
T ss_dssp HTCC-
T ss_pred HHHHh
Confidence 87653
No 73
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.64 E-value=2.1e-15 Score=99.71 Aligned_cols=139 Identities=9% Similarity=-0.012 Sum_probs=80.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+.....+..+. .+.++||||+.. +......+ .+.+|++++|+|.
T Consensus 23 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~---~~~~~~~i~v~d~ 89 (177)
T 1wms_A 23 LMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER----------FRSLRTPF---YRGSDCCLLTFSV 89 (177)
T ss_dssp HHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG----------GHHHHGGG---GTTCSEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhHHHH---HhcCCEEEEEEEC
Confidence 4677776622222223333332233334433 689999999822 12333333 3456999999998
Q ss_pred CCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293 78 KWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l 149 (162)
..+.+-.. ..++..+.. .++|+++|+||+|+....... +..++..... ...+++++||++|.|++++
T Consensus 90 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 90 DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST---EEAQAWCRDN--GDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCH---HHHHHHHHHT--TCCCEEECCTTTCTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCH---HHHHHHHHhc--CCceEEEEeCCCCCCHHHH
Confidence 76432111 123333321 467999999999997322111 1222333322 2258999999999999999
Q ss_pred HHHHHHhh
Q 031293 150 RTVLSKIA 157 (162)
Q Consensus 150 ~~~i~~~~ 157 (162)
++++.+.+
T Consensus 165 ~~~l~~~~ 172 (177)
T 1wms_A 165 FEEAVRRV 172 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 74
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.64 E-value=6.7e-17 Score=108.29 Aligned_cols=141 Identities=20% Similarity=0.155 Sum_probs=83.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++. ......++.|.+. ..... +.++.++||||+... ...... ..+.+|++++|+|+..
T Consensus 38 li~~l~~~-~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~---~~~~~d~ii~v~d~~~ 101 (189)
T 2x77_A 38 ILYRLHLG-DVVTTVPTVGVNL--ETLQYKNISFEVWDLGGQTGV----------RPYWRC---YFSDTDAVIYVVDSTD 101 (189)
T ss_dssp HHHHTCCS-CCEEECSSTTCCE--EEEEETTEEEEEEEECCSSSS----------CCCCSS---SSTTCCEEEEEEETTC
T ss_pred HHHHHHcC-CCCCcCCCCceEE--EEEEECCEEEEEEECCCCHhH----------HHHHHH---HhhcCCEEEEEEeCCC
Confidence 46777666 2333344444322 12222 456899999998332 111112 2345799999999986
Q ss_pred CCCcc--HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH--hcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 80 GVKPR--DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK--ANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 80 ~~~~~--~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+.+-. ..++...+.. .++|+++|+||+|+.+.....+ +.+.+. .......+++++||++|.|+++++++
T Consensus 102 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 102 RDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAE----IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp CTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHH----HHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHH----HHHHhChhhccCCceEEEEccCCCccCHHHHHHH
Confidence 53222 1222223322 3689999999999976432222 222221 11122247999999999999999999
Q ss_pred HHHhhhhhc
Q 031293 153 LSKIARFAK 161 (162)
Q Consensus 153 i~~~~~~~k 161 (162)
|.+.+...+
T Consensus 178 l~~~i~~~~ 186 (189)
T 2x77_A 178 LVERLREQG 186 (189)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcc
Confidence 998776443
No 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.64 E-value=2.2e-16 Score=103.63 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=83.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+.+|.+.....+..+. ++.++||||+... ......++. .+|++++|+|+
T Consensus 19 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~~---~~d~~i~v~d~ 85 (170)
T 1ek0_A 19 IVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF----------ASLAPXYYR---NAQAALVVYDV 85 (170)
T ss_dssp HHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGHHHHHT---TCSEEEEEEET
T ss_pred HHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhh----------hhhhhhhhc---cCcEEEEEEec
Confidence 4677776632223344455444444444433 5899999998321 233444443 45999999999
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCc---HHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFP---IDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
..+.+-.. ..++..+.. .+.|+++|+||+|+.+. ..... +..++.....+ .+++++||++|.|+++++
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 86 TKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAR--EEGEKLAEEKG---LLFFETSAKTGENVNDVF 160 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCH--HHHHHHHHHHT---CEEEECCTTTCTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHH
Confidence 86422211 122333332 26889999999998743 11110 11222222232 489999999999999999
Q ss_pred HHHHHhh
Q 031293 151 TVLSKIA 157 (162)
Q Consensus 151 ~~i~~~~ 157 (162)
.+|.+.+
T Consensus 161 ~~l~~~i 167 (170)
T 1ek0_A 161 LGIGEKI 167 (170)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9998765
No 76
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.64 E-value=9.7e-16 Score=102.60 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=70.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++||||+.. +......+ .+.+|++++|+|+..+.+... ..++..+.. .++|+++|+||+
T Consensus 71 ~~~l~Dt~G~~~----------~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 71 HLQLWDTAGLER----------FRSLTTAF---FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEECCSGG----------GHHHHHHT---TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEeCCCcHH----------HHHHHHHH---HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 589999999922 13333333 455699999999876432222 233343433 368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+..... .+..++.....+ .+++++||++|.|+++++.+|.+.+.
T Consensus 138 Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 138 DLEDQRAVK--EEEARELAEKYG---IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp TCGGGCCSC--HHHHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccccccC--HHHHHHHHHHcC---CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 996432211 012223333333 48999999999999999999987653
No 77
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=104.56 Aligned_cols=138 Identities=11% Similarity=0.069 Sum_probs=82.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. .. ....|+.+.+... +..+ ..+.++||||+... ......+ ...+|++++|+
T Consensus 25 l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~ 89 (181)
T 3tw8_B 25 LLLRFADNT-FS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF----------RTITSTY---YRGTHGVIVVY 89 (181)
T ss_dssp HHHHHCSCC-----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC----------SSCCGGG---GTTCSEEEEEE
T ss_pred HHHHHhcCC-CC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh----------hhhHHHH---hccCCEEEEEE
Confidence 578888772 22 4445555544433 3333 35889999997322 1112222 34569999999
Q ss_pred ecCCCCCccH-HHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
|+..+.+... ..++..+... ++|+++|+||+|+.+...... +.........+ .+++++||++|.|+++++++
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 90 DVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET--EDAYKFAGQMG---IQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CCEEECBTTTTBSHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHH
Confidence 9976422211 1233333333 489999999999864332111 11222233333 48999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 165 l~~~~~ 170 (181)
T 3tw8_B 165 ITELVL 170 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988664
No 78
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.64 E-value=8e-16 Score=101.03 Aligned_cols=109 Identities=17% Similarity=0.061 Sum_probs=67.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
.+.++||||+ ..+........+.+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+|
T Consensus 56 ~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 56 NLAIWDTAGQ-------------ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp EEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred EEEEEECCCc-------------HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 4789999998 2222222223456799999999876422111 123333332 4689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+..... .+..++.....+ .+++++||++|.|+++++++|.+.+.
T Consensus 123 l~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 123 LEKERHVS--IQEAESYAESVG---AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp GGGGCCSC--HHHHHHHHHHTT---CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccccC--HHHHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 97432211 112233333333 48999999999999999999987653
No 79
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.64 E-value=9.4e-17 Score=114.89 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=80.6
Q ss_pred CceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHhCCceEEEEecc
Q 031293 31 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~~~~~ivv~nK~ 106 (162)
.++.+|||||++.... +......+...+..|+.... +++++|+|+..++...+. .++..+...+.|+++|+||+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN--CLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTT--EEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCC--eEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence 5799999999975432 23333345666777766431 355579999887766664 46666666689999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+.... ..+.++..+........+++++||++|.|+++++++|.+..+
T Consensus 203 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 203 DLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp GGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred ccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 99854321 011121111011011247889999999999999999887544
No 80
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.63 E-value=5.6e-15 Score=106.33 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=90.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe----CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc-----Cccccee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL----GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-----RVSLKRV 71 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~----~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v 71 (162)
|+|+|++. ....++..+|+|.+..+... +.++.+|||||+ ..+...+... .+.+|++
T Consensus 19 Li~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~~ad~v 84 (307)
T 3r7w_A 19 MRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ-------------DVFMENYFTKQKDHIFQMVQVL 84 (307)
T ss_dssp HHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS-------------HHHHHHHHTTTHHHHHTTCSEE
T ss_pred HHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCc-------------HHHhhhhhhhHHHHHhccCCEE
Confidence 47787777 34567778999987776543 235899999998 3332222211 1356999
Q ss_pred EEEeecCCCCCccHHH-HHHHHHH-----hCCceEEEEeccCCCCcHHHH----HHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 72 CLLIDTKWGVKPRDHE-LISLMER-----SQTKYQVVLTKTDTVFPIDVA----RRAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 72 i~vid~~~~~~~~~~~-~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
++|+|+..+.+-.+.. +..++.. .++|+++|+||+|+.+..... ...+.+++.....+....+++++||+
T Consensus 85 i~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~ 164 (307)
T 3r7w_A 85 IHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW 164 (307)
T ss_dssp EEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTT
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeec
Confidence 9999998754333332 2233322 278999999999998643332 22344555555554223689999999
Q ss_pred CCCCHHHHHHHHHH
Q 031293 142 SGAGIRSLRTVLSK 155 (162)
Q Consensus 142 ~~~g~~~l~~~i~~ 155 (162)
+ .|+.+++..+.+
T Consensus 165 ~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 165 D-ESLYKAWSQIVC 177 (307)
T ss_dssp S-SHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHH
Confidence 9 788887777654
No 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.63 E-value=3.5e-16 Score=102.69 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=78.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. . .....|+.+.+.. ....+. ++.++||||+... ......++ ..+|++++|+
T Consensus 19 li~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~---~~~d~~i~v~ 83 (170)
T 1g16_A 19 LLVRFVEDK-F-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTITTAYY---RGAMGIILVY 83 (170)
T ss_dssp HHHHHHHCC-C-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCCHHHH---TTEEEEEEEE
T ss_pred HHHHHHhCC-C-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh----------hhhHHHHh---ccCCEEEEEE
Confidence 467777662 2 2233343333332 333332 5889999998332 11223333 3459999999
Q ss_pred ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-.. ..++..+.. .+.|+++|+||+|+.......+ ..++.....+ .+++++||++|.|+++++.
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 84 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD---QGEALAKELG---IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHH---HHHHHHHHHT---CCEEECBTTTTBSHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHH---HHHHHHHHcC---CeEEEEECCCCCCHHHHHH
Confidence 9876422111 233344433 2689999999999953222112 1222223233 4899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 158 ~l~~~~~ 164 (170)
T 1g16_A 158 TLAKLIQ 164 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988664
No 82
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.63 E-value=1.3e-15 Score=107.01 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=94.2
Q ss_pred ChhcccCCCCceeccCCCC-cceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPG-LTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g-~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ....++..|+ +|+.... ... +.++.+|||||+........ .....+...+....+.+|++++|+|
T Consensus 38 l~n~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~--~~~~~i~~~~~~~~~~~d~il~V~d 114 (260)
T 2xtp_A 38 AGNSILRK-QAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE--ALYKEVQRCYLLSAPGPHVLLLVTQ 114 (260)
T ss_dssp HHHHHHTS-CCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH--HHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHhCC-CCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH--HHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 57888887 3455555555 5654432 233 55799999999966533221 1111222333334566799999999
Q ss_pred cCCCCCccHHHHHHHHHHh-----CCceEEEEe-ccCCCCcHHHHHHH-----HHHHHHHHhcCCCC--CCeEEeecCCC
Q 031293 77 TKWGVKPRDHELISLMERS-----QTKYQVVLT-KTDTVFPIDVARRA-----MQIEESLKANNSLV--QPVMMVSSKSG 143 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~-----~~~~ivv~n-K~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~--~~i~~~Sa~~~ 143 (162)
+.. +...+..++..+... ..|.++++| |+|+.+.. ....+ +.+++.+...+... +..+++||++|
T Consensus 115 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 192 (260)
T 2xtp_A 115 LGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQD 192 (260)
T ss_dssp TTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccH
Confidence 985 666666666666654 568877787 99998543 22211 11222333332211 22278999999
Q ss_pred CCHHHHHHHHHHhhhh
Q 031293 144 AGIRSLRTVLSKIARF 159 (162)
Q Consensus 144 ~g~~~l~~~i~~~~~~ 159 (162)
.|+++++.+|.+.+..
T Consensus 193 ~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 193 DQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 83
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.63 E-value=2.4e-16 Score=105.64 Aligned_cols=140 Identities=11% Similarity=0.002 Sum_probs=84.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ .++.++||||+... ......+ ...+|++++|+|+
T Consensus 38 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~ii~v~d~ 104 (189)
T 2gf9_A 38 FLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY----------RTITTAY---YRGAMGFLLMYDI 104 (189)
T ss_dssp HHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS----------CCSGGGG---GTTCSEEEEEEET
T ss_pred HHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH----------hhhHHHh---ccCCCEEEEEEEC
Confidence 467777763222234444554443333332 35899999997332 1112222 3456999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+...... +..++.....+ .+++++||++|.|+++++++|
T Consensus 105 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 105 ANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPA--EDGRRLADDLG---FEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHH
Confidence 76421111 2344444443 689999999999974322110 12222333333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 180 ~~~i~ 184 (189)
T 2gf9_A 180 VDVIC 184 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 84
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.63 E-value=1.9e-16 Score=106.50 Aligned_cols=112 Identities=13% Similarity=-0.040 Sum_probs=70.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ...... ..+.+|++++|+|+..+.+-.. ..++..+... ++|+++|+||+|
T Consensus 72 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 138 (194)
T 3reg_A 72 ILHLWDTAGQEEY----------DRLRPL---SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138 (194)
T ss_dssp EEEEEEECCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGG
T ss_pred EEEEEECCCcHHH----------HHHhHh---hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 3689999998221 112222 2345699999999876432222 2244444443 689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+........+...+.....+. .+++++||++|.|+++++++|.+.+.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 139 LRKDGSDDVTKQEGDDLCQKLGC--VAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp GCCTTTTCCCHHHHHHHHHHHTC--SCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hccCCCCcccHHHHHHHHHhcCC--CEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 97431111111223333333332 34999999999999999999988764
No 85
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.63 E-value=4.6e-16 Score=119.06 Aligned_cols=81 Identities=22% Similarity=0.362 Sum_probs=62.4
Q ss_pred CCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH
Q 031293 18 PGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER 94 (162)
Q Consensus 18 ~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~ 94 (162)
+|+|..... +.. +.++.+|||||+ .++...+.+..+.+|++++|+|+..+....+..++..+..
T Consensus 66 ~GiTi~~~~~~~~~~~~~i~liDTPG~-------------~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~ 132 (528)
T 3tr5_A 66 RGISVTTSVMQFPYKDYLINLLDTPGH-------------ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL 132 (528)
T ss_dssp HCCSSSSSEEEEEETTEEEEEECCCCS-------------TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT
T ss_pred CCeeEEEeEEEEEeCCEEEEEEECCCc-------------hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 555543332 222 556999999999 3344455556667899999999999988888888888888
Q ss_pred hCCceEEEEeccCCCCc
Q 031293 95 SQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~ 111 (162)
.++|+++|+||+|+...
T Consensus 133 ~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 133 RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCCEEEEEECTTSCCS
T ss_pred cCCCEEEEEeCCCCccc
Confidence 89999999999999743
No 86
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.63 E-value=3.8e-18 Score=129.39 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=95.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|.+. ....+..+|+|.++..+.+ +.+++++||||| ..+.....++...+|++++|+|+
T Consensus 20 Ll~~L~~~--~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh-------------e~f~~~~~~~~~~aD~aILVVda 84 (501)
T 1zo1_I 20 LLEYIRST--KVASGEAGGITQHIGAYHVETENGMITFLDTPGH-------------AAFTSMRARGAQATDIVVLVVAA 84 (501)
T ss_dssp HHHHHHHH--HHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTT-------------TCCTTSBCSSSBSCSSEEEEEET
T ss_pred HHHHHHcC--CCccccCCCeeEeEEEEEEEECCEEEEEEECCCc-------------HHHHHHHHHHHhhCCEEEEEeec
Confidence 35566554 1223445788877665444 456999999999 33444445566778999999999
Q ss_pred CCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHH--HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 78 KWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEE--SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.++...++.+++..+...++|+++++||+|+.+... .+..+.+.+ .+........+++++||++|.|+++++++|..
T Consensus 85 ~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 85 DDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred ccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 998888888888888888999999999999974211 000000000 00001111258999999999999999999865
Q ss_pred h
Q 031293 156 I 156 (162)
Q Consensus 156 ~ 156 (162)
.
T Consensus 164 ~ 164 (501)
T 1zo1_I 164 Q 164 (501)
T ss_dssp T
T ss_pred h
Confidence 3
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=6.1e-16 Score=105.30 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=81.6
Q ss_pred ChhcccCCCCceeccCCCCcceEE--EEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTI--NFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~--~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++... .....|+.+.+. ..+..+. ++.++||||+... ......++ ..+|++++|+
T Consensus 36 li~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~---~~~d~ii~v~ 100 (213)
T 3cph_A 36 LLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF----------RTITTAYY---RGAMGIILVY 100 (213)
T ss_dssp HHHHHHHCCC--CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------TCCCHHHH---TTCSEEEEEE
T ss_pred HHHHHHhCCC--CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHHHHHHh---ccCCEEEEEE
Confidence 4677776622 223334444333 3334433 5899999998322 22233333 3459999999
Q ss_pred ecCCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-.. ..++..+... ++|+++|+||+|+......... ..+.....+ .+++++||++|.|+++++.
T Consensus 101 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 101 DVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ---GEALAKELG---IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHH---HHHHHHHHT---CCEEECBTTTTBSSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHH---HHHHHHHcC---CEEEEEeCCCCCCHHHHHH
Confidence 9876421111 2333444332 6899999999999533221111 222222232 4899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 175 ~l~~~~~ 181 (213)
T 3cph_A 175 TLAKLIQ 181 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 88
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.63 E-value=1.9e-16 Score=108.33 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=84.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-C---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-G---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++...........+.+.....+.. + ..+.++||||+... ......++ ..+|++++|+|
T Consensus 27 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~---~~~d~~i~v~d 93 (218)
T 4djt_A 27 YINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK----------AVLKDVYY---IGASGAILFFD 93 (218)
T ss_dssp HHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT----------SCCCHHHH---TTCSEEEEEEE
T ss_pred HHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh----------chHHHHHh---hcCCEEEEEEe
Confidence 57888866444445556665544433333 2 34899999998332 11222333 23599999999
Q ss_pred cCCCCCccHH-HHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 77 TKWGVKPRDH-ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 77 ~~~~~~~~~~-~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+..+.+..+. .++..+.. .++|+++|+||+|+.+...... +......... ..+++++||++|.|+++++.+
T Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 94 VTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK--KLVMEVLKGK---NYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp TTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH--HHHHHHTTTC---CCEEEEEBTTTTBTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHHc---CCcEEEEecCCCCCHHHHHHH
Confidence 9864322222 23333332 2589999999999975433221 1222233322 258999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 169 l~~~~~ 174 (218)
T 4djt_A 169 LARIFT 174 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988664
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.63 E-value=1.8e-16 Score=107.17 Aligned_cols=137 Identities=17% Similarity=0.160 Sum_probs=78.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++. ......++.+.+.. .... +.++.++||||+... ......++ +.+|++++|+|+..
T Consensus 41 Li~~l~~~-~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~---~~~d~~i~v~D~~~ 104 (198)
T 1f6b_A 41 LLHMLKDD-RLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQA----------RRVWKNYL---PAINGIVFLVDCAD 104 (198)
T ss_dssp HHHHHSCC-------CCCCCSCE--EEEETTEEEEEEEECC--------------CCGGGGGG---GGCSEEEEEEETTC
T ss_pred HHHHHhcC-CCCccCCCCCceeE--EEEECCEEEEEEECCCcHhh----------HHHHHHHH---hcCCEEEEEEECCC
Confidence 46777776 34444555555432 2333 346899999998221 22222333 35699999999976
Q ss_pred CCCccH-HHHHH-HHH---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcC--------------CCCCCeEEeec
Q 031293 80 GVKPRD-HELIS-LME---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN--------------SLVQPVMMVSS 140 (162)
Q Consensus 80 ~~~~~~-~~~~~-~l~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~~~Sa 140 (162)
+.+-.. ..++. .+. ..++|+++|+||+|+......+ .+++.+.... ....+++++||
T Consensus 105 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 105 HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE----RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHH----HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred HHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHH----HHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 421111 12222 222 1368999999999997422122 2333333211 12357999999
Q ss_pred CCCCCHHHHHHHHHHhh
Q 031293 141 KSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 141 ~~~~g~~~l~~~i~~~~ 157 (162)
++|.|+++++++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998654
No 90
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.62 E-value=2.2e-15 Score=100.53 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=81.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. .....++++.+... ...+. .+.++||||+.. +......++.. +|++++|+
T Consensus 20 li~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~---~~~~i~v~ 83 (189)
T 4dsu_A 20 LTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRDQYMRT---GEGFLCVF 83 (189)
T ss_dssp HHHHHHHSS---CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHHHHHHH---CSEEEEEE
T ss_pred HHHHHHhCC---CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH----------HHHHHHHHHhc---CCEEEEEE
Confidence 467787662 23444444443322 22222 377899999822 22334444433 49999999
Q ss_pred ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|...+.+-.. ..++..+.. .+.|+++|+||+|+.+.....+..+.+. ...+ .+++++||++|.|+++++
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~~~~---~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 84 AINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---RSYG---IPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH---HHHT---CCEEECCTTTCTTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH---HHcC---CeEEEEeCCCCCCHHHHH
Confidence 9876321111 122233322 3689999999999975433222222332 2232 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
.+|.+.+.
T Consensus 158 ~~l~~~~~ 165 (189)
T 4dsu_A 158 YTLVREIR 165 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988664
No 91
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.62 E-value=3.1e-16 Score=105.26 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=80.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+.....+..+. ++.++||||+... ......++. .+|++++|+|+
T Consensus 37 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~ii~v~d~ 103 (191)
T 2a5j_A 37 LLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSITRSYYR---GAAGALLVYDI 103 (191)
T ss_dssp HHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCCHHHHT---TCSEEEEEEET
T ss_pred HHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhh----------hhhHHHHhc---cCCEEEEEEEC
Confidence 4677776622122223334444444444433 5899999998322 122333433 45999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+...... +..++.....+ .+++++||++|.|+++++.+|
T Consensus 104 ~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 104 TRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKR--EEGEAFAREHG---LIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEEECTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence 76321111 2233444332 689999999999964222110 12222333333 489999999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 179 ~~~i 182 (191)
T 2a5j_A 179 AKEI 182 (191)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8755
No 92
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.62 E-value=1.4e-15 Score=100.81 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=76.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC----CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~----~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++........+..|.+.....+..+ ..+.++||||+ ..+........+.+|++++|+|
T Consensus 24 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d 90 (182)
T 1ky3_A 24 LMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYD 90 (182)
T ss_dssp HHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEE
T ss_pred HHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC-------------hHhhhhhHHHhhcCCEEEEEEE
Confidence 467777662212222233333333333332 25899999997 2222222233456799999999
Q ss_pred cCCCCCccH-HHHHHHHHH-------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 77 TKWGVKPRD-HELISLMER-------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 77 ~~~~~~~~~-~~~~~~l~~-------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
+..+.+-.. ..++..+.. .++|+++|+||+|+...... ...+...+..... ...+++++||++|.|+++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 91 VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSL--GDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHT--TSCCEEEEBTTTTBSHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhc--CCCeEEEEecCCCCCHHH
Confidence 876422111 122333221 46899999999999633210 0011222222212 225899999999999999
Q ss_pred HHHHHHHhhh
Q 031293 149 LRTVLSKIAR 158 (162)
Q Consensus 149 l~~~i~~~~~ 158 (162)
++.+|.+.+.
T Consensus 168 l~~~l~~~~~ 177 (182)
T 1ky3_A 168 AFEEIARSAL 177 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 93
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.62 E-value=8.4e-16 Score=103.83 Aligned_cols=142 Identities=18% Similarity=0.114 Sum_probs=79.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ ..+.++||||+... ......++. .+|++++|+|+
T Consensus 44 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~---~~d~iilv~d~ 110 (199)
T 2p5s_A 44 FLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF----------RSIAKSYFR---KADGVLLLYDV 110 (199)
T ss_dssp HHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC----------HHHHHHHHH---HCSEEEEEEET
T ss_pred HHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch----------hhhHHHHHh---hCCEEEEEEEC
Confidence 467777663233445555655444444443 24889999998322 333444443 35999999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHH---H-HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVA---R-RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 149 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~---~-~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l 149 (162)
..+.+... ..++..+.. .++|+++|+||+|+.+..... . ..+..++.....+ .+++++||++|.|++++
T Consensus 111 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~SA~~g~gv~el 187 (199)
T 2p5s_A 111 TCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG---ALFCETSAKDGSNIVEA 187 (199)
T ss_dssp TCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT---CEEEECCTTTCTTHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC---CeEEEeeCCCCCCHHHH
Confidence 76432222 223344443 268999999999985211100 0 0112222233232 48999999999999999
Q ss_pred HHHHHHhhh
Q 031293 150 RTVLSKIAR 158 (162)
Q Consensus 150 ~~~i~~~~~ 158 (162)
+.+|.+.+.
T Consensus 188 ~~~l~~~i~ 196 (199)
T 2p5s_A 188 VLHLAREVK 196 (199)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988664
No 94
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.2e-15 Score=103.52 Aligned_cols=108 Identities=20% Similarity=0.132 Sum_probs=68.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||+.. +..... ...+.+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+|
T Consensus 76 ~l~l~Dt~G~~~----------~~~~~~---~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 142 (201)
T 2ew1_A 76 KLQIWDTAGQER----------FRSITQ---SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142 (201)
T ss_dssp EEEEEEECCSGG----------GHHHHG---GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEECCCcHH----------HHHHHH---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 588999999821 122233 33456799999999876421111 223344433 3588999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+...... +..++.....+ .+++++||++|.|+++++.+|.+.+
T Consensus 143 l~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 143 LAERREVSQ--QRAEEFSEAQD---MYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp GGGGCSSCH--HHHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CccccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 964322110 11222222222 4899999999999999999998755
No 95
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.62 E-value=8e-16 Score=102.58 Aligned_cols=137 Identities=11% Similarity=0.093 Sum_probs=81.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. . .....|..+.+.. ....+. .+.++||||+.. +..... .....+|++++|+
T Consensus 26 li~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~---~~~~~~d~~i~v~ 90 (186)
T 2bme_A 26 LLHQFIEKK-F-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER----------FRSVTR---SYYRGAAGALLVY 90 (186)
T ss_dssp HHHHHHHSS-C-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG----------GHHHHH---TTSTTCSEEEEEE
T ss_pred HHHHHHcCC-C-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------HHHHHH---HHHhcCCEEEEEE
Confidence 467777662 2 2233343343332 233333 588999999822 122233 3345679999999
Q ss_pred ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+... ..++..+.. .++|+++|+||+|+.+...... ....+.....+ .+++++||++|.|+++++.
T Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 91 DITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEASRFAQENE---LMFLETSALTGENVEEAFV 165 (186)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHHTT---CEEEECCTTTCTTHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHHHHHHHcC---CEEEEecCCCCCCHHHHHH
Confidence 9876422111 123333332 3689999999999964322110 12223333333 4899999999999999999
Q ss_pred HHHHhh
Q 031293 152 VLSKIA 157 (162)
Q Consensus 152 ~i~~~~ 157 (162)
++.+.+
T Consensus 166 ~l~~~~ 171 (186)
T 2bme_A 166 QCARKI 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998755
No 96
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.62 E-value=9.5e-16 Score=104.00 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=81.7
Q ss_pred ChhcccCCCCceeccCCCCcceE--EEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQT--INFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~--~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++... .....|..+.+ ...+..+. .+.++||||+... ......+ ...+|++++|+
T Consensus 24 li~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~vilv~ 88 (206)
T 2bcg_Y 24 LLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSSY---YRGSHGIIIVY 88 (206)
T ss_dssp HHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGG---GTTCSEEEEEE
T ss_pred HHHHHhcCCC--CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHHHHh---ccCCCEEEEEE
Confidence 4677776622 12223333333 23334433 5899999998322 1112222 34569999999
Q ss_pred ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-.. ..++..+.. .+.|+++|+||+|+.+...... +...+.....+ .+++++||++|.|+++++.
T Consensus 89 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 89 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVAKEFADANK---MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CCEEECCTTTCTTHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHH
Confidence 9876432211 123333433 2588999999999975322110 12222333333 4899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 164 ~l~~~i~ 170 (206)
T 2bcg_Y 164 TMARQIK 170 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 97
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.61 E-value=2e-15 Score=98.75 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=68.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++||||+.. +......++. .+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+
T Consensus 53 ~~~l~D~~G~~~----------~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 119 (168)
T 1u8z_A 53 QIDILDTAGQED----------YAAIRDNYFR---SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119 (168)
T ss_dssp EEEEEECCC-------------CHHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECG
T ss_pred EEEEEECCCcch----------hHHHHHHHhh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECc
Confidence 588999999822 2334444443 3599999999875321111 122233322 268999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+..... .+..++.....+ .+++++||++|.|++++++++.+.+.
T Consensus 120 Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 120 DLEDKRQVS--VEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp GGGGGCCSC--HHHHHHHHHHHT---CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCccC--HHHHHHHHHHcC---CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 986432211 112223333333 48999999999999999999987653
No 98
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.61 E-value=5.6e-16 Score=104.55 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=69.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-hCCceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-SQTKYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-~~~~~ivv~nK~Dl 108 (162)
..+.++||||+... ......++. .+|++++|+|+..+.+... ..++..+.. .+.|+++|+||+|.
T Consensus 93 ~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERY----------ASIVPLYYR---GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGC----------TTTHHHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 45899999997322 223344433 4599999999986532222 223333333 46899999999993
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
. .... ..+.+++.+...+ .+++++||++|.|+++++++|.+.+.
T Consensus 160 ~-~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 160 N-KFQV--DILEVQKYAQDNN---LLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp C--CCS--CHHHHHHHHHHTT---CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred c-cccC--CHHHHHHHHHHcC---CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2 2111 1123333444443 48999999999999999999987653
No 99
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=2.3e-16 Score=105.95 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=85.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|++........ +..+.++||||. +.+......++. .+|++++|+|+
T Consensus 39 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~~---~~d~~i~v~d~ 105 (191)
T 3dz8_A 39 FLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ----------ERYRTITTAYYR---GAMGFILMYDI 105 (191)
T ss_dssp HHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH----------HHCHHHHHHHHT---TCCEEEEEEET
T ss_pred HHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHHHHc---cCCEEEEEEEC
Confidence 46667665322233344455555444444 235899999997 222444445544 45999999998
Q ss_pred CCCCCcc-HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-. ...++..+.. .++|+++|+||+|+.+...... +..+......+ .+++++||++|.|+++++++|
T Consensus 106 ~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 106 TNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT--EKGQLLAEQLG---FDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHH
Confidence 7532111 1224444444 3689999999999864322111 12222233333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 181 ~~~i~ 185 (191)
T 3dz8_A 181 VDAIC 185 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 100
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.61 E-value=6.3e-16 Score=102.89 Aligned_cols=109 Identities=16% Similarity=0.079 Sum_probs=60.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||+ ..+........+.+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+|
T Consensus 58 ~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 58 KLQIWDTAGQ-------------ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEcCCCC-------------hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5899999998 2221112222356799999999876422111 123344433 2689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+..... .+..++.....+ .+++++||++|.|+++++.+|.+.+.
T Consensus 125 l~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 125 VNDKRQVS--KERGEKLALDYG---IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CCSCCCSC--HHHHHHHHHHHT---CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CCccCcCC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 97532211 012222333333 48999999999999999999987653
No 101
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=102.51 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=71.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
++.++||||+.. +......+++ .+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+|
T Consensus 79 ~l~i~Dt~G~~~----------~~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 79 KLQIWDTAGQER----------FRTITQSYYR---SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEECCTTCGG----------GHHHHHHHHT---TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEECCCcHh----------HHHHHHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence 689999999822 2344455544 4599999999876321111 223344433 3589999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+..... .+..++.....+. .+++++||++|.|+++++.+|.+.+.
T Consensus 146 l~~~~~v~--~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 146 LSELREVS--LAEAQSLAEHYDI--LCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp CGGGCCSC--HHHHHHHHHHTTC--SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccccC--HHHHHHHHHHcCC--CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 96422111 1123333333321 38899999999999999999987653
No 102
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.61 E-value=1.9e-15 Score=102.38 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=62.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n 104 (162)
.+.++||||+ ..+..........+|++++|+|+..+.+-.. ..++..+.. .++|+++|+|
T Consensus 74 ~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 74 ELFLLDTAGS-------------DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp EEEEEETTTT-------------HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred EEEEEECCCc-------------HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence 4899999999 3333333334566799999999876432111 233444443 3789999999
Q ss_pred ccCCCC-cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC-CCCHHHHHHHHHHhh
Q 031293 105 KTDTVF-PIDVARRAMQIEESLKANNSLVQPVMMVSSKS-GAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~-~~g~~~l~~~i~~~~ 157 (162)
|+|+.+ ..... .+...+.....+ .+++++||++ |.|+++++++|.+.+
T Consensus 141 K~Dl~~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 141 KTDLPPQRHQVR--LDMAQDWATTNT---LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp CC-------CCC--HHHHHHHHHHTT---CEEEECCC-------CHHHHHHHHHH
T ss_pred CcccchhhccCC--HHHHHHHHHHcC---CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 999975 22211 122333344343 4899999999 999999999998755
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=2.6e-16 Score=104.69 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=82.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++. ......++.|.+.. .... +.++.++||||+... ...... ....+|++++|+|+..
T Consensus 34 li~~l~~~-~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~ii~v~d~~~ 97 (183)
T 1moz_A 34 ILYRLQIG-EVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTSI----------RPYWRC---YYADTAAVIFVVDSTD 97 (183)
T ss_dssp HHHHTCCS-EEEEECSSTTCCEE--EEEETTEEEEEEEEC----C----------CTTGGG---TTTTEEEEEEEEETTC
T ss_pred HHHHHhcC-CcCccCCcCccceE--EEEECCEEEEEEECCCCHhH----------HHHHHH---HhccCCEEEEEEECCC
Confidence 46777766 34555666664432 2223 456899999998321 111222 2356799999999876
Q ss_pred CCCccH-HHHHHHH-H---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHHHH
Q 031293 80 GVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 80 ~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+.+-.. ..++..+ . ..+.|+++|+||+|+.+..... .+.+.+... .....+++++||++|.|+++++++
T Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 98 KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSAS----EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDW 173 (183)
T ss_dssp TTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHH----HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHH----HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 532221 1222222 2 2468999999999997542222 222222211 112247999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 174 l~~~~~ 179 (183)
T 1moz_A 174 LIDVIK 179 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 104
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.61 E-value=1.5e-15 Score=101.69 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=80.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHH-HHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWE-ELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++........+..|.+.....+..+. ++.++||||. +.+. .....+++ .+|++++|+|
T Consensus 36 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~~~---~~d~iilv~D 102 (189)
T 1z06_A 36 LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------ERFRKSMVQHYYR---NVHAVVFVYD 102 (189)
T ss_dssp HHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS----------HHHHTTTHHHHHT---TCCEEEEEEE
T ss_pred HHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhhHHHhc---CCCEEEEEEE
Confidence 4677776522222233333333333344433 5899999998 2222 33444443 4699999999
Q ss_pred cCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCC---CCHHH
Q 031293 77 TKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSG---AGIRS 148 (162)
Q Consensus 77 ~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~---~g~~~ 148 (162)
+..+.+-.. ..++..+.. .++|+++|+||+|+.+...... +..++.....+ .+++++||++| .|+++
T Consensus 103 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 103 MTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--DLAQKFADTHS---MPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp TTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHHHHTT---CCEEECCSSSGGGGSCHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH--HHHHHHHHHcC---CEEEEEeCCcCCcccCHHH
Confidence 876321111 223333322 3689999999999964322111 12223333333 48999999999 99999
Q ss_pred HHHHHHHhhh
Q 031293 149 LRTVLSKIAR 158 (162)
Q Consensus 149 l~~~i~~~~~ 158 (162)
++.+|.+.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999977653
No 105
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.60 E-value=4.8e-15 Score=98.63 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=81.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. . ....++++..... +..+. .+.++||||+... ......++. .+|++++|+
T Consensus 34 li~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~ 97 (187)
T 2a9k_A 34 LTLQFMYDE-F--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRDNYFR---SGEGFLCVF 97 (187)
T ss_dssp HHHHHHHSC-C--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEE
T ss_pred HHHHHhhCC-C--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc----------HHHHHHHhc---cCCEEEEEE
Confidence 467777662 1 2333333332221 23332 5889999998322 333444443 359999999
Q ss_pred ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|+....+-.. ..++..+.. .++|+++|+||+|+.+..... .+..++.+...+ .+++++||++|.|+++++
T Consensus 98 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 98 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQWN---VNYVETSAKTRANVDKVF 172 (187)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHHHHHHHcC---CeEEEeCCCCCCCHHHHH
Confidence 9875321111 122222222 268999999999986432211 122333344333 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
.+|.+.+.
T Consensus 173 ~~l~~~i~ 180 (187)
T 2a9k_A 173 FDLMREIR 180 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 106
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.60 E-value=8.6e-15 Score=100.03 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=65.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+. .+......++ ..+|++++|+|+..+.+-... .++..+... ++|+++|+||+|
T Consensus 83 ~l~l~Dt~G~~----------~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 149 (214)
T 2j1l_A 83 HLHIWDTAGQD----------DYDRLRPLFY---PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTD 149 (214)
T ss_dssp EEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGG
T ss_pred EEEEEECCCch----------hhhHHHHHHh---ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 58899999982 2233333333 456999999998764221111 233444432 689999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.......+.. +...+.....+ ..+++++||++|.|+++++.+|.+.+.
T Consensus 150 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 150 LRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG--AVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp GGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhccchhhhhhcccccCcccHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 98654332211 12233333332 248999999999999999999987654
No 107
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.60 E-value=6.5e-15 Score=98.56 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=65.8
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||.. .+......+ ...+|++++|+|.....+..+ ..++..+.. .++|+++|+||+
T Consensus 70 ~~~l~Dt~G~~----------~~~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~ 136 (190)
T 3con_A 70 LLDILDTAGQE----------EYSAMRDQY---MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136 (190)
T ss_dssp EEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEECCChH----------HHHHHHHHh---hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 38899999982 122333333 345699999999876432112 122333332 268999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+.....+ ..++.....+ .+++++||++|.|+++++.+|.+.+.
T Consensus 137 Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 137 DLPTRTVDTK---QAHELAKSYG---IPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TCSCCCSCHH---HHHHHHHHHT---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCcccCCHH---HHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9875321111 2222333333 48999999999999999999988764
No 108
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.60 E-value=1.4e-15 Score=116.93 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=68.9
Q ss_pred ccCCCCcceEEE--EEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH
Q 031293 14 TSDKPGLTQTIN--FFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS 90 (162)
Q Consensus 14 ~~~~~g~t~~~~--~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~ 90 (162)
.+...|+|.... .+.+ +.+++++||||| .+|..+..+.++.+|++++|+||.+++..++...++
T Consensus 80 ~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-------------vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~ 146 (548)
T 3vqt_A 80 MERERGISVTTSVMQFPYRDRVVNLLDTPGH-------------QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD 146 (548)
T ss_dssp --------CTTTEEEEEETTEEEEEECCCCG-------------GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH
T ss_pred HHHHCCCcEeeceEEEEECCEEEEEEeCCCc-------------HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH
Confidence 445667664222 2333 667999999999 666777777777889999999999999999999999
Q ss_pred HHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHH
Q 031293 91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 125 (162)
Q Consensus 91 ~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 125 (162)
.+.+.++|.++++||+|....+ ....++.+++.+
T Consensus 147 ~a~~~~lp~i~fINK~Dr~~ad-~~~~~~~i~~~l 180 (548)
T 3vqt_A 147 VCRMRATPVMTFVNKMDREALH-PLDVMADIEQHL 180 (548)
T ss_dssp HHHHTTCCEEEEEECTTSCCCC-HHHHHHHHHHHH
T ss_pred HHHHhCCceEEEEecccchhcc-hhHhhhhhhhhc
Confidence 9999999999999999987433 233334444433
No 109
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=5.3e-16 Score=104.12 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=83.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+ .++.++||||+... ......++. .+|++++|+|+
T Consensus 31 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~ii~v~d~ 97 (195)
T 1x3s_A 31 LLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF----------RTLTPSYYR---GAQGVILVYDV 97 (195)
T ss_dssp HHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------CCSHHHHHT---TCCEEEEEEET
T ss_pred HHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------hhhhHHHhc---cCCEEEEEEEC
Confidence 467777663222233444444444444443 35889999998322 222334433 45999999998
Q ss_pred CCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
..+.+... ..++..+.. .++|+++|+||+|+....... +...+.....+ .+++++||++|.|+++++++
T Consensus 98 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 98 TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDR---NEGLKFARKHS---MLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCH---HHHHHHHHHTT---CEEEECCTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCH---HHHHHHHHHcC---CEEEEecCCCCCCHHHHHHH
Confidence 76422111 123333433 257899999999995432111 12223333333 48999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 172 l~~~~~ 177 (195)
T 1x3s_A 172 LVEKII 177 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 110
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.60 E-value=7.6e-16 Score=101.87 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=81.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. . .....|..+.+... ...+. ++.++||||+... ......++. .+|++++|+
T Consensus 30 li~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~ 94 (179)
T 2y8e_A 30 LITRFMYDS-F-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLIPSYIR---DSTVAVVVY 94 (179)
T ss_dssp HHHHHHHSC-C-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG----------GGGSHHHHH---TCSEEEEEE
T ss_pred HHHHHHcCC-C-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH----------HHHHHHHhc---CCCEEEEEE
Confidence 467777652 2 22334444433332 33332 5899999997321 223334433 359999999
Q ss_pred ecCCCCCcc-HHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPR-DHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~-~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-. ...++..+.. .++|+++|+||+|+.+...... +.........+ .+++++||++|.|++++++
T Consensus 95 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 95 DITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELN---VMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH--HHHHHHHHHHT---CEEEEEBTTTTBSHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH--HHHHHHHHHcC---CeEEEEeCCCCCCHHHHHH
Confidence 987532111 1223333322 3689999999999874322110 11222223232 4899999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9988664
No 111
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.3e-16 Score=106.30 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=78.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+.....+..+. .+.+|||||+... ......+ .+.+|++++|+|+
T Consensus 29 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~vilV~D~ 95 (223)
T 3cpj_B 29 LLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAITSAY---YRGAVGALIVYDI 95 (223)
T ss_dssp HHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGGG---TTTCCEEEEEEC-
T ss_pred HHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccch----------hhhHHHH---hccCCEEEEEEeC
Confidence 4677776622112223333333333344433 6899999998321 1112222 3456999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+...... +...+.....+ .+++++||++|.|+++++++|
T Consensus 96 ~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 96 SKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EESKTFAQENQ---LLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHHHHHHHHTT---CEEEECCCC-CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence 76432222 1233444432 689999999999964322110 12223333333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 171 ~~~i~ 175 (223)
T 3cpj_B 171 INTIY 175 (223)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87653
No 112
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=4.4e-15 Score=99.76 Aligned_cols=111 Identities=12% Similarity=-0.016 Sum_probs=71.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ......+ .+.+|++++|+|+..+.+-... .++..+... ++|+++|+||+|
T Consensus 67 ~~~i~D~~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 133 (194)
T 2atx_A 67 LLGLYDTAGQEDY----------DRLRPLS---YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 133 (194)
T ss_dssp EEEEECCCCSSSS----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTT
T ss_pred EEEEEECCCCcch----------hHHHHHh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 5889999998332 1122222 3456999999998764221121 344555544 789999999999
Q ss_pred CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+....... .+...+.....+ ..+++++||++|.|+++++.+|.+.+
T Consensus 134 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIG--ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp STTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcccccchhhcccccCcccCHHHHHHHHHHcC--CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9864322110 112222333232 24899999999999999999998764
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=5.6e-15 Score=99.95 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=71.2
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ...... ....+|++++|+|...+.+-.. ..++..+... ++|+++|+||+|
T Consensus 74 ~l~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 140 (201)
T 2gco_A 74 ELALWDTAGQEDY----------DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140 (201)
T ss_dssp EEEEECCCCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred EEEEEECCCchhH----------HHHHHH---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHH
Confidence 5889999998221 111222 2355799999999876322111 2344555544 789999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.....+.. +...+.....+ ..+++++||++|.|+++++++|.+.+
T Consensus 141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRIS--AFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp GTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhcCccchhhhcccccCcCCHHHHHHHHHhCC--CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 98654322211 12222233222 23789999999999999999998754
No 114
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.60 E-value=1.7e-15 Score=102.85 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=71.2
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccCC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
+.++||||+... ...... ..+.+|++++|+|+..+.+-... .++..+... ++|+++|+||+|+
T Consensus 80 l~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 80 LGLWDTAGLEDY----------DRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEEECCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred EEEEECCCchhh----------HHHHHH---HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 569999998221 112222 34567999999999864322222 344555544 7899999999999
Q ss_pred CCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.+.....+.. +.........+. .+++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC--SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccchhhhhhhhccccccccHHHHHHHHHhcCC--cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 7654422211 122223333332 4699999999999999999998753
No 115
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=103.41 Aligned_cols=137 Identities=11% Similarity=0.092 Sum_probs=77.1
Q ss_pred ChhcccCCCCceeccCCCCcc--eEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLT--QTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t--~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. .. ....|..+ ........+ ..+.++||||+. .+......++ ..+|++++|+
T Consensus 41 Li~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~~---~~~d~~i~v~ 105 (200)
T 2o52_A 41 LLHQFIENK-FK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFRSVTRSYY---RGAAGALLVY 105 (200)
T ss_dssp HHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHSCCCHHHH---TTCSEEEEEE
T ss_pred HHHHHHhCC-CC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH----------hHHHHHHHHh---ccCCEEEEEE
Confidence 467777662 22 22223323 223333343 368999999981 1222233443 3459999999
Q ss_pred ecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
|+..+.+-.. ..++..+.. .++|+++|+||+|+.+...... ....+.....+ .+++++||++|.|+++++.
T Consensus 106 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 106 DITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEASRFAQENE---LMFLETSALTGENVEEAFL 180 (200)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHHHHHHHTT---CEEEEECTTTCTTHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHHH
Confidence 9876422111 223333332 3689999999999864322110 12223333333 4899999999999999999
Q ss_pred HHHHhh
Q 031293 152 VLSKIA 157 (162)
Q Consensus 152 ~i~~~~ 157 (162)
+|.+.+
T Consensus 181 ~l~~~i 186 (200)
T 2o52_A 181 KCARTI 186 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998755
No 116
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.59 E-value=8.2e-16 Score=100.71 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=80.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........+. ++.++||||+... ......++. .+|++++|+|+
T Consensus 21 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~ 87 (168)
T 1z2a_A 21 MIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF----------DAITKAYYR---GAQACVLVFST 87 (168)
T ss_dssp HHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT----------TCCCHHHHT---TCCEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH----------HHHHHHHhc---CCCEEEEEEEC
Confidence 4677776622111222222222222333332 5899999997322 122333433 45999999998
Q ss_pred CCCCCccH-HHHHHHHHH--hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER--SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~--~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
..+.+-.. ..++..+.. .+.|+++|+||+|+.+..... .+..++.....+ .+++++||++|.|+++++++|.
T Consensus 88 ~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 88 TDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK--NEEAEGLAKRLK---LRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp TCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC--HHHHHHHHHHHT---CEEEECBTTTTBSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC--HHHHHHHHHHcC---CeEEEEecCCCCCHHHHHHHHH
Confidence 76421111 123333322 378999999999987432210 012222333333 4899999999999999999998
Q ss_pred Hhh
Q 031293 155 KIA 157 (162)
Q Consensus 155 ~~~ 157 (162)
+.+
T Consensus 163 ~~~ 165 (168)
T 1z2a_A 163 EKH 165 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 117
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.59 E-value=8.7e-16 Score=105.01 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=69.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH-------hCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER-------SQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~-------~~~~~ivv~n 104 (162)
++.+|||||+ +.+......++ ..+|++++|+|+..+.+- .....++.. .++|+++|+|
T Consensus 85 ~l~l~Dt~G~----------~~~~~~~~~~~---~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 85 HLQLWDTAGQ----------ERFRSLTTAFF---RDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEESH----------HHHHHHHHHHH---TTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEECCCc----------HhHHhHHHHHh---cCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 5899999998 23334444444 345999999998764211 112223332 3578999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+|+.+..... .+..++.....+ .+++++||++|.|+++++++|.+.+
T Consensus 150 K~Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 150 KADLPDQREVN--ERQARELADKYG---IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp CTTCGGGCCSC--HHHHHHHHHHTT---CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCccccccccC--HHHHHHHHHHCC---CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 99996432211 122333333333 4899999999999999999998765
No 118
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.5e-15 Score=97.95 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=69.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cHHHHHHHHHH-----hCCceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RDHELISLMER-----SQTKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~~~~~~~l~~-----~~~~~ivv~nK 105 (162)
.+.++||||+... ......++.. +|++++|+|+..+.+. ....++..+.. .++|+++|+||
T Consensus 52 ~~~~~Dt~G~~~~----------~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 52 TLQITDTTGSHQF----------PAMQRLSISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEECCSCSSC----------HHHHHHHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEECCCchhh----------HHHHHHhccc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 4899999998332 2333444433 5999999998753211 11223333332 26899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
+|+.+...... ..........+ .+++++||++|.|+++++++|.+.++.
T Consensus 119 ~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 119 CDESPSREVQS--SEAEALARTWK---CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp GGGGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred cccccccccCH--HHHHHHHHHhC---CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99864322211 11122222222 489999999999999999999987653
No 119
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.59 E-value=9e-16 Score=103.06 Aligned_cols=139 Identities=13% Similarity=0.049 Sum_probs=82.0
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..|.+........ +.++.++||||+... ......++. .+|++++|+|+
T Consensus 41 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~d~vi~v~D~ 107 (193)
T 2oil_A 41 LLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY----------RAITSAYYR---GAVGALLVFDL 107 (193)
T ss_dssp HHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT----------CTTHHHHHT---TCCEEEEEEET
T ss_pred HHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhHHHhc---cCCEEEEEEEC
Confidence 46777776321122223333333233333 235889999998332 223334433 45999999998
Q ss_pred CCCCCccH-HHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+.. .++|+++|+||+|+.+..... .+..+......+ .+++++||++|.|+++++.+|
T Consensus 108 ~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 108 TKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP--TEEARMFAENNG---LLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp TCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHHHTT---CEEEEECTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHH
Confidence 76422111 223344433 268899999999997432211 112233333333 489999999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 183 ~~~i 186 (193)
T 2oil_A 183 LKEI 186 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 120
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.59 E-value=7.8e-16 Score=103.56 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHH-HHHH---hCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELIS-LMER---SQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~-~l~~---~~~~~ivv~n 104 (162)
+.++.++||||+.. +......++. .+|++++|+|+..+.+-.. ..++. .+.. .++|+++|+|
T Consensus 72 ~~~~~i~Dt~G~~~----------~~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 138 (192)
T 2b6h_A 72 NICFTVWDVGGQDK----------IRPLWRHYFQ---NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138 (192)
T ss_dssp TEEEEEEECC---------------CTTHHHHHH---TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CEEEEEEECCCCHh----------HHHHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence 34689999999822 1223344443 4599999999976422111 12222 2221 2689999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHh--cCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKA--NNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+|+.+.....+ +.+.+.. ......+++++||++|.|+++++++|.+.+.
T Consensus 139 K~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 139 KQDMPNAMPVSE----LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CTTSTTCCCHHH----HHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHH----HHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 999975422222 2222221 1112247899999999999999999987653
No 121
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.59 E-value=8.3e-16 Score=103.26 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=81.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
|+|+|++. ......++.+.+. ..... +.++.++||||+... ......+ .+.+|++++|+|+..
T Consensus 39 li~~l~~~-~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~ 102 (190)
T 1m2o_B 39 LLHMLKND-RLATLQPTWHPTS--EELAIGNIKFTTFDLGGHIQA----------RRLWKDY---FPEVNGIVFLVDAAD 102 (190)
T ss_dssp HHHHHHHS-CCCCCCCCCSCEE--EEEEETTEEEEEEECCCSGGG----------TTSGGGG---CTTCCEEEEEEETTC
T ss_pred HHHHHhcC-CCCccccCCCCCe--EEEEECCEEEEEEECCCCHHH----------HHHHHHH---HhcCCEEEEEEECCC
Confidence 46777766 3344444555432 22333 456899999999332 1122222 345699999999986
Q ss_pred CCCccH-HHHHHHH-H---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcC---------CCCCCeEEeecCCCCC
Q 031293 80 GVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN---------SLVQPVMMVSSKSGAG 145 (162)
Q Consensus 80 ~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~Sa~~~~g 145 (162)
+.+-.. ..++..+ . ..+.|+++|+||+|+...... +.+.+.+.... ....+++++||++|.|
T Consensus 103 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 103 PERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE----AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH----HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred hHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH----HHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 532111 1222222 2 246899999999999752222 22333333211 1234799999999999
Q ss_pred HHHHHHHHHHh
Q 031293 146 IRSLRTVLSKI 156 (162)
Q Consensus 146 ~~~l~~~i~~~ 156 (162)
+++++++|.+.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.59 E-value=7.6e-15 Score=99.31 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=81.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. . ....++++.+.. .+..+. .+.++||||+... ......++. .+|++++|+
T Consensus 30 li~~l~~~~-~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~---~~~~~i~v~ 93 (206)
T 2bov_A 30 LTLQFMYDE-F--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----------AAIRDNYFR---SGEGFLCVF 93 (206)
T ss_dssp HHHHHHHSC-C--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEE
T ss_pred HHHHHHhCC-C--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh----------HHHHHHHHh---hCCEEEEEE
Confidence 467777662 1 233344433222 233333 5889999998332 333444443 349999999
Q ss_pred ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|+....+-.. ..++..+.. .++|+++|+||+|+.+..... .+...+.....+ .+++++||++|.|+++++
T Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 94 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAEQWN---VNYVETSAKTRANVDKVF 168 (206)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHHHHT---CEEEEECTTTCTTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc--HHHHHHHHHHhC---CeEEEEeCCCCCCHHHHH
Confidence 9876321111 122333322 268999999999997432211 112233333333 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
.+|.+.+.
T Consensus 169 ~~l~~~i~ 176 (206)
T 2bov_A 169 FDLMREIR 176 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 123
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.59 E-value=1.5e-14 Score=94.21 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=69.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh----CCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~----~~~~ivv~nK~ 106 (162)
.+.++||||+... ......++. .+|++++++|+..+.+... ..++..+... ++|+++|+||+
T Consensus 52 ~~~~~D~~G~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 52 LLDILDTAGQEEY----------SAMRDQYMR---TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEECCCCSSC----------CHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEECCCchhh----------hHHHHHhhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEch
Confidence 4789999998432 223334433 3499999999875322111 2233333322 68999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+.....+ ..++.....+ .+++++||++|.|+++++.+|.+.+.
T Consensus 119 Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 119 DLAARTVESR---QAQDLARSYG---IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCSCCCSCHH---HHHHHHHHHT---CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred hhhhcccCHH---HHHHHHHHcC---CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9875322222 2222233333 48999999999999999999988654
No 124
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.59 E-value=2.6e-15 Score=98.03 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=68.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||+... ......++. .+|++++++|...+.+... ..++..+.. .+.|+++|+||+
T Consensus 52 ~~~l~D~~G~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1kao_A 52 VLEILDTAGTEQF----------ASMRDLYIK---NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118 (167)
T ss_dssp EEEEEECCCTTCC----------HHHHHHHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECG
T ss_pred EEEEEECCCchhh----------HHHHHHHhc---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 3889999998322 333444443 3489999999876321111 112222222 368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+...... +..++.....+ .+++++||++|.|+++++++|.+.+.
T Consensus 119 Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 119 DLESEREVSS--SEGRALAEEWG---CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp GGGGGCCSCH--HHHHHHHHHHT---SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCH--HHHHHHHHHhC---CCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 9864322111 12222233233 48999999999999999999988764
No 125
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.59 E-value=2.2e-15 Score=102.07 Aligned_cols=137 Identities=10% Similarity=0.043 Sum_probs=79.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. .. ....|..+.+... ...+ ..+.++||||+... ......+ ...+|++++|+
T Consensus 24 li~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~ 88 (207)
T 1vg8_A 24 LMNQYVNKK-FS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLGVAF---YRGADCCVLVF 88 (207)
T ss_dssp HHHHHHHSC-CC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSCCGG---GTTCSEEEEEE
T ss_pred HHHHHHcCC-CC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhHHHH---HhCCcEEEEEE
Confidence 467777762 22 2223333333332 3332 25899999998321 1111222 24569999999
Q ss_pred ecCCCCCccH-HHHHHHHH-H------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 76 DTKWGVKPRD-HELISLME-R------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~-~------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
|+..+.+-.. ..++..+. . .++|+++|+||+|+.+...... ...+..... ...+++++||++|.|++
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~~~~~~--~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 89 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK---RAQAWCYSK--NNIPYFETSAKEAINVE 163 (207)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHH---HHHHHHHHT--TSCCEEECBTTTTBSHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHH---HHHHHHHhc--CCceEEEEeCCCCCCHH
Confidence 9876422111 12222222 1 3689999999999974322111 222222212 22589999999999999
Q ss_pred HHHHHHHHhh
Q 031293 148 SLRTVLSKIA 157 (162)
Q Consensus 148 ~l~~~i~~~~ 157 (162)
+++++|.+.+
T Consensus 164 ~l~~~l~~~~ 173 (207)
T 1vg8_A 164 QAFQTIARNA 173 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998755
No 126
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.59 E-value=3.5e-16 Score=114.65 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=82.2
Q ss_pred CceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEecc
Q 031293 31 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~ 106 (162)
.++.+|||||++.... +....+.+..++..|+... .+++++++|+..++...+.. ++..+...+.|+++|+||+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~ 207 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKL 207 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTST--TEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCC--CeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccc
Confidence 5699999999976432 3334456677777887643 36888888988776665543 6666666689999999999
Q ss_pred CCCCcHH-HHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPID-VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.++.. ... .++.........+.+++++||+++.|++++++++.+.-+
T Consensus 208 Dl~~~~~~~~~---~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~ 257 (353)
T 2x2e_A 208 DLMDEGTDARD---VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 257 (353)
T ss_dssp GGSCTTCCCHH---HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHH
T ss_pred cccCcchhHHH---HHhCCcccccCCceEEEeCCcccccccccHHHHHHHHHH
Confidence 9985432 111 111100000111246888999999999999999976443
No 127
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.58 E-value=7.6e-16 Score=111.81 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=81.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++.. .. +..| |....+..+ +.++.++||||+. .+......++. .+|++++|+|+
T Consensus 181 Ll~~l~~~~-~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~---~ad~vilV~D~ 242 (329)
T 3o47_A 181 ILYKLKLGE-IV--TTIP--TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQ---NTQGLIFVVDS 242 (329)
T ss_dssp HHHHTCSSC-CE--EEEE--ETTEEEEEEEETTEEEEEEECC---------------CCSHHHHHT---TEEEEEEEEET
T ss_pred HHHHHhCCC-CC--Cccc--ccceEEEEEecCcEEEEEEECCCCH----------hHHHHHHHHhc---cCCEEEEEEEC
Confidence 467777663 22 2223 333333322 4469999999972 22223444443 46999999999
Q ss_pred CCCCC--ccHHHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHH
Q 031293 78 KWGVK--PRDHELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 78 ~~~~~--~~~~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
...-+ ....++...+... ++|+++|+||+|+.+.....+ +...+... .....+++++||++|.|+++++
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE----ITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH----HHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH----HHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 65432 2222333343332 789999999999986443322 22222221 1123479999999999999999
Q ss_pred HHHHHhhhh
Q 031293 151 TVLSKIARF 159 (162)
Q Consensus 151 ~~i~~~~~~ 159 (162)
++|.+.+..
T Consensus 319 ~~l~~~l~~ 327 (329)
T 3o47_A 319 DWLSNQLRN 327 (329)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999987653
No 128
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.58 E-value=6.3e-15 Score=98.05 Aligned_cols=112 Identities=13% Similarity=-0.016 Sum_probs=71.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ...... ..+.+|++++|+|+..+.+-... .++..+... ++|+++|+||+|
T Consensus 54 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 120 (186)
T 1mh1_A 54 NLGLWDTAGQEDY----------DRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120 (186)
T ss_dssp EEEEECCCCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHH
T ss_pred EEEEEECCCCHhH----------HHHHHH---hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccc
Confidence 4779999999221 111222 23557999999998764322222 244555544 789999999999
Q ss_pred CCCcHHHHHHH----------HHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRA----------MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+.....+.. +...+.....+ ..+++++||++|.|+++++.++.+.+.
T Consensus 121 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp HHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred ccccchhhhhhcccccccCCHHHHHHHHHhcC--CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 97543321111 12222233232 248999999999999999999988663
No 129
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.58 E-value=8.3e-15 Score=96.10 Aligned_cols=110 Identities=13% Similarity=0.004 Sum_probs=67.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHH-HHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHHh----CCceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEE-LVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMERS----QTKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~----~~~~ivv~nK 105 (162)
.+.++||||+... .. +...++. .+|++++|+|...+.+-.. ..++..+... ++|+++|+||
T Consensus 52 ~~~i~D~~g~~~~----------~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 52 TLIVYDIWEQGDA----------GGWLQDHCLQ---TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEECCCCC------------------CHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEECCCcccc----------chhhhhhhhc---cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 4789999999322 11 1222222 3599999999876321111 1223333222 6899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
+|+.+...... +...+.....+ .+++++||++|.|++++++++.+.+..
T Consensus 119 ~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 119 SDLARSREVSL--EEGRHLAGTLS---CKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTCGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cchhhcccCCH--HHHHHHHHHcC---CcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 99863322111 12223333333 489999999999999999999987654
No 130
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.58 E-value=5.9e-16 Score=102.85 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=79.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..+.+. ......+ .++.++||||+... ......+ .+.+|++++|+|.
T Consensus 22 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~~~~~i~v~d~ 87 (181)
T 3t5g_A 22 LTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEY----------SIFPQTY---SIDINGYILVYSV 87 (181)
T ss_dssp HHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTT----------CCCCGGG---TTTCSEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhh----------hHHHHHH---HhcCCEEEEEEEC
Confidence 4677775522233333333333 2223333 24789999998332 1111222 2346999999998
Q ss_pred CCCCCccH-HHHHHHH----HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 78 KWGVKPRD-HELISLM----ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l----~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
....+-.. ..++..+ ...++|+++|+||+|+.+...... +..++.....+ .+++++||++|.|+++++.+
T Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 88 TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEGKALAESWN---AAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp TCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHHHHHHHHTT---CEEEECCTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHHHHHHHHhC---CcEEEEecCCCCCHHHHHHH
Confidence 75321111 1122222 223689999999999864332211 12333334333 48999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 163 l~~~~~ 168 (181)
T 3t5g_A 163 IILEAE 168 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988664
No 131
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.58 E-value=7.5e-15 Score=96.00 Aligned_cols=109 Identities=16% Similarity=0.050 Sum_probs=68.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++||||+... ......++. .+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+
T Consensus 52 ~~~l~D~~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 52 MLEILDTAGTEQF----------TAMRDLYMK---NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEECSSCSS----------TTHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEECCChHHH----------HHHHHHHhc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 4889999998332 223334433 2499999999875321111 123333322 368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+.+..... .+..++...... ..+++++||++|.|+++++++|.+.+
T Consensus 119 Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 119 DLEDERVVG--KEQGQNLARQWC--NCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TCGGGCCSC--HHHHHHHHHHTT--SCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccccccCC--HHHHHHHHHHcc--CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 996432211 112223333331 25899999999999999999998765
No 132
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.58 E-value=1.2e-15 Score=100.89 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=69.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH-----hCCc-eEEEE
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER-----SQTK-YQVVL 103 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~-----~~~~-~ivv~ 103 (162)
.++.++||||+... ......+++ .+|++++|+|+..+.+-.. ..++..+.. .+.| +++|+
T Consensus 56 ~~~~~~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~ 122 (178)
T 2hxs_A 56 VTLQIWDIGGQTIG----------GKMLDKYIY---GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122 (178)
T ss_dssp EEEEEEECTTCCTT----------CTTHHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEECCCCccc----------cchhhHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEE
Confidence 35899999998332 222334433 4599999999876432111 123333433 1566 79999
Q ss_pred eccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 104 TKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 104 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
||+|+.+...... +...+.....+ .+++++||++|.|+++++.+|.+.+.
T Consensus 123 nK~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 123 NKIDLEHMRTIKP--EKHLRFCQENG---FSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ECGGGGGGCSSCH--HHHHHHHHHHT---CEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred EccccccccccCH--HHHHHHHHHcC---CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999964221110 12222233232 48999999999999999999988664
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=4.1e-14 Score=103.76 Aligned_cols=145 Identities=20% Similarity=0.218 Sum_probs=92.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...++..|++|.+...... +..+.++||||+........ +... ......-...+|.+++|+|+
T Consensus 183 Lin~L~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~~~--~~~~~~~~~~ad~illV~D~ 256 (357)
T 2e87_A 183 LLKALTTA--KPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISER--NEIE--KQAILALRYLGNLIIYIFDP 256 (357)
T ss_dssp HHHHHCSS--CCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTS--CHHH--HHHHHGGGGTCSEEEEEECT
T ss_pred HHHHHhCC--CCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhh--hHHH--HHHHHHHHhcCCEEEEEEeC
Confidence 57888888 2557788888887665433 34589999999854321110 0001 01111122346999999997
Q ss_pred CCCC--CccH-HHHHHHHHH-h-CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 78 KWGV--KPRD-HELISLMER-S-QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 78 ~~~~--~~~~-~~~~~~l~~-~-~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
+.+. .... ..++..+.. . ++|+++|+||+|+.......+ ..+.+...+ .+++++||++|+|+++++++
T Consensus 257 s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~---~~~~~iSA~~g~gi~~l~~~ 329 (357)
T 2e87_A 257 SEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKR----LEKFVKEKG---LNPIKISALKGTGIDLVKEE 329 (357)
T ss_dssp TCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHH----HHHHHHHTT---CCCEECBTTTTBTHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHH----HHHHHHhcC---CCeEEEeCCCCcCHHHHHHH
Confidence 6543 2222 234444433 2 799999999999986654432 222333232 58999999999999999999
Q ss_pred HHHhhh
Q 031293 153 LSKIAR 158 (162)
Q Consensus 153 i~~~~~ 158 (162)
|.+.+.
T Consensus 330 i~~~l~ 335 (357)
T 2e87_A 330 IIKTLR 335 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987664
No 134
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.58 E-value=3.5e-15 Score=99.25 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=67.9
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH----HhCCceEEEEeccC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME----RSQTKYQVVLTKTD 107 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~----~~~~~~ivv~nK~D 107 (162)
+.++||||+... ......+++ .+|++++|+|...+.+-.. ..++..+. ..++|+++|+||+|
T Consensus 68 l~i~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 68 LDVLDTAGQEEF----------SAMREQYMR---TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEEEECCSCGGG----------CSSHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEEEECCCchhh----------HHHHHHHHh---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 667999998322 222333333 3499999999876421111 12222222 24689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC-CCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~-~~~g~~~l~~~i~~~~~ 158 (162)
+.+...... +..++.....+ .+++++||+ +|.|+++++.+|.+.+.
T Consensus 135 l~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 135 LMHLRKVTR--DQGKEMATKYN---IPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp CSTTCCSCH--HHHHHHHHHHT---CCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred chhccCcCH--HHHHHHHHHhC---CeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 875322111 12223333333 489999999 99999999999988664
No 135
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=7.9e-15 Score=115.68 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=77.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHH-HHHHhCCceEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELIS-LMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~-~l~~~~~~~ivv~nK~Dl~ 109 (162)
..+.+|||||++.... .......++ ..+|++++|+|+..+.+..+...+. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~-------~~~~~~~~i---~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEA-------RNELSLGYV---NNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHT-------CHHHHTHHH---HSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhh-------HHHHHHHHH---HhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999854211 122334444 3469999999999887776665553 4555578999999999987
Q ss_pred CcH--------HHHHHHHHH----HHHHHhc-C-----CCCCCeEEeecC--------------CCCCHHHHHHHHHHhh
Q 031293 110 FPI--------DVARRAMQI----EESLKAN-N-----SLVQPVMMVSSK--------------SGAGIRSLRTVLSKIA 157 (162)
Q Consensus 110 ~~~--------~~~~~~~~~----~~~~~~~-~-----~~~~~i~~~Sa~--------------~~~g~~~l~~~i~~~~ 157 (162)
... ......+.+ ...+... + ....+++++||+ ++.|+++++.++.+.+
T Consensus 244 ~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 244 RESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp GGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred cccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 442 122222222 2223211 1 122489999999 9999999999998755
Q ss_pred h
Q 031293 158 R 158 (162)
Q Consensus 158 ~ 158 (162)
.
T Consensus 324 ~ 324 (695)
T 2j69_A 324 T 324 (695)
T ss_dssp H
T ss_pred H
Confidence 3
No 136
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=7.8e-15 Score=99.68 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--ccHHHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--PRDHELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--~~~~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ...... ....+|++++|+|...+.+ .....++..+... ++|+++|+||+|
T Consensus 74 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 140 (207)
T 2fv8_A 74 ELALWDTAGQEDY----------DRLRPL---SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 140 (207)
T ss_dssp EEEEEECTTCTTC----------TTTGGG---GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred EEEEEECCCcHHH----------HHHHHh---hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 5889999998322 111222 2345699999999876321 1112344555544 789999999999
Q ss_pred CCCcHHHHHHHH----------HHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAM----------QIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+.....+... ...+.....+ ..+++++||++|.|+++++++|.+.+
T Consensus 141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ--AYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhccccchhhhhhcccCCCCHHHHHHHHHhcC--CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 975543322111 1112222222 23789999999999999999998765
No 137
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.56 E-value=2.1e-14 Score=105.48 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=84.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ...+++.+++|++... ..+ +..+.++||||+... .+....+.+ ...+.....+|++++|+|+
T Consensus 195 Lln~L~~~--~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~-lp~~lve~f----~~tl~~~~~aD~il~VvD~ 267 (364)
T 2qtf_A 195 LFNSLTGL--TQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG-IPPQIVDAF----FVTLSEAKYSDALILVIDS 267 (364)
T ss_dssp HHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSS-CCGGGHHHH----HHHHHGGGGSSEEEEEEET
T ss_pred HHHHHHCC--CccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc-CCHHHHHHH----HHHHHHHHhCCEEEEEEEC
Confidence 57899988 3467888998876543 333 456899999997332 111122222 2334455677999999998
Q ss_pred CCCCCccHH---HHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHH
Q 031293 78 KWGVKPRDH---ELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRT 151 (162)
Q Consensus 78 ~~~~~~~~~---~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~ 151 (162)
+.+...... .+...+.. .+.|+++|.||+|+.+.. ..+..+..............+++++||++|.|++++++
T Consensus 268 s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 268 TFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHH
Confidence 765311111 12233433 368999999999998643 22212222122222201113679999999999999999
Q ss_pred HHHHhhh
Q 031293 152 VLSKIAR 158 (162)
Q Consensus 152 ~i~~~~~ 158 (162)
+|.+.+.
T Consensus 347 ~I~~~l~ 353 (364)
T 2qtf_A 347 KIYQLAT 353 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988664
No 138
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.56 E-value=2.7e-14 Score=99.76 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=90.7
Q ss_pred ChhcccCCCCceeccCCC-CcceEEEE--EEe-CCceEEEcCCCCcccccCHHHHHHH-HHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKP-GLTQTINF--FKL-GTKLCLVDLPGYGFAYAKEEVKDAW-EELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~-g~t~~~~~--~~~-~~~~~ivDtpG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++. .....+..+ |+|+.... ... +.++.++||||+..... ...+.+ ......+......+|++++|+
T Consensus 37 lin~l~~~-~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~~~i~~~~~~~~~~~d~il~V~ 113 (247)
T 3lxw_A 37 TGNSILGQ-RRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQV--SKTDPGCEERGHCYLLSAPGPHALLLVT 113 (247)
T ss_dssp HHHHHHTS-CCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTH--HHHSTTSHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHhCC-CCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCC--CcHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 57999988 344433333 46664433 233 55699999999854321 110111 222233334446789999999
Q ss_pred ecCCCCCccHHHHHHHHHHh------CCceEEEEeccCCCCcHHHHHHH-----HHHHHHHHhcCCCCCCeEEeecCC--
Q 031293 76 DTKWGVKPRDHELISLMERS------QTKYQVVLTKTDTVFPIDVARRA-----MQIEESLKANNSLVQPVMMVSSKS-- 142 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~------~~~~ivv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~Sa~~-- 142 (162)
|+.. ++..+..+++.+... +.|++++.||+|+.+.. ..+.+ +.++..+...+. +++.+++..
T Consensus 114 d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~g~---~~~~~~~~~~~ 188 (247)
T 3lxw_A 114 QLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAECGG---RVCAFDNRATG 188 (247)
T ss_dssp ETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT---CEEECCTTCCH
T ss_pred eCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHcCC---eEEEEeCCCCc
Confidence 9974 666666667766653 68999999999997533 22222 234555555543 566666554
Q ss_pred ---CCCHHHHHHHHHHhhh
Q 031293 143 ---GAGIRSLRTVLSKIAR 158 (162)
Q Consensus 143 ---~~g~~~l~~~i~~~~~ 158 (162)
+.|+++|++.|.+.++
T Consensus 189 ~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 189 REQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5899999999988765
No 139
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.56 E-value=1.6e-14 Score=97.39 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=70.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHH---HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-----CCceEEE
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELV---KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVV 102 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-----~~~~ivv 102 (162)
.++.+|||||+... .... ..+++ .+|++++|+|+..+.......+..++... ++|+++|
T Consensus 69 ~~l~i~Dt~G~~~~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv 135 (196)
T 3llu_A 69 VNFQIWDFPGQMDF----------FDPTFDYEMIFR---GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135 (196)
T ss_dssp CCEEEEECCSSCCT----------TCTTCCHHHHHH---TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEEEECCCCHHH----------Hhhhhhcccccc---cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 46999999998331 1111 34443 35999999999876323333344444432 6899999
Q ss_pred EeccCCCCcHHHH----HHHHHHHHHHHhcC--CCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 103 LTKTDTVFPIDVA----RRAMQIEESLKANN--SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 103 ~nK~Dl~~~~~~~----~~~~~~~~~~~~~~--~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+||+|+.+..... .......+.+.... ....+++++||++ .|+++++..+.+.+
T Consensus 136 ~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 136 IHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred EeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 9999998643221 11111112222211 1235899999999 99999999998653
No 140
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.56 E-value=9.4e-15 Score=98.05 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=72.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHH----HHHHH-----hCCceEEE
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI----SLMER-----SQTKYQVV 102 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~----~~l~~-----~~~~~ivv 102 (162)
++.++||||+... ......++ +.+|++++|+|+..+....+.+.+ .++.. .++|+++|
T Consensus 75 ~~~i~Dt~G~~~~----------~~~~~~~~---~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv 141 (198)
T 3t1o_A 75 RFHLYTVPGQVFY----------NASRKLIL---RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQ 141 (198)
T ss_dssp EEEEEECCSCCSC----------SHHHHHHT---TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEE
T ss_pred EEEEEeCCChHHH----------HHHHHHHH---hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 4889999998322 33344444 346999999999854333333333 33333 36899999
Q ss_pred EeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 103 LTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 103 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+||+|+.+.... +.+++.+...+. .+++++||++|.|+++++++|.+.+.
T Consensus 142 ~NK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 142 VNKRDLPDALPV----EMVRAVVDPEGK--FPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp EECTTSTTCCCH----HHHHHHHCTTCC--SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEchhcccccCH----HHHHHHHHhcCC--ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 999999754222 233344443321 38999999999999999999987653
No 141
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.56 E-value=5e-15 Score=98.07 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=80.1
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. ..+..++++.... ....+ .++.++||||+... ......++. .+|++++|+
T Consensus 25 li~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~ 88 (181)
T 2fn4_A 25 LTIQFIQSY---FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF----------GAMREQYMR---AGHGFLLVF 88 (181)
T ss_dssp HHHHHHHSS---CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT----------SCCHHHHHH---HCSEEEEEE
T ss_pred HHHHHHhCc---CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhh----------HHHHHHHHh---hCCEEEEEE
Confidence 467777662 2334444443222 22333 25889999998332 122333333 349999999
Q ss_pred ecCCCCCccH-HHHHHHH-H---HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPRD-HELISLM-E---RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l-~---~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|...+.+-.. ..++..+ . ..++|+++|+||+|+.+...... +.........+ .+++++||++|.|+++++
T Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 89 AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SEASAFGASHH---VAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHHHHHHHHcC---CeEEEecCCCCCCHHHHH
Confidence 9876321111 1222222 2 23689999999999874322211 11222223232 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
++|.+.+.
T Consensus 164 ~~l~~~~~ 171 (181)
T 2fn4_A 164 EQLVRAVR 171 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988664
No 142
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=3.1e-14 Score=95.77 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=68.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCcc-HHHHHHHHHH-----hCCceEEEEec
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPR-DHELISLMER-----SQTKYQVVLTK 105 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~-~~~~~~~l~~-----~~~~~ivv~nK 105 (162)
.+.++||||+... ......++. .+|++++|+|+..+.+-. ...++..+.. .++|+++|+||
T Consensus 57 ~~~l~Dt~G~~~~----------~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 57 TLQITDTTGSHQF----------PAMQRLSIS---KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEECCGGGSC----------HHHHHHHHH---HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEeCCChHHh----------HHHHHHhhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 5889999998322 233344433 359999999987532111 1123333322 26899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+|+.+...... .........+ .+++++||++|.|+++++++|.+.+.
T Consensus 124 ~Dl~~~~~~~~---~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 124 CDETQREVDTR---EAQAVAQEWK---CAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp TTCSSCSSCHH---HHHHHHHHHT---CEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred ccCCccccCHH---HHHHHHHHhC---CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 99975322111 1222222222 48999999999999999999988664
No 143
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.55 E-value=9.5e-14 Score=96.41 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=83.7
Q ss_pred ChhcccCCCCceeccCCC--CcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKP--GLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~--g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. . ..+..| ++|...... .. +.++.+|||||++....... +....+...+.....++|++++|+
T Consensus 45 lin~l~g~~-~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~ 120 (239)
T 3lxx_A 45 TGNSILGRK-V-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA--ETSKEIIRCILLTSPGPHALLLVV 120 (239)
T ss_dssp HHHHHHTSC-C-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH--HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred HHHHHcCCC-c-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH--HHHHHHHHHHHhcCCCCcEEEEEe
Confidence 578899883 2 344444 566544432 33 45799999999866532211 111233344444456779999999
Q ss_pred ecCCCCCccHHHHHHHHH-----HhCCceEEEEeccCCCCcHHHHHHH----HHHHHHHHhcCCCCCCeEEeecCCC---
Q 031293 76 DTKWGVKPRDHELISLME-----RSQTKYQVVLTKTDTVFPIDVARRA----MQIEESLKANNSLVQPVMMVSSKSG--- 143 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~-----~~~~~~ivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~Sa~~~--- 143 (162)
|+. .++..+...+..+. ....|+++|+||+|+.......+.+ +.+++.+...+. .++++++..+
T Consensus 121 d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~---~~~~~~~~~~~~~ 196 (239)
T 3lxx_A 121 PLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD---RYCALNNKATGAE 196 (239)
T ss_dssp ETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS---SEEECCTTCCHHH
T ss_pred eCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC---EEEEEECCCCccc
Confidence 986 34445555554443 2346999999999998655444222 234444554443 6677776644
Q ss_pred --CCHHHHHHHHHHhhh
Q 031293 144 --AGIRSLRTVLSKIAR 158 (162)
Q Consensus 144 --~g~~~l~~~i~~~~~ 158 (162)
.++.+|+..+.+.+.
T Consensus 197 ~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 197 QEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 688899988877653
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.54 E-value=7.6e-15 Score=99.94 Aligned_cols=112 Identities=17% Similarity=0.027 Sum_probs=70.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ......+ .+.+|++++|+|...+.+-... .++..+... ++|+++|+||+|
T Consensus 58 ~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 124 (212)
T 2j0v_A 58 NLGLWDTAGQEDY----------SRLRPLS---YRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124 (212)
T ss_dssp EEEEECCCCCCCC----------CC--CGG---GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred EEEEEECCCcHHH----------HHHHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHH
Confidence 5899999998332 1122223 3456999999998764222121 344455443 789999999999
Q ss_pred CCCcHHHHH------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 108 TVFPIDVAR------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+...... ..+...+.....+. .+++++||++|.|+++++++|.+.+.
T Consensus 125 l~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 125 LRDDKGYLADHTNVITSTQGEELRKQIGA--AAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp HHTCHHHHHTCSSCCCHHHHHHHHHHHTC--SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhCccccccccCCCCHHHHHHHHHHcCC--ceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 875443200 01222233333321 48999999999999999999987653
No 145
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.54 E-value=2.6e-15 Score=99.70 Aligned_cols=111 Identities=17% Similarity=0.022 Sum_probs=68.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+... ......+ .+.+|++++|+|+..+.+-... .++..+... ++|+++|+||+|
T Consensus 57 ~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (182)
T 3bwd_D 57 NLGLWDTAGQEDY----------NRLRPLS---YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123 (182)
T ss_dssp -CEEECCCC-CTT----------TTTGGGG---GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHH
T ss_pred EEEEEECCCChhh----------hhhHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechh
Confidence 4679999998321 1222222 3456999999998764322221 244445443 689999999999
Q ss_pred CCCcHHHHH--------HHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVAR--------RAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+...... ..+...+.....+ ..+++++||++|.|+++++++|.+.+
T Consensus 124 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 124 LRDDKQFFIDHPGAVPITTVQGEELKKLIG--APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHTCHHHHHHC--CCCCCHHHHHHHHHHHT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhcCcccccccccCCCCCHHHHHHHHHHcC--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 875543200 1112222333232 14899999999999999999998764
No 146
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=2.3e-15 Score=117.69 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=61.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.+++++||||| .+|..+..++++.+|++++|+|+.+++..++..+++.+.+.++|.++++||+|..
T Consensus 66 ~~~iNlIDTPGH-------------~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 66 NTKVNIIDTPGH-------------MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp SCBCCCEECCCS-------------SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred CEEEEEEECCCc-------------HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 667999999999 6777788888888999999999999999999999999999999999999999976
No 147
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.53 E-value=2.4e-15 Score=114.67 Aligned_cols=136 Identities=19% Similarity=0.164 Sum_probs=81.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++.. .... .| |....+..+ +.++.++||||.... ......+ .+.+|++++|+|+
T Consensus 338 Ll~~l~~~~-~~~~--~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~---~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 338 ILYKLKLGQ-SVTT--IP--TVGFNVETVTYKNVKFNVWDVGGQDKI----------RPLWRHY---YTGTQGLIFVVDC 399 (497)
T ss_dssp HHHHHHHSS-CCCC--CC--CSSEEEEEEESSSCEEEEEEECCCGGG----------SGGGGGG---GTTCCEEEEEEET
T ss_pred HHHHHhcCC-CCCc--CC--ccceeEEEEEeCCEEEEEEECCCcHHH----------HHHHHHH---hccCCEEEEEEEC
Confidence 578888773 2222 23 333333222 456999999998221 2222233 3456999999999
Q ss_pred CCCCCc--cHHHHHHHHHH---hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhc--CCCCCCeEEeecCCCCCHHHHH
Q 031293 78 KWGVKP--RDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKAN--NSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 78 ~~~~~~--~~~~~~~~l~~---~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
..+.+- ...++...+.. .++|+++|+||+|+.+..... .+.+.++.. ....++++++||++|.|+++++
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHH----HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHH----HHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 764211 11222223222 368999999999997543222 222222211 1123469999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
++|.+.++
T Consensus 476 ~~l~~~~~ 483 (497)
T 3lvq_E 476 TWLTSNYK 483 (497)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 99998765
No 148
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.53 E-value=1.4e-14 Score=99.34 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=69.7
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHH---HhCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLME---RSQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~---~~~~~~ivv~nK~D 107 (162)
++.+|||+|... +..+...|++. +++++++.|....-+-.. ..++..+. ..++|+++|.||+|
T Consensus 63 ~l~iwDtaGqe~----------~~~l~~~~~~~---a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 63 RLQLWDTAGLER----------FRSLIPSYIRD---SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEECCSCTTT----------CGGGHHHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEECCCchh----------hhhHHHHHhcc---ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 478999999822 24455666554 489999998765321111 12333332 23689999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+...+.. +..++.....+ .+++++||++|.|++++++.|.+.+
T Consensus 130 l~~~r~V~~--~e~~~~a~~~~---~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 130 LADKRQVSI--EEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp CGGGCCSCH--HHHHHHHHHHT---CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred hHhcCcccH--HHHhhHHHHhC---CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 864332211 12233334343 4799999999999999999998765
No 149
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.53 E-value=1.4e-14 Score=95.87 Aligned_cols=133 Identities=6% Similarity=-0.044 Sum_probs=76.4
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++.. .....++.+... ......+ .++.++||||... ..++ +.+|++++|+|.
T Consensus 23 li~~l~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~---------------~~~~---~~~d~~ilv~D~ 82 (178)
T 2iwr_A 23 LIHRFLTGS-YQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD---------------AKFS---GWADAVIFVFSL 82 (178)
T ss_dssp HHHHHHHSC-CCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC---------------HHHH---HHCSEEEEEEET
T ss_pred HHHHHHhCC-CCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch---------------hHHH---HhCCEEEEEEEC
Confidence 467777662 332333333222 1222332 2478999999822 1222 235999999998
Q ss_pred CCCCCccHHH-HHHHHHH------hCCceEEEEeccCCCC--cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 78 KWGVKPRDHE-LISLMER------SQTKYQVVLTKTDTVF--PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 78 ~~~~~~~~~~-~~~~l~~------~~~~~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
..+.+-.... ++.++.. .++|+++|+||+|+.. ..... .+..++.....+ ..+++++||++|.|+++
T Consensus 83 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~--~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 83 EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG--DARARALXADMK--RCSYYETXATYGLNVDR 158 (178)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC--HHHHHHHHHHHS--SEEEEEEBTTTTBTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC--HHHHHHHHHhhc--CCeEEEEeccccCCHHH
Confidence 7643222221 2223332 2689999999999841 11110 012222222221 14899999999999999
Q ss_pred HHHHHHHhh
Q 031293 149 LRTVLSKIA 157 (162)
Q Consensus 149 l~~~i~~~~ 157 (162)
+++++.+.+
T Consensus 159 lf~~l~~~~ 167 (178)
T 2iwr_A 159 VFQEVAQKV 167 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 150
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.52 E-value=7.5e-14 Score=94.08 Aligned_cols=139 Identities=11% Similarity=-0.023 Sum_probs=80.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEE--EEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTIN--FFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~--~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. ......|+++.+.. .+.++. ++.++||||..... ..+...+++ .+|++++|+
T Consensus 39 Li~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~~~---~~d~~ilv~ 104 (195)
T 3cbq_A 39 LAGTFGGLQ--GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWLRDHCLQ---TGDAFLIVF 104 (195)
T ss_dssp HHHHTCCEE--CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHHHHHHHH---HCSEEEEEE
T ss_pred HHHHHHhcc--CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhhHHHhhc---cCCEEEEEE
Confidence 467776542 12233444443322 223332 47789999983320 112333333 359999999
Q ss_pred ecCCCCCcc-HHHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPR-DHELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~-~~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|.....+-. ...++..+.. .++|+++|.||+|+.+...+. .+..++.....+ .+++++||++|.|+++++
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a~~~~---~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 105 SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAGTLS---CKHIETSAALHHNTRELF 179 (195)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHHHHTT---CEEEEEBTTTTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHHHHhC---CEEEEEcCCCCCCHHHHH
Confidence 987532111 1223333332 268999999999997432211 112222333333 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
+++.+.+.
T Consensus 180 ~~l~~~i~ 187 (195)
T 3cbq_A 180 EGAVRQIR 187 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988664
No 151
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.52 E-value=1.8e-16 Score=107.09 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=74.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++........+..+.+.....+..+. .+.++||||.... ......+ .+.+|++++|+|+
T Consensus 49 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~ 115 (199)
T 3l0i_B 49 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITSSY---YRGAHGIIVVYDV 115 (199)
T ss_dssp TTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC----------CCCSCC-----CCCSEEEECC-C
T ss_pred HHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH----------HHHHHHH---hhcCCEEEEEEEC
Confidence 5677776622111122222223333344432 5889999997322 1112222 2456999999998
Q ss_pred CCCCCccH-HHHHHHHHHh---CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS---QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~---~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+...... +..+......+ .+++++||++|.|+++++.+|
T Consensus 116 ~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 116 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFADSLG---IPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp CCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS--CC-CHHHHTTT---CCBCCCCC---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH--HHHHHHHHHcC---CeEEEEECCCCCCHHHHHHHH
Confidence 86432111 1233334332 689999999999974322110 11222233333 489999999999999999999
Q ss_pred HHhhh
Q 031293 154 SKIAR 158 (162)
Q Consensus 154 ~~~~~ 158 (162)
.+.+.
T Consensus 191 ~~~l~ 195 (199)
T 3l0i_B 191 AAEIK 195 (199)
T ss_dssp TTTTT
T ss_pred HHHHH
Confidence 87654
No 152
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.51 E-value=6.2e-16 Score=106.10 Aligned_cols=137 Identities=13% Similarity=-0.003 Sum_probs=86.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeC---CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG---TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+++........++.+|+|.....+..+ ..+.++||||+... ......++. .+|++++|+|+
T Consensus 31 li~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~---~~~~~i~v~d~ 97 (221)
T 3gj0_A 31 FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF----------GGLRDGYYI---QAQCAIIMFDV 97 (221)
T ss_dssp HHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT----------SCCCHHHHT---TCCEEEEEEET
T ss_pred HHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH----------hHHHHHHHh---cCCEEEEEEEC
Confidence 456643332345567888888776666553 35889999997322 122333433 45999999998
Q ss_pred CCCCCccH-HHHHHHHHHh--CCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 78 KWGVKPRD-HELISLMERS--QTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 78 ~~~~~~~~-~~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
..+.+-.. ..++..+... ++|+++|+||+|+.+...... ........+ .+++++||++|.|+++++.+|.
T Consensus 98 ~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 98 TSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK----SIVFHRKKN---LQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp TCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGG----GCCHHHHHT---CEEEECBGGGTBTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHH----HHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHH
Confidence 86432111 1233333332 789999999999975432211 111222222 4899999999999999999998
Q ss_pred Hhh
Q 031293 155 KIA 157 (162)
Q Consensus 155 ~~~ 157 (162)
+.+
T Consensus 171 ~~l 173 (221)
T 3gj0_A 171 RKL 173 (221)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 153
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.51 E-value=3.8e-14 Score=95.64 Aligned_cols=140 Identities=9% Similarity=-0.032 Sum_probs=78.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++.. ..+..++++.+... ...+. .+.++||||+... ......+ ...+|++++|+
T Consensus 36 l~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~---~~~~~~~i~v~ 99 (201)
T 2q3h_A 36 LVVSYTTNG---YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF----------DKLRPLC---YTNTDIFLLCF 99 (201)
T ss_dssp HHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC----------SSSGGGG---GTTCSEEEEEE
T ss_pred HHHHHHhCC---CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH----------HHHhHhh---cCCCcEEEEEE
Confidence 467777662 23344444433222 22332 4779999998322 1112222 24569999999
Q ss_pred ecCCCCCccHH--HHHHHHHHh--CCceEEEEeccCCCCcHHHHH----------HHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 76 DTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDTVFPIDVAR----------RAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 76 d~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~Dl~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
|+..+.+-... .++..+... ++|+++|+||+|+........ ..+.........+ ..+++++||+
T Consensus 100 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~ 177 (201)
T 2q3h_A 100 SVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK--AASYIECSAL 177 (201)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECCTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC--CcEEEEEecC
Confidence 98764322221 244444433 789999999999975321100 0112222222222 2489999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 031293 142 SGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 142 ~~~g~~~l~~~i~~~~~ 158 (162)
+|.|+++++++|.+.+.
T Consensus 178 ~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987654
No 154
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.51 E-value=1.9e-15 Score=102.20 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=67.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||+... ......+ .+.+|++++|+|...+.+-.. ..++..+.. .++|+++|+||+
T Consensus 73 ~~~l~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 73 HLHLVDTAGQDEY----------SILPYSF---IIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp EEEEEEECCCCTT----------CCCCGGG---TTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred EEEEEECCCccch----------HHHHHHH---HhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4789999998332 1112222 344699999999875321111 122333322 268999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+.+...... ...+......+ .+++++||++|.|+++++.+|.+.+.
T Consensus 140 Dl~~~~~v~~--~~~~~~~~~~~---~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 140 DLSPEREVQA--VEGKKLAESWG---ATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp TCGGGCCSCH--HHHHHHHHHHT---CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cCccccccCH--HHHHHHHHHhC---CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9874332211 11222223233 48999999999999999999988664
No 155
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.51 E-value=4.3e-15 Score=107.08 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=73.2
Q ss_pred CceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeec-CCCCCccH-HHHHHHHHHhCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDT-KWGVKPRD-HELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~-~~~~~~~~-~~~~~~l~~~~~~~ivv~nK 105 (162)
.++.+|||||+..... .....+.+......++. .+|++++++|+ ..++...+ ..++..+...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK---KQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHH---STTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHc---CCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcC
Confidence 5699999999854211 11122334444555544 45999999996 55555444 46777777778999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---CCCHHHHHHHHHHhhh
Q 031293 106 TDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---GAGIRSLRTVLSKIAR 158 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---~~g~~~l~~~i~~~~~ 158 (162)
+|+.+.... ..+.++..+......+.++.++|+.+ +.|++++++.+.+.++
T Consensus 208 ~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 999854420 11122211111111223445556666 7899999999877654
No 156
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.50 E-value=7.2e-14 Score=107.08 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||+ ..+.....+..+.+|++++|+|+..+.......++..+...++|+++++||+|+.
T Consensus 81 ~~~i~liDTPG~-------------~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGH-------------EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCS-------------TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCC-------------hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc
Confidence 456999999999 3333344445567899999999998887777777777777789999999999997
Q ss_pred Cc
Q 031293 110 FP 111 (162)
Q Consensus 110 ~~ 111 (162)
..
T Consensus 148 ~~ 149 (529)
T 2h5e_A 148 IR 149 (529)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 157
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=2.3e-14 Score=113.06 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=88.1
Q ss_pred CCceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH-HHHHHHHHhCCceEEEEec
Q 031293 30 GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH-ELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~-~~~~~l~~~~~~~ivv~nK 105 (162)
..++++|||||++.... +.+..+.+..++..|+. ..+|++++|+|++.++...+. .++..+...+.|+++|+||
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNK 226 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 226 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeC
Confidence 44699999999977432 33445667778888876 456999999999988877776 6778888788999999999
Q ss_pred cCCCCcHHHHHHHHHHHH-HHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 106 TDTVFPIDVARRAMQIEE-SLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+|++++..... .+.. ........+.+++++||++|.|+++|++.+.+.
T Consensus 227 iDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 227 LDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cccCCcchhhH---HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 99986543211 1111 000001123478899999999999999999874
No 158
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.49 E-value=2.4e-14 Score=95.63 Aligned_cols=107 Identities=7% Similarity=-0.033 Sum_probs=67.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||+... . +++ .+|++++|+|...+.+-.. ..++..+.. .++|+++|.||+
T Consensus 68 ~l~i~Dt~G~~~~----------~-----~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 68 LLLIRDEGGPPEL----------Q-----FAA---WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp EEEEEECSSSCCH----------H-----HHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECT
T ss_pred EEEEEECCCChhh----------h-----eec---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4778999998221 1 322 3599999999876432222 224444443 357999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
|+..........+...+.....+ ..+++++||++|.|+++++.++.+.+.
T Consensus 130 Dl~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 130 AISAANPRVIDDSRARKLSTDLK--RCTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp TCBTTBCCCSCHHHHHHHHHHTT--TCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC--CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 98421110000112333333333 248999999999999999999988654
No 159
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=3.2e-14 Score=95.75 Aligned_cols=108 Identities=14% Similarity=0.056 Sum_probs=67.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
.+.++||||+.. ......++. .+|++++|+|+..+.+-.. ..++..+.. .++|+++|+||+
T Consensus 77 ~~~l~Dt~G~~~-----------~~~~~~~~~---~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 77 SMEILDTAGQED-----------TIQREGHMR---WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEECCCCCC-----------CHHHHHHHH---HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEECCCCCc-----------ccchhhhhc---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence 488999999843 112233332 3499999999876321111 122333322 368999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCC-CHHHHHHHHHHhhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGA-GIRSLRTVLSKIAR 158 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~l~~~i~~~~~ 158 (162)
|+.+..... .+...+.....+ .+++++||++|. |+++++++|.+.+.
T Consensus 143 Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 143 DLDHSRQVS--TEEGEKLATELA---CAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp GGGGGCCSC--HHHHHHHHHHHT---SEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred ccccccccC--HHHHHHHHHHhC---CeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 996432211 011222222222 489999999999 99999999987664
No 160
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.49 E-value=2.2e-14 Score=98.09 Aligned_cols=112 Identities=15% Similarity=0.028 Sum_probs=70.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||.... ..+...+ .+.+|++++|+|...+.+-.. ..++..+... +.|+++|+||+|
T Consensus 76 ~l~i~Dt~G~~~~----------~~~~~~~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 142 (214)
T 3q3j_B 76 ELSLWDTSGSPYY----------DNVRPLC---YSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142 (214)
T ss_dssp EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGG
T ss_pred EEEEEECCCCHhH----------HHHHHHH---cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 5889999998221 2222233 345699999999986432222 2344555444 689999999999
Q ss_pred CCCcHHHH----------HHHHHHHHHHHhcCCCCCCeEEeecCCCCC-HHHHHHHHHHhhh
Q 031293 108 TVFPIDVA----------RRAMQIEESLKANNSLVQPVMMVSSKSGAG-IRSLRTVLSKIAR 158 (162)
Q Consensus 108 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g-~~~l~~~i~~~~~ 158 (162)
+.+..... ...+...+.....+. .+++++||++|.| +++++.++.+.+.
T Consensus 143 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA--EIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC--SEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhcccccCccCHHHHHHHHHHcCC--CEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 96421100 001122223333321 3899999999998 9999999987653
No 161
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.23 E-value=2.6e-15 Score=101.77 Aligned_cols=110 Identities=14% Similarity=0.001 Sum_probs=68.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~D 107 (162)
.+.++||||+.. +......++ ..+|++++|+|+..+.+-... .++..+... ++|+++|+||+|
T Consensus 79 ~l~i~Dt~G~~~----------~~~~~~~~~---~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~D 145 (204)
T 3th5_A 79 NLGLWDTAGQED----------YDRLRPLSY---PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145 (204)
Confidence 466999999821 222333333 346999999998764322222 344444443 789999999999
Q ss_pred CCCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 108 TVFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 108 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+.+.....+. .+...+.....+ ..+++++||++|.|+++++++|.+.
T Consensus 146 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 9754321110 011111222121 1378999999999999999998764
No 162
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.48 E-value=4.1e-13 Score=106.07 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=53.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.+|||||| ..+.....+..+.+|++++|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 82 ~~i~liDTPG~-------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDTPGH-------------VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeCCCc-------------cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 56999999999 33333444444567999999999988877777777777777899999999999874
Q ss_pred c
Q 031293 111 P 111 (162)
Q Consensus 111 ~ 111 (162)
.
T Consensus 149 ~ 149 (704)
T 2rdo_7 149 A 149 (704)
T ss_pred c
Confidence 3
No 163
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=100.80 Aligned_cols=124 Identities=19% Similarity=0.327 Sum_probs=63.6
Q ss_pred ceEEEcCCCCcccccCH----HHHHHHHHHHHHHHhcCcc----------cceeEEEeec-CCCCCccHHHHHHHHHHhC
Q 031293 32 KLCLVDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVS----------LKRVCLLIDT-KWGVKPRDHELISLMERSQ 96 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------~~~vi~vid~-~~~~~~~~~~~~~~l~~~~ 96 (162)
++.++||||+|+..... .........+..|+..... ++++++++++ ..++...+..++..+. .+
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~ 174 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK 174 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cC
Confidence 58999999997652211 0111112222344443332 3467777775 6677776666666553 46
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC---HHHHHHHHHHhhhh
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAG---IRSLRTVLSKIARF 159 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g---~~~l~~~i~~~~~~ 159 (162)
+|+++|+||+|+....+.....+.+.+.+...+ .+++++||+++.| +..+...|.+.+++
T Consensus 175 ~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~---i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 175 VNIVPVIAKADTLTLKERERLKKRILDEIEEHN---IKIYHLPDAESDEDEDFKEQTRLLKASIPF 237 (361)
T ss_dssp SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC----CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC---CCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence 899999999999977666554455655555443 5899999999887 33344444444443
No 164
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=1.8e-13 Score=108.35 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=59.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
..++++||||| .+|..+..++++.+|++++|+|+.+++..++...++.+...++|.++++||+|..
T Consensus 85 ~~iNlIDTPGH-------------vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 85 YRVNVIDTPGH-------------VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EEEEEECCCSC-------------TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred EEEEEEeCCCC-------------cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 35899999999 6666777777778899999999999999999999999998999999999999986
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.46 E-value=9.3e-14 Score=100.46 Aligned_cols=110 Identities=14% Similarity=-0.012 Sum_probs=69.7
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHH--HHHHHHHHh--CCceEEEEeccCC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDH--ELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~--~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
+.++||||+... ...... ....+|++++|+|+..+.+-... .++..+... ++|+++|+||+|+
T Consensus 205 ~~l~Dt~G~~~~----------~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 205 LGLWDTAGLEDY----------DRLRPL---SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEEECCCGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred EEEEeCCCchhh----------hHHHHH---hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence 569999998321 111222 23557999999998764322222 233444444 7899999999998
Q ss_pred CCcHHHHHH----------HHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARR----------AMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.+....... .+...+.....+ ..+++++||++|.|+++++++|.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIG--AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT--CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccchhhhccccccccccHHHHHHHHHHcC--CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 654322111 112222333332 24899999999999999999998765
No 166
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.45 E-value=6.4e-14 Score=93.74 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=66.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH------hCCceEEEEe
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER------SQTKYQVVLT 104 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~------~~~~~ivv~n 104 (162)
.+.++||||+... .. +..+++ .+|++++|+|...+.+-.. ..++..+.. .++|+++|+|
T Consensus 70 ~l~i~Dt~G~~~~----------~~-~~~~~~---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 70 HLRVMDTADLDTP----------RN-CERYLN---WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEECCC---C----------CC-THHHHT---TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEECCCCCcc----------hh-HHHHHh---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 4789999998321 11 223433 3599999999875321111 123333332 3789999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec-CCCCCHHHHHHHHHHhhh
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS-KSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa-~~~~g~~~l~~~i~~~~~ 158 (162)
|+|+.+...... +...+.....+ .+++++|| ++|.|+++++++|.+.+.
T Consensus 136 K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 136 KLDMAQYRQVTK--AEGVALAGRFG---CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CGGGGGGCSSCH--HHHHHHHHHHT---CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CcchhhcCccCH--HHHHHHHHHcC---CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 999864322110 12222333333 48999999 899999999999987653
No 167
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.44 E-value=1.3e-13 Score=91.84 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=68.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D 107 (162)
.+.++||||+... ...... ....+|++++|+|...+.+-.. ..++..+.. .+.|+++|+||+|
T Consensus 56 ~~~i~Dt~G~~~~----------~~~~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 122 (184)
T 1m7b_A 56 ELSLWDTSGSPYY----------DNVRPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122 (184)
T ss_dssp EEEEEEECCSGGG----------TTTGGG---GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEEECCCChhh----------hhhHHh---hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcch
Confidence 4889999998221 111222 2345699999999876422222 123344443 2689999999999
Q ss_pred CCCcHHHH-H---------HHHHHHHHHHhcCCCCCCeEEeecC-CCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVA-R---------RAMQIEESLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~-~---------~~~~~~~~~~~~~~~~~~i~~~Sa~-~~~g~~~l~~~i~~~~ 157 (162)
+.+..... + ..+...+.....+ ..+++++||+ +|.|+++++..+.+.+
T Consensus 123 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred hhcchhhHhhhhhcccCCCCHHHHHHHHHHcC--CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 97432110 0 0112223333332 2489999999 6899999999998764
No 168
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.42 E-value=2e-13 Score=92.68 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=68.3
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH--HHHHHHHHH--hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD--HELISLMER--SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~--~~~~~~l~~--~~~~~ivv~nK~D 107 (162)
++.++||||+... ......+ ...+|++++|+|+..+.+-.. ..++..+.. .+.|+++|+||+|
T Consensus 77 ~l~i~Dt~G~~~~----------~~~~~~~---~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 143 (205)
T 1gwn_A 77 ELSLWDTSGSPYY----------DNVRPLS---YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143 (205)
T ss_dssp EEEEEEECCSGGG----------TTTGGGG---CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGG
T ss_pred EEEEEeCCCcHhh----------hHHHHhh---ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechh
Confidence 4889999998221 1122222 345799999999876422222 123344443 2689999999999
Q ss_pred CCCcHHHH-H---------HHHHHHHHHHhcCCCCCCeEEeecC-CCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVA-R---------RAMQIEESLKANNSLVQPVMMVSSK-SGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~-~---------~~~~~~~~~~~~~~~~~~i~~~Sa~-~~~g~~~l~~~i~~~~ 157 (162)
+.+..... + ..+..++.....+ ..+++++||+ +|.|+++++..+.+.+
T Consensus 144 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIG--AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp GGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhcccccCCCCHHHHHHHHHHcC--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 97432110 0 0112233333332 1489999999 6899999999998754
No 169
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.42 E-value=1.9e-12 Score=86.30 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=69.3
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc--cHHHHHHHHHH--hCCceEEEEecc
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP--RDHELISLMER--SQTKYQVVLTKT 106 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~--~~~~~~~~l~~--~~~~~ivv~nK~ 106 (162)
..+.++||||. +.+......++. .++++++|.|.+.+... .-..++..+.. .+.|+++|.||+
T Consensus 56 ~~~~i~Dt~G~----------~~~~~~~~~~~~---~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (184)
T 2zej_A 56 LVLNVWDFAGR----------EEFYSTHPHFMT---QRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122 (184)
T ss_dssp CEEEEEEECSH----------HHHHTTSHHHHH---HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred eEEEEEecCCC----------HHHHHhhHHHcc---CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence 35889999998 222333334443 34888889998764211 11223333332 268999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHH-hcCC-CCCCeEEeecCCCC-CHHHHHHHHHHhhhh
Q 031293 107 DTVFPIDVARRAMQIEESLK-ANNS-LVQPVMMVSSKSGA-GIRSLRTVLSKIARF 159 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~Sa~~~~-g~~~l~~~i~~~~~~ 159 (162)
|+.+............+.+. ..+. ...+++++||+++. |++++++.|.+.+..
T Consensus 123 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp GGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 99865443322222222221 1221 00128999999996 999999999876653
No 170
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.42 E-value=4.5e-13 Score=105.66 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=55.3
Q ss_pred CCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|.|....... . +.++.++||||+. .+.....+..+.+|++++|+|+..+....+...+..+.
T Consensus 60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~-------------df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~ 126 (691)
T 1dar_A 60 ERGITITAAVTTCFWKDHRINIIDTPGHV-------------DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126 (691)
T ss_dssp -------CCEEEEEETTEEEEEECCCSST-------------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred hcccccccceEEEEECCeEEEEEECcCcc-------------chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH
Confidence 455555433322 2 4569999999992 22223333334569999999999988887777777777
Q ss_pred HhCCceEEEEeccCCCCc
Q 031293 94 RSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 94 ~~~~~~ivv~nK~Dl~~~ 111 (162)
..++|+++|+||+|+...
T Consensus 127 ~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 127 KYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HTTCCEEEEEECTTSTTC
T ss_pred HcCCCEEEEEECCCcccC
Confidence 789999999999999753
No 171
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=5.1e-13 Score=105.41 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCCcceEEEEE--Ee-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 17 KPGLTQTINFF--KL-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 17 ~~g~t~~~~~~--~~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+|+|...... .. +.++.++||||+.+. ...+..++ +.+|++++|+|+..+....+...+..+.
T Consensus 58 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df----------~~~~~~~l---~~aD~~llVvDa~~g~~~~~~~~~~~~~ 124 (693)
T 2xex_A 58 DRGITITSAATTAAWEGHRVNIIDTPGHVDF----------TVEVERSL---RVLDGAVTVLDAQSGVEPQTETVWRQAT 124 (693)
T ss_dssp ------CCSEEEEEETTEEEEEECCCCCSSC----------CHHHHHHH---HHCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred hcCceEeeeeEEEEECCeeEEEEECcCCcch----------HHHHHHHH---HHCCEEEEEECCCCCCcHHHHHHHHHHH
Confidence 45666543332 22 456999999999432 12223333 3469999999999888888878888788
Q ss_pred HhCCceEEEEeccCCCCcHHHHHHHHHHHHH
Q 031293 94 RSQTKYQVVLTKTDTVFPIDVARRAMQIEES 124 (162)
Q Consensus 94 ~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~ 124 (162)
..++|+++|+||+|+.... .....+.+++.
T Consensus 125 ~~~~p~ilviNK~Dl~~~~-~~~~~~~l~~~ 154 (693)
T 2xex_A 125 TYGVPRIVFVNKMDKLGAN-FEYSVSTLHDR 154 (693)
T ss_dssp HTTCCEEEEEECTTSTTCC-HHHHHHHHHHH
T ss_pred HcCCCEEEEEECCCccccc-hHHHHHHHHHH
Confidence 7899999999999997532 23333444443
No 172
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=6.3e-14 Score=103.98 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=32.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE-----------------------eC----CceEEEcCCCCcccccCHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK-----------------------LG----TKLCLVDLPGYGFAYAKEEVKDA 53 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~-----------------------~~----~~~~ivDtpG~~~~~~~~~~~~~ 53 (162)
|+|+|++. . +.++++|++|++..... .+ .++.++||||+.... ..
T Consensus 16 L~n~L~~~-~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a------~~ 87 (397)
T 1wxq_A 16 FFSAATLV-D-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA------HE 87 (397)
T ss_dssp HHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--------------
T ss_pred HHHHHHCC-C-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch------hh
Confidence 68999998 3 77899999998554321 11 258899999984321 01
Q ss_pred HHHHHHHHHhcCcccceeEEEeecCCC
Q 031293 54 WEELVKEYVSTRVSLKRVCLLIDTKWG 80 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~vi~vid~~~~ 80 (162)
...+...++...+.+|++++|+|+..+
T Consensus 88 ~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 88 GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------CCCSSTTCSEEEEEEETTCC
T ss_pred hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 123345555666788999999999764
No 173
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=7.3e-13 Score=90.40 Aligned_cols=140 Identities=13% Similarity=0.029 Sum_probs=75.7
Q ss_pred ChhcccCCCCceeccCCCCcceEE--EEEEeCC---ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTI--NFFKLGT---KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~--~~~~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|++++.. ...++..+.++.+. ....++. ++.++||+|.... ...+... ..+.++++++|.
T Consensus 53 Ll~r~~~~~-~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----------~~~l~~~--~~~~a~~~ilVy 119 (211)
T 2g3y_A 53 LANIFAGVH-DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----------NEWLHDH--CMQVGDAYLIVY 119 (211)
T ss_dssp HHHHHHCCC-CTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----------HHHHHHC--CCCCCSEEEEEE
T ss_pred HHHHHHhCC-CCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----------hhhHHHH--HHhhCCEEEEEE
Confidence 567887652 22233333333221 2223322 3678999997210 1122221 124468888888
Q ss_pred ecCCCCCccH-HHHHHHHHH----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 76 DTKWGVKPRD-HELISLMER----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 76 d~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
|....-+-.. ..+...+.. .++|+++|.||+|+.+...+.. +..+......+ .+++++||++|.|+++++
T Consensus 120 dvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~--~e~~~~a~~~~---~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 120 SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV--SEGRACAVVFD---CKFIETSAAVQHNVKELF 194 (211)
T ss_dssp ETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH--HHHHHHHHHHT---CEEEECBTTTTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH--HHHHHHHHHcC---CEEEEEeCCCCCCHHHHH
Confidence 8764211111 123333332 2689999999999964222111 11111222222 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
.+|.+.+.
T Consensus 195 ~~l~~~i~ 202 (211)
T 2g3y_A 195 EGIVRQVR 202 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987664
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.39 E-value=2.2e-12 Score=101.46 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=53.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||+ ..+.....+..+.+|++++|+|+..+.......++..+...++|+++|+||+|+.
T Consensus 73 ~~~~nliDTpG~-------------~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGY-------------GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCS-------------GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCc-------------cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 456899999999 2333333344455699999999998888888888888888899999999999987
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.37 E-value=1.1e-13 Score=106.46 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=68.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC--CceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ--TKYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~--~~~ivv~nK~Dl 108 (162)
..+.++||||+... ......+++. +|++++|+|++.. .....++..+.... .|+++|+||+|+
T Consensus 98 ~~~~i~Dt~G~e~~----------~~~~~~~l~~---~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl 162 (535)
T 3dpu_A 98 CLFHFWDFGGQEIM----------HASHQFFMTR---SSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDE 162 (535)
T ss_dssp CEEEEECCCSCCTT----------TTTCHHHHHS---SEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTT
T ss_pred EEEEEEECCcHHHH----------HHHHHHHccC---CcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCc
Confidence 46999999997322 1122233332 5999999998754 33445666666654 899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.+..... .+.+++.+...+ .+++++||++|.|+++++.++.+.+.
T Consensus 163 ~~~~~v~--~~~~~~~~~~~~---~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 163 NPSYNIE--QKKINERFPAIE---NRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp CTTCCCC--HHHHHHHCGGGT---TCEEECCC-----CTTHHHHHHHHHT
T ss_pred ccccccC--HHHHHHHHHhcC---CceEEEecCcccCHHHHHHHHHHHHh
Confidence 7543221 123344444333 47999999999999999999988664
No 176
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.35 E-value=2.7e-12 Score=94.08 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||++.. .. .. ...+|++++|+|+..+..... +... ...+|.++|+||+|+.
T Consensus 171 ~~~~iiiDTpGi~~~----------~~---~~---~~~aD~vl~V~d~~~~~~~~~--l~~~--~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 171 GFDVILIETVGVGQS----------EV---AV---ANMVDTFVLLTLARTGDQLQG--IKKG--VLELADIVVVNKADGE 230 (355)
T ss_dssp TCCEEEEEECSCSSH----------HH---HH---HTTCSEEEEEEESSTTCTTTT--CCTT--SGGGCSEEEEECCCGG
T ss_pred CCCEEEEeCCCCCcH----------HH---HH---HHhCCEEEEEECCCCCccHHH--HHHh--HhhcCCEEEEECCCCc
Confidence 456999999998432 11 11 145699999999864321111 0010 1246999999999997
Q ss_pred CcHHHHHHHHHHHHHHHhcC----CCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 110 FPIDVARRAMQIEESLKANN----SLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.........+.+.+.+.... ....+++++||++|.|+++++++|.+.+.
T Consensus 231 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 231 HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 65555555555555543322 11258999999999999999999988764
No 177
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.34 E-value=8.3e-12 Score=88.72 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=71.0
Q ss_pred EEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHH
Q 031293 35 LVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDV 114 (162)
Q Consensus 35 ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~ 114 (162)
+-+.|||- .+..++.......+|+++.|+|++.+.......+.+++ .++|.++|+||+|+.+....
T Consensus 3 i~w~PGhm------------~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~ 68 (282)
T 1puj_A 3 IQWFPGHM------------AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT 68 (282)
T ss_dssp ------CT------------THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH
T ss_pred CcCCchHH------------HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH
Confidence 55789991 24456666667788999999999998777654554444 47899999999999975443
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 115 ARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+. +.+.+...+ .+++++||.++.|++++++.+.+.++
T Consensus 69 ~~----~~~~~~~~g---~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 69 QQ----WKEHFENQG---IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HH----HHHHHHTTT---CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HH----HHHHHHhcC---CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 33 333343322 38999999999999999998877654
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.32 E-value=1.2e-11 Score=87.36 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=69.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe---CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ....++..+++|.....+.. +.++.+|||||++...... +.+...+..++. ...+|++++|+|.
T Consensus 55 Lin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~---~~~~~~i~~~~~-~~~~d~il~v~~~ 129 (270)
T 1h65_A 55 TVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN---DMALNIIKSFLL-DKTIDVLLYVDRL 129 (270)
T ss_dssp HHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHHTT-TCEECEEEEEEES
T ss_pred HHHHHhCC-CcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch---HHHHHHHHHHhh-cCCCCEEEEEEeC
Confidence 58999988 45677888888875544333 4469999999996542111 111222333432 3467999999776
Q ss_pred CC-CCCccHHHHHHHHHHh-C----CceEEEEeccCCCCcH
Q 031293 78 KW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVFPI 112 (162)
Q Consensus 78 ~~-~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~~~ 112 (162)
.. .+...+..++..+... + .|+++|+||+|+.++.
T Consensus 130 d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 130 DAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 43 4555555666666543 3 6899999999997543
No 179
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.31 E-value=4.7e-11 Score=83.70 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=71.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHH-----HHHHHHhCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHEL-----ISLMERSQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~-----~~~l~~~~~~~ivv~nK 105 (162)
..+.++||||.... .. +............. +++++++|+.......+..- .......++|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~------~~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMET------FL-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHH------HH-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred CCEEEEeCCCccch------hh-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEec
Confidence 36999999998211 00 00111122223344 78899999875544433221 12223447899999999
Q ss_pred cCCCCcHHHHHHHHHHH------HH------------------HHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 106 TDTVFPIDVARRAMQIE------ES------------------LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~------~~------------------~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
+|+..........+.++ +. +...+ ...+++++||++|.|+++++++|.+.++.
T Consensus 181 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 181 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL-PPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS-CCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc-CcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 99986543322222111 01 12222 12489999999999999999999987653
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.31 E-value=2.1e-11 Score=85.74 Aligned_cols=105 Identities=19% Similarity=0.192 Sum_probs=67.9
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|+|+|++. ..+.++..+++|....... . +.++.++||||+++..... +.+...+..++. ...+|++++|++.
T Consensus 52 Lin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~---~~~~~~i~~~l~-~~~~~~il~V~~~ 126 (262)
T 3def_A 52 TVNSLIGE-QVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN---HQALELIKGFLV-NRTIDVLLYVDRL 126 (262)
T ss_dssp HHHHHHTS-CCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC---HHHHHHHHHHTT-TCEECEEEEEEES
T ss_pred HHHHHhCC-CCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch---HHHHHHHHHHHh-cCCCCEEEEEEcC
Confidence 57999988 4567788888887555433 2 4569999999996542111 122233444443 3467999999776
Q ss_pred CC-CCCccHHHHHHHHHHh-C----CceEEEEeccCCCC
Q 031293 78 KW-GVKPRDHELISLMERS-Q----TKYQVVLTKTDTVF 110 (162)
Q Consensus 78 ~~-~~~~~~~~~~~~l~~~-~----~~~ivv~nK~Dl~~ 110 (162)
.. .+...+..+++.+... + .|+++|+||+|+.+
T Consensus 127 d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 127 DVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp SCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 43 3545555666666543 2 48999999999863
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=2e-11 Score=90.97 Aligned_cols=142 Identities=21% Similarity=0.280 Sum_probs=88.2
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC--CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG--TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. ..+++.+|.+|..... ...+ ..++++|+||+....... ..+...+++....++.++.++|
T Consensus 173 LL~~Lsg~--~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~------~~L~~~fl~~~era~~lL~vvD 244 (416)
T 1udx_A 173 LLAAMTRA--HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG------KGLGLEFLRHIARTRVLLYVLD 244 (416)
T ss_dssp HHHHHCSS--CCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS------CCSCHHHHHHHTSSSEEEEEEE
T ss_pred HHHHHHcC--CccccCcccceecceeeEEEecCcceEEEEeccccccchhhh------hhhhHHHHHHHHHHHhhhEEeC
Confidence 57888887 3467888888765443 3332 568999999984421000 0001112222345699999999
Q ss_pred cC-CCCCccHHHHHHHHHH-----hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHH
Q 031293 77 TK-WGVKPRDHELISLMER-----SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLR 150 (162)
Q Consensus 77 ~~-~~~~~~~~~~~~~l~~-----~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~ 150 (162)
.. .++.... ...+.+.. ...|.++++||+|+.... ..+.+.+.+...+ .+++++||++++|+++++
T Consensus 245 ls~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~~~g---~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 245 AADEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEEE----AVKALADALAREG---LAVLPVSALTGAGLPALK 316 (416)
T ss_dssp TTSCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHHTTT---SCEEECCTTTCTTHHHHH
T ss_pred CccCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhHH----HHHHHHHHHHhcC---CeEEEEECCCccCHHHHH
Confidence 86 2111111 11222221 268999999999997642 2234444444333 489999999999999999
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
++|.+.+.
T Consensus 317 ~~i~~~l~ 324 (416)
T 1udx_A 317 EALHALVR 324 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 182
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.29 E-value=5.3e-12 Score=97.23 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=56.3
Q ss_pred ceEEEcCCCCcccccCHHHH-HHHHHHHHHHHhcCcccceeEEEeecCC-CCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVK-DAWEELVKEYVSTRVSLKRVCLLIDTKW-GVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~vid~~~-~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
++.+|||||+.........+ ..+......++ ..+|++++|+|+.. +....+..++..+...+.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l---~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFA---ERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHH---HHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHH---HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 58999999996421100000 00122333333 34599999999987 455666667777766678999999999999
Q ss_pred CcHHHHHHHHHHH
Q 031293 110 FPIDVARRAMQIE 122 (162)
Q Consensus 110 ~~~~~~~~~~~~~ 122 (162)
+..+.....+.+.
T Consensus 232 ~~~el~~~~~~l~ 244 (550)
T 2qpt_A 232 ETQQLMRVYGALM 244 (550)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh
Confidence 7766655555443
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.27 E-value=1e-11 Score=90.52 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+.++.++||||++.. .. .. ...+|++++|+|+..+.... .+.. ...++|.++|+||+|+.
T Consensus 148 ~~~i~liDTpG~~~~----------~~---~~---~~~aD~vl~Vvd~~~~~~~~---~l~~-~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 148 GYDVVIVETVGVGQS----------ET---EV---ARMVDCFISLQIAGGGDDLQ---GIKK-GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TCSEEEEEEECCTTH----------HH---HH---HTTCSEEEEEECC------C---CCCH-HHHHHCSEEEECCCCTT
T ss_pred CCCEEEEeCCCccch----------HH---HH---HHhCCEEEEEEeCCccHHHH---HHHH-hhhcccCEEEEECCCCC
Confidence 457999999998432 11 11 14579999999986432111 0110 11256899999999998
Q ss_pred CcHHHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 110 FPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.........+.+++.+..... ...+++++||++|.|+++++++|.+.+.
T Consensus 208 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 208 NHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 654454444455554443221 1247899999999999999999988654
No 184
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1e-11 Score=91.29 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=63.7
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEE--e-CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeec
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFK--L-GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDT 77 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~--~-~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~ 77 (162)
|||+|++. .+.++++|++|++..... . +.++.++||||+-.... .. .....+++...+.+|++++|+|+
T Consensus 88 L~n~Lt~~--~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~--~~----~~~g~~~l~~i~~ad~il~vvD~ 159 (376)
T 4a9a_A 88 LLSKLTGT--ESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK--DG----RGRGKQVIAVARTCNLLFIILDV 159 (376)
T ss_dssp HHHHHHSB--CCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----------CHHHHHHHHHHHCSEEEEEEET
T ss_pred HHHHHhCC--CCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch--hh----hHHHHHHHHHHHhcCcccccccc
Confidence 68999998 477899999999877533 3 56799999999843311 11 12234455555677999999999
Q ss_pred CCCCCccHHH-HHHHHHHh-----CCceEEEEeccCC
Q 031293 78 KWGVKPRDHE-LISLMERS-----QTKYQVVLTKTDT 108 (162)
Q Consensus 78 ~~~~~~~~~~-~~~~l~~~-----~~~~ivv~nK~Dl 108 (162)
+++.. +.+ +...|... ..|.++++||+|.
T Consensus 160 ~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 160 NKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp TSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred CccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 86531 222 22333322 3567777777774
No 185
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.27 E-value=1e-12 Score=89.72 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=46.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc-CcccceeEEEeecC---CCCCccHHHHHHHHHH------hCCce
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST-RVSLKRVCLLIDTK---WGVKPRDHELISLMER------SQTKY 99 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~vid~~---~~~~~~~~~~~~~l~~------~~~~~ 99 (162)
..++.++||||+... ...+..++.. ...++++++|+|+. ..+.....++...+.. .++|+
T Consensus 54 ~~~~~l~Dt~G~~~~----------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKL----------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 123 (218)
T ss_dssp GSSCEEEECCCCGGG----------THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred CceEEEEECCCcHHH----------HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCE
Confidence 446999999999332 2333444332 23468999999988 2333333333333332 37899
Q ss_pred EEEEeccCCCCcHH
Q 031293 100 QVVLTKTDTVFPID 113 (162)
Q Consensus 100 ivv~nK~Dl~~~~~ 113 (162)
++|+||+|+.+...
T Consensus 124 ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 124 LIACNKSELFTARP 137 (218)
T ss_dssp EEEEECTTSTTCCC
T ss_pred EEEEEchHhcccCC
Confidence 99999999986543
No 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.25 E-value=6.9e-12 Score=84.19 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=62.4
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH----hCCceEEEEecc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER----SQTKYQVVLTKT 106 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~----~~~~~ivv~nK~ 106 (162)
++.++||+|..... ..+...+.+ .++++++|.|....-+-.. ..+...+.. .++|+++|.||+
T Consensus 57 ~l~~~Dt~~~~~~~---------~~~~~~~~~---~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGEN---------EWLHDHCMQ---VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC-------------CTTGGGHHH---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcchh---------hhHHHhhcc---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 36789999973210 001122222 3488888888764211111 123333332 268999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 107 DTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 107 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
|+........ +..+......+ .+++++||++|.|+++++.++.+.+
T Consensus 125 Dl~~~r~v~~--~~~~~~a~~~~---~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 125 DLVRXREVSV--SEGRAXAVVFD---XKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TCGGGCCSCH--HHHHHHHHHTT---CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhhccccccH--HHHHHHHHHhC---CceEEeccccCCCHHHHHHHHHHHH
Confidence 9864221111 11111222222 4789999999999999999998765
No 187
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.22 E-value=7.6e-11 Score=84.94 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=68.0
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH---H--hCCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME---R--SQTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~---~--~~~~~ivv~nK 105 (162)
-++.+|||||+..-..+. + ....|++ +++++++|+|+.........++.+++. . .++|++++.||
T Consensus 46 v~LqIWDTAGQErf~~~~-----l--~~~~yyr---~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK 115 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPS-----Y--DSERLFK---SVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115 (331)
T ss_dssp SCEEEEECCSCSSSCCCS-----H--HHHHHHT---TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred EEEEEEECCCchhccchh-----h--hhhhhcc---CCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEEC
Confidence 469999999993321000 0 1344544 459999999998763222222322232 2 36899999999
Q ss_pred cCCCCcHHHHHHHHHHHH----HHHhcC--CCCCCeEEeecCCCCCHHHHHHHHHHh
Q 031293 106 TDTVFPIDVARRAMQIEE----SLKANN--SLVQPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 106 ~Dl~~~~~~~~~~~~~~~----~~~~~~--~~~~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
+|+.++.........+.. .+...+ ....+++.+||++ .++.+.|..+.+.
T Consensus 116 ~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred cccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence 999865432211112222 122111 0235789999998 5899999988753
No 188
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.16 E-value=3.2e-11 Score=97.02 Aligned_cols=102 Identities=19% Similarity=0.128 Sum_probs=68.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.+||||||.+. ...+..++ +.+|++++|+|+.++...++...+..+...++|+++|+||+|+..
T Consensus 98 ~~i~liDTPG~~df----------~~~~~~~l---~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDF----------SSEVTAAL---RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSS----------CHHHHHHH---HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhh----------HHHHHHHH---HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 45899999999332 22233333 456999999999998888877777666667899999999999862
Q ss_pred ------cH----HHHHHHHHHHHHHHhc----------CCCCCCeEEeecCCCCC
Q 031293 111 ------PI----DVARRAMQIEESLKAN----------NSLVQPVMMVSSKSGAG 145 (162)
Q Consensus 111 ------~~----~~~~~~~~~~~~~~~~----------~~~~~~i~~~Sa~~~~g 145 (162)
.. .....++.++..+... .+...++.+.|+++|.|
T Consensus 165 ~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~ 219 (842)
T 1n0u_A 165 LELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA 219 (842)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred hhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccc
Confidence 11 2334444454444321 11123678889998865
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.15 E-value=2.8e-10 Score=81.62 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=62.4
Q ss_pred ceEEEcCCCCcccccC----HHHHHHHHHHHHHHHhcCc----------ccceeEEEeecCC-CCCccHHHHHHHHHHhC
Q 031293 32 KLCLVDLPGYGFAYAK----EEVKDAWEELVKEYVSTRV----------SLKRVCLLIDTKW-GVKPRDHELISLMERSQ 96 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~----~~~~~~~~~~~~~~~~~~~----------~~~~vi~vid~~~-~~~~~~~~~~~~l~~~~ 96 (162)
.++++||||+|..... ....+........++...+ .++++++++++.. ++...+.+++..+. ..
T Consensus 77 ~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~ 155 (301)
T 2qnr_A 77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NK 155 (301)
T ss_dssp EEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TT
T ss_pred CcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hc
Confidence 5899999999643110 0111111112223433332 1234666666543 46666655555443 25
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.|+++|+||.|+..+.+.....+.+++.+...+ .+++++||+++ |+++++..+.+.+
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~---~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHN---IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTT---CCCCCCC----------CHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC---CeEEecCCccc-cccHHHHHHHHHh
Confidence 789999999999876655444456666666554 48999999999 9999988877644
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.13 E-value=4e-10 Score=82.34 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=65.1
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||++.. ...+ ...+|++++|+|+..+... +.+.. .-...|.++|+||+|+.
T Consensus 166 ~~~~iliDT~Gi~~~----------~~~l------~~~~d~vl~V~d~~~~~~~---~~i~~-~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 166 GYDIILIETVGVGQS----------EFAV------ADMVDMFVLLLPPAGGDEL---QGIKR-GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TCSEEEEECCCC--C----------HHHH------HTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCEEEEECCCcchh----------hhhH------HhhCCEEEEEEcCCcchhH---HHhHH-HHHhcCCEEEEeeecCC
Confidence 446899999998432 1111 1246999999998764211 11111 11357889999999997
Q ss_pred CcHHHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 110 FPIDVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+..........+...+..... ...+++++||++|.|+++++++|.+.++
T Consensus 226 ~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 226 LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 543333333344333322111 1247899999999999999999988654
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=2.3e-10 Score=85.32 Aligned_cols=125 Identities=19% Similarity=0.308 Sum_probs=65.3
Q ss_pred ceEEEcCCCCcccccC----HHHHHHHHHHHHHHHhc----------CcccceeEEEeecC-CCCCccHHHHHHHHHHhC
Q 031293 32 KLCLVDLPGYGFAYAK----EEVKDAWEELVKEYVST----------RVSLKRVCLLIDTK-WGVKPRDHELISLMERSQ 96 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~vi~vid~~-~~~~~~~~~~~~~l~~~~ 96 (162)
.++++|+||++..... ....+.....+..++.. ...++++++++++. .++...+..++..+.. +
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~ 167 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K 167 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-T
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-c
Confidence 5899999999764211 11111112222333211 12245677777765 5777777777777764 7
Q ss_pred CceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhhh
Q 031293 97 TKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARFA 160 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~~ 160 (162)
+|+|+|+||+|+....++....+.+.+.+..++ .+++.+|+.++.++++++..+.+.++|.
T Consensus 168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~---i~~~~~sa~~~~~v~~~~~~l~~~iPfa 228 (418)
T 2qag_C 168 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK---IKIYEFPETDDEEENKLVKKIKDRLPLA 228 (418)
T ss_dssp SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT---CCCCCCC-----------------CCEE
T ss_pred CcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC---CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence 899999999999987777766677777777665 4889999999999999998888877764
No 192
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=1.2e-13 Score=101.61 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=75.3
Q ss_pred ChhcccCC-----CCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEe
Q 031293 1 MLNALTRQ-----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75 (162)
Q Consensus 1 lin~L~~~-----~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vi 75 (162)
|+|+|++. ...+.++..||+|++...+.++..+.++||||++....-.... ....+..++ ....++.+++++
T Consensus 176 liN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l--~~~~l~~~~-~~~~i~~~~~~l 252 (368)
T 3h2y_A 176 FINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYV--GKQSLKLIT-PTKEIKPMVFQL 252 (368)
T ss_dssp HHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGS--CHHHHHHHS-CSSCCCCEEEEE
T ss_pred HHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHh--hHHHHHHhc-cccccCceEEEE
Confidence 57888875 2345689999999999988887779999999996542111000 022233332 234568899999
Q ss_pred ecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293 76 DTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 76 d~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
++...........++.+...+.|+++++||+|.++....+...+.+++.++
T Consensus 253 ~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 253 NEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp CTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred cCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 884321111111223344457899999999999977777766666665543
No 193
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.11 E-value=5.8e-10 Score=79.95 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=61.2
Q ss_pred CcccceeEEEeecCCCC-CccH-HHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC
Q 031293 65 RVSLKRVCLLIDTKWGV-KPRD-HELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKS 142 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~-~~~~-~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 142 (162)
..++|.+++|+|++.+. +... ..++..+...++|+++|+||+|+.++..... .+.+.+.....+ .+++++||++
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~-~~~~~~~~~~~g---~~~~~~SA~~ 152 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKE-LERWISIYRDAG---YDVLKVSAKT 152 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHH-HHHHHHHHHHTT---CEEEECCTTT
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHH-HHHHHHHHHHCC---CeEEEEECCC
Confidence 56779999999998764 3322 2345556667899999999999986543211 223333333333 3899999999
Q ss_pred CCCHHHHHHHHHH
Q 031293 143 GAGIRSLRTVLSK 155 (162)
Q Consensus 143 ~~g~~~l~~~i~~ 155 (162)
|.|+++|++.+..
T Consensus 153 g~gi~~L~~~l~G 165 (302)
T 2yv5_A 153 GEGIDELVDYLEG 165 (302)
T ss_dssp CTTHHHHHHHTTT
T ss_pred CCCHHHHHhhccC
Confidence 9999999988764
No 194
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.10 E-value=9.6e-11 Score=78.87 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=66.0
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTD 107 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~D 107 (162)
.+.++||||+... ......+.. .++++++|.|.....+... ..++..+.. .+.|+++|+||+|
T Consensus 55 ~~~i~Dt~g~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D 121 (199)
T 2f9l_A 55 KAQIWDTAGQERY----------RRITSAYYR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121 (199)
T ss_dssp EEEEEECSSGGGT----------TCCCHHHHT---TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEECCCchhh----------hhhhHHHHh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 4678999997321 111223332 3488999999875322111 123333332 3578999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 108 TVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.+..... .+..+......+ ..++.+||+++.|+++++++|.+.+
T Consensus 122 l~~~~~~~--~~~a~~l~~~~~---~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 122 LRHLRAVP--TDEARAFAEKNN---LSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CGGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccCcC--HHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 86322110 012233333332 4788899999999999999998765
No 195
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=3.1e-10 Score=83.53 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhcCC
Q 031293 52 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID-VARRAMQIEESLKANNS 130 (162)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 130 (162)
+.+..++.++..+ ++++++|+|++++......++.+.+ .++|+++|+||+|+.+... .+...+++++.+...+.
T Consensus 59 e~f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 59 DDFLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp CHHHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 3456666666443 4899999999875433322333332 2789999999999986431 22233344444555544
Q ss_pred CCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 131 LVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 131 ~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
...+++++||++|.|++++++.+.+..
T Consensus 134 ~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp CCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 334789999999999999999997654
No 196
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.08 E-value=4.9e-11 Score=83.89 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=59.9
Q ss_pred HHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEe
Q 031293 59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMV 138 (162)
Q Consensus 59 ~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 138 (162)
++......++|+++.|+|++.+.......+. ++ ++|.++|+||+|+++....+.+. +.+...+ .++ ++
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~----~~~~~~g---~~v-~i 80 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWV----EFFKKQG---KRV-IT 80 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHH----HHHHHTT---CCE-EE
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHH----HHHHHcC---CeE-EE
Confidence 3344444667999999999987755432222 22 89999999999999754443333 3333333 367 99
Q ss_pred ecCCCCCHHHHHHHHHHh
Q 031293 139 SSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 139 Sa~~~~g~~~l~~~i~~~ 156 (162)
||.++.|+++|++.+.+.
T Consensus 81 Sa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 81 THKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp CCTTSCHHHHHHHHCCCT
T ss_pred ECCCCcCHHHHHHHHHHh
Confidence 999999999999887653
No 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=1.3e-09 Score=78.11 Aligned_cols=105 Identities=20% Similarity=0.259 Sum_probs=68.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCc-cH-HHHHHHHHHhCCceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKP-RD-HELISLMERSQTKYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~-~~-~~~~~~l~~~~~~~ivv~nK~Dl 108 (162)
.++.+||+ +... ..+.+.| .+++|++++|+|++.+... .. ..++..+...++|+++|+||+|+
T Consensus 63 ~~~~iwD~--qer~----------~~l~~~~---~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 63 GSGVIENV--LHRK----------NLLTKPH---VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp SSEEEEEE--CCCS----------CEETTTT---EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred CeEEEEEE--cccc----------ceeeccc---cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence 36899999 3111 2222233 3567999999999875422 21 23444555568999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHH
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~ 155 (162)
.+....++ ..+.+..+... .+++++||++|.|+++++..+..
T Consensus 128 ~~~~~v~~----~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 128 YDEDDLRK----VRELEEIYSGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHH----HHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCchhHHH----HHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 86544321 22222222212 58999999999999999988764
No 198
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.06 E-value=1.2e-10 Score=85.17 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC--------ccHHHHHHH---HHH----
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK--------PRDHELISL---MER---- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~--------~~~~~~~~~---l~~---- 94 (162)
+.++.+|||+|+.. +......| .++++++++|+|.++.-+ ..-.+...+ +..
T Consensus 192 ~~~l~iwDt~GQe~----------~r~~w~~y---f~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRS----------ERKKWIHC---FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGG----------GGGGGGGG---CTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchh----------hhHHHHHH---HhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 34589999999921 12223333 345699999999875211 112222222 222
Q ss_pred hCCceEEEEeccCCCCcH-----------------HHHHHHHHHHHHHHhc----CCCCCCeEEeecCCCCCHHHHHHHH
Q 031293 95 SQTKYQVVLTKTDTVFPI-----------------DVARRAMQIEESLKAN----NSLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~-----------------~~~~~~~~~~~~~~~~----~~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.+.|+++++||+|+..+. ..++..+.+...+... ......++++||+++.|+++++.++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 258999999999985221 1223333333222222 1233578899999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 339 ~~~i 342 (353)
T 1cip_A 339 TDVI 342 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8755
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=4.3e-10 Score=82.75 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH--hCCceEEEEeccCCCCcHH-HHHHHHHHHHHHHhc
Q 031293 52 DAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER--SQTKYQVVLTKTDTVFPID-VARRAMQIEESLKAN 128 (162)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~--~~~~~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~ 128 (162)
+.+..+++++.++ .+++++|+|++++. ..+...+.+ .++|+++|+||+|+.+... .+...++++......
T Consensus 57 e~f~~~l~~i~~~---~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 57 DDFLRILNGIGKS---DALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp HHHHHHHHHHHHS---CCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc---CcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 4556677776554 37999999998632 222222322 2789999999999975432 222223444444444
Q ss_pred CCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 129 NSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 129 ~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+....+++.+||++|.|++++++.|.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 44334789999999999999999997643
No 200
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.04 E-value=4.4e-13 Score=98.68 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=78.3
Q ss_pred ChhcccCC----CCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEee
Q 031293 1 MLNALTRQ----WGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID 76 (162)
Q Consensus 1 lin~L~~~----~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid 76 (162)
|+|+|++. .....++..||+|++...+.++..+.++||||+.......... ....+..++ ....++.++++++
T Consensus 178 liN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l--~~~~l~~~~-~~~~i~~~~~~l~ 254 (369)
T 3ec1_A 178 FINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFV--DARDLKIIT-PKREIHPRVYQLN 254 (369)
T ss_dssp HHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGS--CTTTHHHHS-CSSCCCCEEEEEC
T ss_pred HHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHH--hHHHHHHHh-cccccCceEEEEc
Confidence 57888875 1356789999999999988888789999999996542111000 012223332 2345699999999
Q ss_pred cCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293 77 TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
+...........++.+...+.|+++++||+|.++..+.+...+.+++.++
T Consensus 255 ~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g 304 (369)
T 3ec1_A 255 EGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLG 304 (369)
T ss_dssp TTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBT
T ss_pred CCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcC
Confidence 85321111111133344456899999999999876666665566665543
No 201
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.02 E-value=8.3e-10 Score=74.45 Aligned_cols=99 Identities=8% Similarity=0.008 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHH---HHHHHH----hCCceEEEEecc-CCCCcHHHHHHHHHHHHH
Q 031293 54 WEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHEL---ISLMER----SQTKYQVVLTKT-DTVFPIDVARRAMQIEES 124 (162)
Q Consensus 54 ~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~---~~~l~~----~~~~~ivv~nK~-Dl~~~~~~~~~~~~~~~~ 124 (162)
+..+++.|+.+ +|++|||+|+.+.-. ....++ ..++.+ .+.|++|+.||. |+.......+..+.+.
T Consensus 115 lRplWr~Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~-- 189 (227)
T 3l82_B 115 VIPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH-- 189 (227)
T ss_dssp --CCHHHHHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT--
T ss_pred HHHHHHHHhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC--
Confidence 34445555543 399999999965421 222223 223322 367999999995 6754333333222221
Q ss_pred HHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 125 LKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 125 ~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+... .+.+.|.+|||.+|+|+.+-++||.+.+.
T Consensus 190 L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 190 LNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp GGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 2222 25679999999999999999999987664
No 202
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.8e-09 Score=75.53 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=57.4
Q ss_pred ccceeEEEeecCCC--CCccH-HHHHHHHH----HhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee
Q 031293 67 SLKRVCLLIDTKWG--VKPRD-HELISLME----RSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 139 (162)
Q Consensus 67 ~~~~vi~vid~~~~--~~~~~-~~~~~~l~----~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 139 (162)
++|++++|+|+..+ .+-.. ..++..+. ..++|+++|+||+|+.+.... +..++...... ..+++++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~--~~~~~e~S 235 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKK--NLQVVETS 235 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSS--SCCEEECB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcC--CCeEEEEE
Confidence 57999999998764 22222 12333332 246899999999999755443 23333333221 25899999
Q ss_pred cCCCCCHHHHHHHHHHhh
Q 031293 140 SKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 140 a~~~~g~~~l~~~i~~~~ 157 (162)
|++|.|+++++.+|.+.+
T Consensus 236 Ak~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 236 ARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 203
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=1.4e-09 Score=81.09 Aligned_cols=154 Identities=17% Similarity=0.308 Sum_probs=86.2
Q ss_pred ChhcccCCCCce---eccCCCCcceEEEEEEeC-----CceEEEcCCCCcccccC----HH----HHHHHHHHHHHHHhc
Q 031293 1 MLNALTRQWGVV---RTSDKPGLTQTINFFKLG-----TKLCLVDLPGYGFAYAK----EE----VKDAWEELVKEYVST 64 (162)
Q Consensus 1 lin~L~~~~~~~---~~~~~~g~t~~~~~~~~~-----~~~~ivDtpG~~~~~~~----~~----~~~~~~~~~~~~~~~ 64 (162)
|+|.|+|.. .. .....|+.++....+... ..++++|+||+|..... .. ....+..++.++...
T Consensus 58 Lln~L~G~~-l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i 136 (427)
T 2qag_B 58 LMDTLFNTK-FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI 136 (427)
T ss_dssp HHHHHHTSC-C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHhCcc-ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 577887772 21 122245555543333221 25899999999764211 11 122333334443211
Q ss_pred C------cc--cc-eeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCe
Q 031293 65 R------VS--LK-RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV 135 (162)
Q Consensus 65 ~------~~--~~-~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (162)
. .. +| ++++|+|+..++...+.+++..+. .+.|+|+|+||+|.+.+.+.....+.+++.+...+. ++
T Consensus 137 ~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi---~I 212 (427)
T 2qag_B 137 RRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGV---QI 212 (427)
T ss_dssp CCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBC---CC
T ss_pred hhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCC---cE
Confidence 1 11 22 578889998889888888888886 678999999999999888888777778776666553 77
Q ss_pred EEeecCCCCCHHHHHHHHHHhhhhh
Q 031293 136 MMVSSKSGAGIRSLRTVLSKIARFA 160 (162)
Q Consensus 136 ~~~Sa~~~~g~~~l~~~i~~~~~~~ 160 (162)
+++|.-.. ...+.-..+...++|.
T Consensus 213 ~~is~~d~-~~~~~~~~~~~~~PFa 236 (427)
T 2qag_B 213 YQFPTDDE-SVAEINGTMNAHLPFA 236 (427)
T ss_dssp CCCC------CCSHHHHHTTC-CCB
T ss_pred EecCCCch-hHHHHHhhhcCCCCeE
Confidence 77775332 1222333444444443
No 204
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.01 E-value=3.5e-10 Score=82.95 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCC--------CccHHHH---HHHHHH----
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGV--------KPRDHEL---ISLMER---- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~--------~~~~~~~---~~~l~~---- 94 (162)
+.++.++||||+ +.+......-.++++++++|+|.++.- .....+. +..+..
T Consensus 200 ~~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 446899999999 333333333345679999999987621 1111222 222221
Q ss_pred hCCceEEEEeccCCCCc------------------HHHHHHHHHHHHHHHhc-C---CCCCCeEEeecCCCCCHHHHHHH
Q 031293 95 SQTKYQVVLTKTDTVFP------------------IDVARRAMQIEESLKAN-N---SLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~-~---~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
.+.|+++++||+|+..+ ...++..+.+...+... . .....++++||+++.|+++++.+
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 25899999999998521 11223333333222221 1 23357889999999999999999
Q ss_pred HHHhh
Q 031293 153 LSKIA 157 (162)
Q Consensus 153 i~~~~ 157 (162)
+.+.+
T Consensus 347 v~~~i 351 (362)
T 1zcb_A 347 VKDTI 351 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98755
No 205
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.99 E-value=1.8e-10 Score=84.53 Aligned_cols=115 Identities=22% Similarity=0.215 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCC-CC-CccHHHHHHHHHHhCCceEEEEe
Q 031293 30 GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-GV-KPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-~~-~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
...+.+|||||++.... .......+......|+.. +|++++++|+.. .. ......++..+...+.|+++|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEe
Confidence 34699999999876522 223344455566667654 488888887643 22 22234455555556789999999
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHH
Q 031293 105 KTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTV 152 (162)
Q Consensus 105 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~ 152 (162)
|+|++++.... .+.++.. ......+++++|+..+.++++.++.
T Consensus 212 K~Dl~~~~~~~--~~~~~~~---~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 212 KIDLMDKGTDA--VEILEGR---SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CGGGCCTTCCS--HHHHTTS---SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred CCccCCCcccH--HHHHcCc---cccccCCeEEEEECChHHhccCCCH
Confidence 99998643211 1111111 1112257889999988877765443
No 206
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.3e-09 Score=72.73 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=58.1
Q ss_pred ChhcccCCCCc-eeccCCCCcceEEEEEEeCCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC-
Q 031293 1 MLNALTRQWGV-VRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK- 78 (162)
Q Consensus 1 lin~L~~~~~~-~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~- 78 (162)
|+|+|++.... ...+..|+++.+. .+..+.++||||+..... .+..++... ...+|++++|+|+.
T Consensus 64 ll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~------~~~~~~~~~---~~~~~~~i~v~d~~~ 130 (193)
T 2ged_A 64 LLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRY------KLSDYLKTR---AKFVKGLIFMVDSTV 130 (193)
T ss_dssp HHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSSC------CHHHHHHHH---GGGEEEEEEEEETTC
T ss_pred HHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHHH------HHHHHHHhh---cccCCEEEEEEECCC
Confidence 45666665211 1123344444322 245689999999844311 112223222 23469999999987
Q ss_pred CCC--CccHHHHHHHHHH------hCCceEEEEeccCCCCcHHHHHHHHHHHHHHH
Q 031293 79 WGV--KPRDHELISLMER------SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 79 ~~~--~~~~~~~~~~l~~------~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
..- .....++...+.. .++|+++|+||+|+.+........+.+.+.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 131 DPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence 211 1111122222221 27899999999999876656565556655444
No 207
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.92 E-value=7.3e-10 Score=74.15 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=63.8
Q ss_pred eEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccH-HHHHHHHHH---hCCceEEEEeccCC
Q 031293 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRD-HELISLMER---SQTKYQVVLTKTDT 108 (162)
Q Consensus 33 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~-~~~~~~l~~---~~~~~ivv~nK~Dl 108 (162)
+.++|+||+... ..+...+.. .++.+++|.|.....+-.. ..++..+.. .+.|+++++||+|+
T Consensus 80 ~~i~Dt~g~~~~----------~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl 146 (191)
T 1oix_A 80 AQIWDTAGLERY----------RAITSAYYR---GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146 (191)
T ss_dssp EEEEEECSCCSS----------SCCCHHHHT---TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEECCCCcch----------hhhhHHHhh---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 557999997332 112233332 3478889999765321111 123333332 25789999999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhh
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.+..... .+..+......+ ..++.+||+++.|++++++.|.+.+
T Consensus 147 ~~~~~~~--~~~a~~l~~~~~---~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 147 RHLRAVP--TDEARAFAEKNG---LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp GGGCCSC--HHHHHHHHHHTT---CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccC--HHHHHHHHHHcC---CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6322110 112233333332 4788899999999999999998754
No 208
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.90 E-value=1.3e-09 Score=74.45 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=54.0
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCcH--HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI--DVARRAMQIEESLKANNSLVQPVMMVSSKSGAG 145 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g 145 (162)
.+.+++|+|+..+... ........+.|.++|+||+|+.+.. ..... .+.+...+ ...+++++||++|.|
T Consensus 130 ~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~----~~~~~~~~-~~~~i~~~Sa~~g~g 200 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKM----KADAKLIN-PRAKIIEMDLKTGKG 200 (221)
T ss_dssp CSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHH----HHHHHHHC-TTSEEEECBTTTTBT
T ss_pred cCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHH----HHHHHHhC-CCCeEEEeecCCCCC
Confidence 3678999998765321 1122233468999999999986321 12222 22232222 125899999999999
Q ss_pred HHHHHHHHHHhhh
Q 031293 146 IRSLRTVLSKIAR 158 (162)
Q Consensus 146 ~~~l~~~i~~~~~ 158 (162)
+++++++|.+.+.
T Consensus 201 i~~l~~~l~~~~~ 213 (221)
T 2wsm_A 201 FEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.87 E-value=8.5e-09 Score=74.49 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC-------CCCCc-cHHHHHHHHH---H----
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKP-RDHELISLME---R---- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~-------~~~~~-~~~~~~~~l~---~---- 94 (162)
+-++.+|||+|+ +.+......-.++++++++|+|.+ +.-.. .-.+...++. .
T Consensus 166 ~v~l~iwDtgGQ-------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQ-------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCS-------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCc-------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 346899999999 333333333345569999999754 21111 1122222222 1
Q ss_pred hCCceEEEEeccCCCCcH------------------HHHHHHHHHHHHHHhcC---CCCCCeEEeecCCCCCHHHHHHHH
Q 031293 95 SQTKYQVVLTKTDTVFPI------------------DVARRAMQIEESLKANN---SLVQPVMMVSSKSGAGIRSLRTVL 153 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~------------------~~~~~~~~~~~~~~~~~---~~~~~i~~~Sa~~~~g~~~l~~~i 153 (162)
.++|+++++||+|+..+. ..++..+.+.+.+.... .+...++++||+++.|++.++..+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 258999999999986422 23344444444433221 123467789999999999999999
Q ss_pred HHhh
Q 031293 154 SKIA 157 (162)
Q Consensus 154 ~~~~ 157 (162)
.+.+
T Consensus 313 ~~~I 316 (327)
T 3ohm_A 313 KDTI 316 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8755
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.86 E-value=2.5e-09 Score=78.19 Aligned_cols=113 Identities=10% Similarity=0.043 Sum_probs=65.9
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC-------CCCCccH-HHHHH---HHHH----hC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK-------WGVKPRD-HELIS---LMER----SQ 96 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~-------~~~~~~~-~~~~~---~l~~----~~ 96 (162)
++.+|||+|+.. +......| .++++++++|+|.+ +...... .+... .+.. .+
T Consensus 184 ~l~iwDtaGQe~----------~r~~~~~y---~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 184 VYRLFDVGGQRN----------ERRKWIHL---FEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp EEEEEEECCSTT----------GGGGTGGG---CTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred eeEEEECCCchh----------hhHHHHHH---hCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 589999999921 12233333 34569999999975 1111111 22222 2221 25
Q ss_pred CceEEEEeccCCCCcH-----------------------HHHHHHHHHHHHHHh----cC-----CCCCCeEEeecCCCC
Q 031293 97 TKYQVVLTKTDTVFPI-----------------------DVARRAMQIEESLKA----NN-----SLVQPVMMVSSKSGA 144 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~----~~-----~~~~~i~~~Sa~~~~ 144 (162)
+|+++|+||+|+..+. ..++..+.+.+.+.. +. .+...++++||+++.
T Consensus 251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~ 330 (354)
T 2xtz_A 251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK 330 (354)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence 8999999999984221 122222222322211 10 122346899999999
Q ss_pred CHHHHHHHHHHhh
Q 031293 145 GIRSLRTVLSKIA 157 (162)
Q Consensus 145 g~~~l~~~i~~~~ 157 (162)
|+++++.++.+.+
T Consensus 331 nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 LVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998754
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.86 E-value=5.1e-08 Score=70.88 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHH-HHHHHHHhCCceEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE-LISLMERSQTKYQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~-~~~~l~~~~~~~ivv~nK~Dl 108 (162)
+.++.++||||++.. ...+ ...+|.+++++|+..+- +.+ +...+ ...+.++++||+|+
T Consensus 147 ~~~~iliDT~Gi~~~----------~~~v------~~~~d~vl~v~d~~~~~---~~~~i~~~i--~~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 147 GFDVILVETVGVGQS----------ETAV------ADLTDFFLVLMLPGAGD---ELQGIKKGI--FELADMIAVNKADD 205 (337)
T ss_dssp TCCEEEEEECSSSSC----------HHHH------HTTSSEEEEEECSCC---------CCTTH--HHHCSEEEEECCST
T ss_pred CCCEEEEECCCCCcc----------hhhH------HhhCCEEEEEEcCCCcc---cHHHHHHHH--hccccEEEEEchhc
Confidence 557999999999653 1111 13569999999975331 111 00001 12467888899997
Q ss_pred CCcH-HHHHHHHHHHHHHHhcCC----CCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 109 VFPI-DVARRAMQIEESLKANNS----LVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~----~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.... ......+.+...+..... ...+++++||+++.|+++|++.|.+..+
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6433 233333344333322211 1258999999999999999999988654
No 212
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=1.5e-09 Score=79.43 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=40.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 60 (162)
|+|+|++. . +.++++|++|.+.+. ...+ ..+.++||||+.... + ..+.+...
T Consensus 18 L~n~Lt~~-~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a---~---~~~gl~~~ 89 (363)
T 1jal_A 18 LFNALTKA-G-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA---S---KGEGLGNK 89 (363)
T ss_dssp HHHHHHHT-C-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH---H---HHGGGTCC
T ss_pred HHHHHHCC-C-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc---c---ccchHHHH
Confidence 58999988 3 678899998876543 2222 359999999984321 0 00111122
Q ss_pred HHhcCcccceeEEEeecCC
Q 031293 61 YVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~~ 79 (162)
++...+.+|++++|+|+.+
T Consensus 90 fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 90 FLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHTCSEEEEEEECSC
T ss_pred HHHHHHhcCeEEEEEecCC
Confidence 3333456799999999875
No 213
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.81 E-value=9.3e-09 Score=74.61 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=70.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC-------CCC-ccHHHHHHH---H-HH---
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GVK-PRDHELISL---M-ER--- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-------~~~-~~~~~~~~~---l-~~--- 94 (162)
+-++.+|||+|+ +.+......| .++++++++|+|.++ ... ..-.+...+ + ..
T Consensus 160 ~v~l~iwDtaGQ----------e~~R~~w~~y---y~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQ----------RSERKXWVSF---FSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSC----------HHHHHHHHTT---SCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCc----------ccccccHHHH---hccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 456999999999 2233333444 456799999999862 111 111222222 2 21
Q ss_pred hCCceEEEEeccCCCCcHH-----------------HHHHHHHHHHHH------HhcC--------------CCCCCeEE
Q 031293 95 SQTKYQVVLTKTDTVFPID-----------------VARRAMQIEESL------KANN--------------SLVQPVMM 137 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~------~~~~--------------~~~~~i~~ 137 (162)
.++|+++++||+|+..+.. .++..+.+.+.+ .... .+...+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 2589999999999863221 334444555544 1110 02246788
Q ss_pred eecCCCCCHHHHHHHHHHhh
Q 031293 138 VSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 138 ~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+||++..+++.++..+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.81 E-value=7.4e-09 Score=76.72 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC-------CC-CccHHHHH---HHHHH----
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW-------GV-KPRDHELI---SLMER---- 94 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~-------~~-~~~~~~~~---~~l~~---- 94 (162)
+.++.+|||+|+.. +......|+ ++++++++|+|.++ .. ...-.+.. ..+..
T Consensus 216 ~v~l~iwDtaGQe~----------~r~~w~~yf---~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRD----------ERRKWIQCF---NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGG----------GGGGGGGGT---TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhh----------hhhhhHhhc---cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 34689999999921 123333443 45699999999875 11 11112222 22222
Q ss_pred hCCceEEEEeccCCCCcHH--------------------------------HHHHHHHHHHH-HHhc-----CCCCCCeE
Q 031293 95 SQTKYQVVLTKTDTVFPID--------------------------------VARRAMQIEES-LKAN-----NSLVQPVM 136 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~--------------------------------~~~~~~~~~~~-~~~~-----~~~~~~i~ 136 (162)
.++|+++|+||+|+..+.. .+.....+... ...+ +.....++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 2578999999999853221 11222222221 1211 11224567
Q ss_pred EeecCCCCCHHHHHHHHHHhh
Q 031293 137 MVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 137 ~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
++||+++.|+++++.++.+.+
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHH
Confidence 899999999999999987754
No 215
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.80 E-value=1.5e-08 Score=71.57 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=60.6
Q ss_pred HHHHHHHhcCcccceeEEEeecCCCCC-ccHHHH---HHHHHH----hCCceEEEEec-cCCCCcHHHHHHHHHHHHHHH
Q 031293 56 ELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHEL---ISLMER----SQTKYQVVLTK-TDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~---~~~l~~----~~~~~ivv~nK-~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
.+.+.|..+ +|++|||+||.+... ....++ ..++.+ .+.|++|+.|| .|+.......+..+.+. +.
T Consensus 202 plWr~Yy~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~--L~ 276 (312)
T 3l2o_B 202 PQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--LN 276 (312)
T ss_dssp HHHHHHHHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT--GG
T ss_pred HHHHHHhcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC--Cc
Confidence 344455433 399999999965321 112222 233321 47899999997 57764333333222221 22
Q ss_pred hcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 127 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 127 ~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
.. .+.+.|.++||.+|+|+.+-++||.+.+.
T Consensus 277 ~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 277 LL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 22 25679999999999999999999998764
No 216
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.74 E-value=4.3e-09 Score=77.29 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=42.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EE----------------------eCCceEEEcCCCCcccccCHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FK----------------------LGTKLCLVDLPGYGFAYAKEEVKDAWEE 56 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~----------------------~~~~~~ivDtpG~~~~~~~~~~~~~~~~ 56 (162)
|+|+|++. .+.+++.|++|...+. .. .+..+.++||||+....... +.
T Consensus 17 L~n~L~~~--~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~------~~ 88 (368)
T 2dby_A 17 LFNALTRA--NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKG------EG 88 (368)
T ss_dssp HHHHHHHH--HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCSS------SC
T ss_pred HHHHHhCC--CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccccccc------ch
Confidence 57888877 3567788888764332 11 23459999999985431100 00
Q ss_pred HHHHHHhcCcccceeEEEeecCC
Q 031293 57 LVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 57 ~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
+...++...+.+|++++|+|+..
T Consensus 89 lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 89 LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TTHHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHHHhCCEEEEEEECCC
Confidence 11222223345699999999875
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.73 E-value=1.4e-08 Score=72.75 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=58.3
Q ss_pred cCcccceeEEEeecCCCCCccHHHHHHHH---HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeec
Q 031293 64 TRVSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSS 140 (162)
Q Consensus 64 ~~~~~~~vi~vid~~~~~~~~~~~~~~~l---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 140 (162)
...++|.+++|+|++.+....+ .+-+++ ...++|.++|+||+|+.++.......+.+.+.....+ .+++++||
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g---~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---YDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---CCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC---CeEEEEec
Confidence 3567899999999997665544 333333 3468999999999999976542111223333333333 38999999
Q ss_pred CCCCCHHHHHHHH
Q 031293 141 KSGAGIRSLRTVL 153 (162)
Q Consensus 141 ~~~~g~~~l~~~i 153 (162)
.++.|+++|++..
T Consensus 159 ~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 159 KDQDSLADIIPHF 171 (307)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CCCCCHHHHHhhc
Confidence 9999988776544
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.58 E-value=7.7e-07 Score=65.02 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred CcccceeEEEeecCCCCCccHHHHHHHH---HHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 65 RVSLKRVCLLIDTKWGVKPRDHELISLM---ERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~~~~~~~~~~~l---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
..++|.+++| ++..+..... .+-.+| ...++|.++|+||+|+.++... ...+.+...+...+ .+++++||.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G---~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG---YRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT---CCEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC---CcEEEEecC
Confidence 3567988866 6665433322 232333 4468999999999999976532 11233333444333 389999999
Q ss_pred CCCCHHHHHHHHH
Q 031293 142 SGAGIRSLRTVLS 154 (162)
Q Consensus 142 ~~~g~~~l~~~i~ 154 (162)
++.|+++|...+.
T Consensus 202 ~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 202 TQDGLKPLEEALT 214 (358)
T ss_dssp TTBTHHHHHHHHT
T ss_pred CCcCHHHHHHhcC
Confidence 9999999887653
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.41 E-value=2.7e-06 Score=63.38 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=72.6
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCCc
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFP 111 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~~ 111 (162)
.++++|+||++..... ...+++.. +....+..+. +++.. ...++..+...+...+.|+++|+||.|++-.
T Consensus 121 ~ltv~D~~g~~~~~~~------~~~~L~~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFP------PDTYLEKM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCC------HHHHHHHT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHH------HHHHHHHc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 5899999998653211 12223222 1222244444 66653 4567777788888788999999999997511
Q ss_pred H---------HHHHHHHHHHHHH----HhcCCCCCCeEEeec--CCCCCHHHHHHHHHHhhhh
Q 031293 112 I---------DVARRAMQIEESL----KANNSLVQPVMMVSS--KSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 112 ~---------~~~~~~~~~~~~~----~~~~~~~~~i~~~Sa--~~~~g~~~l~~~i~~~~~~ 159 (162)
+ ...+..+.+++.. ...+.....++++|+ ..+.|++++.+.+.+.++.
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 1223333444332 222222347899999 6777899999999877653
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.41 E-value=5.9e-07 Score=61.27 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=41.7
Q ss_pred hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhhh
Q 031293 95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~~ 159 (162)
.+.|.++|+||+|+.+.... ..+.+.+.+...+ ...+++++||++|.|++++++++.+.+..
T Consensus 163 ~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 163 MKTADLIVINKIDLADAVGA--DIKKMENDAKRIN-PDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTTCSEEEEECGGGHHHHTC--CHHHHHHHHHHHC-TTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeccccCchhHH--HHHHHHHHHHHhC-CCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 36789999999998632110 1122233333221 12489999999999999999999887653
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.25 E-value=1.5e-06 Score=66.30 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
+..+.++||||.... .... +.. +..... ...+|.+++|+|+..+.. .......+.+. +|+ .+|+||+|.
T Consensus 183 ~~DvvIIDTpG~~~~--~~~l---~~e-l~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~ 252 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQ--EDSL---FEE-MLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDG 252 (504)
T ss_dssp TCCEEEEEECCCCTT--CHHH---HHH-HHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred CCcEEEEeCCCCccc--chhH---HHH-HHHHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcc
Confidence 446999999998432 1111 111 111111 125689999999987643 34444545443 675 899999998
Q ss_pred CCcHHHHHHHHHHHHHHHh------cCC------CCCCeEEeecCCCCC-HHHHHHHHHHh
Q 031293 109 VFPIDVARRAMQIEESLKA------NNS------LVQPVMMVSSKSGAG-IRSLRTVLSKI 156 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~------~~~------~~~~i~~~Sa~~~~g-~~~l~~~i~~~ 156 (162)
...... .+. +...++. .+. ...+..++|+..|.| +++|++++.+.
T Consensus 253 ~~~~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 744321 111 1122210 000 112455689999999 99999998765
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.21 E-value=1.4e-05 Score=56.31 Aligned_cols=99 Identities=21% Similarity=0.382 Sum_probs=66.4
Q ss_pred CceEEEcCCCCcccccCH----HHH----HHHHHHHHHHHhcC-------cccceeEEEeec-CCCCCccHHHHHHHHHH
Q 031293 31 TKLCLVDLPGYGFAYAKE----EVK----DAWEELVKEYVSTR-------VSLKRVCLLIDT-KWGVKPRDHELISLMER 94 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~----~~~----~~~~~~~~~~~~~~-------~~~~~vi~vid~-~~~~~~~~~~~~~~l~~ 94 (162)
..++++|+||+|...... ... ..+.......+.+. ..++++++++|. .+++...+.+++..+..
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~ 139 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK 139 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh
Confidence 368999999998752211 111 11222222222211 224677888884 57888889888888887
Q ss_pred hCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCC
Q 031293 95 SQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 130 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
. .++++|+||+|.+...+.....+.+++.+..++.
T Consensus 140 ~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 140 V-VNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp T-SEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTC
T ss_pred c-CcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCc
Confidence 6 8999999999999888888888888887877765
No 223
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.13 E-value=1.1e-06 Score=64.90 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=30.6
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEe--------------------CCceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKL--------------------GTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~--------------------~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 60 (162)
|+|+|++. . ..++++|++|.+.+.... ...+.++||||+...... . +.+...
T Consensus 38 L~n~Ltg~-~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~---~---~glg~~ 109 (396)
T 2ohf_A 38 FFNVLTNS-Q-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN---G---QGLGNA 109 (396)
T ss_dssp HHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------------CCH
T ss_pred HHHHHHCC-C-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch---h---hHHHHH
Confidence 58999988 3 478899999976543221 224899999998432110 0 111122
Q ss_pred HHhcCcccceeEEEeecCC
Q 031293 61 YVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~~ 79 (162)
++...+.+|++++|+|+.+
T Consensus 110 ~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 110 FLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHTSSSEEEEEEC--
T ss_pred HHHHHHhcCeEEEEEecCC
Confidence 3333456799999999864
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.84 E-value=9.2e-05 Score=55.58 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=53.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.++||||.... .... ...+... .....+|.+++|+|+..+ .........+.+.-.+..+|+||+|...
T Consensus 183 ~DvVIIDTaGrl~~--d~~l----m~el~~i-~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKE--DKAL----IEEMKQI-SNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp CSEEEEECCCCSSC--CHHH----HHHHHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCEEEEECCCcccc--hHHH----HHHHHHH-HHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 56999999996322 1111 1112221 112235899999999864 2334444555443344678999999875
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHH
Q 031293 111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIR 147 (162)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 147 (162)
+... ..+.....+ .|+.+++. |++++
T Consensus 254 ~gG~------~ls~~~~~g---~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 KGGG------ALSAVAATG---APIKFIGT--GEKID 279 (443)
T ss_dssp SHHH------HHHHHHTTC---CCEEEEEC--SSSTT
T ss_pred cccH------HHHHHHHHC---CCEEEEEc--CCChH
Confidence 5432 111222232 48888875 55544
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.73 E-value=8e-06 Score=57.89 Aligned_cols=44 Identities=32% Similarity=0.695 Sum_probs=26.5
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCcccc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAY 45 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~~ 45 (162)
|+|+|++. ..+.+++.||+|++...+..+..+.++||||+....
T Consensus 136 liN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 136 LINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPK 179 (282)
T ss_dssp HHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSC
T ss_pred HHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCC
Confidence 58999998 568899999999988877778889999999996553
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.51 E-value=0.00014 Score=54.63 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=42.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC-c-eEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT-K-YQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~-~-~ivv~nK~D 107 (162)
+..+.++||||.... . ...+. .+.. +.....+|.+++|+|+..+. ........++. .. | ..+|+||+|
T Consensus 180 ~~D~vIIDT~G~~~~---~--~~l~~-~l~~-i~~~~~~d~vllVvda~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 180 KADVLIIDTAGRHKE---E--KGLLE-EMKQ-IKEITNPDEIILVIDGTIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLD 249 (432)
T ss_dssp SCSEEEEECCCSCSS---H--HHHHH-HHHH-TTSSSCCSEEEEEEEGGGGG--GHHHHHHHHHT-TSCSCEEEEEECSS
T ss_pred CCCEEEEcCCCCccc---c--HHHHH-HHHH-HHHHhcCcceeEEeeccccH--HHHHHHHHHhh-cccCCeEEEEeCCC
Confidence 456999999997321 0 11111 1222 23334579999999997653 22233333332 35 6 789999999
Q ss_pred CCCc
Q 031293 108 TVFP 111 (162)
Q Consensus 108 l~~~ 111 (162)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8643
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.45 E-value=0.00029 Score=52.77 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
+..+.++||||.......... ...+....+.. ..+.+++|+|+..+ .........+.+.-.+..+|+||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~l----m~el~~i~~~~-~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKL----LEEMKEMYDVL-KPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHH----HHHHHHHHHHH-CCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHH----HHHHHHHHHhh-CCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEeccccc
Confidence 346899999996320011111 11122222221 34899999999864 333445555554445678899999987
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCH
Q 031293 110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 146 (162)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 146 (162)
..... .+... ...+ .|+.+++. |+++
T Consensus 252 a~~G~--als~~----~~~g---~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 AKGGG--ALSAV----VATG---ATIKFIGT--GEKI 277 (433)
T ss_dssp SCHHH--HHHHH----HHHT---CEEEEEEC--CSSS
T ss_pred ccchH--HHHHH----HHHC---CCEEEEEC--CCCh
Confidence 54432 11111 1122 48888875 5554
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.38 E-value=0.00057 Score=48.73 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
+..+.++||||..... .. +.....+... .....+|.+++|+|+..+ .......+.+.. ..| ..+|+||+|.
T Consensus 180 ~~D~ViIDTpg~~~~~-~~---~~l~~el~~i-~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYG-EE---AALLEEMKNI-YEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDG 251 (297)
T ss_dssp TCSEEEEECCCSCCTT-CH---HHHHHHHHHH-HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGG
T ss_pred CCCEEEEeCCCCcccc-cH---HHHHHHHHHH-HHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence 3469999999973300 00 0001111111 112246899999998753 333344444443 467 6789999998
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
..... . ..+.....+ .|+.+++ .|+++++
T Consensus 252 ~~~~g--~----~~~~~~~~~---~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 252 TAKGG--G----ALSAVAATG---ATIKFIG--TGEKIDE 280 (297)
T ss_dssp CTTHH--H----HHHHHHTTT---CCEEEEE--CSSSTTC
T ss_pred CcchH--H----HHHHHHHHC---cCEEEEe--CCCChhh
Confidence 64332 1 112233333 4888876 5666554
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.23 E-value=5.4e-05 Score=53.05 Aligned_cols=43 Identities=26% Similarity=0.555 Sum_probs=27.3
Q ss_pred ChhcccCCCCceeccCCCCcceEEEEEEeCCceEEEcCCCCccc
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFA 44 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~~~~~~~~~ivDtpG~~~~ 44 (162)
|+|+|++. ..+.+++.||+|+....+..+.++.++||||+...
T Consensus 115 lin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 115 IINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp HHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred HHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 58999998 45678999999998877777778999999998654
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.22 E-value=0.0014 Score=51.32 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCceEEEcCCCCccccc---CHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCC-ccHHHHHHHHHHhCCceEEEEec
Q 031293 30 GTKLCLVDLPGYGFAYA---KEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVK-PRDHELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~-~~~~~~~~~l~~~~~~~ivv~nK 105 (162)
..++.++|.||++.... .......+..++..|+.... .++++++++..... .....++..+...+.+.++|+||
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~--~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE--TISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS--CCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC--CCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 45699999999876421 23334455667777765433 45666666654433 23344556665567899999999
Q ss_pred cCCCCcH
Q 031293 106 TDTVFPI 112 (162)
Q Consensus 106 ~Dl~~~~ 112 (162)
.|+++..
T Consensus 224 ~Dlv~~g 230 (608)
T 3szr_A 224 PDLVDKG 230 (608)
T ss_dssp GGGSSSS
T ss_pred hhhcCcc
Confidence 9998543
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.72 E-value=0.0017 Score=50.61 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=43.5
Q ss_pred ChhcccCCCCceeccC-CCCcceEEEEEE------eCCceEEEcCCCCccccc-CHHHHHHHHHHHHHHHhcCcccceeE
Q 031293 1 MLNALTRQWGVVRTSD-KPGLTQTINFFK------LGTKLCLVDLPGYGFAYA-KEEVKDAWEELVKEYVSTRVSLKRVC 72 (162)
Q Consensus 1 lin~L~~~~~~~~~~~-~~g~t~~~~~~~------~~~~~~ivDtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vi 72 (162)
|+|+|+|......++. ..++|+.+..+. .+..+.++||||++.... .... ....+.-..+. ..+
T Consensus 54 LiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~--~~~~fala~ll------ss~ 125 (592)
T 1f5n_A 54 LMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQN--DSWIFALAVLL------SST 125 (592)
T ss_dssp HHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTT--HHHHHHHHHHH------CSE
T ss_pred HHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhH--HHHHHHHHHHh------cCe
Confidence 6899999842112222 224445444331 245699999999976432 1111 11111111111 126
Q ss_pred EEeecCCCCCccHHHHHHH
Q 031293 73 LLIDTKWGVKPRDHELISL 91 (162)
Q Consensus 73 ~vid~~~~~~~~~~~~~~~ 91 (162)
+|+|+..+++..+..++..
T Consensus 126 lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 126 FVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp EEEEEESCSSHHHHHTTHH
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 7778877777777666544
No 232
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.69 E-value=0.00031 Score=51.97 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=44.8
Q ss_pred ChhcccCCCCceeccCCCCcceEEEE--EEeC------------------CceEEEcCCCCcccccCHHHHHHHHHHHHH
Q 031293 1 MLNALTRQWGVVRTSDKPGLTQTINF--FKLG------------------TKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60 (162)
Q Consensus 1 lin~L~~~~~~~~~~~~~g~t~~~~~--~~~~------------------~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~ 60 (162)
|||+|++. ..+.++++|++|.+.+. ..+. ..+.++|+||+....... +.+...
T Consensus 36 L~n~Ltg~-~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~------e~L~~~ 108 (392)
T 1ni3_A 36 FFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTG------VGLGNA 108 (392)
T ss_dssp HHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSS------SSSCHH
T ss_pred HHHHHHCC-CcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHH------HHHHHH
Confidence 58999998 45589999999886543 2222 247999999974331110 001112
Q ss_pred HHhcCcccceeEEEeecCC
Q 031293 61 YVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~~ 79 (162)
++...+.+|.+++|+|+.+
T Consensus 109 fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 109 FLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 2223345699999999864
No 233
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.43 E-value=0.02 Score=39.68 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=27.2
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccCC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDT 108 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~Dl 108 (162)
+|.+++++.+...-.......++.++..+.+++ +|+|+.|.
T Consensus 153 aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 153 PTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 588888887764322222344566666677876 99999874
No 234
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.42 E-value=0.032 Score=36.89 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=40.5
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-----CCceEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-----QTKYQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-----~~~~ivv~nK 105 (162)
..+.++|+|+.- .......+. .+|.+++++.+...- ......++.+... +.++.+|+|+
T Consensus 76 yD~viiD~~~~~------------~~~~~~~l~---~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 76 YDFAIVDGAGSL------------SVITSAAVM---VSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp SSEEEEECCSSS------------SHHHHHHHH---HCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCEEEEECCCCC------------CHHHHHHHH---HCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 468999999752 111222222 248999998887544 4444556666543 3577999999
Q ss_pred cCCC
Q 031293 106 TDTV 109 (162)
Q Consensus 106 ~Dl~ 109 (162)
.|.-
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9853
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.17 E-value=0.067 Score=40.12 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
+..+.++||||..... .. . ...+... .....++.+++|+|+..+. ........+.. ..+ .-+|+||+|.
T Consensus 183 ~~D~VIIDTpG~l~~~--~~---l-~~~L~~~-~~~~~p~~vllVvda~~g~--~~~~~~~~f~~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD--EA---M-MDEIKQV-HASINPVETLFVVDAMTGQ--DAANTAKAFNE-ALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTTC--HH---H-HHHHHHH-HHHSCCSEEEEEEETTBCT--THHHHHHHHHH-HSCCCCEEEECTTS
T ss_pred CCCEEEEECCCccccc--HH---H-HHHHHHH-HHhhcCcceeEEeecchhH--HHHHHHHHHhc-cCCCeEEEEecCCC
Confidence 4469999999862210 00 0 1111111 1122458899999997652 23333333332 345 3578999997
Q ss_pred CC
Q 031293 109 VF 110 (162)
Q Consensus 109 ~~ 110 (162)
..
T Consensus 253 ~~ 254 (433)
T 2xxa_A 253 DA 254 (433)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 236
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.74 E-value=0.13 Score=35.95 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=38.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceE-EEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQ-VVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~i-vv~nK~Dl~ 109 (162)
.+.++|||+.... .+ ...+.. .+|.+++|+.+...-........+.+...+.+++ +|+|+.|.-
T Consensus 193 D~VIIDtpp~~~~--~d------~~~l~~------~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 193 NFVIIDTPPVNTV--TD------AQLFSK------FTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp SEEEEECCCTTTC--SH------HHHHHH------HHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CEEEEeCCCCchH--HH------HHHHHH------HCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5899999875221 00 111111 2488999988865433333445566666677765 889999853
No 237
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.42 E-value=0.078 Score=37.66 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=26.4
Q ss_pred ccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCC
Q 031293 67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV 109 (162)
Q Consensus 67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~ 109 (162)
.+|.+++|+.+...-.......++.+...+.++ -+|+|+.|.-
T Consensus 236 ~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 236 SVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp GCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred HCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 357778777766544344445556666666654 4777888753
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.29 E-value=0.2 Score=37.51 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
+..+.++||||.... ... .... +... .....++.+++|+|+..+ .........+.. ..+ .-+|+||.|.
T Consensus 180 ~~DvVIIDTaG~l~~--d~~---l~~e-l~~i-~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 180 ARDLILVDTAGRLQI--DEP---LMGE-LARL-KEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG 249 (425)
T ss_dssp TCSEEEEECCCCSSC--CHH---HHHH-HHHH-HHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGG
T ss_pred CCCEEEEcCCCcccc--cHH---HHHH-HHHh-hhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCC
Confidence 345899999986321 110 1111 1111 111245888999998754 222333333332 244 5678899997
Q ss_pred CC
Q 031293 109 VF 110 (162)
Q Consensus 109 ~~ 110 (162)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 239
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.12 E-value=1.1 Score=32.34 Aligned_cols=88 Identities=8% Similarity=0.004 Sum_probs=49.0
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCCc--HHH----HHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVFP--IDV----ARRAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~~--~~~----~~~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
+.+++|..+............+.++..++|+ -+|+|+...... ... ......+++.....+....-.++....
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~ 317 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRT 317 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSS
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 6677777665432233445667788889995 788999976421 111 111223333333343322334555666
Q ss_pred CCCCHHHHHHHHHHh
Q 031293 142 SGAGIRSLRTVLSKI 156 (162)
Q Consensus 142 ~~~g~~~l~~~i~~~ 156 (162)
.-.|++.|......+
T Consensus 318 e~~g~~~L~~~~~~l 332 (349)
T 3ug7_A 318 EAKGIETLKQIAKIL 332 (349)
T ss_dssp CSCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 678887776655443
No 240
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.12 E-value=0.3 Score=33.53 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=41.6
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH------hCCce-EEEE
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTKY-QVVL 103 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~------~~~~~-ivv~ 103 (162)
..+.++|||+.- .......+ ..+|.+++++.+...-......+++.+.. .+.++ -+|+
T Consensus 112 yD~iiiD~pp~~------------~~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~ 176 (257)
T 1wcv_1 112 YDLVLLDAPPSL------------SPLTLNAL---AAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILV 176 (257)
T ss_dssp CSEEEEECCSSC------------CHHHHHHH---HHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred CCEEEEeCCCCC------------CHHHHHHH---HHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 458999998641 11122222 23599999988764211111223333332 14566 4899
Q ss_pred eccCCCCcHHHHHHHHHHHHHHH
Q 031293 104 TKTDTVFPIDVARRAMQIEESLK 126 (162)
Q Consensus 104 nK~Dl~~~~~~~~~~~~~~~~~~ 126 (162)
|+.|.-.. ...+..+.+++.++
T Consensus 177 N~~~~~~~-~~~~~~~~l~~~~~ 198 (257)
T 1wcv_1 177 TMYDGRTL-LAQQVEAQLRAHFG 198 (257)
T ss_dssp ESBCTTCS-HHHHHHHHHHHHHG
T ss_pred EeECCCcH-HHHHHHHHHHHHcc
Confidence 99986432 22333344554443
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.04 E-value=0.44 Score=33.96 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhc--CcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVST--RVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+..+.++||||.... .....+.... +...+.. ...++.+++++|+..+ .........+.+.-...-+|+||.|
T Consensus 186 ~~dvvIiDtpg~~~~--~~~l~~eL~~-l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D 260 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT--KKNLMEELRK-VHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLD 260 (306)
T ss_dssp TCSEEEEEECCCCSC--HHHHHHHHHH-HHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred CCCEEEEECCCchhh--HHHHHHHHHH-HHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 446999999985211 1111111111 2222211 1235788999998632 1222223333322222467789999
Q ss_pred CCCcH
Q 031293 108 TVFPI 112 (162)
Q Consensus 108 l~~~~ 112 (162)
.....
T Consensus 261 ~~~~g 265 (306)
T 1vma_A 261 GTAKG 265 (306)
T ss_dssp GCSCT
T ss_pred Cccch
Confidence 76433
No 242
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.98 E-value=0.11 Score=34.79 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=39.6
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh-CCceEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS-QTKYQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~-~~~~ivv~nK~Dl 108 (162)
...+.++|||+... .......+. .+|.+++++.+...-.......++.+... +.++.+|+|+.|.
T Consensus 67 ~yD~viiD~p~~~~-----------~~~~~~~l~---~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 132 (209)
T 3cwq_A 67 KYQNIVIDTQARPE-----------DEDLEALAD---GCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPP 132 (209)
T ss_dssp GCSEEEEEEECCCS-----------SSHHHHHHH---TSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCC
T ss_pred cCCEEEEeCCCCcC-----------cHHHHHHHH---HCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCC
Confidence 34589999986411 111222222 35899988877642212223345556553 5778899999996
Q ss_pred CC
Q 031293 109 VF 110 (162)
Q Consensus 109 ~~ 110 (162)
-.
T Consensus 133 ~~ 134 (209)
T 3cwq_A 133 YP 134 (209)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 243
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.93 E-value=0.56 Score=32.87 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=37.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHH------hCCc-eEEEE
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMER------SQTK-YQVVL 103 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~------~~~~-~ivv~ 103 (162)
..+.++|||+.. .......+. .+|.+++++.+...-.......++.+.. .+.+ .-+|+
T Consensus 155 yD~IiiD~pp~~------------~~~~~~~l~---~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~ 219 (298)
T 2oze_A 155 YDLIIIDTVPTP------------SVYTNNAIV---ASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVP 219 (298)
T ss_dssp CSEEEEEECSSC------------SHHHHHHHH---HCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CCEEEEECCCCc------------cHHHHHHHH---HCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 458999998651 111222332 2599999988764322222233444433 2566 45899
Q ss_pred eccCCC
Q 031293 104 TKTDTV 109 (162)
Q Consensus 104 nK~Dl~ 109 (162)
|+.|.-
T Consensus 220 n~~~~~ 225 (298)
T 2oze_A 220 YLVDTD 225 (298)
T ss_dssp EESCTT
T ss_pred EEECCC
Confidence 999964
No 244
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.48 E-value=0.1 Score=36.85 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=38.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
.+.++|||..... . ....-...+|.+++|+.+...-.......++.+...+.+ .-+|+|+.|.-
T Consensus 203 D~VIIDtpp~~~~----------~----da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 203 DLVLIDTPPILAV----------T----DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp SEEEEECCCTTTC----------T----HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CEEEEcCCCCcch----------H----HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 5889999875221 0 011112345888998887653323333455667666666 57888999854
No 245
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.43 E-value=0.2 Score=36.12 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=50.1
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~~ 110 (162)
..+.++||+|....... ..+.... +...+ ..|-.++++|+..+ ......+..+.+.--.-.+++||.|...
T Consensus 212 ~d~vliDtaG~~~~~~~--l~~eL~~-i~ral----~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a 282 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRN--LMDEMKK-IARVT----KPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADA 282 (328)
T ss_dssp CSEEEEEECCSCCTTTC--HHHHHHH-HHHHH----CCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCS
T ss_pred chhhHHhhccchhHHHH--HHHHHHH-HHHHh----cCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCcc
Confidence 45789999987322111 1111111 11222 24888999998655 2333344444432223477789999753
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHH
Q 031293 111 PIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRS 148 (162)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~ 148 (162)
.... .+ +.....+ .|+.+++ +|+++++
T Consensus 283 ~~G~--~l----~~~~~~~---~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGA--AL----SISYVID---APILFVG--VGQGYDD 309 (328)
T ss_dssp CCHH--HH----HHHHHHT---CCEEEEE--CSSSTTC
T ss_pred chhH--HH----HHHHHHC---CCEEEEe--CCCCccc
Confidence 3221 11 1222222 4888887 6666543
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.36 E-value=0.32 Score=34.90 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHh--cCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEecc
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVS--TRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKT 106 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~ 106 (162)
+..+.++||||..... ...-..... +...+. ....+|.+++++++..+ .........+.. ..+ .-+|+||.
T Consensus 191 ~yD~VIIDTpg~l~~~--~~l~~eL~~-~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK--TNLMAELEK-MNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGH--HHHHHHHHH-HHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEEEEECG
T ss_pred CCCEEEEcCCCccccc--HHHHHHHHH-HHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEEEEeCC
Confidence 4569999999973210 000000010 111221 11235888999998743 222222222221 233 35888999
Q ss_pred CCCCc
Q 031293 107 DTVFP 111 (162)
Q Consensus 107 Dl~~~ 111 (162)
|....
T Consensus 265 d~~~~ 269 (320)
T 1zu4_A 265 DSTSK 269 (320)
T ss_dssp GGCSC
T ss_pred CCCCc
Confidence 97543
No 247
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.90 E-value=0.24 Score=34.13 Aligned_cols=63 Identities=6% Similarity=-0.040 Sum_probs=37.9
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh--CCceEEEEeccCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS--QTKYQVVLTKTDT 108 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~--~~~~ivv~nK~Dl 108 (162)
..+.++|+|+.- .......+. .+|.+++++.+...-......+.+.+... +.++.+|+|+.+.
T Consensus 145 yD~viiD~pp~~------------~~~~~~~l~---~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSL------------DVTLKNALL---CSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSC------------SHHHHHHHT---TCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCEEEEECcCCc------------cHHHHHHHH---HCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 458999998641 222333333 35999999888643212222344555555 3577899999953
No 248
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.75 E-value=0.55 Score=35.88 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcC--cccceeEEEeecCCCCCccHHHHHHHHHH-hCCceEEEEecc
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTR--VSLKRVCLLIDTKWGVKPRDHELISLMER-SQTKYQVVLTKT 106 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~vid~~~~~~~~~~~~~~~l~~-~~~~~ivv~nK~ 106 (162)
+..+.++||+|...... ..-....+ +....+.. ...+-+++++|+..+ ......++.++. .++ -.+++||.
T Consensus 375 ~~DvVLIDTaGrl~~~~--~lm~EL~k-iv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~i-tgvIlTKL 448 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKS--HLMEELKK-IVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVGL-TGITLTKL 448 (503)
T ss_dssp TCSEEEECCCCSCCCHH--HHHHHHHH-HHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-SEEEEECG
T ss_pred CCCEEEEeCCCccchhh--hHHHHHHH-HHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcCC-CEEEEEcC
Confidence 34588999999733210 00011111 11222211 124678889998765 222333444433 233 35678999
Q ss_pred CCCC
Q 031293 107 DTVF 110 (162)
Q Consensus 107 Dl~~ 110 (162)
|-..
T Consensus 449 D~ta 452 (503)
T 2yhs_A 449 DGTA 452 (503)
T ss_dssp GGCS
T ss_pred CCcc
Confidence 9753
No 249
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.45 E-value=0.18 Score=34.67 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=37.1
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
...+.++|+|+.- .......+ ..+|.+++++.+...-.......++.+...+.+ .-+|+|+.|.
T Consensus 110 ~yD~viiD~~~~~------------~~~~~~~~---~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGL------------ERSAVIAI---AAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSS------------SHHHHHHH---HHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCC------------ChHHHHHH---HHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 3468999998641 11112222 235888888876532111223344555555655 5689999986
Q ss_pred C
Q 031293 109 V 109 (162)
Q Consensus 109 ~ 109 (162)
.
T Consensus 175 ~ 175 (263)
T 1hyq_A 175 L 175 (263)
T ss_dssp T
T ss_pred c
Confidence 4
No 250
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.33 E-value=0.13 Score=34.84 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=36.2
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~D 107 (162)
...+.++|||+.-. ......+ ..+|.+++++.+...-......+.+.+...+.+ +.+|+||.+
T Consensus 131 ~yD~viiD~pp~~~------------~~~~~~l---~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIE------------HLTRGTA---KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCT------------TCCHHHH---TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCEEEEeCCCccc------------HHHHHHH---HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 34689999975411 1112222 335899999887532111122334455555654 789999998
No 251
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.08 E-value=0.18 Score=34.55 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=35.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC---------CceE
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ---------TKYQ 100 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~---------~~~i 100 (162)
...+.++|+|+. . .......+ ..+|.+++++++...-.......++.+...+ .++-
T Consensus 113 ~yD~viiD~p~~-~-----------~~~~~~~l---~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 177 (260)
T 3q9l_A 113 DFEFIVCDSPAG-I-----------ETGALMAL---YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH 177 (260)
T ss_dssp TCSEEEEECCSS-S-----------SHHHHHHH---HTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEE
T ss_pred CCCEEEEcCCCC-C-----------CHHHHHHH---HhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceE
Confidence 356999999863 1 11222222 2358999998876321111222334443322 4578
Q ss_pred EEEeccCC
Q 031293 101 VVLTKTDT 108 (162)
Q Consensus 101 vv~nK~Dl 108 (162)
+|+|+.|.
T Consensus 178 ~v~N~~~~ 185 (260)
T 3q9l_A 178 LLLTRYNP 185 (260)
T ss_dssp EEEEEECH
T ss_pred EEEecCCc
Confidence 99999873
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.85 E-value=2.4 Score=29.88 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=36.8
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDT 108 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl 108 (162)
+..+.++||||.... ..... . .+...... ..++.+++++|+..+ .......+.+.. ..+ .-+|+||.|.
T Consensus 180 ~~D~viiDtpp~~~~--d~~~~---~-~l~~~~~~-~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~ 249 (295)
T 1ls1_A 180 ARDLILVDTAGRLQI--DEPLM---G-ELARLKEV-LGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG 249 (295)
T ss_dssp TCCEEEEECCCCSSC--CHHHH---H-HHHHHHHH-HCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGG
T ss_pred CCCEEEEeCCCCccc--cHHHH---H-HHHHHhhh-cCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCC
Confidence 456999999976221 11111 1 11111111 135788899998643 222233333332 234 5688999997
Q ss_pred CC
Q 031293 109 VF 110 (162)
Q Consensus 109 ~~ 110 (162)
..
T Consensus 250 ~~ 251 (295)
T 1ls1_A 250 DA 251 (295)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 253
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.84 E-value=0.13 Score=34.69 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
..+.++|+|+.- .......+ ..+|.+++++.+...-.......++.+...+.+ .-+|+|+.+..
T Consensus 112 yD~viiD~~~~~------------~~~~~~~~---~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 112 FDFILIDCPAGL------------QLDAMSAM---LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp CSEEEEECCSSS------------SHHHHHHH---TTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred CCEEEEECCCCc------------CHHHHHHH---HHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 458999998641 11122222 345888888877532111223344555555555 67899999864
No 254
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.56 E-value=2.7 Score=29.94 Aligned_cols=89 Identities=8% Similarity=0.024 Sum_probs=48.3
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC--cHHH----HHHHHHHHHHHHhcCCCCCCeEEeecC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF--PIDV----ARRAMQIEESLKANNSLVQPVMMVSSK 141 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~--~~~~----~~~~~~~~~~~~~~~~~~~~i~~~Sa~ 141 (162)
+.+++|..+............+.+...++|+ -+|+|+..... .... ....+.+.+.....+....-.++.-..
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~ 302 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKK 302 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 5778887665432233345667788888885 78889987542 1111 111123333333333322233455556
Q ss_pred CCCCHHHHHHHHHHhh
Q 031293 142 SGAGIRSLRTVLSKIA 157 (162)
Q Consensus 142 ~~~g~~~l~~~i~~~~ 157 (162)
.-.|++.|......++
T Consensus 303 e~~g~~~L~~~~~~l~ 318 (324)
T 3zq6_A 303 EAKGIETLEKIAEQLY 318 (324)
T ss_dssp CSCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6678888766655443
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.89 E-value=0.2 Score=35.38 Aligned_cols=64 Identities=8% Similarity=0.183 Sum_probs=35.2
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCceE-EEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTKYQ-VVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~~i-vv~nK 105 (162)
..+.++|||+.... . ........+|.+++++.+...-......+++.+... +.+++ +|+|+
T Consensus 157 yD~ViiD~p~~~~~----------~----~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~ 222 (307)
T 3end_A 157 TDVVIFDVLGDVVC----------G----GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANR 222 (307)
T ss_dssp CSEEEEEECCSSCC----------G----GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEES
T ss_pred CCEEEEeCCCccch----------H----HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEec
Confidence 45899999864211 0 011123446899999876532111222334555542 34544 89999
Q ss_pred cCC
Q 031293 106 TDT 108 (162)
Q Consensus 106 ~Dl 108 (162)
.+.
T Consensus 223 ~~~ 225 (307)
T 3end_A 223 SRA 225 (307)
T ss_dssp CSC
T ss_pred CCc
Confidence 984
No 256
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.35 E-value=0.97 Score=32.81 Aligned_cols=87 Identities=5% Similarity=-0.039 Sum_probs=46.9
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC-c----HH----HHHHHHHHHHHHHhcCCCCCCeE--
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF-P----ID----VARRAMQIEESLKANNSLVQPVM-- 136 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~-~----~~----~~~~~~~~~~~~~~~~~~~~~i~-- 136 (162)
..+++|..+............+.+...++|+ -+|+|+..... . .. .....+.+.+.-..... .+++
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~--~~~~~~ 309 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYED--YHLVKM 309 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTT--SEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccC--CCEEEe
Confidence 5677777665433333445667788888885 78889987533 1 11 11222233332222322 3444
Q ss_pred EeecCCCCCHHHHHHHHHHhh
Q 031293 137 MVSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 137 ~~Sa~~~~g~~~l~~~i~~~~ 157 (162)
+.-+..-.|++.|...-..++
T Consensus 310 pl~~~e~~G~~~L~~~~~~l~ 330 (348)
T 3io3_A 310 PLLGCEIRGVENLKKFSKFLL 330 (348)
T ss_dssp ECCSSCCCSHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHc
Confidence 444555678887766555443
No 257
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.36 E-value=0.34 Score=32.77 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCC---ceEEEEeccC
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQT---KYQVVLTKTD 107 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~---~~ivv~nK~D 107 (162)
..+.++|+|+.-. ...... ...+|.+++++.+...-......+++.+...+. .+-+|+|+.+
T Consensus 119 yD~viiD~p~~~~------------~~~~~~---l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~ 183 (245)
T 3ea0_A 119 YDYIIVDFGASID------------HVGVWV---LEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD 183 (245)
T ss_dssp CSEEEEEEESSCC------------TTHHHH---GGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT
T ss_pred CCEEEEeCCCCCc------------hHHHHH---HHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC
Confidence 4589999986411 112222 234589999887753211222334455555442 3789999998
Q ss_pred CC
Q 031293 108 TV 109 (162)
Q Consensus 108 l~ 109 (162)
.-
T Consensus 184 ~~ 185 (245)
T 3ea0_A 184 TN 185 (245)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 258
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.84 E-value=3.9 Score=28.45 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=11.3
Q ss_pred CceEEEEeccCCCC
Q 031293 97 TKYQVVLTKTDTVF 110 (162)
Q Consensus 97 ~~~ivv~nK~Dl~~ 110 (162)
.++.+|+|+.|.-.
T Consensus 179 ~~~~vV~N~~~~~~ 192 (286)
T 2xj4_A 179 MDWVVLRNRLATTE 192 (286)
T ss_dssp CEEEEEEECCTTCC
T ss_pred ccEEEEEeeecCCC
Confidence 67789999999754
No 259
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=85.83 E-value=7.7 Score=27.68 Aligned_cols=40 Identities=5% Similarity=0.012 Sum_probs=26.7
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
+.+++|..+............+.+...++|+ -+|+|+...
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 4677777765432233345667788788885 678999983
No 260
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.33 E-value=2.9 Score=30.14 Aligned_cols=88 Identities=6% Similarity=-0.047 Sum_probs=45.7
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCCC---c-HHH----HHHHHHHHHHHHhcCCCCCCeE--E
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTVF---P-IDV----ARRAMQIEESLKANNSLVQPVM--M 137 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~~---~-~~~----~~~~~~~~~~~~~~~~~~~~i~--~ 137 (162)
..+++|..+..-.........+.+...++|+ -+|+|+..... . ... ....+.+.+.-..... ..+++ +
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~-~~~~~~~p 301 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDE-EFNVVKMP 301 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccC-CCCEEEec
Confidence 4677777665432333445667888889885 78889986421 1 111 1122222222222211 02444 4
Q ss_pred eecCCCCCHHHHHHHHHHhh
Q 031293 138 VSSKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 138 ~Sa~~~~g~~~l~~~i~~~~ 157 (162)
.-+..-.|++.|...-..++
T Consensus 302 l~~~e~~G~~~L~~~~~~l~ 321 (334)
T 3iqw_A 302 LLVEEVRGKERLEKFSEMLI 321 (334)
T ss_dssp CCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHc
Confidence 44455677777766555444
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.26 E-value=7.9 Score=27.27 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhC-Cc-eEEEEeccC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQ-TK-YQVVLTKTD 107 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~-~~-~ivv~nK~D 107 (162)
+..+.++||||..... . ..+.. +...+. ....+.+++|+|+..+. ..+.+..+... .+ .-+++||.|
T Consensus 182 ~~dlvIiDT~G~~~~~--~---~~~~e-l~~~l~-~~~~~~~~lVl~at~~~----~~~~~~~~~~~~l~~~giVltk~D 250 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD--P---QYIDE-LKETIP-FESSIQSFLVLSATAKY----EDMKHIVKRFSSVPVNQYIFTKID 250 (296)
T ss_dssp GSSEEEEECCCCCTTS--H---HHHHH-HHHHSC-CCTTEEEEEEEETTBCH----HHHHHHTTTTSSSCCCEEEEECTT
T ss_pred CCCEEEEeCCCCChhh--H---HHHHH-HHHHHh-hcCCCeEEEEEECCCCH----HHHHHHHHHHhcCCCCEEEEeCCC
Confidence 4569999999983221 0 11111 222222 11246788899887531 12222222221 22 356779999
Q ss_pred CCCc
Q 031293 108 TVFP 111 (162)
Q Consensus 108 l~~~ 111 (162)
....
T Consensus 251 ~~~~ 254 (296)
T 2px0_A 251 ETTS 254 (296)
T ss_dssp TCSC
T ss_pred cccc
Confidence 8643
No 262
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=84.37 E-value=5 Score=29.07 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=27.8
Q ss_pred ccceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccC
Q 031293 67 SLKRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTD 107 (162)
Q Consensus 67 ~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~D 107 (162)
.++.+++|..+............+.+...++++ -+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 357888888876432233345567777778774 68899998
No 263
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=84.08 E-value=2.4 Score=31.18 Aligned_cols=34 Identities=3% Similarity=-0.052 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
+..+.++|||..- .......+. .+|.+++++.+.
T Consensus 247 ~yD~VIID~pP~~------------~~~~~~al~---~aD~vliv~~p~ 280 (403)
T 3ez9_A 247 DYDFIFIDTGPHL------------DPFLLNGLA---ASDLLLTPTPPA 280 (403)
T ss_dssp GCSEEEEEECSSC------------SHHHHHHHH---HCSEEEEEECSS
T ss_pred cCCEEEEECCCCc------------cHHHHHHHH---HCCEEEEEecCc
Confidence 3469999998431 222233332 349999988764
No 264
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=82.86 E-value=4.2 Score=31.55 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=43.7
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCCC---cHHH----HHHHHHHHHHHHhcCCCCCCeEEee
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTVF---PIDV----ARRAMQIEESLKANNSLVQPVMMVS 139 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~~---~~~~----~~~~~~~~~~~~~~~~~~~~i~~~S 139 (162)
++.+++|..+............+.+...+++ .-+|+|+.+-.. .... ....+.+. .+..........++.-
T Consensus 490 ~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~v~~iP~~ 568 (589)
T 1ihu_A 490 RTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIE-SVKRQHASRVALVPVL 568 (589)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHH-HHHTTTCSSEEEEECC
T ss_pred CCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHH-HHHHhcCCcEEEccCC
Confidence 4778888776532222334456677777777 478899987531 1111 12222232 2333322112344555
Q ss_pred cCCCCCHHHHHH
Q 031293 140 SKSGAGIRSLRT 151 (162)
Q Consensus 140 a~~~~g~~~l~~ 151 (162)
...-.|++.|..
T Consensus 569 ~~e~~g~~~l~~ 580 (589)
T 1ihu_A 569 ASEPTGIDKLKQ 580 (589)
T ss_dssp SSCCCSHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 666778777654
No 265
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=80.66 E-value=2.5 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=22.3
Q ss_pred eeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCCC
Q 031293 70 RVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDTV 109 (162)
Q Consensus 70 ~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl~ 109 (162)
.++++..+...-.......++.+...+.++ -+|+|+.|.-
T Consensus 140 ~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 140 PVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 467777764321111222334555556774 5889999864
No 266
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=80.49 E-value=1.4 Score=32.57 Aligned_cols=60 Identities=5% Similarity=0.018 Sum_probs=39.1
Q ss_pred hCCceEEEEeccCC--C-CcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCC---------------------CCCHHHHH
Q 031293 95 SQTKYQVVLTKTDT--V-FPIDVARRAMQIEESLKANNSLVQPVMMVSSKS---------------------GAGIRSLR 150 (162)
Q Consensus 95 ~~~~~ivv~nK~Dl--~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~---------------------~~g~~~l~ 150 (162)
...|+++++|+.|. . +. ....+.+++.....++ ..+++++||.. +.|++.+.
T Consensus 223 t~kp~~y~~Nv~e~~~~~~~---~~~~~~~~~~~~~~~p-~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i 298 (392)
T 1ni3_A 223 TAKPVIYLVNMSERDFLRQK---NKYLPKIKKWIDENSP-GDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKII 298 (392)
T ss_dssp GGSCEEEEEECCHHHHTTTC---CSSHHHHHHHHHTTST-TCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHH
T ss_pred ccCceEEEEEecchhhcccc---hHHHHHHHHHHHhcCC-CCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHH
Confidence 36899999999983 1 11 1123344444444331 14799999876 68899988
Q ss_pred HHHHHhhh
Q 031293 151 TVLSKIAR 158 (162)
Q Consensus 151 ~~i~~~~~ 158 (162)
....+++.
T Consensus 299 ~~~~~~L~ 306 (392)
T 1ni3_A 299 VTGYNALN 306 (392)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88877664
No 267
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=76.51 E-value=11 Score=29.30 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=26.5
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCc-eEEEEeccCCC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTK-YQVVLTKTDTV 109 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~-~ivv~nK~Dl~ 109 (162)
+.+++|..+...........++.+...+++ .-+|+|+..-.
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 467888777643223334456777777777 46789999753
No 268
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=75.67 E-value=4.6 Score=30.44 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=26.1
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHH
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLM 92 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l 92 (162)
.+.++||||.+.... ..+.-..++ ...... +. ++|.+....+...+.+.++.+
T Consensus 141 ~vvllDTeG~~~~~~---~~~~d~~if-al~~lL--Ss--~~IyN~~~~i~~~~l~~L~~~ 193 (447)
T 3q5d_A 141 AVLLMDTQGTFDSQS---TLRDSATVF-ALSTMI--SS--IQVYNLSQNVQEDDLQHLQLF 193 (447)
T ss_dssp EEEEEEEECCCSSHH---HHHHHHHHH-HHHHHH--CS--EEEEEESSSCCHHHHHHHHHH
T ss_pred eEEEEcCCccccccc---chhhhHHHH-HHHHHH--hh--HHHHhhcccccHHHHHHHHHH
Confidence 489999999865421 111111111 110000 12 445555666767777766543
No 269
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=73.40 E-value=8.7 Score=28.09 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=20.7
Q ss_pred CCceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecC
Q 031293 30 GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTK 78 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~ 78 (162)
...+.++|||..- .......+. .+|.+++++.+.
T Consensus 244 ~yD~ViiD~pp~~------------~~~~~~~l~---~aD~vliv~~p~ 277 (398)
T 3ez2_A 244 DYDFILVDSGPHL------------DAFLKNALA---SANILFTPLPPA 277 (398)
T ss_dssp TCSEEEEEECSCC------------SHHHHHHHH---HCSEEEEEECCS
T ss_pred cCCEEEEeCCCCc------------cHHHHHHHH---HCCEEEEEecCc
Confidence 3469999998431 222333333 359999988764
No 270
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.67 E-value=19 Score=25.40 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=24.2
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHH-hCCceEEEEeccCCCC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMER-SQTKYQVVLTKTDTVF 110 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~-~~~~~ivv~nK~Dl~~ 110 (162)
++.+++++|+..+. .....+..+.+ .++ .++++||.|...
T Consensus 221 P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~-t~iivTh~d~~a 261 (304)
T 1rj9_A 221 PKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-TGVIVTKLDGTA 261 (304)
T ss_dssp CSEEEEEEETTBCT--HHHHHHHHHHHHHCC-SEEEEECTTSSC
T ss_pred CCeEEEEEcHHHHH--HHHHHHHHHHHHcCC-cEEEEECCcccc
Confidence 56788899987652 22333343432 344 567779999763
No 271
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=71.63 E-value=14 Score=28.28 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEee--cCCCCCHHHHHHHHHHhh
Q 031293 87 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS--SKSGAGIRSLRTVLSKIA 157 (162)
Q Consensus 87 ~~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S--a~~~~g~~~l~~~i~~~~ 157 (162)
.+.+.++..++|+++++|+...-.+.+.+ .+++.+...+. ++..+. ++-|+|-.+|-+.+.+.+
T Consensus 351 kHIen~~~fGvpvVVaiN~F~tDT~aEi~----~v~~~~~~~G~---~~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 351 VHVENLRKFNLPVVVALNRFSTDTEKEIA----YVVKECEKLGV---RVAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHTTCCEEEEEECCTTCCHHHHH----HHHHHHHTTTC---EEEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCeEEEEeCCCCCCHHHHH----HHHHHHHHcCC---CEEEechhhccchhHHHHHHHHHHHh
Confidence 34556667899999999998765555553 45555555543 443322 345777777777766654
No 272
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=70.20 E-value=7.8 Score=26.37 Aligned_cols=67 Identities=3% Similarity=0.012 Sum_probs=34.4
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCc-eEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTK-YQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~-~ivv~nK 105 (162)
..+.++||||.... ..+..... ...+|.+++++.+...-......+++.+... +.+ .-+|+|+
T Consensus 116 yD~iiiD~~~~~~~----------~~~~~~~~--~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~ 183 (269)
T 1cp2_A 116 LDYVFYDVLGDVVC----------GGFAMPIR--EGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNS 183 (269)
T ss_dssp CSEEEEEEECSSCS----------TTTTHHHH--TTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEEC
T ss_pred CCEEEEeCCchhhh----------hhhhhhhh--HhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 46899999975211 00111111 1246888888876532111112233444432 445 4688999
Q ss_pred cCCC
Q 031293 106 TDTV 109 (162)
Q Consensus 106 ~Dl~ 109 (162)
.+..
T Consensus 184 ~~~~ 187 (269)
T 1cp2_A 184 RKVA 187 (269)
T ss_dssp CSSS
T ss_pred CCcc
Confidence 8743
No 273
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=66.65 E-value=11 Score=26.12 Aligned_cols=66 Identities=5% Similarity=0.041 Sum_probs=33.0
Q ss_pred CceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHh----CCc-eEEEEec
Q 031293 31 TKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERS----QTK-YQVVLTK 105 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~----~~~-~ivv~nK 105 (162)
..+.++||||.-.. ..+.... ....+|.+++++.+...-......+++.+... +.+ .-+|+|+
T Consensus 119 yD~ViID~~~~~~~----------~~~~~~~--~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~ 186 (289)
T 2afh_E 119 LDFVFYDVLGDVVC----------GGFAMPI--RENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNS 186 (289)
T ss_dssp CSEEEEEEECSSCC----------TTTTHHH--HTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEEC
T ss_pred CCEEEEeCCCcccc----------chhhhhh--hhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 45899999875111 0011111 01346888888776531111111233444332 455 4688899
Q ss_pred cCC
Q 031293 106 TDT 108 (162)
Q Consensus 106 ~Dl 108 (162)
.+.
T Consensus 187 ~~~ 189 (289)
T 2afh_E 187 RNT 189 (289)
T ss_dssp CCC
T ss_pred CCc
Confidence 874
No 274
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=63.63 E-value=20 Score=22.83 Aligned_cols=50 Identities=6% Similarity=-0.023 Sum_probs=31.4
Q ss_pred HHHHHHhcCcccceeEEEeecCCCCCccHHHHH--HHHHHhCCceEEEEecc
Q 031293 57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELI--SLMERSQTKYQVVLTKT 106 (162)
Q Consensus 57 ~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~--~~l~~~~~~~ivv~nK~ 106 (162)
+.+.-+.....||+++.++|+..+.....--.+ -+....++|++++.+..
T Consensus 57 i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~d~ 108 (161)
T 2f62_A 57 IRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEcCc
Confidence 344445666778999999996433333332232 34556799999986643
No 275
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=53.22 E-value=13 Score=28.65 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=38.2
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+.++.+++|+++++|+...-.+.+.+ .+++.+...+. ++..+=++-|+|-.+|-+.+.+.++
T Consensus 366 Hien~~~fGvpvVVaiN~F~tDT~aEi~----~v~~~~~~~G~---~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 366 HIENIGKFGVPAVVAINAFPTDTEAELN----LLYELCAKAGA---EVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp HHHHHHTTTCCEEEEEECCTTCCHHHHH----HHHHHCCSSEE---EEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEeCCCCCCHHHHH----HHHHHHHHcCC---CEEEEecccchhHHHHHHHHHHHHh
Confidence 4455666799999999998765555543 44444444332 2221124457777777766665543
No 276
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=50.68 E-value=8.4 Score=15.74 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=9.1
Q ss_pred CCceEEEcCCCC
Q 031293 30 GTKLCLVDLPGY 41 (162)
Q Consensus 30 ~~~~~ivDtpG~ 41 (162)
++-+.+.|-||+
T Consensus 4 grlvylldgpgy 15 (26)
T 4a1x_C 4 GRLVYLLDGPGY 15 (26)
T ss_pred ceEEEEecCCCC
Confidence 344678999998
No 277
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=50.54 E-value=42 Score=21.14 Aligned_cols=47 Identities=2% Similarity=-0.165 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 55 EELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 55 ~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
......-+...+.||+++.+++. ...-...=+-+....++|++++.+
T Consensus 56 ~~i~~~d~~~i~~aD~vvA~l~~---~d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 56 QFIHEQNLNWLQQADVVVAEVTQ---PSLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHHHHHHHHCSEEEEECSS---CCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCEEEEeCCC---CCCCHHHHHHHHHHcCCeEEEEEe
Confidence 34455556666778999998872 212222223455567999998877
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=47.68 E-value=19 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=15.3
Q ss_pred CCeEEeecCCCCCHHHHHHHHHHh
Q 031293 133 QPVMMVSSKSGAGIRSLRTVLSKI 156 (162)
Q Consensus 133 ~~i~~~Sa~~~~g~~~l~~~i~~~ 156 (162)
.|++.++..+..++..+..++...
T Consensus 105 IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 105 TPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeEEEECCchhHHHHHHHHHHHHh
Confidence 366666666666666666666553
No 279
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=46.79 E-value=53 Score=20.78 Aligned_cols=47 Identities=2% Similarity=-0.187 Sum_probs=28.2
Q ss_pred HHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 58 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 58 ~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
...-+.....||+++.+++ ....-...=+-+....++|++++.+..+
T Consensus 68 ~~~d~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l~~~~~ 114 (165)
T 2khz_A 68 HEQDLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEEECTTT
T ss_pred HHHHHHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEEEcCCC
Confidence 3344455566799999886 1212121222455667999999877653
No 280
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=45.94 E-value=24 Score=19.50 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.2
Q ss_pred HHHHHHHhCCceEEEEeccC
Q 031293 88 LISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~D 107 (162)
+.......++|++.+-+|.+
T Consensus 45 i~~lc~~~~Ip~~~v~sk~e 64 (82)
T 3v7e_A 45 VVSLAEDQGISVSMVESMKK 64 (82)
T ss_dssp HHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHcCCCEEEECCHHH
Confidence 33455677999999977754
No 281
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=43.73 E-value=42 Score=21.39 Aligned_cols=50 Identities=8% Similarity=-0.040 Sum_probs=30.4
Q ss_pred HHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEecc
Q 031293 56 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 56 ~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~ 106 (162)
...+.-+.....||+++.++|..++ ..-...=+-+....++|++.+.+-.
T Consensus 58 ~i~~~D~~~i~~aD~viA~ldg~~~-D~Gt~~EiG~A~a~gkPVi~~~~D~ 107 (162)
T 3ehd_A 58 MIALADTENVLASDLLVALLDGPTI-DAGVASEIGVAYAKGIPVVALYTDS 107 (162)
T ss_dssp HHHHHHHHHHHTCSEEEEECCSSSC-CHHHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCC-CCCHHHHHHHHHHCCCEEEEEEcCc
Confidence 3445555666778999999985432 1111112245556799988886644
No 282
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=42.64 E-value=68 Score=26.36 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHHhcCcccceeEEEeecC-----C-------CCCccHHHHHHHHHHhCCceEEEEe
Q 031293 57 LVKEYVSTRVSLKRVCLLIDTK-----W-------GVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 57 ~~~~~~~~~~~~~~vi~vid~~-----~-------~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
.+.++....+.+|.+|+++--. + .+.....++++.+...+.|+|+|++
T Consensus 563 ~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~tVVVl~ 622 (845)
T 3abz_A 563 EIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQ 622 (845)
T ss_dssp HHHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEEEE
T ss_pred hHHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCCEEEEEe
Confidence 3555555566789999998432 1 2244456777888888889888877
No 283
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=42.10 E-value=80 Score=22.90 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=25.3
Q ss_pred CCc-eEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHH
Q 031293 96 QTK-YQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154 (162)
Q Consensus 96 ~~~-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~ 154 (162)
+.+ .=+++|..+.- +.+.+...+.+++..+ .| +...-..|.+.|.+.+.
T Consensus 298 ~~~V~Gi~lN~~~~~-~~~~~~~~~~ie~~~g------lP---v~d~~r~g~~~l~~~~~ 347 (349)
T 2obn_A 298 TVPVVGIALNTAHLD-EYAAKEAIAHTIAETG------LP---CTDVVRFGADVLLDAVM 347 (349)
T ss_dssp CCCEEEEEEECTTSC-HHHHHHHHHHHHHHHC------SC---EECHHHHCSHHHHHHHH
T ss_pred CCcEEEEEEECCCCC-HHHHHHHHHHHHHHHC------CC---EEEEecCCHHHHHHHHh
Confidence 344 46667877654 3334444455544433 12 23333457777776654
No 284
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=41.99 E-value=23 Score=21.29 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCceEEEEeccC
Q 031293 87 ELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 87 ~~~~~l~~~~~~~ivv~nK~D 107 (162)
.+-......++|++.+-+|.+
T Consensus 54 ~l~~lc~~~~VP~~~v~sk~e 74 (121)
T 2lbw_A 54 HIPVLCEDHSVPYIFIPSKQD 74 (121)
T ss_dssp HHHHHHHHTCCCEEECCCHHH
T ss_pred HHHHHHHhcCCcEEEECCHHH
Confidence 344556777999999877654
No 285
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=39.97 E-value=24 Score=25.43 Aligned_cols=34 Identities=6% Similarity=-0.011 Sum_probs=22.2
Q ss_pred CCceEEEcCCC-CcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCC
Q 031293 30 GTKLCLVDLPG-YGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKW 79 (162)
Q Consensus 30 ~~~~~ivDtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~ 79 (162)
...+.++|||. . .......+.. +|.+++++.+..
T Consensus 153 ~yD~VIID~pP~l-------------~~~~~~aL~~---aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSL-------------GPFNRTVLLG---CDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCC-------------SHHHHHHHTT---CSEEEEEECCSH
T ss_pred CCCEEEEECCCCc-------------CHHHHHHHHH---CCEEEEEecCCh
Confidence 35699999984 5 2333344333 599999988753
No 286
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=39.58 E-value=63 Score=20.61 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=27.5
Q ss_pred HHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEE
Q 031293 58 VKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVL 103 (162)
Q Consensus 58 ~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~ 103 (162)
...-+...+.||+++.++|....=.....+ +-+....++|++.+-
T Consensus 72 ~~~D~~~i~~aD~vVA~ldg~~~D~GTa~E-iGyA~algKPVv~l~ 116 (167)
T 1s2d_A 72 YQNDLTGISNATCGVFLYDMDQLDDGSAFX-IGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEESSSCCHHHHHH-HHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCCCceee-hhhHhhCCCeEEEEE
Confidence 444455566789999999975421111122 234556799998873
No 287
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=38.94 E-value=27 Score=20.72 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=20.8
Q ss_pred CcccceeEEEeecCCCCCccHHHHH---HHHHHhCCceEEEE
Q 031293 65 RVSLKRVCLLIDTKWGVKPRDHELI---SLMERSQTKYQVVL 103 (162)
Q Consensus 65 ~~~~~~vi~vid~~~~~~~~~~~~~---~~l~~~~~~~ivv~ 103 (162)
.+.++++++++..... ....+. +...+.++|++.|-
T Consensus 36 I~~~~~vIvL~G~~t~---~s~wv~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 36 PEDADAVIVLAGLWGT---RRDEILGAVDLARKSSKPIITVR 74 (111)
T ss_dssp SSSCSEEEEEGGGTTT---SHHHHHHHHHHHTTTTCCEEEEC
T ss_pred cccCCEEEEEeCCCcC---CChHHHHHHHHHHHcCCCEEEEE
Confidence 3567888888776432 122222 33345678977773
No 288
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=37.68 E-value=56 Score=20.58 Aligned_cols=49 Identities=4% Similarity=-0.163 Sum_probs=29.8
Q ss_pred HHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEecc
Q 031293 57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKT 106 (162)
Q Consensus 57 ~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~ 106 (162)
..+.=+...+.||+++.++|..++=.....+ +-+....++|++.+..+-
T Consensus 68 I~~~D~~~i~~aD~vvA~ldg~~~D~GT~~E-iGyA~A~gkPVv~~~~~~ 116 (157)
T 1f8y_A 68 TYNNDLNGIKTNDIMLGVYIPDEEDVGLGME-LGYALSQGKYVLLVIPDE 116 (157)
T ss_dssp HHHHHHHHHHTSSEEEEECCGGGCCHHHHHH-HHHHHHTTCEEEEEECGG
T ss_pred HHHHhHHHHHhCCEEEEEcCCCCCCccHHHH-HHHHHHCCCeEEEEEcCC
Confidence 3444455667789999999864321111122 235566799998886543
No 289
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=37.03 E-value=28 Score=22.82 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=21.4
Q ss_pred cccceeEEEeecCCCCCccH-HHHHHHHHHhCCceEEEEec
Q 031293 66 VSLKRVCLLIDTKWGVKPRD-HELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 66 ~~~~~vi~vid~~~~~~~~~-~~~~~~l~~~~~~~ivv~nK 105 (162)
++++.+++++.....-...- .++-..+.+.++|+|+|--.
T Consensus 78 ~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 78 DNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp HTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETT
T ss_pred HhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECC
Confidence 45578888776654322211 11222222558998888654
No 290
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=36.61 E-value=43 Score=20.30 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=21.2
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccC
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~D 107 (162)
+.++++--|+... .....+-.+....++|++.+-+|.+
T Consensus 41 a~LViiA~D~~p~--~~~~~i~~lc~~~~Ip~~~v~sk~~ 78 (126)
T 2xzm_U 41 ALFVCVAEDCDQG--NYVKLVKALCAKNEIKYVSVPKRAS 78 (126)
T ss_dssp CSEEEEESSCCST--THHHHHHHHHHHTTCCEEEESCSHH
T ss_pred ceEEEEeCCCChH--HHHHHHHHHHHHhCCCEEEECCHHH
Confidence 3455554455432 2222333455667999998866654
No 291
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=34.31 E-value=39 Score=20.07 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=13.2
Q ss_pred HHHHHHHhCCceEEEEeccC
Q 031293 88 LISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~D 107 (162)
+.......++|++.+.+|.+
T Consensus 62 l~~lc~~~~Vp~~~~~sk~e 81 (119)
T 1rlg_A 62 LPLLCEEKNVPYIYVKSKND 81 (119)
T ss_dssp HHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHcCCCEEEeCCHHH
Confidence 33445567899888876653
No 292
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=32.92 E-value=97 Score=24.91 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=28.5
Q ss_pred HHhcCcccceeEEEeecC--CC---------------CCccHHHHHHHHHHhCCceEEEEec
Q 031293 61 YVSTRVSLKRVCLLIDTK--WG---------------VKPRDHELISLMERSQTKYQVVLTK 105 (162)
Q Consensus 61 ~~~~~~~~~~vi~vid~~--~~---------------~~~~~~~~~~~l~~~~~~~ivv~nK 105 (162)
.......+|.+++++... ++ +.....++++.+...+.|+++|++=
T Consensus 421 a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~~~~~VVVl~s 482 (713)
T 3zyz_A 421 GASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVVVHS 482 (713)
T ss_dssp HHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHHCSCEEEEEEE
T ss_pred HHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHHHHhCCCeEEEEec
Confidence 333445679999988432 21 1223456777777788898888763
No 293
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=30.89 E-value=44 Score=19.86 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHhCCceEEEEeccCC
Q 031293 90 SLMERSQTKYQVVLTKTDT 108 (162)
Q Consensus 90 ~~l~~~~~~~ivv~nK~Dl 108 (162)
......++|++++-+|.+|
T Consensus 62 ~lC~~~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 62 ALCKKMGVPYAIVKGKARL 80 (113)
T ss_dssp HHHHHTTCCCEECSCSTTT
T ss_pred HHHHHcCCCEEEECCHHHH
Confidence 4556779999999998775
No 294
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=30.65 E-value=68 Score=17.30 Aligned_cols=45 Identities=11% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEeecCCCCCHHHHHHHHHHhhh
Q 031293 113 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.+..++.+++.+...+.+. --+.+||.+.+--.++++.|.++++
T Consensus 30 eleralqelekalaragarn-vqitisaendeqakelleliarllq 74 (96)
T 2jvf_A 30 ELERALQELEKALARAGARN-VQITISAENDEQAKELLELIARLLQ 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSE-EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccc-eEEEEEecChHHHHHHHHHHHHHHH
Confidence 44455555555554444332 2345677776666666666666554
No 295
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Probab=30.30 E-value=85 Score=20.67 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.0
Q ss_pred CceEEEcCCCCccccc
Q 031293 31 TKLCLVDLPGYGFAYA 46 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~ 46 (162)
.++..+|.||+|....
T Consensus 43 ~~vi~~Dl~G~G~S~~ 58 (269)
T 2xmz_A 43 YHVITIDLPGHGEDQS 58 (269)
T ss_dssp SEEEEECCTTSTTCCC
T ss_pred CeEEEecCCCCCCCCC
Confidence 3688999999998743
No 296
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=29.79 E-value=53 Score=20.08 Aligned_cols=54 Identities=26% Similarity=0.306 Sum_probs=30.2
Q ss_pred HHHHHHHhCCceEEEEeccCCCCcHHHHHHHHHHHHHHHhcCCCCCCe--EEeecCCCCCHHHHHHHHHHhhh
Q 031293 88 LISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPV--MMVSSKSGAGIRSLRTVLSKIAR 158 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~Sa~~~~g~~~l~~~i~~~~~ 158 (162)
+.......++|++.+.+|.+| -..++.. ..+ +.+--..+..+.++++.+.+.++
T Consensus 76 l~~lc~~~~IP~~~v~sk~eL-------------G~a~G~~----~~v~~vaI~d~~~s~i~~~~~~~~~~~~ 131 (135)
T 2aif_A 76 LPLVCEDKNTPYVFVRSKVAL-------------GRACGVS----RPVIAAAITSKDGSSLSSQITELKDQIE 131 (135)
T ss_dssp HHHHHHHTTCCEEEESCHHHH-------------HHHTTCS----SCCSEEEEECCTTCTTHHHHHHHHHTTC
T ss_pred HHHHHHhcCCcEEEECCHHHH-------------HHHhCCC----CcEEEEEEEcCCcHHHHHHHHHHHHHHH
Confidence 334556678999888766432 1222321 233 44444455667777777776654
No 297
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=29.10 E-value=1.3e+02 Score=20.26 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=23.0
Q ss_pred eeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEeccCCC
Q 031293 70 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTV 109 (162)
Q Consensus 70 ~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~nK~Dl~ 109 (162)
-+++|.++..+.-......++.+...+.+.=+|+|+.+-.
T Consensus 163 pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~ 202 (242)
T 3qxc_A 163 KMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202 (242)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTC
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 4677777765421122223345555565577888988753
No 298
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=28.11 E-value=34 Score=20.45 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=13.3
Q ss_pred HHHHHHHhCCceEEEEeccC
Q 031293 88 LISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~D 107 (162)
+.......++|++.+.+|.+
T Consensus 64 l~~lc~~~~VP~~~v~sk~e 83 (120)
T 1xbi_A 64 LPYLCEEKGIPYAYVASKQD 83 (120)
T ss_dssp HHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHhcCCCEEEeCCHHH
Confidence 33445567899888876653
No 299
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=27.44 E-value=94 Score=17.94 Aligned_cols=15 Identities=47% Similarity=0.822 Sum_probs=11.6
Q ss_pred CceEEEcCCCCcccc
Q 031293 31 TKLCLVDLPGYGFAY 45 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~ 45 (162)
..+..+|.||+|...
T Consensus 43 ~~v~~~d~~G~G~s~ 57 (131)
T 2dst_A 43 YAFYLLDLPGYGRTE 57 (131)
T ss_dssp SEEEEECCTTSTTCC
T ss_pred cEEEEECCCCCCCCC
Confidence 457788999998764
No 300
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.94 E-value=75 Score=22.90 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=7.0
Q ss_pred cceeEEEeecC
Q 031293 68 LKRVCLLIDTK 78 (162)
Q Consensus 68 ~~~vi~vid~~ 78 (162)
+|.+++++.+.
T Consensus 282 aD~vivv~~~~ 292 (373)
T 3fkq_A 282 AWRIIVVNDGS 292 (373)
T ss_dssp CSEEEEEECCC
T ss_pred CCEEEEEecCC
Confidence 47777776554
No 301
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=26.45 E-value=2.1e+02 Score=21.64 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=28.5
Q ss_pred ceEEEcCCCCcccccCHHHHHHHHHHHHHHHhcCcccceeEEEeecCCCCCccHHHHHHHHH
Q 031293 32 KLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLME 93 (162)
Q Consensus 32 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~vid~~~~~~~~~~~~~~~l~ 93 (162)
.+.++||.|.++........ ...+.-..+- .-++|.+....+...+.+.+.++-
T Consensus 141 ~vlllDTEG~~d~~~~~~~d--~~ifaLa~LL------SS~~IyN~~~~i~~~~L~~L~~~t 194 (457)
T 4ido_A 141 AVLLMDTQGTFDSQSTLRDS--ATVFALSTMI------SSIQVYNLSQNVQEDDLQHLQLFT 194 (457)
T ss_dssp EEEEEEECCBTCTTCCHHHH--HHHHHHHHHH------CSEEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEEeccCCCCcccCcccc--HHHHHHHHHH------hhheeecccccCCHHHHHHHHHHH
Confidence 38899999997664432111 1112111111 124455655567777777765543
No 302
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=26.29 E-value=1.3e+02 Score=19.31 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=13.7
Q ss_pred CCceEEEcCCCCccccc
Q 031293 30 GTKLCLVDLPGYGFAYA 46 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~ 46 (162)
+.++..+|.||+|....
T Consensus 39 g~~v~~~D~~G~G~S~~ 55 (267)
T 3sty_A 39 GHNVTALDLGASGINPK 55 (267)
T ss_dssp TCEEEEECCTTSTTCSC
T ss_pred CCeEEEeccccCCCCCC
Confidence 35689999999998754
No 303
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A*
Probab=26.17 E-value=1.3e+02 Score=19.93 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.0
Q ss_pred CCceEEEcCCCCcccc
Q 031293 30 GTKLCLVDLPGYGFAY 45 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~ 45 (162)
+.++..+|.||+|...
T Consensus 31 g~rVia~Dl~G~G~S~ 46 (273)
T 1xkl_A 31 GHKVTALDLAASGTDL 46 (273)
T ss_dssp TCEEEECCCTTSTTCC
T ss_pred CCEEEEecCCCCCCCc
Confidence 3568899999999874
No 304
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Probab=26.05 E-value=1.4e+02 Score=19.59 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.1
Q ss_pred CCceEEEcCCCCcccc
Q 031293 30 GTKLCLVDLPGYGFAY 45 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~ 45 (162)
+.++..+|.||+|...
T Consensus 37 g~~via~Dl~G~G~S~ 52 (264)
T 2wfl_A 37 GHKVTAVDLSAAGINP 52 (264)
T ss_dssp TCEEEEECCTTSTTCS
T ss_pred CCEEEEeecCCCCCCC
Confidence 3568899999999874
No 305
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=25.72 E-value=43 Score=20.08 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=12.5
Q ss_pred HHHHHhCCceEEEEeccC
Q 031293 90 SLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 90 ~~l~~~~~~~ivv~nK~D 107 (162)
......++|++.+.+|.+
T Consensus 65 ~lc~~~~Vp~~~v~sk~e 82 (124)
T 2fc3_A 65 LLCDEKKIPYVYVPSKKR 82 (124)
T ss_dssp HHHHHTTCCEEEESCHHH
T ss_pred HHHHHcCCCEEEECCHHH
Confidence 445567899888876653
No 306
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.74 E-value=45 Score=19.15 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=13.6
Q ss_pred HHHHHHHhCCceEEEEeccC
Q 031293 88 LISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~D 107 (162)
+.......++|++.+.+|.+
T Consensus 53 i~~~c~~~~vp~~~~~s~~e 72 (101)
T 3v7q_A 53 VTDKCNYYKVPYKKVESRAV 72 (101)
T ss_dssp HHHHHHHTTCCEEEESCHHH
T ss_pred hcccccccCCCeeeechHHH
Confidence 33445667899998877654
No 307
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A
Probab=23.65 E-value=1.4e+02 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=13.2
Q ss_pred CCceEEEcCCCCccccc
Q 031293 30 GTKLCLVDLPGYGFAYA 46 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~ 46 (162)
+.++..+|.||+|....
T Consensus 54 ~~~vi~~Dl~G~G~S~~ 70 (282)
T 1iup_A 54 FYRVIAPDMVGFGFTDR 70 (282)
T ss_dssp TSEEEEECCTTSTTSCC
T ss_pred CCEEEEECCCCCCCCCC
Confidence 34688999999998743
No 308
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.44 E-value=98 Score=17.55 Aligned_cols=19 Identities=11% Similarity=-0.115 Sum_probs=13.1
Q ss_pred HHHHHhCCceEEE-EeccCC
Q 031293 90 SLMERSQTKYQVV-LTKTDT 108 (162)
Q Consensus 90 ~~l~~~~~~~ivv-~nK~Dl 108 (162)
......++|++.+ .+|.+|
T Consensus 51 ~~c~~~~ip~~~~~~s~~eL 70 (99)
T 3j21_Z 51 YYAKLSDIPVYEFEGTSVEL 70 (99)
T ss_dssp HHHHHTTCCEEEECCCSCGG
T ss_pred HHHHHcCCCEEEeCCCHHHH
Confidence 4456678997655 888765
No 309
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=23.42 E-value=1.2e+02 Score=20.28 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=18.7
Q ss_pred eEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 71 VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 71 vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
+++|+|++. +...+.+....++|+|-+++
T Consensus 118 lliV~Dp~~-----e~~ai~EA~~l~IPvIalvD 146 (208)
T 1vi6_A 118 VVFVNDPAI-----DKQAVSEATAVGIPVVALCD 146 (208)
T ss_dssp EEEESCTTT-----THHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCc-----chhHHHHHHHhCCCEEEEeC
Confidence 455667653 34556667777888777754
No 310
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=23.07 E-value=1.2e+02 Score=19.96 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=26.1
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
...+++.||+-.+.......+.+.++....|++.+++
T Consensus 57 ~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~ 93 (208)
T 2cby_A 57 SKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAM 93 (208)
T ss_dssp SSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEC
Confidence 4677777787666555566777888887888766653
No 311
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A*
Probab=22.34 E-value=1.4e+02 Score=20.22 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.0
Q ss_pred CceEEEcCCCCccccc
Q 031293 31 TKLCLVDLPGYGFAYA 46 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~~ 46 (162)
.++..+|.||+|....
T Consensus 59 ~~via~Dl~G~G~S~~ 74 (328)
T 2cjp_A 59 YRAVAPDLRGYGDTTG 74 (328)
T ss_dssp CEEEEECCTTSTTCBC
T ss_pred cEEEEECCCCCCCCCC
Confidence 4688899999998753
No 312
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=22.06 E-value=51 Score=18.89 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=13.5
Q ss_pred HHHHHHHhCCceEEEEeccC
Q 031293 88 LISLMERSQTKYQVVLTKTD 107 (162)
Q Consensus 88 ~~~~l~~~~~~~ivv~nK~D 107 (162)
+.......++|++.+.+|.+
T Consensus 52 i~~~c~~~~ip~~~~~s~~e 71 (101)
T 3on1_A 52 LLDKCGSYQIPVKVVGNRQM 71 (101)
T ss_dssp HHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHcCCCEEEeCCHHH
Confidence 33445667899988866643
No 313
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=21.82 E-value=1.3e+02 Score=19.96 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=26.0
Q ss_pred cceeEEEeecCCCCCccHHHHHHHHHHhCCceEEEEe
Q 031293 68 LKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLT 104 (162)
Q Consensus 68 ~~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~ivv~n 104 (162)
...+++.+++-.+.......+++.++....|++.+++
T Consensus 75 ~k~I~l~InSPGG~v~ag~~I~~~i~~~~~pV~t~v~ 111 (218)
T 1y7o_A 75 TKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVM 111 (218)
T ss_dssp TSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEE
T ss_pred CCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 3566667787655545556677888888889877775
No 314
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica}
Probab=21.75 E-value=80 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=12.8
Q ss_pred CceEEEcCCCCcccc
Q 031293 31 TKLCLVDLPGYGFAY 45 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~ 45 (162)
.++..+|.||||.+.
T Consensus 74 ~rvia~Dl~G~G~S~ 88 (297)
T 2xt0_A 74 GRVVAPDLFGFGRSD 88 (297)
T ss_dssp CEEEEECCTTSTTSC
T ss_pred cEEEEeCCCCCCCCC
Confidence 578899999999874
No 315
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0
Probab=21.27 E-value=1.2e+02 Score=20.16 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=12.5
Q ss_pred CceEEEcCCCCcccc
Q 031293 31 TKLCLVDLPGYGFAY 45 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~ 45 (162)
.++..+|.||+|...
T Consensus 55 ~~vi~~D~~G~G~S~ 69 (281)
T 3fob_A 55 YRVITYDRRGFGKSS 69 (281)
T ss_dssp EEEEEECCTTSTTSC
T ss_pred CEEEEeCCCCCCCCC
Confidence 368899999999874
No 316
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=21.24 E-value=1.6e+02 Score=23.64 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=25.2
Q ss_pred CcccceeEEEeecC--CC-----------CCccHHHHHHHHH----HhCCceEEEEe
Q 031293 65 RVSLKRVCLLIDTK--WG-----------VKPRDHELISLME----RSQTKYQVVLT 104 (162)
Q Consensus 65 ~~~~~~vi~vid~~--~~-----------~~~~~~~~~~~l~----~~~~~~ivv~n 104 (162)
...+|.+|+++... ++ +.....++++.+. ..+.|+|+|++
T Consensus 442 a~~aDvvIv~vg~~~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~~~~~vVVVl~ 498 (721)
T 2x41_A 442 AKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498 (721)
T ss_dssp HHHCSEEEEEEECCCBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HhcCCEEEEEEeccccccccccCCCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 35579999988532 11 2223455667776 67888887774
No 317
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=21.22 E-value=1.9e+02 Score=19.18 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=23.0
Q ss_pred ceeEEEeecCCCCCccHHHHHHHHHHhCCce-EEEEeccCC
Q 031293 69 KRVCLLIDTKWGVKPRDHELISLMERSQTKY-QVVLTKTDT 108 (162)
Q Consensus 69 ~~vi~vid~~~~~~~~~~~~~~~l~~~~~~~-ivv~nK~Dl 108 (162)
.-+++|.++..+-........+.+...+.++ =+|+|+.+-
T Consensus 141 ~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~ 181 (228)
T 3of5_A 141 IPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDS 181 (228)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCT
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCC
Confidence 3467777876432222222334555567774 678899864
No 318
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli}
Probab=20.19 E-value=1.7e+02 Score=19.34 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.1
Q ss_pred CceEEEcCCCCcccc
Q 031293 31 TKLCLVDLPGYGFAY 45 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~ 45 (162)
.++..+|.||+|...
T Consensus 67 ~~vi~~D~~G~G~S~ 81 (289)
T 1u2e_A 67 YRVILLDCPGWGKSD 81 (289)
T ss_dssp CEEEEECCTTSTTSC
T ss_pred CeEEEEcCCCCCCCC
Confidence 357889999999874
No 319
>1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35
Probab=20.19 E-value=1.5e+02 Score=19.41 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=12.8
Q ss_pred CCceEEEcCCCCcccc
Q 031293 30 GTKLCLVDLPGYGFAY 45 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~ 45 (162)
+.++..+|.||+|...
T Consensus 43 ~~~vi~~Dl~GhG~S~ 58 (264)
T 1r3d_A 43 QCAALTLDLPGHGTNP 58 (264)
T ss_dssp SCEEEEECCTTCSSCC
T ss_pred CceEEEecCCCCCCCC
Confidence 3468899999999864
No 320
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus}
Probab=20.15 E-value=1.7e+02 Score=19.47 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.5
Q ss_pred CCceEEEcCCCCccccc
Q 031293 30 GTKLCLVDLPGYGFAYA 46 (162)
Q Consensus 30 ~~~~~ivDtpG~~~~~~ 46 (162)
+.++..+|.||+|....
T Consensus 52 ~~~vi~~Dl~G~G~S~~ 68 (286)
T 2yys_A 52 GFRVVYFDQRGSGRSLE 68 (286)
T ss_dssp TSEEEEECCTTSTTSCC
T ss_pred CCEEEEECCCCCCCCCC
Confidence 44688999999998754
No 321
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Probab=20.13 E-value=1.7e+02 Score=19.45 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=12.3
Q ss_pred CceEEEcCCCCcccc
Q 031293 31 TKLCLVDLPGYGFAY 45 (162)
Q Consensus 31 ~~~~ivDtpG~~~~~ 45 (162)
.++..+|.||+|...
T Consensus 64 ~~vi~~D~~G~G~S~ 78 (286)
T 2puj_A 64 YRVILKDSPGFNKSD 78 (286)
T ss_dssp CEEEEECCTTSTTSC
T ss_pred CEEEEECCCCCCCCC
Confidence 457899999999874
Done!