RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031293
(162 letters)
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 148 bits (375), Expect = 7e-46
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
LN LT Q + RTS PG TQ IN F++ LVDLPGYG+A EE+K W+ + E
Sbjct: 42 ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 101
Query: 61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
Y+ R SL+ + +L+D + +K D ++I S V+LTK D + +
Sbjct: 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 161
Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
+ E++ A N V V SS G+ LR L
Sbjct: 162 VREAVLAFNGDV-QVETFSSLKKQGVDKLRQKLDTW 196
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 145 bits (369), Expect = 3e-45
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
+N+L + + RTS KPG TQT+NF+ + +L VD+PGYGFA + ++AW +++
Sbjct: 39 FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98
Query: 61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
Y++TR LK V ++D + D ++ ++ V+ TK D + + A
Sbjct: 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKV 158
Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
+ ++L + +++ SS++ G + K+
Sbjct: 159 VRQTLNIDPE--DELILFSSETKKGKDEAWGAIKKM 192
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 142 bits (360), Expect = 8e-44
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
+LNAL + + S PG T++INF+ + +K VDLPGYG+A ++ + W+ LV++
Sbjct: 39 LLNALFNR-KIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97
Query: 61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
Y R SL+ V LL+D + + D ++ M+ + +VLTK D V + A++ +
Sbjct: 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEE 157
Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
+ ++ SS +G GI L ++S +
Sbjct: 158 HRKVFSKYGEY--TIIPTSSVTGEGISELLDLISTL 191
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 140 bits (354), Expect = 2e-42
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 8/166 (4%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLG----TKLCLVDLPGYGFAYAKEEVKDAWEE 56
+N L Q + S PG TQ IN+F +G LVDLPGYG+A K WE+
Sbjct: 45 AINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104
Query: 57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 116
L+ Y+ TR L + L++D + + D +I + +LTK D + +
Sbjct: 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESIN 164
Query: 117 RAMQIEESLKANNSLVQP----VMMVSSKSGAGIRSLRTVLSKIAR 158
++SL A V + S+ G+ ++ R
Sbjct: 165 ALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 95.5 bits (238), Expect = 1e-25
Identities = 30/168 (17%), Positives = 68/168 (40%), Gaps = 17/168 (10%)
Query: 2 LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKE-EVKDAWEELVKE 60
+ LT + VR +PG+T+ I + ++D+PG+GF EV++ ++ +
Sbjct: 18 IYRLTGKK--VRRGKRPGVTRKIIEIEWKNHK-IIDMPGFGFMMGLPKEVQERIKDEIVH 74
Query: 61 YVSTRV-SLKRVCLLIDTK-----------WGVKPRDHELISLMERSQTKYQVVLTKTDT 108
++ ++ L++D K G P D E + V + K D
Sbjct: 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK 134
Query: 109 VFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
+ + + + + + + + + +S+K G I L+ + ++
Sbjct: 135 IKNVQEVINFLAEKFEVPLSE-IDKVFIPISAKFGDNIERLKNRIFEV 181
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 63.2 bits (153), Expect = 1e-12
Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 30/174 (17%)
Query: 2 LNALTRQWG---VVRTSDKPGLTQTINFFKLG--TKLCLVDLPGYGFAYAKEEVKDAWEE 56
+N L + +T + +K + DLPG G +
Sbjct: 86 INTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------- 138
Query: 57 LVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVAR 116
Y+ + +I + K D ++ + + ++ V TK D+ +
Sbjct: 139 ---TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195
Query: 117 RAMQ-------------IEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSK 155
+ + N P+ ++S+K L L
Sbjct: 196 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 40.8 bits (96), Expect = 6e-05
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 28/164 (17%)
Query: 2 LNALTRQWGVVRTSDKPGLT-----QTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEE 56
+NAL Q V SD G T +++ +G + LVD PG ++V +
Sbjct: 51 MNALVGQ-NVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGL------DDVGELGRL 102
Query: 57 LVKEYVSTRVSLKRV---CLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPID 113
V+ R R L+ D+ P + ++++L + + + VV+ K D +
Sbjct: 103 RVE---KARRVFYRADCGILVTDSAPT--PYEDDVVNLFKEMEIPFVVVVNKIDVLGE-- 155
Query: 114 VARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
+A +++ ++ V++VS+ G + +S+I
Sbjct: 156 ---KAEELKGLYESRYEA--KVLLVSALQKKGFDDIGKTISEIL 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 38.6 bits (89), Expect = 3e-04
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 24 INFFKLGTKLCLVDLPGYGFA----YAKEEVKDAWEELVKEYVSTRVSLKR--------- 70
I + +L +VD PGYG A + + +E + Y+ L R
Sbjct: 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVH 128
Query: 71 VCLLIDTKWGVKPRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESLKAN 128
C + +G + + ++ M+ K + V+ K DT+ + R +I + ++ +
Sbjct: 129 CCFYFISPFGHGLKPLD-VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEH 187
Query: 129 NSLV 132
N +
Sbjct: 188 NIKI 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 38.7 bits (89), Expect = 4e-04
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 21 TQTINFFKLGTKLCLVDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR------ 70
T I + +L +VD PGYG A + +E + Y+ L R
Sbjct: 85 TVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDN 144
Query: 71 ---VCLLIDTKWG--VKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESL 125
C + +G +KP D + + ++ V+ K DT+ + R +I + +
Sbjct: 145 RVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEI 203
Query: 126 KANNSLV 132
+ +N +
Sbjct: 204 EEHNIKI 210
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 33 LCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLID-TKWGVKPRDHELISL 91
+ ++D PG + + V + + RV L + LL D K + E I
Sbjct: 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDL--IILLFDAHKLEISDEFSEAIGA 213
Query: 92 MERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 126
+ + K +VVL K D V + R + +L
Sbjct: 214 LRGHEDKIRVVLNKADMVETQQLMRVYGALMWALG 248
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 36.6 bits (85), Expect = 0.002
Identities = 19/88 (21%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 71 VCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNS 130
+++D K G K + E + +++ VV+TK+D ++ R M ++ L++ ++
Sbjct: 100 ALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN 159
Query: 131 LVQ-PVMMVSSKSGAGIRSLRTVLSKIA 157
L ++ +S+K+G G+ L+ ++
Sbjct: 160 LKNSSIIPISAKTGFGVDELKNLIITTL 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.004
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 30/142 (21%)
Query: 39 PGYGF-AYAKEEV-KDAWEELVKEYVSTR--VSL--------KRVCLLIDTKWGVKPRDH 86
G G Y + +D W + S+ + + + G + R++
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 87 ELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQI-----EESLKA-NNSLVQPVMMVSS 140
+++ + ++ KT+ +F ++ + + L A + QP + +
Sbjct: 1688 -YSAMIFETIVDGKL---KTEKIFK-EINEHSTSYTFRSEKGLLSATQFT--QPALTLME 1740
Query: 141 KSGAGIRSLR--TVLSKIARFA 160
K A L+ ++ A FA
Sbjct: 1741 K--AAFEDLKSKGLIPADATFA 1760
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 35.5 bits (82), Expect = 0.004
Identities = 6/56 (10%), Positives = 18/56 (32%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
+ K D ++ + + + N S+ +G G+ + ++
Sbjct: 147 IGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 35.0 bits (81), Expect = 0.006
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 2 LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 40
+N L ++ + +T D+PG+T + + K+G +L L+D PG
Sbjct: 137 INRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 35.2 bits (82), Expect = 0.006
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 70 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 129
V ++D + D +++ ++ +Y VV+ K D V I+ EE +K
Sbjct: 326 IVLFVLDASSPLDEEDRKILERIK--NKRYLVVINKVDVVEKIN--------EEEIKNKL 375
Query: 130 SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
+ ++ +S+ G G+ L + +
Sbjct: 376 GTDRHMVKISALKGEGLEKLEESIYRET 403
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 33.4 bits (77), Expect = 0.020
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 2 LNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPG 40
+N L + +PG+T+ I +F L + ++D PG
Sbjct: 116 INKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.5 bits (75), Expect = 0.042
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 70 RVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANN 129
V L ID G D E+ ++ +V+ K D V + +
Sbjct: 306 LVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITSLEYPENIT----- 358
Query: 130 SLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
++ ++ GI SL T + +I
Sbjct: 359 ----QIVHTAAAQKQGIDSLETAILEIV 382
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.9 bits (69), Expect = 0.13
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 16/131 (12%)
Query: 21 TQTINFFKLGTKLCLVDLPGYGFAYAKE----EVKDAWEELVKEYVSTRVSLKR------ 70
I + L +VD PG+G A V D + ++Y++ + R
Sbjct: 55 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDN 114
Query: 71 ---VCLLIDTKWGVKPRDHELISLMERSQTKYQV--VLTKTDTVFPIDVARRAMQIEESL 125
CL G + + I M+R K + ++ K DT+ P + + QI + +
Sbjct: 115 RVQCCLYFIAPSGHGLKPLD-IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEI 173
Query: 126 KANNSLVQPVM 136
+ + +
Sbjct: 174 QEHKIKIYEFP 184
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 31.0 bits (71), Expect = 0.14
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 70 RVCLLIDTKWGVKPRDHELIS--LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKA 127
+ L+D + I K+ V K D D RA+
Sbjct: 315 LILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG--- 371
Query: 128 NNSLVQPVMMVSSKSGAGIRSLRTVLSKIA 157
V+ +S+ +G GI +L+ + +
Sbjct: 372 -----TEVIGISALNGDGIDTLKQHMGDLV 396
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.1 bits (71), Expect = 0.15
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS-KIARF 159
+VL K D + + + E + ++ V+MVSS + G++ L L+ +I+ F
Sbjct: 165 IVLNKIDLLDDEGMD----FVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIF 220
Query: 160 A 160
A
Sbjct: 221 A 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 30.2 bits (69), Expect = 0.18
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 15/93 (16%)
Query: 70 RVCLLIDTKWGVKPRDHELISLMER---SQTKYQVVLTKTDTVFPIDVARRAMQIEESLK 126
RV ++D E+ ++ VV K D E+L
Sbjct: 86 RVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD------------ITGETLG 133
Query: 127 ANNSLVQPVMMVSSKSGAGIRSLRTVLSKIARF 159
+ ++ +S+++G G+ LR L + F
Sbjct: 134 MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.9 bits (67), Expect = 0.31
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 2 LNALT-----RQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGY 41
+N + V+ TS PG T + L + L D PG
Sbjct: 177 INRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.1 bits (66), Expect = 0.58
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 91 LMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 149
L ER Q +V K D + A +E L + PV +S+ + G+R L
Sbjct: 272 LTERPQI---IVANKMDMP---EAAENLEAFKEKLTDD----YPVFPISAVTREGLREL 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.65
Identities = 7/28 (25%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 116 RRAMQ-IEESLK--ANNSLVQPVMMVSS 140
++A++ ++ SLK A++S P + + +
Sbjct: 19 KQALKKLQASLKLYADDS--APALAIKA 44
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 28.8 bits (64), Expect = 0.80
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 2 LNALTRQWG----VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 55
+N + + V+ TS PG T + L + L D PG + DA +
Sbjct: 179 INRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARD 236
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 28.7 bits (64), Expect = 0.80
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
VV+ K D ++ R +E+ +K + +S+ G GI ++ + K
Sbjct: 285 VVINKIDVADEENIKR----LEKFVKEKG---LNPIKISALKGTGIDLVKEEIIKT 333
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.0 bits (63), Expect = 1.1
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 146
+V+ K D + + M ++ + N V+++S K+ G
Sbjct: 169 IVINKIDLADAVGADIKKM-ENDAKRINPDA--EVVLLSLKTMEGF 211
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158
V L K D + D+ ++ +E+ K S + V+ +S+ + LR + ++A
Sbjct: 297 VTLNKIDKING-DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.0 bits (63), Expect = 1.2
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGI 146
+V+ K + M ++ N ++ + K+G G
Sbjct: 159 IVINKVALAEAVGADVEKM-KADAKLINPRA--KIIEMDLKTGKGF 201
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase,
asparaginase, hydrolase; 1.90A {Homo sapiens} PDB:
2a8i_A 2a8m_A 2a8l_A
Length = 420
Score = 28.4 bits (63), Expect = 1.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 111 PIDVARRAMQIEESLKANNSLVQPVMMV 138
P+ VA R + + K + + P +V
Sbjct: 139 PVSVANRLLCEGQKGKLSAGRIPPCFLV 166
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 28.0 bits (63), Expect = 1.3
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 18/58 (31%)
Query: 3 NALT--RQ----WGVVRTSDKPGLT--QTINFFKLGTKLCLVDLPG-YGF-AYAKEEV 50
N +T Q W PG+T + K L + DLPG Y Y+ E
Sbjct: 21 NLITGHNQRVGNW--------PGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAK 70
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 27.4 bits (61), Expect = 2.5
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 101 VVLTKTDTVFPIDVARRAM-QIEESLK----ANNSLVQPVMMVSSKSGAGIRSL 149
+ + K D A A + +L + + PV+ +S G G+ SL
Sbjct: 198 IAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSL 251
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 27.1 bits (61), Expect = 3.1
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 90 SLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSL 149
+L+ R V L K D + + ++L V+ VS+ +GAG+ +L
Sbjct: 266 ALLRRPSL---VALNKVDLLE----EEAVKALADALAREG---LAVLPVSALTGAGLPAL 315
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa
transferase; 2.20A {Leptospira interrogans} SCOP:
c.69.1.40
Length = 366
Score = 26.0 bits (58), Expect = 5.9
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 84 RDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQIEESLKANNSLVQPVMMVS 139
+ EL + + + ++ VV +D ++P ++ +I +SL+A + V V + S
Sbjct: 288 KGKELTAALSNATCRFLVVSYSSDWLYP---PAQSREIVKSLEAADKRVFYVELQS 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 25.6 bits (56), Expect = 8.9
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 101 VVLTKTDTVFPIDVARRAMQIEESLK----ANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
VV+ K D + A ++ +++ PV+ +S+ G G+ L + +
Sbjct: 222 VVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281
Query: 157 ARFAK 161
+
Sbjct: 282 RQVLT 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.380
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,306,354
Number of extensions: 127611
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 48
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)