RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031293
(162 letters)
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 53.2 bits (126), Expect = 7e-10
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
+N+L + + RTS KPG TQT+NF+ + +L VD+PGYGFA + ++AW +++
Sbjct: 39 FINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET 98
Query: 61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
Y++TR LK V ++D + D ++ ++ V+ TK D + + A
Sbjct: 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKV 158
Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKI 156
+ ++L + +++ SS++ G + K+
Sbjct: 159 VRQTLNIDPE--DELILFSSETKKGKDEAWGAIKKM 192
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 52.5 bits (124), Expect = 1e-09
Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
LN LT Q + RTS PG TQ IN F++ LVDLPGYG+A EE+K W+ + E
Sbjct: 32 ALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 91
Query: 61 YVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRAMQ 120
Y+ R SL+ + +L+D + +K D ++I S V+LTK D + +
Sbjct: 92 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM 151
Query: 121 IEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLS 154
+ E++ A N V V SS G+ LR L
Sbjct: 152 VREAVLAFNGDV-QVETFSSLKKQGVDKLRQKLD 184
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 43.2 bits (101), Expect = 4e-06
Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 30/176 (17%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTI-----NFFKLGTKLCLVDLPGYGFAYAKEEVKDAWE 55
+N L + K G+ + + DLPG G +
Sbjct: 72 FINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPD------ 125
Query: 56 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 115
Y+ + +I + K D ++ + + ++ V TK D+ +
Sbjct: 126 ----TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEAD 181
Query: 116 RRA-------------MQIEESLKANNSLVQPVMMVSSK--SGAGIRSLRTVLSKI 156
+ + + N P+ ++S+K L L
Sbjct: 182 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 237
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 39.2 bits (90), Expect = 5e-05
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 18/163 (11%)
Query: 2 LNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEE--VKDAWE 55
L A+TR + + P T + N + L D+PG ++ + +
Sbjct: 18 LAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR 75
Query: 56 ELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVA 115
+ + V V L + K +L+ R K D +
Sbjct: 76 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL---NKVDLLEE---- 128
Query: 116 RRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSKIAR 158
++ A V+ VS+ +GAG+ +L+ L + R
Sbjct: 129 ---EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 36.5 bits (83), Expect = 5e-04
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 2 LNALTRQWGVVRTSDKPGLTQTIN----FFKLGTKLCLVDLPGYGFAYAKEEVKDAWEEL 57
L+ ++ + +D T N G + DLPG + +
Sbjct: 18 LSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPG--LIEGAHQGVGLGHQF 73
Query: 58 VKEYVSTRVSLKRVCLLID-----TKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 112
++ TRV + + + + + ++ +V K D
Sbjct: 74 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP--- 130
Query: 113 DVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
A + E+ K + PV +S+ + G+R L ++
Sbjct: 131 ----EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 169
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.5 bits (70), Expect = 0.036
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 30/118 (25%)
Query: 65 RVSLKRVCLLIDTKWGVKPRD-----HELISLMERSQTKYQVVLTKTDTVFPIDVARRAM 119
+ V + D + KP D + + R L K D + + R
Sbjct: 121 NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE-EEKERHR 179
Query: 120 QIEESLKANNSLVQ------------------------PVMMVSSKSGAGIRSLRTVL 153
+ E + + ++ V+ +S+K+ G L T+
Sbjct: 180 KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 30.7 bits (68), Expect = 0.044
Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 2 LNALTRQWGVVRTSDKPGLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELV 58
LN L + +D PG T+ + ++ G +VD G + E D E L
Sbjct: 17 LNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-----RSETNDLVERLG 70
Query: 59 KEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPIDVARRA 118
E T +++ +++ P D E ++ER + K +V+ V
Sbjct: 71 IE--RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE---KINE 125
Query: 119 MQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
+I+ L + + ++ +S+ G G+ L + +
Sbjct: 126 EEIKNKLGTD----RHMVKISALKGEGLEKLEESIYR 158
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 28.6 bits (63), Expect = 0.32
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 11 VVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEE 49
+ +T D+PG+T + + K+G +L L+D PG + ++E
Sbjct: 137 IAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDE 175
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.2 bits (56), Expect = 2.0
Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)
Query: 1 MLNALTRQWGVVRTSDKPGLTQTINFFKLGTKLCLVDLPGYGFAYAKEEVK--------D 52
+L+ + R + G+TQ I ++ + + ++ E
Sbjct: 21 LLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTP 78
Query: 53 AWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVFPI 112
E L++D G KP+ E ++++ +T + V K D +
Sbjct: 79 GHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG- 137
Query: 113 DVARRAMQIEESLKANNSLVQ----------------------------------PVMMV 138
E+ + VQ ++ +
Sbjct: 138 WRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPI 197
Query: 139 SSKSGAGIRSLRTVLSKIAR 158
S+ +G GI L T+L +A+
Sbjct: 198 SAITGEGIPELLTMLMGLAQ 217
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 26.1 bits (57), Expect = 2.0
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 18/116 (15%)
Query: 19 GLTQTINFFKL---GTKLCLVDLPGYGFAYAKEEVKDAWEELVKEYVSTRVSLKRVCLLI 75
G+T + VD PG+ + +K ++ + L++
Sbjct: 52 GITINTAHVEYETAKRHYSHVDCPGH-------------ADYIKNMITGAAQMDGAILVV 98
Query: 76 DTKWGVKPRDHELISLMERSQTKYQV-VLTKTDTVFPIDVARRA-MQIEESLKANN 129
G P+ E I L + Y V + K D V ++ M++ + L
Sbjct: 99 SAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 154
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 221
Score = 25.7 bits (55), Expect = 3.0
Identities = 11/72 (15%), Positives = 23/72 (31%)
Query: 51 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISLMERSQTKYQVVLTKTDTVF 110
+D ++ V E + + ++ V + P L E K L V
Sbjct: 26 RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYSRVR 85
Query: 111 PIDVARRAMQIE 122
+ A + ++
Sbjct: 86 NLHAAVKEVKTR 97
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.1 bits (53), Expect = 3.4
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 110 FPIDVARRAMQIEESLKANNSLVQPVMMVSSKSGAGIRSLRTVLSK 155
V +A E+L + ++ +S+++G G+ LR L +
Sbjct: 114 PITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ 159
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate
deaminase/isomerase NagB {Escherichia coli [TaxId:
562]}
Length = 266
Score = 25.1 bits (54), Expect = 5.0
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 51 KDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHE 87
++ LV+ + + +VS K V ++ P++H
Sbjct: 46 MTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHP 82
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor
eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 24.8 bits (54), Expect = 5.6
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 44 AYAKEEVKDAWEELVKEYVSTRVSLKRVCLLIDTKWGVKPRDHELISL-----MERSQ 96
A ++EE++ + +++EY+ +K + + + +ERS
Sbjct: 3 ALSEEELEKKSKAIIEEYLHLN-DMKEAVQCVQ-ELASPSLLFIFVRHGVESTLERSA 58
>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622
{Thermotoga maritima [TaxId: 2336]}
Length = 130
Score = 24.0 bits (52), Expect = 7.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 41 YGFAYAKEEVKDAWEELVKEY 61
+ + Y EE K W++L
Sbjct: 50 FLYVYKGEEAKKIWKKLNGRA 70
>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
(RecC), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 304
Score = 24.6 bits (53), Expect = 7.2
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 20 LTQTINFFKLGTKLCLVDLPGYGFAYAKEEVKDAWEELVKE 60
L+Q I ++ G L+ LP G A+ K + ++ +
Sbjct: 203 LSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 243
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.380
Gapped
Lambda K H
0.267 0.0391 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 544,625
Number of extensions: 22847
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 17
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.6 bits)