Query 031294
Match_columns 162
No_of_seqs 141 out of 1096
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 12:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0509 GcvH Glycine cleavage 100.0 1.4E-47 3E-52 291.0 12.5 126 32-157 3-130 (131)
2 PRK01202 glycine cleavage syst 100.0 6.4E-45 1.4E-49 276.1 13.5 125 32-156 2-126 (127)
3 TIGR00527 gcvH glycine cleavag 100.0 5.1E-45 1.1E-49 276.7 12.5 125 33-157 1-126 (127)
4 PRK13380 glycine cleavage syst 100.0 1.6E-44 3.5E-49 279.4 13.7 129 32-160 7-137 (144)
5 KOG3373 Glycine cleavage syste 100.0 2.9E-43 6.4E-48 274.4 10.7 156 4-159 13-172 (172)
6 PF01597 GCV_H: Glycine cleava 100.0 1.4E-42 3.1E-47 261.5 12.4 121 38-158 1-122 (122)
7 TIGR03077 not_gcvH glycine cle 100.0 1.7E-39 3.6E-44 241.3 11.4 107 39-145 1-108 (110)
8 PRK00624 glycine cleavage syst 100.0 1.9E-39 4.1E-44 242.4 11.7 109 38-146 2-111 (114)
9 cd06848 GCS_H Glycine cleavage 100.0 5.7E-33 1.2E-37 200.5 10.1 95 40-134 1-96 (96)
10 cd06663 Biotinyl_lipoyl_domain 99.4 2E-12 4.4E-17 87.7 6.3 72 55-134 1-73 (73)
11 KOG3266 Predicted glycine clea 98.7 1.2E-07 2.7E-12 74.3 9.4 115 42-156 33-169 (172)
12 PRK08225 acetyl-CoA carboxylas 98.4 3.7E-07 8.1E-12 61.7 4.9 56 58-114 1-56 (70)
13 COG0511 AccB Biotin carboxyl c 98.4 7.9E-07 1.7E-11 68.4 6.9 71 57-135 69-139 (140)
14 PRK05889 putative acetyl-CoA c 98.4 7.7E-07 1.7E-11 60.5 4.8 52 62-114 6-57 (71)
15 PF00364 Biotin_lipoyl: Biotin 98.1 5.8E-06 1.3E-10 56.7 4.4 40 74-113 21-60 (74)
16 PRK06748 hypothetical protein; 98.0 9.5E-06 2.1E-10 57.7 5.2 52 63-115 9-61 (83)
17 cd06850 biotinyl_domain The bi 97.9 2.5E-05 5.4E-10 50.8 5.1 49 64-113 5-53 (67)
18 PRK07051 hypothetical protein; 97.9 1.8E-05 3.9E-10 55.1 4.6 39 75-113 26-64 (80)
19 PRK06549 acetyl-CoA carboxylas 97.8 3.3E-05 7.1E-10 59.1 5.2 53 62-115 65-117 (130)
20 PRK14875 acetoin dehydrogenase 97.8 3.1E-05 6.8E-10 65.2 5.2 63 67-137 17-79 (371)
21 PRK06302 acetyl-CoA carboxylas 97.8 3.5E-05 7.6E-10 60.3 4.7 50 63-112 84-139 (155)
22 TIGR00531 BCCP acetyl-CoA carb 97.8 3.5E-05 7.5E-10 60.4 4.6 51 62-112 84-140 (156)
23 PLN02983 biotin carboxyl carri 97.6 9E-05 2E-09 62.9 5.0 39 75-113 220-258 (274)
24 PRK05641 putative acetyl-CoA c 97.6 9.7E-05 2.1E-09 57.9 4.9 52 62-114 88-139 (153)
25 PTZ00144 dihydrolipoamide succ 97.4 0.0002 4.3E-09 64.3 5.2 47 67-114 59-105 (418)
26 PLN02226 2-oxoglutarate dehydr 97.4 0.00022 4.8E-09 64.7 5.2 70 43-113 77-151 (463)
27 PRK14042 pyruvate carboxylase 97.4 0.00028 6.1E-09 65.8 5.2 50 63-113 530-579 (596)
28 TIGR01108 oadA oxaloacetate de 97.3 0.00029 6.4E-09 65.5 4.9 49 64-113 523-571 (582)
29 PRK14040 oxaloacetate decarbox 97.3 0.00035 7.5E-09 65.2 5.0 49 65-114 531-579 (593)
30 COG0508 AceF Pyruvate/2-oxoglu 97.2 0.00042 9.1E-09 61.8 4.7 49 67-116 17-65 (404)
31 COG4770 Acetyl/propionyl-CoA c 97.2 0.00071 1.5E-08 62.7 6.2 76 40-116 543-632 (645)
32 TIGR02712 urea_carbox urea car 97.1 0.00052 1.1E-08 68.5 4.7 51 62-113 1136-1186(1201)
33 TIGR01235 pyruv_carbox pyruvat 97.1 0.00074 1.6E-08 67.2 5.4 51 63-114 1079-1129(1143)
34 COG1038 PycA Pyruvate carboxyl 97.1 0.00049 1.1E-08 66.2 3.8 56 63-122 1084-1139(1149)
35 PRK09282 pyruvate carboxylase 97.0 0.00089 1.9E-08 62.4 5.0 49 65-114 529-577 (592)
36 PRK05704 dihydrolipoamide succ 97.0 0.0011 2.5E-08 59.1 5.4 47 67-114 17-63 (407)
37 PRK12999 pyruvate carboxylase; 97.0 0.00095 2.1E-08 66.4 4.9 50 63-113 1081-1130(1146)
38 TIGR01347 sucB 2-oxoglutarate 96.8 0.0021 4.4E-08 57.4 5.4 47 67-114 15-61 (403)
39 cd06849 lipoyl_domain Lipoyl d 96.7 0.0048 1E-07 39.2 5.3 47 67-114 15-61 (74)
40 PRK11854 aceF pyruvate dehydro 96.7 0.0028 6.2E-08 59.4 5.3 45 67-112 15-59 (633)
41 TIGR02927 SucB_Actino 2-oxoglu 96.6 0.0028 6.1E-08 59.1 5.0 48 67-115 150-197 (590)
42 PF13375 RnfC_N: RnfC Barrel s 96.6 0.0029 6.3E-08 46.3 3.9 62 52-119 28-89 (101)
43 PRK11854 aceF pyruvate dehydro 96.6 0.003 6.5E-08 59.2 4.9 39 75-113 226-264 (633)
44 PF09891 DUF2118: Uncharacteri 96.4 0.0047 1E-07 48.4 4.4 47 67-114 89-136 (150)
45 TIGR01348 PDHac_trf_long pyruv 96.4 0.0043 9.2E-08 57.3 4.7 40 75-114 137-176 (546)
46 KOG0559 Dihydrolipoamide succi 96.4 0.0019 4.1E-08 57.2 2.1 85 45-137 63-149 (457)
47 PRK11855 dihydrolipoamide acet 96.3 0.0063 1.4E-07 56.1 5.2 39 75-113 140-178 (547)
48 PRK11855 dihydrolipoamide acet 96.2 0.0071 1.5E-07 55.7 5.2 47 67-114 16-62 (547)
49 PLN02528 2-oxoisovalerate dehy 96.1 0.009 2E-07 53.5 5.1 44 68-112 14-57 (416)
50 TIGR01348 PDHac_trf_long pyruv 96.1 0.0095 2.1E-07 55.0 5.3 47 67-114 14-60 (546)
51 PRK11856 branched-chain alpha- 96.0 0.012 2.6E-07 52.2 5.3 42 75-116 24-65 (411)
52 TIGR01349 PDHac_trf_mito pyruv 95.7 0.015 3.4E-07 52.3 4.8 42 75-116 21-62 (435)
53 PLN02744 dihydrolipoyllysine-r 95.5 0.022 4.7E-07 52.8 4.9 42 74-115 133-174 (539)
54 TIGR02927 SucB_Actino 2-oxoglu 95.1 0.036 7.9E-07 51.7 5.2 40 75-114 24-63 (590)
55 TIGR01945 rnfC electron transp 95.0 0.036 7.8E-07 49.8 4.8 58 52-115 29-86 (435)
56 PRK05352 Na(+)-translocating N 94.8 0.03 6.5E-07 50.8 3.8 35 75-111 46-81 (448)
57 PRK11892 pyruvate dehydrogenas 94.8 0.05 1.1E-06 49.5 5.2 41 75-115 24-64 (464)
58 PF05896 NQRA: Na(+)-transloca 94.7 0.043 9.3E-07 46.5 4.2 39 75-115 45-84 (257)
59 KOG0369 Pyruvate carboxylase [ 94.5 0.046 9.9E-07 52.4 4.2 48 63-111 1111-1158(1176)
60 KOG0557 Dihydrolipoamide acety 94.4 0.052 1.1E-06 49.4 4.3 58 52-110 37-95 (470)
61 PRK05035 electron transport co 94.4 0.045 9.8E-07 52.2 4.1 39 75-115 53-92 (695)
62 PRK09783 copper/silver efflux 94.1 0.084 1.8E-06 46.9 4.9 53 64-116 129-229 (409)
63 TIGR01936 nqrA NADH:ubiquinone 93.8 0.055 1.2E-06 49.1 3.2 37 75-112 45-81 (447)
64 KOG0558 Dihydrolipoamide trans 93.4 0.089 1.9E-06 46.8 3.8 62 52-114 63-125 (474)
65 COG3608 Predicted deacylase [G 93.1 0.17 3.7E-06 44.4 4.9 54 75-138 271-327 (331)
66 cd06251 M14_ASTE_ASPA_like_1 A 93.0 0.24 5.2E-06 41.9 5.7 42 74-115 233-276 (287)
67 cd06253 M14_ASTE_ASPA_like_3 A 92.1 0.36 7.8E-06 41.3 5.6 43 73-115 242-287 (298)
68 TIGR03309 matur_yqeB selenium- 92.1 0.29 6.4E-06 41.5 4.9 34 74-111 178-211 (256)
69 COG4656 RnfC Predicted NADH:ub 91.6 0.2 4.3E-06 46.3 3.7 44 76-121 50-93 (529)
70 cd06255 M14_ASTE_ASPA_like_5 A 91.2 0.43 9.3E-06 40.6 5.1 37 75-111 246-284 (293)
71 TIGR02994 ectoine_eutE ectoine 90.7 0.57 1.2E-05 40.7 5.5 41 73-113 268-312 (325)
72 cd06252 M14_ASTE_ASPA_like_2 A 90.3 0.7 1.5E-05 39.7 5.7 52 75-135 259-314 (316)
73 TIGR01730 RND_mfp RND family e 90.2 0.31 6.8E-06 40.4 3.4 29 64-93 32-60 (322)
74 PF13533 Biotin_lipoyl_2: Biot 90.2 0.29 6.2E-06 31.0 2.4 31 64-95 8-38 (50)
75 cd06254 M14_ASTE_ASPA_like_4 A 90.0 0.76 1.6E-05 38.9 5.6 39 75-113 238-278 (288)
76 KOG0238 3-Methylcrotonyl-CoA c 89.9 0.29 6.2E-06 45.6 3.1 52 65-117 608-659 (670)
77 PRK09859 multidrug efflux syst 89.7 0.7 1.5E-05 40.3 5.4 36 57-93 60-95 (385)
78 COG4072 Uncharacterized protei 89.2 0.53 1.1E-05 36.8 3.6 39 75-113 107-146 (161)
79 PRK09578 periplasmic multidrug 88.6 0.88 1.9E-05 39.7 5.2 33 60-93 65-97 (385)
80 PRK11578 macrolide transporter 88.6 0.63 1.4E-05 40.3 4.2 30 63-93 66-95 (370)
81 COG1726 NqrA Na+-transporting 87.7 0.56 1.2E-05 41.9 3.3 36 76-113 46-82 (447)
82 PRK11556 multidrug efflux syst 87.6 1.2 2.5E-05 39.7 5.3 33 59-92 88-120 (415)
83 cd06250 M14_PaAOTO_like An unc 85.1 2.1 4.5E-05 37.7 5.5 41 74-114 303-347 (359)
84 KOG0368 Acetyl-CoA carboxylase 81.4 3.8 8.2E-05 42.8 6.2 66 66-140 693-758 (2196)
85 PF07831 PYNP_C: Pyrimidine nu 79.2 2.4 5.1E-05 29.2 3.0 24 72-95 34-58 (75)
86 TIGR00830 PTBA PTS system, glu 78.8 6.5 0.00014 29.7 5.5 51 40-93 50-104 (121)
87 cd00210 PTS_IIA_glc PTS_IIA, P 77.2 7.5 0.00016 29.4 5.4 51 40-93 50-104 (124)
88 PRK09439 PTS system glucose-sp 73.5 11 0.00024 30.0 5.7 51 40-93 72-126 (169)
89 TIGR02971 heterocyst_DevB ABC 71.1 7 0.00015 33.0 4.4 26 67-93 25-50 (327)
90 PRK08225 acetyl-CoA carboxylas 71.1 4.2 9.2E-05 26.8 2.5 29 62-91 42-70 (70)
91 PF00358 PTS_EIIA_1: phosphoen 70.3 5.4 0.00012 30.5 3.2 15 98-112 41-55 (132)
92 PF04952 AstE_AspA: Succinylgl 69.3 11 0.00025 31.2 5.2 42 74-115 234-279 (292)
93 PRK12784 hypothetical protein; 65.2 23 0.0005 25.1 5.2 43 44-94 28-78 (84)
94 PRK10476 multidrug resistance 65.1 8.6 0.00019 32.9 3.8 34 59-93 49-82 (346)
95 PRK15136 multidrug efflux syst 65.0 6.7 0.00015 34.6 3.2 41 52-93 55-95 (390)
96 TIGR00998 8a0101 efflux pump m 63.4 9.3 0.0002 32.2 3.7 31 62-93 46-76 (334)
97 PF00358 PTS_EIIA_1: phosphoen 60.0 34 0.00075 26.0 5.9 41 53-96 71-111 (132)
98 PRK10559 p-hydroxybenzoic acid 58.4 14 0.00031 31.4 4.0 32 61-93 50-81 (310)
99 COG2190 NagE Phosphotransferas 55.1 29 0.00064 27.4 4.9 66 40-108 57-126 (156)
100 TIGR01995 PTS-II-ABC-beta PTS 53.0 55 0.0012 31.0 7.2 52 40-94 514-569 (610)
101 TIGR00998 8a0101 efflux pump m 52.9 96 0.0021 26.0 8.1 13 103-115 274-286 (334)
102 PRK07051 hypothetical protein; 50.8 19 0.00042 24.5 2.9 29 62-91 51-79 (80)
103 PF00529 HlyD: HlyD family sec 49.8 11 0.00023 30.9 1.8 31 67-98 10-40 (305)
104 PRK15030 multidrug efflux syst 49.4 25 0.00053 30.9 4.1 33 60-93 67-99 (397)
105 PRK09824 PTS system beta-gluco 48.4 40 0.00087 32.1 5.5 51 40-93 530-584 (627)
106 TIGR03794 NHPM_micro_HlyD NHPM 45.7 30 0.00065 30.5 4.0 33 63-96 63-95 (421)
107 PF02666 PS_Dcarbxylase: Phosp 45.4 57 0.0012 26.0 5.3 60 44-104 122-181 (202)
108 PRK03598 putative efflux pump 44.8 26 0.00056 29.7 3.4 36 57-93 42-77 (331)
109 PF02749 QRPTase_N: Quinolinat 44.8 54 0.0012 22.7 4.5 39 54-93 29-69 (88)
110 PRK09439 PTS system glucose-sp 43.9 24 0.00053 28.0 2.9 15 97-111 58-72 (169)
111 TIGR00164 PS_decarb_rel phosph 43.7 32 0.0007 27.4 3.6 16 97-112 35-50 (189)
112 PF13437 HlyD_3: HlyD family s 42.7 30 0.00064 24.0 2.9 25 67-92 8-32 (105)
113 PF02666 PS_Dcarbxylase: Phosp 41.7 31 0.00067 27.6 3.2 40 98-138 22-78 (202)
114 PF12700 HlyD_2: HlyD family s 41.6 29 0.00062 28.7 3.1 29 63-93 26-54 (328)
115 COG0157 NadC Nicotinate-nucleo 41.5 40 0.00087 29.1 4.0 50 44-93 37-88 (280)
116 PRK09907 toxin MazF; Provision 41.2 32 0.00069 25.1 3.0 41 65-105 8-53 (111)
117 PRK02259 aspartoacylase; Provi 41.2 28 0.00061 29.5 3.0 57 59-116 214-274 (288)
118 PF02452 PemK: PemK-like prote 40.7 17 0.00037 25.3 1.4 27 67-93 3-29 (110)
119 PRK06748 hypothetical protein; 38.2 1.2E+02 0.0027 21.2 5.5 33 60-93 44-76 (83)
120 cd04456 S1_IF1A_like S1_IF1A_l 38.0 22 0.00047 24.7 1.5 40 32-75 27-66 (78)
121 TIGR01843 type_I_hlyD type I s 37.8 24 0.00052 30.3 2.2 33 63-96 48-80 (423)
122 TIGR00164 PS_decarb_rel phosph 37.2 64 0.0014 25.7 4.4 30 74-104 135-164 (189)
123 PRK15136 multidrug efflux syst 36.9 2.1E+02 0.0045 25.2 7.9 13 102-114 284-296 (390)
124 COG0511 AccB Biotin carboxyl c 35.8 36 0.00079 25.9 2.7 30 61-91 110-139 (140)
125 PLN00208 translation initiatio 35.4 30 0.00065 27.0 2.1 40 32-76 59-98 (145)
126 PRK02597 rpoC2 DNA-directed RN 35.3 79 0.0017 32.9 5.5 66 45-113 375-452 (1331)
127 cd05793 S1_IF1A S1_IF1A: Trans 35.1 28 0.00061 24.1 1.7 39 32-75 27-65 (77)
128 PRK10476 multidrug resistance 35.0 2.1E+02 0.0045 24.4 7.5 30 102-131 276-310 (346)
129 PRK10255 PTS system N-acetyl g 34.2 86 0.0019 30.1 5.3 52 40-94 550-605 (648)
130 PRK09812 toxin ChpB; Provision 34.1 48 0.001 24.4 3.0 40 65-104 8-52 (116)
131 cd01134 V_A-ATPase_A V/A-type 33.4 70 0.0015 28.7 4.3 37 74-110 54-93 (369)
132 smart00652 eIF1a eukaryotic tr 33.2 33 0.00071 24.0 1.9 40 31-75 31-70 (83)
133 PRK12784 hypothetical protein; 33.0 1.2E+02 0.0026 21.5 4.6 52 64-116 11-63 (84)
134 TIGR00008 infA translation ini 32.1 42 0.00091 22.9 2.2 26 44-71 42-67 (68)
135 PTZ00329 eukaryotic translatio 31.8 36 0.00077 26.9 2.0 41 32-77 59-99 (155)
136 TIGR01000 bacteriocin_acc bact 31.7 55 0.0012 29.3 3.5 55 41-95 41-95 (457)
137 KOG3748 Uncharacterized conser 31.5 1.1E+02 0.0023 27.1 5.0 40 96-135 348-400 (477)
138 TIGR00999 8a0102 Membrane Fusi 29.2 41 0.0009 27.0 2.1 18 98-115 90-107 (265)
139 PRK05305 phosphatidylserine de 28.5 1.6E+02 0.0034 23.8 5.3 46 56-104 139-184 (206)
140 PRK10559 p-hydroxybenzoic acid 28.0 43 0.00094 28.5 2.1 21 96-116 154-174 (310)
141 PF11776 DUF3315: Domain of un 27.8 48 0.001 21.1 1.8 19 42-60 28-46 (52)
142 PRK03140 phosphatidylserine de 27.5 1E+02 0.0022 25.9 4.2 56 45-104 180-235 (259)
143 cd06910 M14_ASTE_ASPA_like_7 A 27.5 68 0.0015 26.8 3.2 32 75-110 226-258 (272)
144 PF01551 Peptidase_M23: Peptid 27.2 58 0.0012 22.3 2.3 20 75-94 57-76 (96)
145 PRK03598 putative efflux pump 25.0 46 0.001 28.2 1.7 19 96-114 203-221 (331)
146 PRK04012 translation initiatio 24.8 58 0.0013 23.7 2.0 39 32-75 48-86 (100)
147 cd01617 DCX Ubiquitin-like dom 24.8 30 0.00065 23.7 0.5 27 122-148 8-34 (80)
148 KOG1775 U6 snRNA-associated Sm 24.4 91 0.002 22.0 2.8 45 43-87 18-66 (84)
149 COG0845 AcrA Membrane-fusion p 24.0 68 0.0015 26.0 2.5 29 63-92 71-99 (372)
150 COG2232 Predicted ATP-dependen 23.9 58 0.0013 29.2 2.1 25 68-93 330-354 (389)
151 PF06898 YqfD: Putative stage 23.9 1.6E+02 0.0034 26.1 4.9 67 41-109 156-246 (385)
152 COG1566 EmrA Multidrug resista 23.5 1E+02 0.0022 27.4 3.6 49 42-93 39-87 (352)
153 TIGR02644 Y_phosphoryl pyrimid 23.5 62 0.0013 29.3 2.3 19 75-93 380-398 (405)
154 PRK14042 pyruvate carboxylase 23.3 2.6E+02 0.0057 26.5 6.5 71 45-115 466-544 (596)
155 PRK14698 V-type ATP synthase s 22.3 1.2E+02 0.0026 30.8 4.2 57 55-111 104-163 (1017)
156 PRK15030 multidrug efflux syst 22.2 61 0.0013 28.4 2.0 21 96-116 173-193 (397)
157 PF11498 Activator_LAG-3: Tran 22.2 29 0.00064 31.2 0.0 53 98-158 228-282 (468)
158 TIGR01843 type_I_hlyD type I s 21.9 1.1E+02 0.0023 26.3 3.4 44 72-116 314-358 (423)
159 COG0361 InfA Translation initi 21.7 93 0.002 21.7 2.4 26 44-71 44-69 (75)
160 PF07290 DUF1449: Protein of u 21.4 1E+02 0.0022 25.2 3.0 30 64-93 160-190 (202)
161 TIGR00078 nadC nicotinate-nucl 21.4 1.4E+02 0.0031 25.1 4.0 47 45-93 30-78 (265)
162 PRK05820 deoA thymidine phosph 21.4 71 0.0015 29.2 2.3 22 72-93 383-405 (440)
163 PRK05848 nicotinate-nucleotide 21.2 1.4E+02 0.003 25.4 3.9 46 45-93 34-82 (273)
164 PRK09016 quinolinate phosphori 21.1 1.5E+02 0.0032 25.7 4.1 41 53-93 66-109 (296)
165 PHA02762 hypothetical protein; 21.0 74 0.0016 21.1 1.7 27 53-84 29-55 (62)
166 PRK05742 nicotinate-nucleotide 20.9 1.6E+02 0.0034 25.2 4.2 40 54-93 48-90 (277)
167 TIGR02643 T_phosphoryl thymidi 20.8 75 0.0016 29.1 2.3 22 72-93 382-404 (437)
168 COG0688 Psd Phosphatidylserine 20.7 1.3E+02 0.0028 25.2 3.6 85 28-116 143-229 (239)
169 PF06051 DUF928: Domain of Unk 20.7 2.7E+02 0.0059 22.2 5.3 54 61-138 67-123 (189)
170 PRK09783 copper/silver efflux 20.7 1.8E+02 0.0039 25.8 4.6 56 54-111 82-138 (409)
171 TIGR02645 ARCH_P_rylase putati 20.6 76 0.0016 29.5 2.3 22 72-93 449-471 (493)
172 PRK04350 thymidine phosphoryla 20.4 77 0.0017 29.4 2.3 19 75-93 445-463 (490)
173 TIGR02876 spore_yqfD sporulati 20.3 1.5E+02 0.0034 26.2 4.2 48 42-89 153-223 (382)
No 1
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=290.97 Aligned_cols=126 Identities=58% Similarity=1.013 Sum_probs=121.9
Q ss_pred cccCCcceeeCCceEEEEeC-CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEee
Q 031294 32 SSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV 110 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~v 110 (162)
+.+|++++|+.+|+||+.++ ++++||||+|||++||+|+||+||++|+++++|+++++|||.|++++++||++|+|++|
T Consensus 3 ~~~p~~l~Y~~~heWvr~e~d~~~tvGiT~~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 3 CNIPDDLKYTAEHEWVRVEGDGTATVGITDYAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred ccccccceeccceEEEEecCCCEEEEeCCHHHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 57899999999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcCCCCCCCCcEEEEEeCCh-hhhhcCCCHHHHHHHHHH
Q 031294 111 NTKLTETPGLVNSSPYEEGWLIKVKPSSP-SDLESLMDPQAYTKFCEE 157 (162)
Q Consensus 111 N~~l~~~P~lln~dpy~~GWl~~i~~~~~-~~~~~Lm~~~~Y~~~~~~ 157 (162)
|++|.++|++||+||||+|||++|+++++ ++++.||++++|.+++++
T Consensus 83 N~~l~~~PeliN~dPyg~gWi~klk~~d~~~~~~~L~~~~~y~~~~~~ 130 (131)
T COG0509 83 NEALVDSPELINSDPYGEGWIVKLKPADPSEELEALLDAEAYAELLKE 130 (131)
T ss_pred chhhhcChhhhccCCCCCceEEEEeeCChHHHHHhccCHHHHHHHhhc
Confidence 99999999999999999999999999997 559999999999999864
No 2
>PRK01202 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=6.4e-45 Score=276.11 Aligned_cols=125 Identities=59% Similarity=1.011 Sum_probs=122.2
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
+.+|++++||++|+||+.+++.++||||+|||+++|+|.||+||++|++|++|++|++||+.|++.+|+||++|+|+++|
T Consensus 2 ~~~p~~~~ys~~H~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 81 (127)
T PRK01202 2 MNIPADLKYTKSHEWVRVEGDTATVGITDHAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN 81 (127)
T ss_pred CcCCcCceECCCcEEEEEcCCEEEEeeCHHHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHH
Q 031294 112 TKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 156 (162)
Q Consensus 112 ~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~ 156 (162)
.+|.++|++||++||++|||++|++.+++++++||++++|.++|+
T Consensus 82 ~~l~~~p~~ln~~p~~~gWl~~v~~~~~~~~~~L~~~~~Y~~~~~ 126 (127)
T PRK01202 82 EALEDSPELVNEDPYGEGWLFKIKPSDESELDDLLDAEAYEALIE 126 (127)
T ss_pred HHhhhCcHhhcCCCCCCceEEEEEeCCHHHHHhCCCHHHHHHHhc
Confidence 999999999999999999999999999889999999999999986
No 3
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=100.00 E-value=5.1e-45 Score=276.73 Aligned_cols=125 Identities=56% Similarity=0.918 Sum_probs=121.0
Q ss_pred ccCCcceeeCCceEEEEeCC-EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 33 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 33 ~~p~~~~Ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
.+|++++||++|+|++.+++ .++||||+|||+++|+|.||+||++|++|++|++|++||++|++.+|+||++|+|+++|
T Consensus 1 ~~p~~~~y~~~H~Wv~~~~~g~~~vGiT~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 80 (127)
T TIGR00527 1 NVPADLRYSKEHEWVRVEGDGTATVGITEFAQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVN 80 (127)
T ss_pred CCCcCcEECCCcEEEEEcCCcEEEEeecHHHhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEeh
Confidence 47999999999999998864 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHH
Q 031294 112 TKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 157 (162)
Q Consensus 112 ~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~ 157 (162)
++|.++|++||++||++|||++|++.+++++++||++++|.++|++
T Consensus 81 ~~l~~~P~lln~~py~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~ 126 (127)
T TIGR00527 81 DALEDSPELVNEDPYGGGWLIKVKLSDESELEGLMDAEQYEATLED 126 (127)
T ss_pred HhhhhChHHHhCCCccCcEEEEEecCCHHHHHhcCCHHHHHHHhhc
Confidence 9999999999999999999999999999899999999999999974
No 4
>PRK13380 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=1.6e-44 Score=279.36 Aligned_cols=129 Identities=42% Similarity=0.748 Sum_probs=123.9
Q ss_pred cccCCcceeeC-CceEEEEeC-CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEe
Q 031294 32 SSVLDGLKYAS-SHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIE 109 (162)
Q Consensus 32 ~~~p~~~~Ys~-~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~ 109 (162)
+.+|++++|++ +|+|++.++ +.++||||+|||+++|+|++|+||++|++|++|++|++|||.|++.+|+||++|+|++
T Consensus 7 ~~~p~~~~Y~~~~H~Wv~~~~~g~~~vGitd~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~ 86 (144)
T PRK13380 7 CEIPSELRYTIKNHEWLRLEGDGTVTVGITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVE 86 (144)
T ss_pred ccCCccceECCCCeEEEEEcCCCEEEEecCHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEE
Confidence 45899999999 999999885 5899999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHhhc
Q 031294 110 VNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENA 160 (162)
Q Consensus 110 vN~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e~~ 160 (162)
+|.+|.++|++||++||++|||++|++++++++++||++++|.+++++...
T Consensus 87 vN~~l~~~P~lln~dpy~~gWl~~v~~~d~~~~~~Ll~~~~y~~~~~~~~~ 137 (144)
T PRK13380 87 VNEALEDSPELVNEDPYGEGWFFRFKPANPEELKQLLDGDAADRLLKENID 137 (144)
T ss_pred EHHhhhhChHHhcCCCCCCCeEEEEEECCHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997654
No 5
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=274.35 Aligned_cols=156 Identities=55% Similarity=0.901 Sum_probs=140.2
Q ss_pred hhhhhhhhhhhhhhccCC----CCcccccccccccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCc
Q 031294 4 RMWASSTANALRISCASK----TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGA 79 (162)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~ 79 (162)
++|+.+..+.+......+ ..++..-+++.-++.+++|++.|+||.+++++.+||||+||++.||+++||+||++|+
T Consensus 13 l~~s~r~~a~~~~~~~~~~~~l~ga~~~~~~~p~~~~~~~yt~qHEWV~~~~~vgtvGIt~~A~~~LGdvv~veLPe~Gt 92 (172)
T KOG3373|consen 13 LQWSGRGAAGLKGGMVGRGKQLNGAVSKHPPLPYALSGRKYTSQHEWVLVEGGVGTVGITDFAQEHLGDVVYVELPEVGT 92 (172)
T ss_pred hhhccccccccCccccCcccccchhhhccCCcccccccccccceeeEEEecCCeeEechhhhhhhhcCceEEEEcCCCCC
Confidence 367777777666432211 2334455667778889999999999999999999999999999999999999999999
Q ss_pred eeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHhh
Q 031294 80 SVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 159 (162)
Q Consensus 80 ~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e~ 159 (162)
.|.+|+.++.+|+.|+.++|++|++|+|++||+.|.++|.++|++||++|||+||+++++++++.||+.++|.+||++++
T Consensus 93 ~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~~~ele~Lm~~e~Y~kf~~eed 172 (172)
T KOG3373|consen 93 EVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSSPEELESLMNEEQYAKFCEEED 172 (172)
T ss_pred ccccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCCHHHHHHhcCHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=100.00 E-value=1.4e-42 Score=261.47 Aligned_cols=121 Identities=53% Similarity=0.965 Sum_probs=109.1
Q ss_pred ceeeCCceEEEEeC-CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 38 LKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 38 ~~Ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
++|+++|+|++.++ +.++||||++||+.+|+|++++||++|+++++|++|++||+.|++.+|+||++|+|++||++|.+
T Consensus 1 l~y~~~h~Wv~~~~~g~~~vGit~~a~~~lG~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~ 80 (122)
T PF01597_consen 1 LYYTEDHLWVKPEGDGVVRVGITDFAQDELGDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLD 80 (122)
T ss_dssp SEEETTSEEEEEETTTEEEEEE-HHHHHHH-SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT
T ss_pred CcCCCCcEEEEECCCCEEEEEECchHhhcCCceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccccc
Confidence 58999999999975 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHh
Q 031294 117 TPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 158 (162)
Q Consensus 117 ~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e 158 (162)
+|++||++||++|||++|++.++.++++||++++|.++++++
T Consensus 81 ~P~lln~~p~~~gWl~~i~~~d~~~~~~Ll~~~eY~~~~~~~ 122 (122)
T PF01597_consen 81 NPELLNSDPYGDGWLIKIKPSDPEEFDELLSAEEYEKFLKEE 122 (122)
T ss_dssp -TTHHHHSTTTTTEEEEEEESCGGGGGGSBEHHHHHHHHHC-
T ss_pred ChHHhccCCCCCCeEEEEEeCCHHHHHhCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999864
No 7
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=100.00 E-value=1.7e-39 Score=241.32 Aligned_cols=107 Identities=37% Similarity=0.652 Sum_probs=103.9
Q ss_pred eeeCCceEEEE-eCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccC
Q 031294 39 KYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (162)
Q Consensus 39 ~Ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~ 117 (162)
||+++|+|++. +++.++||||+|||++||+|+||+||++|++|++|++|++||++|++.+|+||++|+|+++|.+|.++
T Consensus 1 yy~~~H~Wv~~~~~~~~~vGiT~~aq~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~ 80 (110)
T TIGR03077 1 WYSDYHVWILPIHSQVVRLGLTSRMQENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD 80 (110)
T ss_pred CcCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence 69999999996 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCcEEEEEeCChhhhhcC
Q 031294 118 PGLVNSSPYEEGWLIKVKPSSPSDLESL 145 (162)
Q Consensus 118 P~lln~dpy~~GWl~~i~~~~~~~~~~L 145 (162)
|++||++||++|||++|+++++.++++|
T Consensus 81 P~lln~~py~~gWl~~v~~~~~~~~~~~ 108 (110)
T TIGR03077 81 TQPINHSPESEGWFVVVQLDEDFDGENL 108 (110)
T ss_pred hHhhcCCCCCCceEEEEEECCHHHhhcc
Confidence 9999999999999999999999888876
No 8
>PRK00624 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=1.9e-39 Score=242.39 Aligned_cols=109 Identities=35% Similarity=0.646 Sum_probs=105.1
Q ss_pred ceeeCCceEEEE-eCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 38 LKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 38 ~~Ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
++|+++|+|++. +++.++||||+|||+++|+|+||+||++|++|++|++|++||+.|++.+|+||++|+|+++|++|.+
T Consensus 2 ~~y~~~H~Wv~~~~~~~~~vGiT~~a~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 81 (114)
T PRK00624 2 MWYSDYHVWIEPIHSRIVRLGLTSKMQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALED 81 (114)
T ss_pred cccCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 689999999997 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCcEEEEEeCChhhhhcCC
Q 031294 117 TPGLVNSSPYEEGWLIKVKPSSPSDLESLM 146 (162)
Q Consensus 117 ~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm 146 (162)
+|++||++||++|||++|+++++.++++|-
T Consensus 82 ~P~lln~dpy~~gWl~~v~~~~~~~~~~~~ 111 (114)
T PRK00624 82 DIQPINNAPESEGWFVVVQLDEDFDSENLS 111 (114)
T ss_pred ChHhhcCCCCCCceEEEEEECChhHhhcCC
Confidence 999999999999999999999998888873
No 9
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=100.00 E-value=5.7e-33 Score=200.55 Aligned_cols=95 Identities=65% Similarity=1.094 Sum_probs=92.4
Q ss_pred eeCCceEEEEeC-CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCC
Q 031294 40 YASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETP 118 (162)
Q Consensus 40 Ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P 118 (162)
|+++|+|++.++ +.++||||++||+++|+|.++++|++|+.|++|+++++||+.|++.+|+||++|+|+++|.++.++|
T Consensus 1 y~~~h~W~~~~~~~~~~lGlt~~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p 80 (96)
T cd06848 1 YTKDHEWVKVEGDGIATVGITDYAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP 80 (96)
T ss_pred CCCCCEEEEECCCcEEEEeeCHHHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence 789999999985 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCcEEEE
Q 031294 119 GLVNSSPYEEGWLIKV 134 (162)
Q Consensus 119 ~lln~dpy~~GWl~~i 134 (162)
+++|++||++|||++|
T Consensus 81 ~~ln~~p~~~gWl~~i 96 (96)
T cd06848 81 ELINSDPYGEGWLVKI 96 (96)
T ss_pred HHHhCCCCCCCeEEEC
Confidence 9999999999999985
No 10
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.35 E-value=2e-12 Score=87.67 Aligned_cols=72 Identities=40% Similarity=0.475 Sum_probs=63.0
Q ss_pred EEeechhhhhhcCCeeEE-EcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEE
Q 031294 55 TVGITDHAQDHLGEVVFV-ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIK 133 (162)
Q Consensus 55 ~vGiTd~a~~~lG~I~~v-~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~ 133 (162)
+||++++++ .++....+ .+++.|+.+++|++++.+|++|+..+++||++|+|+++|.+..++ ++..+||++
T Consensus 1 ~~~~~~~~~-~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-------v~~g~~l~~ 72 (73)
T cd06663 1 TILIPDLAQ-HLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-------VEGDTPLVK 72 (73)
T ss_pred CcccCCCCC-CccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-------ECCCCEEEE
Confidence 589999999 77787777 457999999999999999999999999999999999999887654 566789987
Q ss_pred E
Q 031294 134 V 134 (162)
Q Consensus 134 i 134 (162)
|
T Consensus 73 i 73 (73)
T cd06663 73 I 73 (73)
T ss_pred C
Confidence 4
No 11
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=98.70 E-value=1.2e-07 Score=74.32 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=88.0
Q ss_pred CCceEEEEeCCEEEEeechh--hhhhcCCeeEEEc----------------CCCCceeecCCeEEEEEEec-ccceeecc
Q 031294 42 SSHEWVKHEGSVATVGITDH--AQDHLGEVVFVEL----------------PETGASVKQGGGFGVVESVK-ATSDVNSP 102 (162)
Q Consensus 42 ~~H~Wv~~e~~~~~vGiTd~--a~~~lG~I~~v~l----------------p~~G~~v~~g~~l~~IEs~K-~v~~i~sP 102 (162)
.+|.-.+..+.++.|++-.. +.+.-+.|..|++ ++-+..++...+|+.+-..+ ...-++|.
T Consensus 33 ~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~~ign~dRsqnkVSGK~KkgAl~lq~~s~Lc~~~~a~g~~y~V~sc 112 (172)
T KOG3266|consen 33 YDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTFQIGNCDRSQNKVSGKGKKGALILQELSPLCKFKTADGSTYVVRSC 112 (172)
T ss_pred CCceEEecCCceEEEEecCCCchhhcccceeeeecccccchhhhheeccccccccEeeccCCcceeEEecCCCeEEEeee
Confidence 45676666777888887543 3444455555554 22334577778888888776 67889999
Q ss_pred cceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCCh---hhhhcCCCHHHHHHHHH
Q 031294 103 ISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSP---SDLESLMDPQAYTKFCE 156 (162)
Q Consensus 103 vsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~---~~~~~Lm~~~~Y~~~~~ 156 (162)
|-|++++||++|..+|+++++.|..+|.++.+-|.-. +-.+.|++.++|++..+
T Consensus 113 VrG~LvEvN~rl~~~P~ll~~~pd~qGy~aI~lp~~e~~t~~~~~llt~eqy~ek~~ 169 (172)
T KOG3266|consen 113 VRGTLVEVNERLKTTPDLLREAPDNQGYIAILLPAIEEETEIKESLLTQEQYEEKSE 169 (172)
T ss_pred eceeEEEeehhhccCcHHHHhCCCcCcEEEEEecccccccccccccCCHHHHHHHHh
Confidence 9999999999999999999999999998888776543 34679999999987654
No 12
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.44 E-value=3.7e-07 Score=61.65 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=48.6
Q ss_pred echhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
+|.......|.|..+.+ +.|+.|++|++++.+|++|+..++.+|++|+|.+++-..
T Consensus 1 ~~~i~a~~~G~i~~~~v-~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~ 56 (70)
T PRK08225 1 MTKVYASMAGNVWKIVV-KVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQE 56 (70)
T ss_pred CCeEeCCCCEEEEEEEe-CCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecC
Confidence 45667788899888776 559999999999999999999999999999999987543
No 13
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=98.42 E-value=7.9e-07 Score=68.42 Aligned_cols=71 Identities=27% Similarity=0.444 Sum_probs=54.3
Q ss_pred eechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEE
Q 031294 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 135 (162)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~ 135 (162)
+.+.....+.|.++. -+.++|++|++||++|.||++|+..+|.||.+|+|.++ +.++-+.++ ||+ =|++|+
T Consensus 69 ~~~~V~SPm~Gtv~~-~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~I---lv~~G~~Ve---~G~-~L~~I~ 139 (140)
T COG0511 69 GGTQVTSPMVGTVYK-PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEI---LVKNGDPVE---YGD-PLAVIE 139 (140)
T ss_pred cCceEecCcceEEEE-EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEE---EecCCCccC---CCC-EEEEec
Confidence 444555667788766 34599999999999999999999999999999999999 555555553 333 455543
No 14
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=98.35 E-value=7.7e-07 Score=60.49 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=44.9
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.....|.|..+.. +.|+.|++||+++.+|++|...+|.||++|+|.+++-+.
T Consensus 6 ~a~~~G~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~ 57 (71)
T PRK05889 6 RAEIVASVLEVVV-NEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSV 57 (71)
T ss_pred eCCCCEEEEEEEe-CCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCC
Confidence 3456788877755 779999999999999999999999999999999997543
No 15
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=98.07 E-value=5.8e-06 Score=56.72 Aligned_cols=40 Identities=33% Similarity=0.563 Sum_probs=37.0
Q ss_pred cCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
+.++|+.|++||+++.||++|...++.||.+|+|.++.-+
T Consensus 21 ~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~ 60 (74)
T PF00364_consen 21 LVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVE 60 (74)
T ss_dssp SSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESST
T ss_pred EECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEEC
Confidence 3599999999999999999999999999999999998644
No 16
>PRK06748 hypothetical protein; Validated
Probab=98.05 E-value=9.5e-06 Score=57.66 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=44.2
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEE-ecccceeecccceEEEeeccccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVES-VKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs-~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
..+.|.|..+.. ++|+.|++||+++.||+ .|...++.||.+|+|.+++-+..
T Consensus 9 sp~~G~I~~w~v-k~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~G 61 (83)
T PRK06748 9 SPCYGKVEKLFV-RESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEG 61 (83)
T ss_pred cCCcEEEEEEEe-CCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCC
Confidence 456677777644 89999999999999999 88989999999999999975443
No 17
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=97.91 E-value=2.5e-05 Score=50.78 Aligned_cols=49 Identities=33% Similarity=0.502 Sum_probs=40.8
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
..-|.+..+.+ +.|+.+++|++++.+|+.|...+|.||.+|.|..++..
T Consensus 5 ~~~G~v~~~~v-~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~ 53 (67)
T cd06850 5 PMPGTVVKVLV-KEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVK 53 (67)
T ss_pred CccEEEEEEEe-CCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEEC
Confidence 34465554444 68999999999999999999999999999999998754
No 18
>PRK07051 hypothetical protein; Validated
Probab=97.91 E-value=1.8e-05 Score=55.07 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=35.8
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.+.|+.|++|++++.+|+.|...+|.||++|+|.+++-+
T Consensus 26 v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~ 64 (80)
T PRK07051 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVE 64 (80)
T ss_pred cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcC
Confidence 377999999999999999999999999999999998643
No 19
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.83 E-value=3.3e-05 Score=59.13 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=45.9
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccc
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
...+-|.|..+.+ +.|+.|++||+|+.+|++|+..+|.||.+|+|.+++-+..
T Consensus 65 ~Ap~~G~V~~i~V-~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~G 117 (130)
T PRK06549 65 PSPMPGTILKVLV-AVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPG 117 (130)
T ss_pred ECCCCEEEEEEEe-CCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCC
Confidence 4566778777766 7899999999999999999999999999999999875544
No 20
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=97.81 E-value=3.1e-05 Score=65.21 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=47.7
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS 137 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~ 137 (162)
|.|+.+. .++|+.|++||+|+.||++|+..+|.||.+|+|.+++-... +.+ +.| .-|++|.+.
T Consensus 17 g~~~~~~-~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g---~~v---~~g-~~l~~i~~~ 79 (371)
T PRK14875 17 GKVAGWL-VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEG---ETL---PVG-ALLAVVADA 79 (371)
T ss_pred EEEEEEE-cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCC---CEe---CCC-CEEEEEecC
Confidence 4555543 48999999999999999999999999999999999864433 233 223 367777653
No 21
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.78 E-value=3.5e-05 Score=60.28 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=41.6
Q ss_pred hhhcCCeeEE------EcCCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 63 QDHLGEVVFV------ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 63 ~~~lG~I~~v------~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
..+.|.++.. -+.++|+.|++||+++.||++|...+|.||++|+|+++.-
T Consensus 84 sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v 139 (155)
T PRK06302 84 SPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV 139 (155)
T ss_pred CCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence 4455654432 2458999999999999999999999999999999999953
No 22
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=97.77 E-value=3.5e-05 Score=60.39 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=43.2
Q ss_pred hhhhcCCeeEE------EcCCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 62 AQDHLGEVVFV------ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 62 a~~~lG~I~~v------~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
...+.|.++.. -+.++|+.|++||+++.||++|...+|.||.+|+|+++.-
T Consensus 84 ~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v 140 (156)
T TIGR00531 84 RSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILV 140 (156)
T ss_pred eCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEe
Confidence 35667776643 1458999999999999999999999999999999999953
No 23
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=97.61 E-value=9e-05 Score=62.88 Aligned_cols=39 Identities=21% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.++|+.|++||.|+.||++|+..+|.+|.+|+|++++-+
T Consensus 220 VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVk 258 (274)
T PLN02983 220 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAE 258 (274)
T ss_pred eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecC
Confidence 479999999999999999999999999999999999744
No 24
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.61 E-value=9.7e-05 Score=57.90 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=45.2
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.....|.|..+. .++|+.|++||.++.+|++|+..+|.||.+|+|..++-+.
T Consensus 88 ~ap~~G~I~~~~-V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~ 139 (153)
T PRK05641 88 TAPMPGKILRIL-VREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKE 139 (153)
T ss_pred ECCCCeEEEEEE-eCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCC
Confidence 456678777665 4899999999999999999999999999999999997543
No 25
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=97.44 E-value=0.0002 Score=64.27 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=39.9
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|+.+ +.++|+.|++||+|++||++|...+|.||.+|+|.++.-+-
T Consensus 59 g~I~~w-~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~ 105 (418)
T PTZ00144 59 GTVVEW-KKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEE 105 (418)
T ss_pred EEEEEE-EeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCC
Confidence 445544 34899999999999999999999999999999999986443
No 26
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=97.41 E-value=0.00022 Score=64.71 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=49.3
Q ss_pred CceEEEEe----CCEEEEeechhhhh-hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 43 SHEWVKHE----GSVATVGITDHAQD-HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 43 ~H~Wv~~e----~~~~~vGiTd~a~~-~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
-..|+++- ++...|=|-+.+.. .-|.|+.+ +.++|+.|++||+|+.||++|...+|.||.+|+|.++.-+
T Consensus 77 ~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w-~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~ 151 (463)
T PLN02226 77 LQRWVRPFSSESGDTVEAVVPHMGESITDGTLATF-LKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVK 151 (463)
T ss_pred hhhcccccccccCCceEEecCCCCCCcceEEEEEE-EeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeC
Confidence 35688862 22323333333322 12345444 3589999999999999999999999999999999998544
No 27
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.35 E-value=0.00028 Score=65.83 Aligned_cols=50 Identities=24% Similarity=0.463 Sum_probs=42.6
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
..+-|.|+.+.. ++|+.|++||++++||++|+..+|.||++|+|.++.-+
T Consensus 530 apm~G~V~~~~V-~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~ 579 (596)
T PRK14042 530 VAIPGSIIAIHV-SAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQ 579 (596)
T ss_pred cCcceEEEEEEe-CCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeC
Confidence 345566766644 78999999999999999999999999999999998543
No 28
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.31 E-value=0.00029 Score=65.49 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=41.5
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.+-|.|+.+ +.++|+.|++||+++.||++|+..+|.||++|+|.+++-+
T Consensus 523 p~~G~v~~~-~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~ 571 (582)
T TIGR01108 523 PIAGSIVKV-KVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVK 571 (582)
T ss_pred CccEEEEEE-EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeC
Confidence 345566555 3489999999999999999999999999999999998643
No 29
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.28 E-value=0.00035 Score=65.16 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=41.6
Q ss_pred hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 65 HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 65 ~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
+.|.|+.+. .++|+.|++||++++||++|+..+|.||++|+|.+++-..
T Consensus 531 ~~G~I~~~~-V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~ 579 (593)
T PRK14040 531 LAGNIFKVI-VTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKE 579 (593)
T ss_pred ccEEEEEEE-eCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCC
Confidence 345555554 3889999999999999999999999999999999998544
No 30
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=97.22 E-value=0.00042 Score=61.77 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=41.2
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
|+|+.. +.++|+.|++||+|+.||++|...+|.||.+|+|.++.-+..+
T Consensus 17 G~I~~W-~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~ 65 (404)
T COG0508 17 GTIVEW-LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD 65 (404)
T ss_pred EEEEEE-ecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC
Confidence 444433 3599999999999999999999999999999999999665443
No 31
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.21 E-value=0.00071 Score=62.74 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=58.5
Q ss_pred eeCCceEEEEeCCE------EEEeech--------hhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccce
Q 031294 40 YASSHEWVKHEGSV------ATVGITD--------HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISG 105 (162)
Q Consensus 40 Ys~~H~Wv~~e~~~------~~vGiTd--------~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG 105 (162)
+..+|.|+...|.. -.+|... ....+-|.|+.|.. +.|++|.+||+|+++|++|+...|.+|.+|
T Consensus 543 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V-~~G~~V~~G~~lvvlEAMKME~~l~A~~dG 621 (645)
T COG4770 543 RAGGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVSVAV-KEGQEVSAGDLLVVLEAMKMENTLRAPRDG 621 (645)
T ss_pred ecCCceEEecCCcCcccccccccccccccCCCCCceecCCCceEEEEEe-cCCCEecCCCeEEEeEehhcccceecCcCc
Confidence 34678888776532 1233211 23556799998877 889999999999999999999999999999
Q ss_pred EEEeecccccc
Q 031294 106 EVIEVNTKLTE 116 (162)
Q Consensus 106 ~Vv~vN~~l~~ 116 (162)
+|..+|-+-.+
T Consensus 622 ~V~~v~v~~Gd 632 (645)
T COG4770 622 VVAKLAVAEGD 632 (645)
T ss_pred EEEEEEecCCC
Confidence 99999765443
No 32
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.12 E-value=0.00052 Score=68.51 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=44.2
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
...+-|.|..+.. ++|+.|++||+++.||++|+..+|.||.+|+|++++-+
T Consensus 1136 ~a~~~G~v~~~~v-~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~ 1186 (1201)
T TIGR02712 1136 ESEYAGNFWKVLV-EVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQ 1186 (1201)
T ss_pred eCCceEEEEEEEe-CCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeC
Confidence 3456677777644 89999999999999999999999999999999999744
No 33
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.09 E-value=0.00074 Score=67.17 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=43.9
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
..+-|.|+.+.+ ++|++|++||+|++||++|+..+|.||++|+|.+++-+.
T Consensus 1079 a~~~G~v~~~~v-~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~ 1129 (1143)
T TIGR01235 1079 APMPGVIIEVKV-SSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKA 1129 (1143)
T ss_pred cCCCcEEEEEEe-CCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCC
Confidence 455677776655 779999999999999999999999999999999996443
No 34
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.07 E-value=0.00049 Score=66.15 Aligned_cols=56 Identities=30% Similarity=0.503 Sum_probs=47.5
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcC
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVN 122 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln 122 (162)
..+.|.|+.|.+ ..|++|++||+++++|++|+...|.+|++|+|.+| ++.+-+.|+
T Consensus 1084 ApmpG~Vv~v~V-~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v---~V~~gd~i~ 1139 (1149)
T COG1038 1084 APMPGVVVEVKV-KKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEV---LVKDGDQID 1139 (1149)
T ss_pred CCCCCceEEEEE-ccCCeecCCCeeeehhhhhhceeeecCCCceEeEE---EecCCCccc
Confidence 567888888876 78999999999999999999999999999999999 444444443
No 35
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.02 E-value=0.00089 Score=62.42 Aligned_cols=49 Identities=33% Similarity=0.476 Sum_probs=41.7
Q ss_pred hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 65 HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 65 ~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.-|.|..+. .++|+.|++|++++.||++|+..+|.||++|+|.+++-+.
T Consensus 529 ~~G~v~~~~-V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~ 577 (592)
T PRK09282 529 MPGTVVKVK-VKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKE 577 (592)
T ss_pred CcEEEEEEE-eCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCC
Confidence 345566554 4899999999999999999999999999999999986543
No 36
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=97.01 E-value=0.0011 Score=59.10 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=39.6
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|..+ +.++|+.|++||+++.||++|...++.||.+|+|.++.-+.
T Consensus 17 g~i~~w-~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~ 63 (407)
T PRK05704 17 ATIATW-HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63 (407)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCC
Confidence 344443 34899999999999999999999999999999999886443
No 37
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.97 E-value=0.00095 Score=66.42 Aligned_cols=50 Identities=32% Similarity=0.503 Sum_probs=43.1
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
..+-|.|+.+.+ ++|+.|++||+++.+|++|+..+|.||++|+|.+++-+
T Consensus 1081 apm~G~v~~i~v-~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~ 1130 (1146)
T PRK12999 1081 APMPGSVVTVLV-KEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVK 1130 (1146)
T ss_pred CCceEEEEEEEc-CCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeC
Confidence 445566766654 88999999999999999999999999999999999754
No 38
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=96.82 E-value=0.0021 Score=57.42 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=39.7
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|+.+ +.++|+.|++||+++.||++|...++.||.+|+|.++.-+.
T Consensus 15 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~e 61 (403)
T TIGR01347 15 GTVAEW-HKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61 (403)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCC
Confidence 344433 35899999999999999999999999999999999886544
No 39
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=96.74 E-value=0.0048 Score=39.17 Aligned_cols=47 Identities=30% Similarity=0.423 Sum_probs=38.9
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|..+.. ..|+.+..|++++.+|..|...++.+|.+|+|.+.+...
T Consensus 15 g~i~~~~~-~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~ 61 (74)
T cd06849 15 GTIVEWLV-KEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEE 61 (74)
T ss_pred EEEEEEEE-CCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCC
Confidence 44444333 788999999999999999999999999999998887443
No 40
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=96.65 E-value=0.0028 Score=59.38 Aligned_cols=45 Identities=31% Similarity=0.330 Sum_probs=38.6
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
|.|..+. .++|+.|++||+|+.||++|+..++.||.+|+|.++.-
T Consensus 15 g~i~~~~-v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~ 59 (633)
T PRK11854 15 VEVTEIL-VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKV 59 (633)
T ss_pred EEEEEEE-eCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEe
Confidence 4444443 48999999999999999999999999999999998754
No 41
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=96.63 E-value=0.0028 Score=59.06 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
|.|..+ +.++|+.|++||+|+.||++|...++.||.+|+|.++.-+..
T Consensus 150 g~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G 197 (590)
T TIGR02927 150 GTITQW-LKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEED 197 (590)
T ss_pred EEEEEE-EeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCC
Confidence 344443 358999999999999999999999999999999998865443
No 42
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.59 E-value=0.0029 Score=46.31 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=43.9
Q ss_pred CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCC
Q 031294 52 SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPG 119 (162)
Q Consensus 52 ~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~ 119 (162)
+.+.|=| ++..|.-.. -+.++|++|++||.++..+. -.-..++||+||+|+++.+...-++.
T Consensus 28 ~~v~ipL----~qh~G~~~~-p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~~~~g~ 89 (101)
T PF13375_consen 28 KKVVIPL----RQHIGAPAE-PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRPIPHGS 89 (101)
T ss_pred CEEEEEC----cccCCCcce-EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeEcCCCC
Confidence 4555544 333453322 34489999999999999975 33668999999999999777655443
No 43
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=96.59 E-value=0.003 Score=59.23 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=35.5
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.++|+.|++||+|+.||++|...+|.||.+|+|.++.-+
T Consensus 226 v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~ 264 (633)
T PRK11854 226 VKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVN 264 (633)
T ss_pred ecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecC
Confidence 378999999999999999999999999999999887533
No 44
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=96.43 E-value=0.0047 Score=48.43 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=34.4
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecc-cceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~-v~~i~sPvsG~Vv~vN~~l 114 (162)
|-.+++ ....|+.|.+||.++.+.+.|. +..++||++|+|+.+|+.=
T Consensus 89 G~~v~~-i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p 136 (150)
T PF09891_consen 89 GYQVYP-IVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP 136 (150)
T ss_dssp SSEEEE-SS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred ceEEEE-EcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence 444433 4589999999999999999987 7789999999999998653
No 45
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=96.41 E-value=0.0043 Score=57.33 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=37.2
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.++|+.|++|++++.||++|...+|.+|.+|+|.+++-+.
T Consensus 137 v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~ 176 (546)
T TIGR01348 137 VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKV 176 (546)
T ss_pred eCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCC
Confidence 4899999999999999999999999999999999887555
No 46
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=96.37 E-value=0.0019 Score=57.23 Aligned_cols=85 Identities=28% Similarity=0.405 Sum_probs=60.2
Q ss_pred eEEEEe-CCEEEEeechhhhhhc-CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcC
Q 031294 45 EWVKHE-GSVATVGITDHAQDHL-GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVN 122 (162)
Q Consensus 45 ~Wv~~e-~~~~~vGiTd~a~~~l-G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln 122 (162)
.|-++. .+.++|-.-.|+-..- |++.. =+.++|+.|++++.++.||.+|...++.||.+|+|.++ |..+-+.+.
T Consensus 63 ~~~~~~~ts~vtv~vP~faESiteG~l~~-~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~---lvk~gdtV~ 138 (457)
T KOG0559|consen 63 LWARVRSTSVVTVEVPPFAESITEGDLAQ-WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITEL---LVKDGDTVT 138 (457)
T ss_pred hheeeeccceeEEecCCcccccccchHHH-HhhCcccccccchhheeeeccceeeeccCCCcceeeEE---ecCCCCccc
Confidence 344432 3466676666664443 55541 14689999999999999999999999999999999999 444444443
Q ss_pred CCCCCCCcEEEEEeC
Q 031294 123 SSPYEEGWLIKVKPS 137 (162)
Q Consensus 123 ~dpy~~GWl~~i~~~ 137 (162)
...=|++|++.
T Consensus 139 ----~g~~la~i~~g 149 (457)
T KOG0559|consen 139 ----PGQKLAKISPG 149 (457)
T ss_pred ----CCceeEEecCC
Confidence 22357888873
No 47
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=96.30 E-value=0.0063 Score=56.07 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=36.0
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.++|+.|++|++++.||+.|...+|.||.+|+|..+.-+
T Consensus 140 v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~ 178 (547)
T PRK11855 140 VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVK 178 (547)
T ss_pred eCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecC
Confidence 489999999999999999999999999999999987544
No 48
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=96.25 E-value=0.0071 Score=55.72 Aligned_cols=47 Identities=32% Similarity=0.377 Sum_probs=39.9
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|..+. .++|+.|++|++++.||++|...++.||.+|+|..++-..
T Consensus 16 g~i~~~~-v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~ 62 (547)
T PRK11855 16 VEVIEWL-VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV 62 (547)
T ss_pred EEEEEEE-cCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCC
Confidence 3444432 4899999999999999999999999999999999987544
No 49
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=96.13 E-value=0.009 Score=53.50 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=37.7
Q ss_pred CeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 68 EVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 68 ~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
.|+.+ +.++|+.|++||+++.+|++|...++.+|.+|+|.++.-
T Consensus 14 ~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v 57 (416)
T PLN02528 14 ELLRW-FVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINF 57 (416)
T ss_pred EEEEE-EeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEe
Confidence 44433 348999999999999999999999999999999987753
No 50
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=96.11 E-value=0.0095 Score=55.05 Aligned_cols=47 Identities=34% Similarity=0.449 Sum_probs=39.9
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|+.+- .++|+.+++|+++++||++|...+|.+|.+|+|..++-+.
T Consensus 14 g~i~~~~-v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~ 60 (546)
T TIGR01348 14 GEVIEVL-VKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60 (546)
T ss_pred eEEEEEE-eCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecC
Confidence 3444432 4899999999999999999999999999999999887654
No 51
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=96.02 E-value=0.012 Score=52.20 Aligned_cols=42 Identities=31% Similarity=0.484 Sum_probs=37.8
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
.+.|+.+++|++++.||+.|...++.||.+|+|.+++-...+
T Consensus 24 v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~ 65 (411)
T PRK11856 24 VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD 65 (411)
T ss_pred eCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC
Confidence 489999999999999999999999999999999988665443
No 52
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=95.71 E-value=0.015 Score=52.28 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
.++|+.+++|++++.||+.|...++.||.+|+|.+++-+..+
T Consensus 21 v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~ 62 (435)
T TIGR01349 21 KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT 62 (435)
T ss_pred eCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC
Confidence 489999999999999999999999999999999998776654
No 53
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=95.46 E-value=0.022 Score=52.84 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=37.3
Q ss_pred cCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccc
Q 031294 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
+.++|+.|++||+++.||+.|...++.+|.+|+|.++--+..
T Consensus 133 ~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG 174 (539)
T PLN02744 133 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 174 (539)
T ss_pred EecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCC
Confidence 358999999999999999999999999999999988864443
No 54
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=95.09 E-value=0.036 Score=51.72 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=36.3
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.++|+.++.|++++.+|++|+..++.||.+|+|.+++-..
T Consensus 24 v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~ 63 (590)
T TIGR02927 24 KAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEE 63 (590)
T ss_pred ECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecC
Confidence 5889999999999999999999999999999998775543
No 55
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.01 E-value=0.036 Score=49.77 Aligned_cols=58 Identities=17% Similarity=0.411 Sum_probs=40.3
Q ss_pred CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccc
Q 031294 52 SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 52 ~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
+.+.|=+.++ +|.-.. -+.++|++|++||+|+...+. .-..++||+||+|++|++...
T Consensus 29 ~~v~i~l~~~----~g~~~~-~~V~~Gd~V~~Gq~i~~~~~~-~~~~~ha~vsG~V~~i~~~~~ 86 (435)
T TIGR01945 29 QELIVPLSQH----IGAPAE-PIVKVGDKVLKGQKIAKADGF-VSAPIHAPTSGTVVAIEERVS 86 (435)
T ss_pred CEEEEECccC----CCCCCc-eeeCCCCEECCCCEeccCCCc-ceeeeecCCCeEEEEeccccc
Confidence 4566665553 232211 234899999999999988432 357899999999999986543
No 56
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.83 E-value=0.03 Score=50.76 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=29.5
Q ss_pred CCCCceeecCCeEEEEEEecc-cceeecccceEEEeec
Q 031294 75 PETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVN 111 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~-v~~i~sPvsG~Vv~vN 111 (162)
.++|++|++|++|+ ++... -..++||+||+|++|+
T Consensus 46 V~~GD~V~~Gq~I~--~~~~~~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 46 VKEGDKVKKGQPLF--EDKKNPGVKFTSPASGTVVAIN 81 (448)
T ss_pred eCcCCEEcCCCEeE--ecCCCceEEEEcCCCeEEEEEc
Confidence 38999999999999 44433 3789999999999997
No 57
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=94.80 E-value=0.05 Score=49.49 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeeccccc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
.++|+.+++||+++.||+.|...++.||.+|+|.++.-+..
T Consensus 24 v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G 64 (464)
T PRK11892 24 KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEG 64 (464)
T ss_pred ecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCC
Confidence 47899999999999999999999999999999988766554
No 58
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.71 E-value=0.043 Score=46.54 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCCceeecCCeEEEEEEecc-cceeecccceEEEeeccccc
Q 031294 75 PETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~-v~~i~sPvsG~Vv~vN~~l~ 115 (162)
.++|++|++|++|+. ..|. -.-+.||+||+|.+||.-..
T Consensus 45 VkeGD~Vk~Gq~LF~--dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 45 VKEGDRVKAGQPLFE--DKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred eccCCEEeCCCeeEe--eCCCCCcEEecCCCeEEEEEecCCC
Confidence 389999999999964 3333 44578999999999997543
No 59
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=94.51 E-value=0.046 Score=52.37 Aligned_cols=48 Identities=29% Similarity=0.473 Sum_probs=44.3
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
..+-|+|+.+.+ ..|++|++|++++++-++|+..-+-||.+|+|..+.
T Consensus 1111 APMpG~vieikv-k~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~ 1158 (1176)
T KOG0369|consen 1111 APMPGTVIEIKV-KEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVH 1158 (1176)
T ss_pred CCCCCceEEEEE-ecCceecCCCceEeeecceeeeeecCCCCceeeEEE
Confidence 678899988887 789999999999999999999999999999999884
No 60
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=94.43 E-value=0.052 Score=49.35 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=48.8
Q ss_pred CEEEEeechhh-hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEee
Q 031294 52 SVATVGITDHA-QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV 110 (162)
Q Consensus 52 ~~~~vGiTd~a-~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~v 110 (162)
...+|+|-..- ...-|+|+.... ++|+++..||.|+.||++|+..++-++-+|.+-.|
T Consensus 37 ~h~~i~MPALSPTMeeGnIvsW~k-KeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKI 95 (470)
T KOG0557|consen 37 AHKTFSMPALSPTMEEGNIVSWKK-KEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKI 95 (470)
T ss_pred cceEeecCCCCccccCCceeeEee-ccCCccCCCceEEEEecccceeeeeeccCCeeeee
Confidence 34567766554 345699987755 89999999999999999999999999999999888
No 61
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=94.42 E-value=0.045 Score=52.16 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCCCceeecCCeEEEEEEecc-cceeecccceEEEeeccccc
Q 031294 75 PETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~-v~~i~sPvsG~Vv~vN~~l~ 115 (162)
.++|++|.+|++|+. +... -..|+||+||+|++|++...
T Consensus 53 V~~GD~V~~GQ~i~~--~~~~~s~~vhApvSG~V~~I~~~~~ 92 (695)
T PRK05035 53 VKVGDRVLKGQPLTQ--GDGRMSLPVHAPTSGTVVAIEPHPT 92 (695)
T ss_pred eCcCCEEcCCCEeee--cCCCceeEEeCCCCeEEeeeccccc
Confidence 389999999999994 4443 47899999999999986544
No 62
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=94.09 E-value=0.084 Score=46.86 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=40.3
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEec------------------------------------------------c
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESVK------------------------------------------------A 95 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K------------------------------------------------~ 95 (162)
+.-|-|..+.....|+.|++||+|+.|++.. .
T Consensus 129 rv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~ 208 (409)
T PRK09783 129 RAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQT 208 (409)
T ss_pred CcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 3456666665468999999999999998421 1
Q ss_pred cceeecccceEEEeecccccc
Q 031294 96 TSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 96 v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
-..|+||++|.|.+.|-...+
T Consensus 209 ~~~I~AP~dGvV~~~~v~~G~ 229 (409)
T PRK09783 209 RFTLKAPIDGVITAFDLRAGM 229 (409)
T ss_pred cEEEECCCCeEEEEEECCCCC
Confidence 236999999999999876654
No 63
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=93.78 E-value=0.055 Score=49.08 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=30.9
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
.++|++|++||+|+.-... .-..++||+||+|++|+.
T Consensus 45 Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 45 VRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred eCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 3899999999999876543 246799999999999965
No 64
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=93.43 E-value=0.089 Score=46.79 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=45.6
Q ss_pred CEEEEeechhhhhhcCCeeEEE-cCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 52 SVATVGITDHAQDHLGEVVFVE-LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 52 ~~~~vGiTd~a~~~lG~I~~v~-lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
+.+.+-++|.+--.. ++.--+ +.+.|+.|.+-|++|.|.|+|+..+|.|-.+|+|..+-..+
T Consensus 63 gvv~f~LsdiGEGI~-Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ 125 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIA-EVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSP 125 (474)
T ss_pred ceEEEEhhhccccce-eeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCc
Confidence 355555555443221 222223 35899999999999999999999999999999999886554
No 65
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.09 E-value=0.17 Score=44.41 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=42.4
Q ss_pred CCCCceeecCCeEEEEEEe---cccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCC
Q 031294 75 PETGASVKQGGGFGVVESV---KATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSS 138 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~---K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~ 138 (162)
.+.|++|++||.++.|-.. +...+|++|++|.|...-.. -++ ..||++++--..
T Consensus 271 v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-----~~v-----~~Gdl~~~v~~~ 327 (331)
T COG3608 271 VDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-----RLV-----QPGDLLKVVGRE 327 (331)
T ss_pred ecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-----ccc-----CCCCeeeeeccc
Confidence 4889999999999999885 77889999999999998322 223 346888876443
No 66
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.05 E-value=0.24 Score=41.94 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=34.9
Q ss_pred cCCCCceeecCCeEEEEEEe--cccceeecccceEEEeeccccc
Q 031294 74 LPETGASVKQGGGFGVVESV--KATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~--K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
..+.|+.|++||.++.|... ....+++||.+|.|........
T Consensus 233 ~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~ 276 (287)
T cd06251 233 LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPL 276 (287)
T ss_pred ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCc
Confidence 45789999999999999764 4468899999999998865543
No 67
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.07 E-value=0.36 Score=41.26 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=35.7
Q ss_pred EcCCCCceeecCCeEEEEEEe---cccceeecccceEEEeeccccc
Q 031294 73 ELPETGASVKQGGGFGVVESV---KATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 73 ~lp~~G~~v~~g~~l~~IEs~---K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
-+.+.|+.|++||.++.|-.. ....+++||.+|.|..++....
T Consensus 242 ~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~ 287 (298)
T cd06253 242 PAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPL 287 (298)
T ss_pred ECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCe
Confidence 346789999999999999774 3478899999999999876543
No 68
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=92.05 E-value=0.29 Score=41.50 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=30.7
Q ss_pred cCCCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
..+.|+.|++||.++.|.+ .+++||++|.|...=
T Consensus 178 ~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli 211 (256)
T TIGR03309 178 TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI 211 (256)
T ss_pred ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence 5689999999999999977 699999999999873
No 69
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=91.62 E-value=0.2 Score=46.34 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=38.3
Q ss_pred CCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCc
Q 031294 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLV 121 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~ll 121 (162)
++|++|.+||+|+.=++ ....++||+||+|.++=+...-+|+-+
T Consensus 50 kvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~sgl 93 (529)
T COG4656 50 KVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPSGL 93 (529)
T ss_pred eeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcccC
Confidence 79999999999988777 788999999999999987777666644
No 70
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.16 E-value=0.43 Score=40.60 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=32.1
Q ss_pred CCCCceeecCCeEEEEEEe--cccceeecccceEEEeec
Q 031294 75 PETGASVKQGGGFGVVESV--KATSDVNSPISGEVIEVN 111 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~--K~v~~i~sPvsG~Vv~vN 111 (162)
.+.|+.|++||.++.|-.. ..+.+++||.+|.|+..|
T Consensus 246 ~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~~ 284 (293)
T cd06255 246 VPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGIH 284 (293)
T ss_pred cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence 5789999999999999765 446789999999999984
No 71
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=90.72 E-value=0.57 Score=40.70 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=34.3
Q ss_pred EcCCCCceeecCCeEEEEEEe----cccceeecccceEEEeeccc
Q 031294 73 ELPETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 73 ~lp~~G~~v~~g~~l~~IEs~----K~v~~i~sPvsG~Vv~vN~~ 113 (162)
-..+.|+.|++||.++.|-.. +...+++||.+|.|...+..
T Consensus 268 ~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~ 312 (325)
T TIGR02994 268 FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFP 312 (325)
T ss_pred EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCC
Confidence 345789999999999999774 34788999999999998654
No 72
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.33 E-value=0.7 Score=39.69 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=39.7
Q ss_pred CCCCceeecCCeEEEEEEe----cccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEE
Q 031294 75 PETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 135 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~----K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~ 135 (162)
.+.|+.|++||.|+.|-.. +...+++||.+|.|...+.... ++. | .|+++|-
T Consensus 259 ~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~~-----v~~---G-~~l~~i~ 314 (316)
T cd06252 259 VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPGL-----VRR---G-DCLAVLA 314 (316)
T ss_pred cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCCc-----cCC---C-CEEEEEe
Confidence 4779999999999999764 4477899999999999876532 221 3 4787763
No 73
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=90.23 E-value=0.31 Score=40.41 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=22.9
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
..-|.|..+.+ +.|+.|++|++|+.+++.
T Consensus 32 ~~~G~V~~i~v-~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 32 EVAGKITKISV-REGQKVKKGQVLARLDDD 60 (322)
T ss_pred cccEEEEEEEc-CCCCEEcCCCEEEEECCH
Confidence 44477776654 799999999999999764
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=90.18 E-value=0.29 Score=30.97 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=24.8
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEecc
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~ 95 (162)
..-|.|..+.+ +.|+.|++||+|+.+++...
T Consensus 8 ~~~G~V~~v~V-~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 8 PVSGRVESVYV-KEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCCEEEEEEEe-cCCCEEcCCCEEEEECcHHH
Confidence 34577777755 79999999999999988643
No 75
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.99 E-value=0.76 Score=38.88 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=33.4
Q ss_pred CCCCceeecCCeEEEEEEe--cccceeecccceEEEeeccc
Q 031294 75 PETGASVKQGGGFGVVESV--KATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~--K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.+.|+.|++||.++.|-.. ....+++||.+|.|...+..
T Consensus 238 ~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~ 278 (288)
T cd06254 238 VKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT 278 (288)
T ss_pred cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC
Confidence 4679999999999999653 55788999999999998764
No 76
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=89.90 E-value=0.29 Score=45.60 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=43.6
Q ss_pred hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccC
Q 031294 65 HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (162)
Q Consensus 65 ~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~ 117 (162)
+-|-|..| |.+.|+.+++|+.++++|++|+...+++|-+|+|-.++-++.++
T Consensus 608 MpG~Iekv-~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~ 659 (670)
T KOG0238|consen 608 MPGIIEKV-LVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT 659 (670)
T ss_pred CCCeeeee-eccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc
Confidence 34444444 34789999999999999999999999999999999999887764
No 77
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=89.74 E-value=0.7 Score=40.35 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=29.1
Q ss_pred eechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
-..+...+.-|.|..+.+ +.|+.|++||.|+.|++.
T Consensus 60 ~~~~l~~~v~G~V~~i~v-~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 60 EVAEIRPQVGGIIIKRNF-IEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEEEeccCcEEEEEEEc-CCcCEecCCCEEEEECcH
Confidence 344555677899988766 899999999999999864
No 78
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.17 E-value=0.53 Score=36.75 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=34.1
Q ss_pred CCCCceeecCCeEEEEEEecc-cceeecccceEEEeeccc
Q 031294 75 PETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~-v~~i~sPvsG~Vv~vN~~ 113 (162)
..+|..+.+|++|+.+-+-|. +.-+.+|++|+|+-+-+.
T Consensus 107 aDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~E~ 146 (161)
T COG4072 107 ADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYIDEF 146 (161)
T ss_pred ecccchhcCCCceeEEEecccceEEecCCCCcEEEEEeec
Confidence 478999999999999998876 666889999999999663
No 79
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=88.63 E-value=0.88 Score=39.69 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=26.6
Q ss_pred hhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 60 d~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
+...+.-|.|..+.+ +.|+.|++||.|+.|++.
T Consensus 65 ~l~~~v~G~V~~v~v-~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 65 EVRARVAGIVTARTY-EEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEeccCcEEEEEEEC-CCCCEEcCCCEEEEECCH
Confidence 344667788888754 889999999999999874
No 80
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=88.58 E-value=0.63 Score=40.31 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.4
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
...-|.|..+.+ +.|+.|++||+|+.+++.
T Consensus 66 a~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 66 AQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred cccceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence 456688888775 799999999999999873
No 81
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=87.74 E-value=0.56 Score=41.95 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCCceeecCCeEEEEEEecccc-eeecccceEEEeeccc
Q 031294 76 ETGASVKQGGGFGVVESVKATS-DVNSPISGEVIEVNTK 113 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~-~i~sPvsG~Vv~vN~~ 113 (162)
++|+.|++|++++ |..|.-+ -+.||+||+|+++|.-
T Consensus 46 ~~gD~VkkGq~Lf--EdKknpgv~~Tap~sG~V~aI~RG 82 (447)
T COG1726 46 REGDAVKKGQVLF--EDKKNPGVVFTAPVSGKVTAIHRG 82 (447)
T ss_pred ccCCeeeccceee--ecccCCCeEEeccCCceEEEeecc
Confidence 6899999999986 5555533 4779999999999864
No 82
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=87.57 E-value=1.2 Score=39.66 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=27.1
Q ss_pred chhhhhhcCCeeEEEcCCCCceeecCCeEEEEEE
Q 031294 59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (162)
Q Consensus 59 Td~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs 92 (162)
.....+.-|.|..+.+ +.|+.|++||.|+.|.+
T Consensus 88 v~v~~~vsG~V~~i~v-~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 88 VTVRSRVDGQLMALHF-QEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEEEccccEEEEEEEC-CCCCEecCCCEEEEECc
Confidence 3444677889988876 79999999999999965
No 83
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=85.05 E-value=2.1 Score=37.67 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.7
Q ss_pred cCCCCceeecCCeEEEEEEe--ccccee--ecccceEEEeecccc
Q 031294 74 LPETGASVKQGGGFGVVESV--KATSDV--NSPISGEVIEVNTKL 114 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~--K~v~~i--~sPvsG~Vv~vN~~l 114 (162)
..+.|+.|++||.++.|-.. ..+.++ .||.+|.|..++...
T Consensus 303 ~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~~ 347 (359)
T cd06250 303 RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASRR 347 (359)
T ss_pred ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCCc
Confidence 35789999999999999764 334454 999999999987554
No 84
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=81.38 E-value=3.8 Score=42.82 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=47.3
Q ss_pred cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCChh
Q 031294 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPS 140 (162)
Q Consensus 66 lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~~ 140 (162)
-|+++... .+.|+.|.+|++-+.||.+|++.++.++.+|.|.-+ .+|...-. | | .=|.++..++|+
T Consensus 693 ~GKLl~yl-VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i-----~~~G~~i~-a-G-~vlakL~lDdpS 758 (2196)
T KOG0368|consen 693 PGKLLQYL-VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI-----KQEGDAIE-A-G-SVLAKLTLDDPS 758 (2196)
T ss_pred CccceEEE-ecCCCceecCCeeeehehhheeeeeeccCCceEEEe-----cCCCCccC-c-c-ceeEEeecCChh
Confidence 45555433 378999999999999999999999999999999765 23332211 1 2 256777777653
No 85
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=79.19 E-value=2.4 Score=29.25 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEc-CCCCceeecCCeEEEEEEecc
Q 031294 72 VEL-PETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 72 v~l-p~~G~~v~~g~~l~~IEs~K~ 95 (162)
+.| .++|+.|++||+|++|.+...
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYANDE 58 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEESSS
T ss_pred eEecCcCcCEECCCCeEEEEEcCCh
Confidence 444 699999999999999988753
No 86
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=78.80 E-value=6.5 Score=29.65 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=34.1
Q ss_pred eeCCceE-EEEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 40 Ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
|...|.. ++.+++ .+.|||+....+ |+- |--+.+.|++|++||+|+.+-..
T Consensus 50 ~~T~HA~gi~~~~G~evLiHiGidTV~L~--G~g-F~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 50 FPTKHAFGIESDSGVEILIHIGIDTVKLN--GEG-FTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred ccCCCEEEEEeCCCcEEEEEeeeceeecC--CCc-eEEEecCCCEEcCCCEEEEEcHH
Confidence 3445655 333334 688999876554 442 33345899999999999988644
No 87
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=77.15 E-value=7.5 Score=29.38 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=33.3
Q ss_pred eeCCceE-EEEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 40 Ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
+...|.. ++.+++ .+.|||.....+ |+- |--+.+.|++|++||+|+.+--.
T Consensus 50 ~~T~HA~~i~~~~G~eiLiHiGidTv~l~--g~g-F~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 50 FPTKHAIGIESDSGVEILIHIGIDTVKLN--GEG-FTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred ccCCCEEEEEeCCCcEEEEEeeeeeeecC--CCc-eEEEecCCCEEcCCCEEEEEcHH
Confidence 3345655 343333 688999876655 442 22234799999999999888543
No 88
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=73.53 E-value=11 Score=30.01 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=34.5
Q ss_pred eeCCceE-EEEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 40 Ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
|...|-. ++.+++ .+.|||+....+ |+- |--+.+.|++|++||+|+.+--.
T Consensus 72 f~T~HAigi~t~~G~eiLIHiGiDTV~L~--G~g-F~~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 72 FETNHAFSIESDSGVELFVHFGIDTVELK--GEG-FKRIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred cCCCCEEEEEeCCCcEEEEEEeecccccC--CCc-eEEEecCCCEEeCCCEEEEEcHH
Confidence 4445655 344444 688999776444 553 33345899999999999998655
No 89
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=71.12 E-value=7 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.3
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
|.|..|.+ +.|+.|++||+|+.|+..
T Consensus 25 G~V~~i~V-~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 25 DRIKKLLV-AEGDRVQAGQVLAELDSR 50 (327)
T ss_pred cEEEEEEc-cCCCEecCCcEEEEecCc
Confidence 88888876 889999999999999875
No 90
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=71.08 E-value=4.2 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.0
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEE
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IE 91 (162)
....-|.|..+.+ +.|+.+..|++|+.||
T Consensus 42 ~s~~~G~v~~~~~-~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 42 VAEEAGTVKKINV-QEGDFVNEGDVLLEIE 70 (70)
T ss_pred eCCCCEEEEEEEe-cCCCEECCCCEEEEEC
Confidence 3446677777665 6799999999999986
No 91
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=70.34 E-value=5.4 Score=30.49 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.6
Q ss_pred eeecccceEEEeecc
Q 031294 98 DVNSPISGEVIEVNT 112 (162)
Q Consensus 98 ~i~sPvsG~Vv~vN~ 112 (162)
.|+||++|+|..+-+
T Consensus 41 ~v~AP~~G~v~~i~~ 55 (132)
T PF00358_consen 41 KVYAPVDGTVTMIFP 55 (132)
T ss_dssp EEEESSSEEEEEE-T
T ss_pred eEEEEeeEEEEEEcC
Confidence 589999999999854
No 92
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=69.30 E-value=11 Score=31.17 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=34.0
Q ss_pred cCCCCceeecCCeE--EEEEEe--cccceeecccceEEEeeccccc
Q 031294 74 LPETGASVKQGGGF--GVVESV--KATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 74 lp~~G~~v~~g~~l--~~IEs~--K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
..+.|+.|++|+++ +.+-.. ....++.+|.+|.|+.+|....
T Consensus 234 ~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~~~~~ 279 (292)
T PF04952_consen 234 EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIRESPY 279 (292)
T ss_dssp TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESECTSSE
T ss_pred eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeCcccc
Confidence 34889999999999 766544 3456899999999999987654
No 93
>PRK12784 hypothetical protein; Provisional
Probab=65.15 E-value=23 Score=25.11 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=32.6
Q ss_pred ceEEEE-----eCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEec
Q 031294 44 HEWVKH-----EGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (162)
Q Consensus 44 H~Wv~~-----e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K 94 (162)
|+|=++ .++ .+.+|++ |.|..+++ ++|+++..+..|+.+|.+-
T Consensus 28 YEWEkL~~I~~~dg~le~v~vGiS-------G~I~~v~V-e~Gq~i~~dtlL~~~edDl 78 (84)
T PRK12784 28 YEWEKLMMIRKNNGELEKVAVGIS-------GNIRLVNV-VVGQQIHTDTLLVRLEDDL 78 (84)
T ss_pred EeeeeeeEEeecCCcEEEEEEeee-------eeEEEEEe-ecCceecCCcEEEEEeece
Confidence 577654 233 6889987 56666776 8999999999999998763
No 94
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=65.12 E-value=8.6 Score=32.92 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.5
Q ss_pred chhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 59 Td~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.....+.-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 49 v~v~~~v~G~V~~v~V-~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 49 VHVASEVGGRIVELAV-TENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEcccCceEEEEEEe-CCCCEEcCCCEEEEECcH
Confidence 3334566788887765 899999999999999986
No 95
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=64.96 E-value=6.7 Score=34.56 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=31.5
Q ss_pred CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 52 SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 52 ~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
..+.-.......+.-|.|..|.+ +.|+.|++||+|+.|++.
T Consensus 55 a~v~~~~v~v~a~v~G~V~~v~V-~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 55 AYVAGNQVQIMSQVSGSVTKVWA-DNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred cEEeeeEEEEeccCCeEEEEEEc-CCCCEECCCCEEEEECcH
Confidence 33433444555677899998876 799999999999999874
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=63.43 E-value=9.3 Score=32.16 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.9
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
....-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 46 ~a~~~G~V~~i~v-~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 46 SSQVSGSVIEVNV-DDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred cccCceEEEEEEe-CCCCEEcCCCEEEEECch
Confidence 3466788887765 799999999999999887
No 97
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=60.03 E-value=34 Score=26.03 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=27.3
Q ss_pred EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEeccc
Q 031294 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96 (162)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v 96 (162)
.+.|||+....+ |+- |--+.+.|++|++||+|+.+-..+-.
T Consensus 71 LiHiGidTv~L~--G~g-F~~~v~~G~~V~~G~~L~~~D~~~i~ 111 (132)
T PF00358_consen 71 LIHIGIDTVKLN--GEG-FETLVKEGDKVKAGQPLIEFDLEKIK 111 (132)
T ss_dssp EEE-SBSGGGGT--TTT-EEESS-TTSEE-TTEEEEEE-HHHHH
T ss_pred EEEEccchhhcC--Ccc-eEEEEeCCCEEECCCEEEEEcHHHHH
Confidence 688999887655 553 33455899999999999998765433
No 98
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=58.40 E-value=14 Score=31.41 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=26.4
Q ss_pred hhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 61 ~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.+.+.-|.|..+.+ +.|+.|++||+|+.+++.
T Consensus 50 i~~~v~G~V~~v~V-~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 50 IAPDVSGLITQVNV-HDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EccCCceEEEEEEe-CCcCEEcCCCEEEEECcH
Confidence 33567788888876 689999999999999884
No 99
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=55.13 E-value=29 Score=27.40 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=40.9
Q ss_pred eeCCceEE-EEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEE
Q 031294 40 YASSHEWV-KHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVI 108 (162)
Q Consensus 40 Ys~~H~Wv-~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv 108 (162)
|-..|-.- +.+++ .+.|||+....+ |+ -|=.+.+.|++|++||+|+.+--..--..=++++.-.|+
T Consensus 57 FpTkHAigi~t~~GvEiLiHiGiDTV~L~--Ge-gF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVv 126 (156)
T COG2190 57 FPTKHAIGIETDEGVEILIHIGIDTVKLN--GE-GFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVV 126 (156)
T ss_pred eeCCcEEEEEcCCCcEEEEEeceeeEEEC--Cc-ceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEE
Confidence 44456433 22334 688999987655 77 344456999999999999888655333333444444343
No 100
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=52.96 E-value=55 Score=30.96 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=35.3
Q ss_pred eeCCceE-EEEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEec
Q 031294 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (162)
Q Consensus 40 Ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K 94 (162)
+...|-. ++.+++ .+.|||+....+ |+- |--+.+.|++|++||+++++.-..
T Consensus 514 ~~t~Ha~gi~~~~G~eiliHiGidTv~l~--g~g-F~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 514 FPTKHAIGIRSDNGIEILIHVGIDTVELN--GEG-FEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred cCCCCEEEEEECCCcEEEEEeccchhccC--CCC-eEEEecCcCEEcCCCEEEEecHHH
Confidence 4455665 333444 688999876554 553 233348999999999999986553
No 101
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=52.92 E-value=96 Score=25.96 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=10.3
Q ss_pred cceEEEeeccccc
Q 031294 103 ISGEVIEVNTKLT 115 (162)
Q Consensus 103 vsG~Vv~vN~~l~ 115 (162)
+.|+|..|.+...
T Consensus 274 ~~G~V~~Is~~~~ 286 (334)
T TIGR00998 274 FEGKVTGISMGTG 286 (334)
T ss_pred EEEEEEEECCCcc
Confidence 6899999988643
No 102
>PRK07051 hypothetical protein; Validated
Probab=50.81 E-value=19 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=23.1
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEE
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IE 91 (162)
....-|.|..+.. +.|+.++.|++|+.++
T Consensus 51 ~a~~~G~v~~i~~-~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 51 EAEAAGRVVEFLV-EDGEPVEAGQVLARIE 79 (80)
T ss_pred eCCCCEEEEEEEc-CCcCEECCCCEEEEEe
Confidence 3556788777765 7789999999999885
No 103
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=49.78 E-value=11 Score=30.90 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccce
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSD 98 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~ 98 (162)
|-|..|. .+.|+.|++||+|+.|.......+
T Consensus 10 G~V~~i~-V~eG~~VkkGq~L~~LD~~~~~a~ 40 (305)
T PF00529_consen 10 GIVTEIL-VKEGQRVKKGQVLARLDPTDYEAD 40 (305)
T ss_dssp EEEEEE--S-TTEEE-TTSECEEE--HHHHHH
T ss_pred eEEEEEE-ccCcCEEeCCCEEEEEEeeccchh
Confidence 5566664 489999999999999997654433
No 104
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=49.40 E-value=25 Score=30.90 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=26.9
Q ss_pred hhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 60 d~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
+...+.-|.|..+.+ +.|+.|++|+.|+.|+..
T Consensus 67 ~l~a~vsG~V~~v~v-~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 67 EVRPQVSGIILKRNF-KEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEecCcEEEEEEEc-CCCCEecCCCEEEEECCH
Confidence 344667799988765 889999999999999864
No 105
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=48.44 E-value=40 Score=32.10 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=34.9
Q ss_pred eeCCceE-EEEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 40 Ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
|...|-. ++-+++ .+.|||+..-.+ |+= |--+.+.|++|++||+++++.-.
T Consensus 530 f~T~HAigi~t~~G~eiLiHiGiDTV~L~--G~g-F~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 530 FATLHAIGLESDDGVEVLIHVGIDTVKLD--GKF-FTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred cCCCcEEEEEeCCCcEEEEEechhhhhcC--CCC-ceEEecCCCEEcCCCEEEEEcHH
Confidence 4456765 343444 688999876544 553 23334899999999999998655
No 106
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=45.67 E-value=30 Score=30.52 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v 96 (162)
...-|.|..+.+ +.|+.|++|++|+.|+.....
T Consensus 63 a~~~G~V~~i~V-~eG~~V~kGq~L~~l~~~~~~ 95 (421)
T TIGR03794 63 SPGSGVVIDLDV-EVGDQVKKGQVVARLFQPELR 95 (421)
T ss_pred CCCCeEEEEEEC-CCcCEECCCCEEEEECcHHHH
Confidence 556688887744 899999999999999887543
No 107
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=45.44 E-value=57 Score=25.99 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=40.6
Q ss_pred ceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccc
Q 031294 44 HEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (162)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvs 104 (162)
-.++..+.+...|.+...|.-..|.|+.---++.|+.+++||.++.++- .....+.-|-+
T Consensus 122 R~~~~i~~~~G~v~~v~Vga~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~ 181 (202)
T PF02666_consen 122 RVVLVIETKFGKVAVVQVGALLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD 181 (202)
T ss_pred EEEEEEEECCCEEEEEEeccceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCC
Confidence 3444444333356777777788888876543468999999999999997 44445555544
No 108
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=44.79 E-value=26 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=28.3
Q ss_pred eechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
...+...+.-|.|..+.+ +.|+.|++||+|+.+++.
T Consensus 42 ~~i~v~a~~~G~V~~i~v-~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 42 RTVNLGFRVGGRLASLAV-DEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEEeecccCcEEEEEEc-CCCCEEcCCCEEEEEChH
Confidence 333445667788877764 899999999999999876
No 109
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=44.78 E-value=54 Score=22.67 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=23.5
Q ss_pred EEEeechhh--hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 54 ATVGITDHA--QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 54 ~~vGiTd~a--~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
+.-|+.... .+.+ .+..--+.+.|+.+++|++++.+++.
T Consensus 29 V~aG~~~~~~i~~~l-~~~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 29 VLAGLEEAEEIFEKL-GLEVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EE-SHHHHHHHHHHC-TEEEEESS-TT-EEETTCEEEEEEEE
T ss_pred EEECHHHHHHHHhhc-cEEEEEEeCCCCCccCCcEEEEEEeC
Confidence 345754332 3334 44333345999999999999999986
No 110
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=43.94 E-value=24 Score=28.02 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=13.1
Q ss_pred ceeecccceEEEeec
Q 031294 97 SDVNSPISGEVIEVN 111 (162)
Q Consensus 97 ~~i~sPvsG~Vv~vN 111 (162)
..++||++|+|+.+-
T Consensus 58 ~~v~AP~dG~V~~vf 72 (169)
T PRK09439 58 NKMVAPVDGTIGKIF 72 (169)
T ss_pred CEEEecCCeEEEEEc
Confidence 578999999999884
No 111
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=43.70 E-value=32 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.2
Q ss_pred ceeecccceEEEeecc
Q 031294 97 SDVNSPISGEVIEVNT 112 (162)
Q Consensus 97 ~~i~sPvsG~Vv~vN~ 112 (162)
..+.||++|+|+.+.+
T Consensus 35 ~~ivSPaDG~v~~i~~ 50 (189)
T TIGR00164 35 EAVLSPADGRIDVVER 50 (189)
T ss_pred CEEEeCCCcEEEEEEe
Confidence 3489999999999854
No 112
>PF13437 HlyD_3: HlyD family secretion protein
Probab=42.69 E-value=30 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=13.0
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEE
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVES 92 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs 92 (162)
|-|..+.. ..|+.+.+|++++.|..
T Consensus 8 G~V~~~~~-~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 8 GVVVSINV-QPGEVVSAGQPLAEIVD 32 (105)
T ss_pred EEEEEEeC-CCCCEECCCCEEEEEEc
Confidence 33443333 55666666666655554
No 113
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=41.74 E-value=31 Score=27.56 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=25.6
Q ss_pred eeecccceEEEeecc-----------------ccccCCCCcCCCCCCCCcEEEEEeCC
Q 031294 98 DVNSPISGEVIEVNT-----------------KLTETPGLVNSSPYEEGWLIKVKPSS 138 (162)
Q Consensus 98 ~i~sPvsG~Vv~vN~-----------------~l~~~P~lln~dpy~~GWl~~i~~~~ 138 (162)
.|.||.+|+|..+-+ +|+.++... ..++..||.+.+.++.
T Consensus 22 ~ivSPaDG~v~~~~~i~~~~~~~iKg~~y~l~~ll~~~~~~-~~~~~~g~~i~i~Lsp 78 (202)
T PF02666_consen 22 AIVSPADGKVLVIGEIEEDSLFQIKGQPYSLRELLGDPSPL-AEPFQGGTFIVIYLSP 78 (202)
T ss_pred EEEeCcCcEEEeeEEECCCceEEEecCcCCHHHHhCccccc-eeccCCceEEEEEcCC
Confidence 689999999999921 233332111 1247788988887643
No 114
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=41.65 E-value=29 Score=28.67 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=18.4
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
...-|.| .+. .+.|++|++|++|+.+++.
T Consensus 26 ~~~~G~v-~~~-v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 26 APVSGRV-SVN-VKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp -SS-EEE-EE--S-TTSEEETT-EEEEEE-H
T ss_pred CCCCEEE-EEE-eCCcCEECCCCEEEEEECh
Confidence 4445676 444 3889999999999999865
No 115
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.49 E-value=40 Score=29.10 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=34.9
Q ss_pred ceEEEEeCCEEE-EeechhhhhhcCCeeEE-EcCCCCceeecCCeEEEEEEe
Q 031294 44 HEWVKHEGSVAT-VGITDHAQDHLGEVVFV-ELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 44 H~Wv~~e~~~~~-vGiTd~a~~~lG~I~~v-~lp~~G~~v~~g~~l~~IEs~ 93 (162)
-.|+..+++++. +.+-....+++|.=..+ ...+.|+.+++|+.++.+|+.
T Consensus 37 a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 37 AVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCCEEEEEecc
Confidence 356666766554 33344557778843333 356999999999999999986
No 116
>PRK09907 toxin MazF; Provisional
Probab=41.24 E-value=32 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=30.3
Q ss_pred hcCCeeEEEc-CCCCceeecCCeEEEEEEec----ccceeecccce
Q 031294 65 HLGEVVFVEL-PETGASVKQGGGFGVVESVK----ATSDVNSPISG 105 (162)
Q Consensus 65 ~lG~I~~v~l-p~~G~~v~~g~~l~~IEs~K----~v~~i~sPvsG 105 (162)
.=|+|+.++| |..|.+..+-.|+.+|-... .-.-+.+|++-
T Consensus 8 ~rGdI~~vdl~P~~G~E~~g~RP~lVvs~d~~n~~~~~viv~PiTs 53 (111)
T PRK09907 8 DMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTT 53 (111)
T ss_pred CCCcEEEEECCCCCCcccCCCCeEEEEcchHhcccCCeEEEEEecC
Confidence 3499999999 99999999999998887542 12334556654
No 117
>PRK02259 aspartoacylase; Provisional
Probab=41.19 E-value=28 Score=29.50 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=39.4
Q ss_pred chhhhhhcCCeeEEEcCCC--C--ceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 59 TDHAQDHLGEVVFVELPET--G--ASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 59 Td~a~~~lG~I~~v~lp~~--G--~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
.++-...-|++.-+=-|.+ + +.|++||+|+.. .......+.+|-+|..+-+|+...-
T Consensus 214 ~~~pr~~~g~~~g~vhp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pvfine~ay~ 274 (288)
T PRK02259 214 IDYPRDENGQIAAMIHPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPVFINEAAYY 274 (288)
T ss_pred cCCCCCCCCCEeEEechhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeEEecHHHHH
Confidence 4444444565543333333 5 669999999888 5566777889999999999887653
No 118
>PF02452 PemK: PemK-like protein; InterPro: IPR003477 PemK is a growth inhibitor in Escherichia coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. It is responsible for mediating cell death through inhibiting protein synthesis through the cleavage of single-stranded RNA. PemK is part of the PemK-PemI system, where PemI is an antitoxin that inhibits the action of the PemK toxin []. PemK homologues have been found in a wide range of bacteria, which together form an endonuclease family that interfere with mRNA function. This family consists of the PemK protein in addition to ChpA, ChpB, Kid and MazF.; GO: 0003677 DNA binding; PDB: 1M1F_A 2C06_A 3NFC_F 1UB4_B 1NE8_A.
Probab=40.69 E-value=17 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=16.3
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
|+|+++++|..|.+..+..|+.+|-..
T Consensus 3 GdI~~v~~p~~~~e~~k~RP~vVls~~ 29 (110)
T PF02452_consen 3 GDIVWVDFPDFGSEMGKRRPAVVLSNN 29 (110)
T ss_dssp TEEEEEE-S--TTS--SEEEEEE-S-H
T ss_pred ceEEEEECCCCCcccCCcccEEEEEee
Confidence 899999999778887777777666543
No 119
>PRK06748 hypothetical protein; Validated
Probab=38.23 E-value=1.2e+02 Score=21.24 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=25.1
Q ss_pred hhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 60 d~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
+.-...-|.|..+.. +.|+.+..|++++.|+..
T Consensus 44 ei~Ap~~G~v~~i~v-~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 44 EIKVGISGYIESLEV-VEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCCEEEEEEEe-CCCCEECCCCEEEEEECC
Confidence 334556677777644 889999999999999754
No 120
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=37.98 E-value=22 Score=24.71 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=30.2
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcC
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (162)
+.+|..++ . +.||+. |+.+.|.+++|.++.-|+|++.-.+
T Consensus 27 ~~i~gK~R--k-~iwI~~-GD~VlV~~~~~~~~~kg~Iv~r~~~ 66 (78)
T cd04456 27 VSIPGKLR--K-NIWIKR-GDFLIVDPIEEGEDVKADIIFVYCK 66 (78)
T ss_pred EEEchhhc--c-CEEEcC-CCEEEEEecccCCCceEEEEEEeCH
Confidence 44554433 3 389865 7899999999988888999998654
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.80 E-value=24 Score=30.33 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=26.9
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v 96 (162)
...-|.|..+.+ +.|+.|++|++++.+++....
T Consensus 48 ~~~~G~v~~i~V-~eG~~V~kG~~L~~ld~~~~~ 80 (423)
T TIGR01843 48 HLEGGIVREILV-REGDRVKAGQVLVELDATDVE 80 (423)
T ss_pred cCCCcEEEEEEe-CCCCEecCCCeEEEEccchhh
Confidence 445688877665 899999999999999988653
No 122
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=37.21 E-value=64 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.7
Q ss_pred cCCCCceeecCCeEEEEEEecccceeecccc
Q 031294 74 LPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvs 104 (162)
.++.|+.+++||.++.++-. ...+++.|-+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~ 164 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN 164 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC
Confidence 45789999999999999988 4445666754
No 123
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=36.89 E-value=2.1e+02 Score=25.19 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=9.6
Q ss_pred ccceEEEeecccc
Q 031294 102 PISGEVIEVNTKL 114 (162)
Q Consensus 102 PvsG~Vv~vN~~l 114 (162)
++.|+|..|....
T Consensus 284 ~~~G~V~~I~~~~ 296 (390)
T PRK15136 284 VYTGKVVGLDMGT 296 (390)
T ss_pred eEEEEEEEECCcc
Confidence 5789999886543
No 124
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=35.82 E-value=36 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=23.6
Q ss_pred hhhhhcCCeeEEEcCCCCceeecCCeEEEEE
Q 031294 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (162)
Q Consensus 61 ~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IE 91 (162)
.....-|.|..|-. +.|+.|+.||+|+.|+
T Consensus 110 I~A~~~G~V~~Ilv-~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 110 IEAPADGVVKEILV-KNGDPVEYGDPLAVIE 139 (140)
T ss_pred ecCCCCcEEEEEEe-cCCCccCCCCEEEEec
Confidence 33455677777655 8999999999999987
No 125
>PLN00208 translation initiation factor (eIF); Provisional
Probab=35.44 E-value=30 Score=27.04 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=30.6
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCC
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPE 76 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~ 76 (162)
+.+|-.++. +.||+. |+.+.|.+.+| +..-|+|++.-.++
T Consensus 59 a~IpGKmRK---rIWI~~-GD~VlVel~~~-d~~KgdIv~ry~~d 98 (145)
T PLN00208 59 CHIRGKMRK---KVWIAA-GDIILVGLRDY-QDDKADVILKYMPD 98 (145)
T ss_pred EEEecccee---eEEecC-CCEEEEEccCC-CCCEEEEEEEcCHH
Confidence 456655554 689865 78999999999 68889999987653
No 126
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=35.33 E-value=79 Score=32.94 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=44.7
Q ss_pred eEEEEeCCEEEEeechhh--hhh---cCCeeEEEcCCCCceeecCCeEEEEEEe-------cccceeecccceEEEeecc
Q 031294 45 EWVKHEGSVATVGITDHA--QDH---LGEVVFVELPETGASVKQGGGFGVVESV-------KATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a--~~~---lG~I~~v~lp~~G~~v~~g~~l~~IEs~-------K~v~~i~sPvsG~Vv~vN~ 112 (162)
.|+-..++.++|.=.+.+ +.. .|.+.+| +.|+.|++++.++.+-+. |..-.|+||++|+|---+.
T Consensus 375 a~~~~~~~~~~i~~~~~~~~~~~~ip~~s~l~v---~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~ 451 (1331)
T PRK02597 375 ALQAEVDFDLVLKPSGKGKPQKIEITQGSLLFV---DDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADL 451 (1331)
T ss_pred EEEEeeccEEEEEeCCCCceEEEEeCCCCEEEE---ECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCC
Confidence 677666666666533321 111 2333443 579999999999999874 3456899999999987664
Q ss_pred c
Q 031294 113 K 113 (162)
Q Consensus 113 ~ 113 (162)
-
T Consensus 452 V 452 (1331)
T PRK02597 452 I 452 (1331)
T ss_pred c
Confidence 3
No 127
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=35.08 E-value=28 Score=24.05 Aligned_cols=39 Identities=18% Similarity=0.480 Sum_probs=29.9
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcC
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (162)
+.+|..++ . +.|++. |+.+.|.+++| +..-|+|+|.-.+
T Consensus 27 a~i~gK~r--k-~iwI~~-GD~V~Ve~~~~-d~~kg~Iv~r~~~ 65 (77)
T cd05793 27 CRIRGKMR--K-RVWINE-GDIVLVAPWDF-QDDKADIIYKYTP 65 (77)
T ss_pred EEEchhhc--c-cEEEcC-CCEEEEEeccc-cCCEEEEEEEcCH
Confidence 45665555 3 699865 78999999999 7888999987654
No 128
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=35.04 E-value=2.1e+02 Score=24.37 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=18.7
Q ss_pred ccceEEEeecccccc-----CCCCcCCCCCCCCcE
Q 031294 102 PISGEVIEVNTKLTE-----TPGLVNSSPYEEGWL 131 (162)
Q Consensus 102 PvsG~Vv~vN~~l~~-----~P~lln~dpy~~GWl 131 (162)
.+.|+|..|.+.+.. .|..+--.|....|.
T Consensus 276 ~~~G~V~~Is~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (346)
T PRK10476 276 PFEGKVDSIGWGVLPDDGGNVPRGLPYVPRSINWV 310 (346)
T ss_pred eEEEEEEEECCcccccccccccccCCCCCCCCceE
Confidence 478999999987643 233443444444566
No 129
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=34.19 E-value=86 Score=30.11 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=33.5
Q ss_pred eeCCceE-EEEeCC---EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEec
Q 031294 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (162)
Q Consensus 40 Ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K 94 (162)
+...|.- ++.+++ .+.|||+....+ |+= |--+.+.|++|++||+++++.-..
T Consensus 550 ~~T~HA~gi~t~~G~eiLIHiGidTV~l~--G~g-F~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 550 FNTNHAFCLETEKGAEIVVHMGIDTVALE--GKG-FKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred cCCCcEEEEEcCCCCEEEEEeccchhccC--CCC-ceEEecCCCEEcCCCEEEEEcHHH
Confidence 3445654 233333 678898766544 442 223348999999999999886553
No 130
>PRK09812 toxin ChpB; Provisional
Probab=34.14 E-value=48 Score=24.38 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred hcCCeeEEEc-CCCCceeecC-CeEEEEEEecc---cceeecccc
Q 031294 65 HLGEVVFVEL-PETGASVKQG-GGFGVVESVKA---TSDVNSPIS 104 (162)
Q Consensus 65 ~lG~I~~v~l-p~~G~~v~~g-~~l~~IEs~K~---v~~i~sPvs 104 (162)
.=|+|+.++| |..|.+.+.+ .|+.+|-+... -.-+.+|++
T Consensus 8 ~rGdI~~v~l~P~~G~E~~gk~RP~vVvS~d~~n~~~~viv~PiT 52 (116)
T PRK09812 8 ERGDIVLVGFDPASGHEQQGAGRPALVLSVAAFNQLGMTLVAPIT 52 (116)
T ss_pred CCCcEEEEECCCCCccccCCCcCeEEEEccchhcccCcEEEEEcc
Confidence 3599999999 8889988654 88888865421 122455655
No 131
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=33.37 E-value=70 Score=28.69 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=29.2
Q ss_pred cCCCCceeecCCeEEEEEEec-ccceeeccc--ceEEEee
Q 031294 74 LPETGASVKQGGGFGVVESVK-ATSDVNSPI--SGEVIEV 110 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~K-~v~~i~sPv--sG~Vv~v 110 (162)
..++|+.|..||.+++|.-.. -.+.|..|- .|+|..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~ 93 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI 93 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE
Confidence 358999999999999995433 467777775 7999888
No 132
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=33.21 E-value=33 Score=24.04 Aligned_cols=40 Identities=13% Similarity=0.395 Sum_probs=29.3
Q ss_pred ccccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcC
Q 031294 31 FSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (162)
Q Consensus 31 ~~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (162)
.+.+|..++ + +.||+. |+.+.|.+++|. +.-|+|++.-.+
T Consensus 31 la~ipgK~R--k-~iwI~~-GD~VlVe~~~~~-~~kg~Iv~r~~~ 70 (83)
T smart00652 31 LARIPGKMR--K-KVWIRR-GDIVLVDPWDFQ-DVKADIIYKYTK 70 (83)
T ss_pred EEEEchhhc--c-cEEEcC-CCEEEEEecCCC-CCEEEEEEEeCH
Confidence 355665554 3 789865 789999999885 778899887654
No 133
>PRK12784 hypothetical protein; Provisional
Probab=33.00 E-value=1.2e+02 Score=21.49 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=41.9
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEe-cccceeecccceEEEeecccccc
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESV-KATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~-K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
.-.|.|..+-+ ..++.+-.=++|+.|+.. +....+..-+||.|..+|-+..+
T Consensus 11 ~~~G~Vekifi-~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq 63 (84)
T PRK12784 11 SYEGKVEEIFV-NESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ 63 (84)
T ss_pred ccccEEEEEEE-cCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc
Confidence 34566655543 678899999999999987 66888999999999999988765
No 134
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=32.08 E-value=42 Score=22.89 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=15.3
Q ss_pred ceEEEEeCCEEEEeechhhhhhcCCeeE
Q 031294 44 HEWVKHEGSVATVGITDHAQDHLGEVVF 71 (162)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~ 71 (162)
+.|+.+ |+.+.|-+++| +..-|.|+|
T Consensus 42 rI~I~~-GD~V~Ve~spy-d~tkgrIi~ 67 (68)
T TIGR00008 42 YIRILP-GDKVKVELSPY-DLTRGRITY 67 (68)
T ss_pred cEEECC-CCEEEEEECcc-cCCcEeEEe
Confidence 455543 56777777776 444466554
No 135
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=31.76 E-value=36 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.474 Sum_probs=29.9
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCC
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPET 77 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~ 77 (162)
+.+|--++. +.||.. |+++.|.+++| +..-|+|+|.-.+..
T Consensus 59 a~I~GKmRK---~IWI~~-GD~VlVel~~y-d~~KgdIi~Ry~~de 99 (155)
T PTZ00329 59 CHIRGKMRK---RVWINI-GDIILVSLRDF-QDSKADVILKYTPDE 99 (155)
T ss_pred EEeecccee---eEEecC-CCEEEEeccCC-CCCEEEEEEEcCHHH
Confidence 445555553 588865 78999999888 677899998866533
No 136
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.66 E-value=55 Score=29.31 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=32.9
Q ss_pred eCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecc
Q 031294 41 ASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 41 s~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~ 95 (162)
.+-..+|.-.|.+.--|=....|...|-++.==+.+.|+.|++||+|+.+.....
T Consensus 41 ~~~~~~v~a~G~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 41 AKKEIVIRTTGTIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred EeeeEEEEEeEEEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 3334445444433333333344555555544223499999999999999987644
No 137
>KOG3748 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.51 E-value=1.1e+02 Score=27.13 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=29.6
Q ss_pred cceeecccceEEEeeccccccCCC--------CcCCCCCC-----CCcEEEEE
Q 031294 96 TSDVNSPISGEVIEVNTKLTETPG--------LVNSSPYE-----EGWLIKVK 135 (162)
Q Consensus 96 v~~i~sPvsG~Vv~vN~~l~~~P~--------lln~dpy~-----~GWl~~i~ 135 (162)
..++.--++|+|.-.|..|..-|- +-.+|||| -||-+++.
T Consensus 348 slevfigfdgkikitngqlknlpyyetksvgqlpdsdcygfevtdmgwrvkld 400 (477)
T KOG3748|consen 348 SLEVFIGFDGKIKITNGQLKNLPYYETKSVGQLPDSDCYGFEVTDMGWRVKLD 400 (477)
T ss_pred cEEEEEeccceEEeccccccCCCcccccccccCCCccccceEeecceeEEEeh
Confidence 334555689999999999887663 55778885 48988865
No 138
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=29.15 E-value=41 Score=27.02 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.2
Q ss_pred eeecccceEEEeeccccc
Q 031294 98 DVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 98 ~i~sPvsG~Vv~vN~~l~ 115 (162)
.|+||++|.|..+|....
T Consensus 90 ~i~AP~dG~V~~~~~~~G 107 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLG 107 (265)
T ss_pred EEECCCCeEEEEEEcCCC
Confidence 589999999999977653
No 139
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=28.50 E-value=1.6e+02 Score=23.76 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=30.8
Q ss_pred EeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccc
Q 031294 56 VGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (162)
Q Consensus 56 vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvs 104 (162)
+.+...+--..+.|+. ..+.|+.+++||.++.++-. ...+++-|-+
T Consensus 139 ~~~~~i~~~~~r~I~~--~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~ 184 (206)
T PRK05305 139 IGVVQIAGLIARRIVC--YVKEGDEVERGERFGLIRFG-SRVDVYLPLG 184 (206)
T ss_pred EEEEEeCeEEccEEEE--eCCCCCEEccCcEEeEEecC-CeEEEEEcCC
Confidence 3344444444455542 34789999999999999988 3555777765
No 140
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=28.01 E-value=43 Score=28.48 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.1
Q ss_pred cceeecccceEEEeecccccc
Q 031294 96 TSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 96 v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
-..|+||++|.|..+|-...+
T Consensus 154 ~~~I~AP~dGvV~~~~~~~G~ 174 (310)
T PRK10559 154 RTVIRAPADGWVTNLNVYTGE 174 (310)
T ss_pred CCEEECCCCeEEEeEecCCCC
Confidence 357999999999999866543
No 141
>PF11776 DUF3315: Domain of unknown function (DUF3315); InterPro: IPR024572 This is a bacterial family of uncharacterised proteins, which include YohN from Escherichia coli K12.; PDB: 2L1S_A.
Probab=27.80 E-value=48 Score=21.14 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.2
Q ss_pred CCceEEEEeCCEEEEeech
Q 031294 42 SSHEWVKHEGSVATVGITD 60 (162)
Q Consensus 42 ~~H~Wv~~e~~~~~vGiTd 60 (162)
.+|.|++..++.+.|-+++
T Consensus 28 ~G~~Wvrv~~dyvLv~~~t 46 (52)
T PF11776_consen 28 RGYHWVRVGGDYVLVAIAT 46 (52)
T ss_dssp TTEEEEE-SSEEEEEETTT
T ss_pred CCCEeEEECCeEEEEEcCC
Confidence 4799999998888777544
No 142
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=27.55 E-value=1e+02 Score=25.89 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=38.0
Q ss_pred eEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccc
Q 031294 45 EWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (162)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvs 104 (162)
..+..+.+...|.+...+.-..|.|+.. ..|+.+++||.++.++-. ....+.-|-+
T Consensus 180 ~v~~i~~~~G~v~~v~Vga~~Vg~I~~~---~~g~~v~kGee~G~F~fG-Stvvllf~~~ 235 (259)
T PRK03140 180 SVTEVNSDGEHMALVKVGAMFVNSIELT---HERDTVQKGEEMAYFSFG-STVVLLFEKD 235 (259)
T ss_pred EEEEEEeCCceEEEEEEeeEEeeEEEEe---cCCCEEecCcEeeeeccC-CeEEEEEeCC
Confidence 4444443334466666667777887754 469999999999999988 4455555543
No 143
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=27.47 E-value=68 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=25.6
Q ss_pred CCCCceeec-CCeEEEEEEecccceeecccceEEEee
Q 031294 75 PETGASVKQ-GGGFGVVESVKATSDVNSPISGEVIEV 110 (162)
Q Consensus 75 p~~G~~v~~-g~~l~~IEs~K~v~~i~sPvsG~Vv~v 110 (162)
...++.+.+ |+.|+..- ..++++|.+|.|+-.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl~~ 258 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVLIM 258 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEEEc
Confidence 356889988 99999942 489999999988654
No 144
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=27.23 E-value=58 Score=22.31 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCCCceeecCCeEEEEEEec
Q 031294 75 PETGASVKQGGGFGVVESVK 94 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K 94 (162)
.+.|+.|++|+.|+.+-...
T Consensus 57 v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 57 VKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp S-TTSEE-TTCEEEEEBSCS
T ss_pred ceecccccCCCEEEecCCCC
Confidence 47999999999999987543
No 145
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=24.98 E-value=46 Score=28.18 Aligned_cols=19 Identities=11% Similarity=0.344 Sum_probs=15.4
Q ss_pred cceeecccceEEEeecccc
Q 031294 96 TSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 96 v~~i~sPvsG~Vv~vN~~l 114 (162)
-..|+||++|.|..++-..
T Consensus 203 ~~~I~AP~dG~V~~~~~~~ 221 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEP 221 (331)
T ss_pred cCEEECCCCeEEEeccCCC
Confidence 4689999999999886543
No 146
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=24.83 E-value=58 Score=23.73 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=27.4
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcC
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (162)
+.+|..++ . ..||+. |+.+.|.+++|. ..=|+|+|.-.+
T Consensus 48 a~i~GK~R--k-~IwI~~-GD~VlVe~~~~~-~~kg~Iv~r~~~ 86 (100)
T PRK04012 48 GRIPGKMK--K-RMWIRE-GDVVIVAPWDFQ-DEKADIIWRYTK 86 (100)
T ss_pred EEEchhhc--c-cEEecC-CCEEEEEecccC-CCEEEEEEEcCH
Confidence 34454444 2 588864 789999999996 677888887543
No 147
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=24.81 E-value=30 Score=23.72 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCCCCCCCcEEEEEeCChhhhhcCCCH
Q 031294 122 NSSPYEEGWLIKVKPSSPSDLESLMDP 148 (162)
Q Consensus 122 n~dpy~~GWl~~i~~~~~~~~~~Lm~~ 148 (162)
|.|++..|+.+-|.+.....++.||+.
T Consensus 8 NGD~~~~g~~~~i~~~~~~sfd~lL~~ 34 (80)
T cd01617 8 NGDPFFKGVRLLVNRRRFKSFDALLDD 34 (80)
T ss_pred CCCCCCCCEEEEEChhhhCCHHHHHHH
Confidence 789999999999987666667777653
No 148
>KOG1775 consensus U6 snRNA-associated Sm-like protein [RNA processing and modification]
Probab=24.40 E-value=91 Score=21.98 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=35.2
Q ss_pred CceEEEEeCC----EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeE
Q 031294 43 SHEWVKHEGS----VATVGITDHAQDHLGEVVFVELPETGASVKQGGGF 87 (162)
Q Consensus 43 ~H~Wv~~e~~----~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l 87 (162)
+..||-..++ -..+|++||.--.|-+++..+....|..+++-+.+
T Consensus 18 ski~iimksdkE~~GtL~GFDd~VNmvLeDvtEye~~~egr~~tk~~~i 66 (84)
T KOG1775|consen 18 SKIWIIMKSDKEFVGTLVGFDDFVNMVLEDVTEYEITPEGRRMTKLDQI 66 (84)
T ss_pred ceEEEEEccCceeeeEEechHHHHHHHHHhhhheeeCCCcceeeeeeee
Confidence 4678876543 24589999999999999999888888887776654
No 149
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=24.03 E-value=68 Score=26.04 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=23.8
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEE
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVES 92 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs 92 (162)
....|.|..+.+ +.|+.|++|+.++.+++
T Consensus 71 ~~~~G~v~~i~v-~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 71 ARVAGIVAEILV-KEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccccEEEEEEc-cCCCeecCCCEEEEECC
Confidence 335677776655 89999999999999998
No 150
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=23.93 E-value=58 Score=29.19 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.2
Q ss_pred CeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 68 EVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 68 ~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
..++ ++|..|+.+.+|+|+++|-+.
T Consensus 330 ~~~~-DiP~~GtviekgePl~sviA~ 354 (389)
T COG2232 330 SWTH-DIPRPGTVIEKGEPLCSVIAS 354 (389)
T ss_pred cccc-cCCCCCcccCCCCceeeeeec
Confidence 4444 999999999999999998655
No 151
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=23.87 E-value=1.6e+02 Score=26.09 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=39.8
Q ss_pred eCCceEEEEe--CCEEEEeechhh--------------hhhcCCeeEEE------cCCCCceeecCCeEE--EEEEeccc
Q 031294 41 ASSHEWVKHE--GSVATVGITDHA--------------QDHLGEVVFVE------LPETGASVKQGGGFG--VVESVKAT 96 (162)
Q Consensus 41 s~~H~Wv~~e--~~~~~vGiTd~a--------------~~~lG~I~~v~------lp~~G~~v~~g~~l~--~IEs~K~v 96 (162)
.++-.||..+ |..+.|=+.+-- .+.=|-|+.+. +.++|+.|++||.|. .++....
T Consensus 156 ~~~i~WV~i~~~GT~l~I~v~E~~~p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~- 234 (385)
T PF06898_consen 156 FPDISWVGIEIKGTRLIIEVVEKVDPEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGD- 234 (385)
T ss_pred CCCeEEEEEEEEeeEEEEEEEEcCCCCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCC-
Confidence 3567899864 776666554432 12235555554 458899999999984 4443322
Q ss_pred ceeecccceEEEe
Q 031294 97 SDVNSPISGEVIE 109 (162)
Q Consensus 97 ~~i~sPvsG~Vv~ 109 (162)
+-..+.+|.|.+
T Consensus 235 -~~~v~A~G~V~a 246 (385)
T PF06898_consen 235 -EQEVHADGDVKA 246 (385)
T ss_pred -ceEECCcEEEEE
Confidence 222455566654
No 152
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=23.49 E-value=1e+02 Score=27.36 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 42 SSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 42 ~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
..|.|= ++-.++-=++..+-+.-|-|+.|.. +.++.|++||+|+.|...
T Consensus 39 ~~~~~T--ddAyv~~~vv~Iap~VsG~V~eV~V-~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 39 RNHPST--DDAYVRADVVPIAPQVSGRVTEVNV-KDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred ccCccc--CceEEEEEEEEEcCcCceEEEEEEe-cCCCEecCCCeEEEECcH
Confidence 345553 2234444455666778899988877 677999999999999654
No 153
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=23.47 E-value=62 Score=29.27 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=17.4
Q ss_pred CCCCceeecCCeEEEEEEe
Q 031294 75 PETGASVKQGGGFGVVESV 93 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~ 93 (162)
.++|++|++||++++|.+.
T Consensus 380 ~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 380 KKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred cCCcCEeCCCCeEEEEeCC
Confidence 6999999999999999865
No 154
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.31 E-value=2.6e+02 Score=26.55 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=36.5
Q ss_pred eEEEEeCCEEEEeechhhhhhcCCe-eEEEcCCCCceeecCCeEEEEE---Ee----cccceeecccceEEEeeccccc
Q 031294 45 EWVKHEGSVATVGITDHAQDHLGEV-VFVELPETGASVKQGGGFGVVE---SV----KATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~lG~I-~~v~lp~~G~~v~~g~~l~~IE---s~----K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
..|..+|..+.|.+...+...-|.- +++++--.-..+..-+.=...+ .. ....+|.||++|+|+++.-+..
T Consensus 466 ~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~G 544 (596)
T PRK14042 466 FDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAG 544 (596)
T ss_pred EEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCCC
Confidence 4566567777777766543333433 4455421112221111100001 11 1245799999999999975544
No 155
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=22.27 E-value=1.2e+02 Score=30.76 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=36.8
Q ss_pred EEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEE-Eecccceeeccc--ceEEEeec
Q 031294 55 TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE-SVKATSDVNSPI--SGEVIEVN 111 (162)
Q Consensus 55 ~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IE-s~K~v~~i~sPv--sG~Vv~vN 111 (162)
-=|++..+.+.=-.=.|.-..++|++|..||.+++|- ..--.+.|..|- .|+|+.+-
T Consensus 104 ~~g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~ 163 (1017)
T PRK14698 104 ARGISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIA 163 (1017)
T ss_pred cCCCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEc
Confidence 3455444443332223333358899999999999995 333366676665 79999993
No 156
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=22.24 E-value=61 Score=28.44 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=17.2
Q ss_pred cceeecccceEEEeecccccc
Q 031294 96 TSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 96 v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
-..|+||++|.|.+++-+..+
T Consensus 173 ~t~I~APfdG~V~~~~v~~G~ 193 (397)
T PRK15030 173 YTKVTSPISGRIGKSNVTEGA 193 (397)
T ss_pred CCEEEcCCCeEEeeeecCCCC
Confidence 357999999999999876554
No 157
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=22.23 E-value=29 Score=31.22 Aligned_cols=53 Identities=19% Similarity=0.457 Sum_probs=0.0
Q ss_pred eeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC--ChhhhhcCCCHHHHHHHHHHh
Q 031294 98 DVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS--SPSDLESLMDPQAYTKFCEEE 158 (162)
Q Consensus 98 ~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~--~~~~~~~Lm~~~~Y~~~~~~e 158 (162)
.--||.+|-.-.++++-+. -|+|+ |+-|+... +.-+.+.+|.++-|+-|+.+-
T Consensus 228 ~t~sptt~~~~~~dEn~La-------vPeg~-WFdkLav~vAe~y~v~TvLgpDtYD~~L~eL 282 (468)
T PF11498_consen 228 NTSSPTTGLDQQTDENTLA-------VPEGD-WFDKLAVTVAEQYNVDTVLGPDTYDTFLNEL 282 (468)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccCCCCccccccccccccc-------CCcch-HHHHHhhhhccccCcccccCccchHHHHhhh
Confidence 3456666666666555443 35665 99888754 445788999999999988763
No 158
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.88 E-value=1.1e+02 Score=26.30 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=23.3
Q ss_pred EEcC-CCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 72 VELP-ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 72 v~lp-~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
+.+| ..-..|+.|+.+- |.-.-.-..-+-++.|+|+.|.+....
T Consensus 314 ~~v~~~~~~~i~~G~~v~-v~~~~~~~~~~~~~~g~V~~i~~~~~~ 358 (423)
T TIGR01843 314 AKLSPKDIGFVHVGQPAE-IKFSAFPYRRYGILNGKVKSISPDTFT 358 (423)
T ss_pred EEEChhhhhhhCCCCceE-EEEecCCCcccCCccEEEEEECCCccc
Confidence 4454 2233577777642 211111122234689999999876543
No 159
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=21.71 E-value=93 Score=21.66 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=16.7
Q ss_pred ceEEEEeCCEEEEeechhhhhhcCCeeE
Q 031294 44 HEWVKHEGSVATVGITDHAQDHLGEVVF 71 (162)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~ 71 (162)
..|+.+ |+.+.|-+++|- ..-|+|+|
T Consensus 44 ~i~I~~-GD~V~Ve~~~~d-~~kg~I~~ 69 (75)
T COG0361 44 RIRILP-GDVVLVELSPYD-LTKGRIVY 69 (75)
T ss_pred eEEeCC-CCEEEEEecccc-cccccEEE
Confidence 355543 677788888773 55566665
No 160
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=21.44 E-value=1e+02 Score=25.20 Aligned_cols=30 Identities=33% Similarity=0.635 Sum_probs=25.3
Q ss_pred hhcCCeeEEEc-CCCCceeecCCeEEEEEEe
Q 031294 64 DHLGEVVFVEL-PETGASVKQGGGFGVVESV 93 (162)
Q Consensus 64 ~~lG~I~~v~l-p~~G~~v~~g~~l~~IEs~ 93 (162)
+..|+.+||.. |+.|+.+++|+.+..|...
T Consensus 160 D~~Gq~hyv~veP~~~~~~~~G~~VLlv~r~ 190 (202)
T PF07290_consen 160 DQFGQLHYVMVEPEAGEEFKQGTEVLLVDRF 190 (202)
T ss_pred ecCCCEEEEEEeeCCCCCCCCCCEEEEEEeh
Confidence 66889888765 7888899999999999763
No 161
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=21.44 E-value=1.4e+02 Score=25.07 Aligned_cols=47 Identities=26% Similarity=0.257 Sum_probs=30.5
Q ss_pred eEEEEeCCEEEEeechhh--hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 45 EWVKHEGSVATVGITDHA--QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a--~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.|+..++ .+.-|+.... .+.+| +....+.+.|+.+++|++++.+++.
T Consensus 30 ~~~ar~~-~v~~G~~~~~~i~~~~~-~~v~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 30 SLVAKED-GVLAGLPVARRVFEQLG-VQVEWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEecCC-EEEECHHHHHHHHHHcC-eEEEEEeCCCCEecCCCEEEEEEEc
Confidence 4544443 3446644332 34455 3433456999999999999999986
No 162
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=21.44 E-value=71 Score=29.23 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=18.7
Q ss_pred EEc-CCCCceeecCCeEEEEEEe
Q 031294 72 VEL-PETGASVKQGGGFGVVESV 93 (162)
Q Consensus 72 v~l-p~~G~~v~~g~~l~~IEs~ 93 (162)
|+| .++|++|++||++++|.+.
T Consensus 383 i~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 383 LTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred eEEccCCcCEECCCCeEEEEeCC
Confidence 444 6999999999999999854
No 163
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.25 E-value=1.4e+02 Score=25.41 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=29.5
Q ss_pred eEEEEeCCEEEEeechhhhh---hcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 45 EWVKHEGSVATVGITDHAQD---HLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~---~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.|+..++ .+.-|+ +++.. .+| +...-+.+.|+.+++|++++.+++.
T Consensus 34 ~i~ar~~-~v~~G~-~~a~~i~~~l~-~~~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 34 KIIAKSE-GVFSGE-KYALELLEMTG-IECVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEEEcCC-EEEECH-HHHHHHHHHcC-CEEEEEcCCCCEecCCCEEEEEEEC
Confidence 3443333 333564 34433 445 4444457999999999999999987
No 164
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=21.13 E-value=1.5e+02 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=28.4
Q ss_pred EEEEee--chhhhhhcCC-eeEEEcCCCCceeecCCeEEEEEEe
Q 031294 53 VATVGI--TDHAQDHLGE-VVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 53 ~~~vGi--Td~a~~~lG~-I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.+.-|+ -....+.+|. +..--+.+.|+.+++|++++.+++.
T Consensus 66 gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 66 GVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEEEEEEC
Confidence 344664 2233556674 3333457999999999999999987
No 165
>PHA02762 hypothetical protein; Provisional
Probab=20.97 E-value=74 Score=21.05 Aligned_cols=27 Identities=19% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEeechhhhhhcCCeeEEEcCCCCceeecC
Q 031294 53 VATVGITDHAQDHLGEVVFVELPETGASVKQG 84 (162)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g 84 (162)
.++||+++ -|+|.|+.+-+....++.|
T Consensus 29 fvtigide-----~g~iayisiep~dkdl~~~ 55 (62)
T PHA02762 29 FVTIGIDE-----NDKISYISIEPLDKDLKEG 55 (62)
T ss_pred EEEEeECC-----CCcEEEEEecccchHHHHh
Confidence 78999865 4799999986665555543
No 166
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.92 E-value=1.6e+02 Score=25.16 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=27.7
Q ss_pred EEEeechhh--hhhcCC-eeEEEcCCCCceeecCCeEEEEEEe
Q 031294 54 ATVGITDHA--QDHLGE-VVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 54 ~~vGiTd~a--~~~lG~-I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
+.=|+.... .+.+|. +..--+.+.|+.+++|++++.+++.
T Consensus 48 i~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 48 VIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEEEEEc
Confidence 335654432 445663 4344456999999999999999986
No 167
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=20.77 E-value=75 Score=29.09 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.5
Q ss_pred EEc-CCCCceeecCCeEEEEEEe
Q 031294 72 VEL-PETGASVKQGGGFGVVESV 93 (162)
Q Consensus 72 v~l-p~~G~~v~~g~~l~~IEs~ 93 (162)
|.| .++|++|++||++++|.+.
T Consensus 382 i~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 382 LTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred eEeccCCcCEeCCCCeEEEEECC
Confidence 344 6999999999999999854
No 168
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=20.72 E-value=1.3e+02 Score=25.15 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=55.8
Q ss_pred cccccccCCcceeeCC-ceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceE
Q 031294 28 SRCFSSVLDGLKYASS-HEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGE 106 (162)
Q Consensus 28 ~r~~~~~p~~~~Ys~~-H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~ 106 (162)
.+.|+.-|.. .++.| -.++..+.....|++...|.-..|.|+..- +.|+++++|+.++-++-.+..+ ..-|+.-+
T Consensus 143 G~~~~v~~~~-~~~~NER~~~~i~t~~g~v~~v~Vga~~v~~Iv~~~--~~~~~v~~G~~~G~~~fGs~gs-tvip~~~~ 218 (239)
T COG0688 143 GKFFSANLDK-AFTENERNSVLIETEQGKVVVVQVAGLVARRIVCYV--KEGDTVKKGERIGGIRFGSRGS-TVLPLFAE 218 (239)
T ss_pred CceeccChhh-hhcccceEEEEEEcCCCcEEEEEEhhheeeEEEEEe--cCCcEEEhhhhhhhhhhCCccc-EEEecCCC
Confidence 4555555554 34443 356666543337777788888888886532 4499999999999998885444 44444444
Q ss_pred -EEeecccccc
Q 031294 107 -VIEVNTKLTE 116 (162)
Q Consensus 107 -Vv~vN~~l~~ 116 (162)
.+.+++.+..
T Consensus 219 ~~v~~~~~v~~ 229 (239)
T COG0688 219 PRVAVGERVVA 229 (239)
T ss_pred ceeeecccccc
Confidence 4888777764
No 169
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=20.71 E-value=2.7e+02 Score=22.17 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=35.4
Q ss_pred hhhhhcCCeeEEEcCCCCceeecCCeE---EEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC
Q 031294 61 HAQDHLGEVVFVELPETGASVKQGGGF---GVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS 137 (162)
Q Consensus 61 ~a~~~lG~I~~v~lp~~G~~v~~g~~l---~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~ 137 (162)
+....-+-|+.|.||+....++.|+.= ++|.+ ||+.-..+++-+|||-++.++
T Consensus 67 ~~l~~~~GIv~i~LP~~~~~Le~gk~Y~W~~~l~C------------------------d~~~~s~~~~v~G~I~Rv~~~ 122 (189)
T PF06051_consen 67 FPLPQQPGIVSITLPEDQPPLEVGKTYRWYFSLIC------------------------DPQDRSDDIFVEGWIQRVELS 122 (189)
T ss_pred EecCCCCCEEEEECCCCCCCCCCCCeEEEEEEEEE------------------------CCCCCCCCceEEEEEEEeCCC
Confidence 333445678889998776777777652 22222 344445667888999999876
Q ss_pred C
Q 031294 138 S 138 (162)
Q Consensus 138 ~ 138 (162)
.
T Consensus 123 ~ 123 (189)
T PF06051_consen 123 P 123 (189)
T ss_pred H
Confidence 4
No 170
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=20.67 E-value=1.8e+02 Score=25.79 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=36.4
Q ss_pred EEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe-cccceeecccceEEEeec
Q 031294 54 ATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV-KATSDVNSPISGEVIEVN 111 (162)
Q Consensus 54 ~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~-K~v~~i~sPvsG~Vv~vN 111 (162)
.+|-|++-.++.+| |.... ...++.-..-+..+.|+.. .....|.++++|.|..++
T Consensus 82 ~~v~i~~~~~~~~g-V~t~~-v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~ 138 (409)
T PRK09783 82 GGVRIDPTQTQNLG-VKTAT-VTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVY 138 (409)
T ss_pred CeEEECHHHHHhcC-cEEEE-EEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEE
Confidence 35888999999998 33222 2222221122345777754 456789999999999987
No 171
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=20.57 E-value=76 Score=29.52 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.5
Q ss_pred EEc-CCCCceeecCCeEEEEEEe
Q 031294 72 VEL-PETGASVKQGGGFGVVESV 93 (162)
Q Consensus 72 v~l-p~~G~~v~~g~~l~~IEs~ 93 (162)
|+| .++|++|++||+|++|.+.
T Consensus 449 i~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 449 VELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred eEEeccCCCEecCCCeEEEEECC
Confidence 344 5999999999999999854
No 172
>PRK04350 thymidine phosphorylase; Provisional
Probab=20.42 E-value=77 Score=29.43 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.3
Q ss_pred CCCCceeecCCeEEEEEEe
Q 031294 75 PETGASVKQGGGFGVVESV 93 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~ 93 (162)
.++|++|++||+|++|.+.
T Consensus 445 ~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 445 VKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred ccCCCEecCCCeEEEEecC
Confidence 6999999999999999854
No 173
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=20.35 E-value=1.5e+02 Score=26.24 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=31.6
Q ss_pred CCceEEEEe--CCEEEEeechhh---------------hhhcCCeeEEE------cCCCCceeecCCeEEE
Q 031294 42 SSHEWVKHE--GSVATVGITDHA---------------QDHLGEVVFVE------LPETGASVKQGGGFGV 89 (162)
Q Consensus 42 ~~H~Wv~~e--~~~~~vGiTd~a---------------~~~lG~I~~v~------lp~~G~~v~~g~~l~~ 89 (162)
++=.||..+ |.++.|=+.+-- .+.=|-|..+- +.++|+.|++||.|.+
T Consensus 153 ~~i~WV~v~i~GTrl~i~v~Ek~~~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 153 PEIMWAGVRVRGTTLVIKVVEKQEPKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCcEEEEEEEEeEEEEEEEEecCCCCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 566899764 776666555431 22235565554 3588999999999865
Done!