Query 031294
Match_columns 162
No_of_seqs 141 out of 1096
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3klr_A Glycine cleavage system 100.0 2.3E-48 7.8E-53 293.5 14.6 123 37-159 2-124 (125)
2 3hgb_A Glycine cleavage system 100.0 1.2E-48 3.9E-53 304.0 11.7 127 31-157 22-155 (155)
3 3mxu_A Glycine cleavage system 100.0 4.5E-48 1.5E-52 297.5 6.4 123 34-156 21-143 (143)
4 1hpc_A H protein of the glycin 100.0 1.3E-46 4.4E-51 285.8 14.4 130 33-162 2-131 (131)
5 3tzu_A GCVH, glycine cleavage 100.0 2.6E-47 9E-52 291.6 8.7 122 32-156 8-135 (137)
6 1onl_A Glycine cleavage system 100.0 9.7E-46 3.3E-50 280.0 14.0 126 33-158 2-127 (128)
7 3a7l_A H-protein, glycine clea 100.0 1.7E-45 5.7E-50 278.7 13.7 125 33-157 2-127 (128)
8 1zko_A Glycine cleavage system 100.0 2.7E-42 9.2E-47 263.6 13.4 124 35-158 13-136 (136)
9 1gjx_A Pyruvate dehydrogenase; 98.5 1.2E-08 4.1E-13 69.3 0.6 72 58-137 7-78 (81)
10 2kcc_A Acetyl-COA carboxylase 98.3 1.1E-06 3.6E-11 60.5 5.1 69 62-139 9-77 (84)
11 1bdo_A Acetyl-COA carboxylase; 98.2 6.8E-07 2.3E-11 60.4 3.2 51 63-113 9-65 (80)
12 3crk_C Dihydrolipoyllysine-res 98.2 1.8E-06 6E-11 59.6 4.5 58 56-114 8-66 (87)
13 1ghj_A E2, E2, the dihydrolipo 98.2 9.6E-07 3.3E-11 59.6 3.0 48 66-114 15-62 (79)
14 1z6h_A Biotin/lipoyl attachmen 98.2 2.5E-06 8.5E-11 56.0 4.8 49 65-114 6-54 (72)
15 1qjo_A Dihydrolipoamide acetyl 98.2 1.8E-06 6.2E-11 58.1 4.2 55 58-114 7-61 (80)
16 1k8m_A E2 component of branche 98.1 4.7E-06 1.6E-10 58.5 5.7 77 55-139 6-83 (93)
17 2l5t_A Lipoamide acyltransfera 98.1 1.3E-06 4.4E-11 58.5 2.2 49 66-115 15-63 (77)
18 1dcz_A Transcarboxylase 1.3S s 98.1 5.7E-06 2E-10 55.0 5.4 50 63-113 13-62 (77)
19 1iyu_A E2P, dihydrolipoamide a 98.1 3.4E-06 1.2E-10 56.8 4.1 45 69-114 15-59 (79)
20 2d5d_A Methylmalonyl-COA decar 98.0 4.9E-06 1.7E-10 54.7 4.4 50 63-113 10-59 (74)
21 2dnc_A Pyruvate dehydrogenase 98.0 6.5E-06 2.2E-10 58.4 4.6 48 66-114 21-68 (98)
22 2dne_A Dihydrolipoyllysine-res 97.9 7.5E-06 2.6E-10 59.1 3.5 47 67-114 22-68 (108)
23 1y8o_B Dihydrolipoyllysine-res 97.9 1.2E-05 3.9E-10 60.2 4.5 64 67-137 42-105 (128)
24 2jku_A Propionyl-COA carboxyla 97.9 3.7E-06 1.3E-10 59.0 1.7 51 63-114 30-80 (94)
25 2k7v_A Dihydrolipoyllysine-res 97.8 1.1E-06 3.8E-11 60.3 -1.5 64 66-137 10-73 (85)
26 2ejm_A Methylcrotonoyl-COA car 97.8 1.5E-05 5.2E-10 56.2 4.2 68 64-139 20-87 (99)
27 2dn8_A Acetyl-COA carboxylase 97.8 2.2E-05 7.6E-10 55.4 4.3 68 63-139 22-89 (100)
28 1pmr_A Dihydrolipoyl succinylt 97.7 2.3E-06 8E-11 57.9 -1.4 47 67-114 17-63 (80)
29 3n6r_A Propionyl-COA carboxyla 97.6 5.3E-05 1.8E-09 69.8 5.7 49 65-114 619-667 (681)
30 3u9t_A MCC alpha, methylcroton 97.5 3.6E-05 1.2E-09 70.9 2.5 72 43-115 573-658 (675)
31 3va7_A KLLA0E08119P; carboxyla 97.2 0.00023 8E-09 69.7 4.8 50 63-113 1172-1221(1236)
32 2k32_A A; NMR {Campylobacter j 97.2 0.00023 7.8E-09 50.8 3.4 68 64-138 7-103 (116)
33 3hbl_A Pyruvate carboxylase; T 97.1 0.00031 1.1E-08 68.4 4.5 49 65-114 1084-1132(1150)
34 1zy8_K Pyruvate dehydrogenase 96.9 0.00014 4.7E-09 59.1 0.0 47 67-114 18-64 (229)
35 3dva_I Dihydrolipoyllysine-res 96.9 0.00015 5.2E-09 63.6 0.0 47 67-114 17-63 (428)
36 3bg3_A Pyruvate carboxylase, m 96.4 0.00067 2.3E-08 63.2 1.0 47 66-113 657-703 (718)
37 2qf7_A Pyruvate carboxylase pr 96.3 0.0012 4.1E-08 64.3 1.9 69 45-114 1061-1150(1165)
38 3d4r_A Domain of unknown funct 96.2 0.0069 2.3E-07 47.2 5.2 46 67-113 109-155 (169)
39 3na6_A Succinylglutamate desuc 94.7 0.053 1.8E-06 45.6 6.1 39 74-112 271-313 (331)
40 3ne5_B Cation efflux system pr 94.6 0.031 1.1E-06 48.0 4.4 55 61-115 124-226 (413)
41 3fmc_A Putative succinylglutam 94.3 0.052 1.8E-06 46.4 5.3 54 73-135 303-362 (368)
42 3cdx_A Succinylglutamatedesucc 94.0 0.079 2.7E-06 44.8 5.7 53 75-136 282-338 (354)
43 3fpp_A Macrolide-specific effl 93.9 0.037 1.2E-06 45.5 3.4 30 63-93 36-65 (341)
44 2f1m_A Acriflavine resistance 93.8 0.022 7.6E-07 45.6 1.7 30 63-93 27-56 (277)
45 3lnn_A Membrane fusion protein 93.5 0.056 1.9E-06 44.7 3.7 31 63-94 62-92 (359)
46 1vf7_A Multidrug resistance pr 92.1 0.056 1.9E-06 45.4 1.9 30 63-93 48-77 (369)
47 2qj8_A MLR6093 protein; struct 91.1 0.34 1.1E-05 40.3 5.7 40 73-112 270-313 (332)
48 4dk0_A Putative MACA; alpha-ha 89.9 0.048 1.6E-06 45.2 -0.6 31 62-93 36-66 (369)
49 1f3z_A EIIA-GLC, glucose-speci 69.9 2.8 9.4E-05 32.0 2.7 25 84-111 40-64 (161)
50 2gpr_A Glucose-permease IIA co 69.7 2 6.9E-05 32.5 1.8 25 84-111 35-59 (154)
51 1ax3_A Iiaglc, glucose permeas 67.5 2.9 9.8E-05 31.9 2.3 25 84-111 40-64 (162)
52 2auk_A DNA-directed RNA polyme 66.2 6.8 0.00023 30.3 4.3 36 75-112 66-101 (190)
53 3our_B EIIA, phosphotransferas 63.3 5.6 0.00019 31.1 3.3 15 98-112 73-87 (183)
54 2xha_A NUSG, transcription ant 56.6 9.6 0.00033 30.0 3.6 40 76-125 26-65 (193)
55 2dn8_A Acetyl-COA carboxylase 56.3 3.6 0.00012 28.1 1.0 31 84-114 5-35 (100)
56 3our_B EIIA, phosphotransferas 50.7 24 0.00084 27.4 5.0 39 53-94 103-141 (183)
57 1yw4_A Succinylglutamate desuc 49.6 2.6 9E-05 35.3 -0.8 40 76-115 280-324 (341)
58 1f3z_A EIIA-GLC, glucose-speci 46.8 40 0.0014 25.4 5.6 38 53-93 81-118 (161)
59 2bco_A Succinylglutamate desuc 46.7 6.4 0.00022 33.0 1.2 32 76-111 282-313 (350)
60 2gpr_A Glucose-permease IIA co 44.1 14 0.00046 27.8 2.5 38 53-93 76-113 (154)
61 2xhc_A Transcription antitermi 44.0 18 0.00062 30.7 3.6 31 76-112 66-96 (352)
62 1ax3_A Iiaglc, glucose permeas 34.9 19 0.00064 27.3 2.1 38 53-93 81-118 (162)
63 1m1f_A KID toxin protein; toxi 34.5 15 0.0005 25.1 1.3 41 66-106 3-48 (110)
64 2xha_A NUSG, transcription ant 30.9 19 0.00066 28.2 1.5 30 76-111 86-115 (193)
65 1ub4_A MAZF protein; toxin, an 28.5 18 0.00063 24.7 1.0 41 66-106 8-53 (110)
66 1brw_A PYNP, protein (pyrimidi 28.4 35 0.0012 29.7 3.0 25 71-95 377-402 (433)
67 2dsj_A Pyrimidine-nucleoside ( 28.2 37 0.0013 29.5 3.0 25 71-95 369-394 (423)
68 2xhc_A Transcription antitermi 28.1 25 0.00084 29.8 1.9 30 76-111 126-155 (352)
69 1uou_A Thymidine phosphorylase 27.1 43 0.0015 29.5 3.3 23 73-95 415-437 (474)
70 1ne8_A Conserved hypothetical 26.7 24 0.00081 24.2 1.3 41 66-106 6-51 (117)
71 2tpt_A Thymidine phosphorylase 24.1 36 0.0012 29.7 2.2 26 70-95 381-407 (440)
72 2dgy_A MGC11102 protein; EIF-1 23.9 24 0.0008 25.2 0.8 38 32-73 42-79 (111)
73 1o4u_A Type II quinolic acid p 21.9 93 0.0032 25.4 4.2 38 54-93 55-95 (285)
74 2f1m_A Acriflavine resistance 20.4 62 0.0021 25.0 2.8 44 86-137 13-56 (277)
No 1
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=100.00 E-value=2.3e-48 Score=293.51 Aligned_cols=123 Identities=50% Similarity=0.857 Sum_probs=120.5
Q ss_pred cceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294 37 GLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (162)
Q Consensus 37 ~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~ 116 (162)
+++||++|+||+.+|+.++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+||++|+|++||.+|.+
T Consensus 2 ~l~Yt~~HeWv~~e~~~~~vGITd~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 2 VRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CcEeCCCCEEEEEcCCEEEEeeCHHHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHhh
Q 031294 117 TPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 159 (162)
Q Consensus 117 ~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e~ 159 (162)
+|++||+|||++|||++|++++++++++||++++|+++|++.+
T Consensus 82 ~P~liN~dpy~~gWl~ki~~~~~~e~~~Ll~~~~Y~~~~~~~~ 124 (125)
T 3klr_A 82 NPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKYIKSIE 124 (125)
T ss_dssp CTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHHHH
T ss_pred ChHhhcCCCCCCceEEEEEECCHHHHHhcCCHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999998764
No 2
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=100.00 E-value=1.2e-48 Score=304.02 Aligned_cols=127 Identities=48% Similarity=0.818 Sum_probs=122.1
Q ss_pred ccccCCcceeeCCceEEEEeCC-EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEe
Q 031294 31 FSSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIE 109 (162)
Q Consensus 31 ~~~~p~~~~Ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~ 109 (162)
++.+|++++|+++|+||+.+|+ +++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+|||+|+|++
T Consensus 22 m~~~P~~l~Yt~~HeWv~~egdg~~~VGITd~Aq~~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vve 101 (155)
T 3hgb_A 22 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSE 101 (155)
T ss_dssp CCCCCTTCEECTTSEEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEE
T ss_pred cccCcccceECCCCEEEEEcCCcEEEEeeCHHHHHhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEE
Confidence 4459999999999999999876 999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCcCCCCCCCCcEEEEEeCC------hhhhhcCCCHHHHHHHHHH
Q 031294 110 VNTKLTETPGLVNSSPYEEGWLIKVKPSS------PSDLESLMDPQAYTKFCEE 157 (162)
Q Consensus 110 vN~~l~~~P~lln~dpy~~GWl~~i~~~~------~~~~~~Lm~~~~Y~~~~~~ 157 (162)
||++|.++|++||+|||++|||++|++++ ++++++||++++|+++|++
T Consensus 102 vN~~L~d~PeliN~dPyg~GWl~kik~~d~~~~~~~~el~~Ll~~~~Y~~~~~e 155 (155)
T 3hgb_A 102 VNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLTE 155 (155)
T ss_dssp ECTHHHHCTTHHHHCTTTTTCCEEEECCTTTSCCHHHHHTTSBCHHHHHHHCC-
T ss_pred EhhhhhhChHhhccCCCCCcEEEEEEECCcccccchhHHHhCCCHHHHHHHhcC
Confidence 99999999999999999999999999999 7889999999999999853
No 3
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=100.00 E-value=4.5e-48 Score=297.45 Aligned_cols=123 Identities=45% Similarity=0.790 Sum_probs=118.7
Q ss_pred cCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 34 VLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 34 ~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
.+++++|+++|+||+.+|+.++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+||++|+|++||++
T Consensus 21 ~~~~l~Yt~~HeWv~~eg~~~~VGITd~Aq~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 21 SMSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp CCCEEEECSSSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred hhccceeCCCCEEEEEcCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHH
Q 031294 114 LTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 156 (162)
Q Consensus 114 l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~ 156 (162)
|.++|++||+|||++|||++|++++++++++||++++|+++|+
T Consensus 101 L~d~PeliN~dPy~~GWl~ki~~~d~~el~~Ll~~~~Y~~~~~ 143 (143)
T 3mxu_A 101 LAESPELVNQKAETEGWLWKMTVQDETQLERLLDEAAYKELIG 143 (143)
T ss_dssp GGTCTTHHHHSTTTTTCCEEEECSCTHHHHHHHHTTSSEECC-
T ss_pred hhhChHhhhCCCCCCCeEEEEEECCHHHHHhcCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999988763
No 4
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=100.00 E-value=1.3e-46 Score=285.85 Aligned_cols=130 Identities=81% Similarity=1.282 Sum_probs=127.1
Q ss_pred ccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 33 ~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
.+|++++|+++|+||+++|+.++||||+|+|.++|+|++|++|++|++|++|++|++||++|++.+|+||++|+|++||.
T Consensus 2 ~~p~~l~Yt~~HeWv~~e~~~~~vGitd~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~ 81 (131)
T 1hpc_A 2 NVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT 81 (131)
T ss_dssp CCCTTCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred CCccccEECCCCEEEEEcCCEEEEEEehhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHhhccC
Q 031294 113 KLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 162 (162)
Q Consensus 113 ~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e~~~~ 162 (162)
+|.++|++||+|||++|||++|++++++++++||++++|+++|++++++|
T Consensus 82 ~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~~~~~~ 131 (131)
T 1hpc_A 82 GLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 131 (131)
T ss_dssp HHHHCTTHHHHCTTTTTCCEEEEESSGGGGGGSBCHHHHHHHHHHHHHCC
T ss_pred hhhcChhhhccCCCCCceEEEEEECCHHHHHhcCCHHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999988765
No 5
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=100.00 E-value=2.6e-47 Score=291.58 Aligned_cols=122 Identities=36% Similarity=0.688 Sum_probs=117.2
Q ss_pred cccCCcceeeCCceEEE------EeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccce
Q 031294 32 SSVLDGLKYASSHEWVK------HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISG 105 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~------~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG 105 (162)
+.+|++++|+++|+||+ .+|++++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+||++|
T Consensus 8 ~~~P~~l~Yt~~HeWv~~~~~~~~e~~~~~VGITd~Aq~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG 87 (137)
T 3tzu_A 8 RKIPGDRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASG 87 (137)
T ss_dssp --CCTTSEECTTSEEESCCTTCCCCSSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEE
T ss_pred ccCCccceeCCCCEEEEccCcccccCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcce
Confidence 45799999999999999 678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHH
Q 031294 106 EVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCE 156 (162)
Q Consensus 106 ~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~ 156 (162)
+|++||++|.++|++||+|||++|||++|+++ ++++||++++|+++|+
T Consensus 88 ~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~---e~~~Ll~~~~Y~~~~~ 135 (137)
T 3tzu_A 88 QIVEVNTAAVDDPATIATDPYGAGWLYSVQPT---AVGELLTASEYAGQNG 135 (137)
T ss_dssp EEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE---EECCCBCHHHHHHHTT
T ss_pred EEEEehhhhhcChhhhcCCCCcCCcEEEEEeh---hhhhCCCHHHHHHHhc
Confidence 99999999999999999999999999999998 7899999999999986
No 6
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=100.00 E-value=9.7e-46 Score=280.01 Aligned_cols=126 Identities=48% Similarity=0.841 Sum_probs=123.1
Q ss_pred ccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 33 ~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
.+|++++|+++|+||+.+|+.++||||+|+|.++|+|+||++|++|++|++|++|++|||+|++.+|+||++|+|+++|.
T Consensus 2 ~~p~~l~yt~~heWv~~~~~~~~vGit~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~ 81 (128)
T 1onl_A 2 DIPKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL 81 (128)
T ss_dssp CCCSSSEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred CCCcccEECCCcEEEEecCCEEEEEeehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHh
Q 031294 113 KLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 158 (162)
Q Consensus 113 ~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e 158 (162)
+|.++|++||+|||++|||++|++++++++++||++++|+++|+++
T Consensus 82 ~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~~ 127 (128)
T 1onl_A 82 ALEKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAGGYQEVLESE 127 (128)
T ss_dssp HHHHCTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHHT
T ss_pred hhccChhhhccCCCCCccEEEEEECCHHHHHhcCCHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999864
No 7
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=100.00 E-value=1.7e-45 Score=278.73 Aligned_cols=125 Identities=51% Similarity=0.901 Sum_probs=121.8
Q ss_pred ccCCcceeeCCceEEEEeCC-EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 33 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 33 ~~p~~~~Ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
.+|++++|+++|+||+.+++ .++||||+|+|.++|+|+||++|++|++|++|++|++|||+|++.+|+||++|+|+++|
T Consensus 2 ~~p~~l~yt~~heWv~~~~~g~~~vGitd~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN 81 (128)
T 3a7l_A 2 NVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVN 81 (128)
T ss_dssp CCCTTCEECTTSEEEEECTTSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCcccceEcCCcEEEEECCCcEEEEEEehHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEh
Confidence 57999999999999999866 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHH
Q 031294 112 TKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 157 (162)
Q Consensus 112 ~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~ 157 (162)
.+|.++|++||+|||++|||++|++++++++++||++++|+++|++
T Consensus 82 ~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~ 127 (128)
T 3a7l_A 82 DALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLED 127 (128)
T ss_dssp GGGGTCTTHHHHCTTTTTCCEEEEESCGGGGGGCBCHHHHHHHHHT
T ss_pred hhhccChHHhccCCCCCccEEEEEECCHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999975
No 8
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=100.00 E-value=2.7e-42 Score=263.63 Aligned_cols=124 Identities=52% Similarity=0.900 Sum_probs=120.0
Q ss_pred CCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 35 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 35 p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.++++|+++|+||+.+|+.++||||+|+|.++|+|++|++|++|++|++|++|++||++|++.+|+||++|+|+++|.+|
T Consensus 13 ~~~~~yt~~HeWv~~e~~~~~vGit~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l 92 (136)
T 1zko_A 13 LKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKL 92 (136)
T ss_dssp CEEEEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGG
T ss_pred cccceeCCCCEEEEecCCEEEEeeEhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHh
Q 031294 115 TETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 158 (162)
Q Consensus 115 ~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e 158 (162)
.++|+++|+|||++|||++|++++++++++||++++|.++|+++
T Consensus 93 ~~~p~~Vn~dp~g~GwL~~i~~~~~~~~~~Ll~~~~Y~~~~~~~ 136 (136)
T 1zko_A 93 DTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 136 (136)
T ss_dssp GTCTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHC-
T ss_pred ccCccCcccCCCCCeEEEEEEECCHHHHHhCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999754
No 9
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=98.54 E-value=1.2e-08 Score=69.29 Aligned_cols=72 Identities=25% Similarity=0.390 Sum_probs=58.0
Q ss_pred echhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC
Q 031294 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS 137 (162)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~ 137 (162)
+.+.+....|.|..+.+ +.|+.|++||+|+.+|+.|...+|+||++|+|.++|-...+. + ....||++|.+.
T Consensus 7 ~p~~g~~~~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~---v----~~g~~l~~i~~~ 78 (81)
T 1gjx_A 7 VPDIGGHENVDIIAVEV-NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK---I----SEGGLIVVVEAE 78 (81)
T ss_dssp CCCCSSCSSEEEEEECC-CSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE---E----CSSSCCCEECCS
T ss_pred cCCCCCCCcEEEEEEEc-CCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE---e----CCCCEEEEEEec
Confidence 44455567788888877 899999999999999999999999999999999998766432 2 223589888753
No 10
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=98.27 E-value=1.1e-06 Score=60.50 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=54.3
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCCh
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSP 139 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~ 139 (162)
....-|.|..+.+ +.|+.|++||+|+.||+.|...+|+||++|+|.+++ ...+ .+.. |. =|+.|...++
T Consensus 9 ~a~~~G~v~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~---~V~~---G~-~l~~i~~~~~ 77 (84)
T 2kcc_A 9 RSPSAGKLTQYTV-EDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA---VLEA---GC-VVARLELDDL 77 (84)
T ss_dssp CCSSSCCEEEESS-CTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC---CCCT---TC-CCEEEECSCS
T ss_pred ECCCCEEEEEEEC-CCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC---EECC---CC-EEEEEeCCCh
Confidence 3556788888765 789999999999999999999999999999999998 5432 2322 32 3777776665
No 11
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.22 E-value=6.8e-07 Score=60.36 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=43.0
Q ss_pred hhhcCCeeEEE------cCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 63 QDHLGEVVFVE------LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 63 ~~~lG~I~~v~------lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
....|.|..+. +.+.|+.+++||.++.||+.|...+|+||++|+|.++|-.
T Consensus 9 a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~ 65 (80)
T 1bdo_A 9 SPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVE 65 (80)
T ss_dssp CSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSC
T ss_pred cCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcC
Confidence 34556665542 5689999999999999999999999999999999999744
No 12
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=98.17 E-value=1.8e-06 Score=59.59 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=44.6
Q ss_pred Eeechhhhhh-cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 56 VGITDHAQDH-LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 56 vGiTd~a~~~-lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.+-+.+... -|.|..+. .+.|+.|++||+|+.||++|+..+|.||.+|+|.+++-..
T Consensus 8 i~~P~lg~~~~~G~v~~~~-v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 66 (87)
T 3crk_C 8 VLLPALSPTMTMGTVQRWE-KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66 (87)
T ss_dssp EECCCSSTTCCEEEEEEEC-SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred EeCCCCCCCCCcEEEEEEE-cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECC
Confidence 3344443332 35555543 4789999999999999999999999999999999987543
No 13
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=98.16 E-value=9.6e-07 Score=59.55 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=41.3
Q ss_pred cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 66 lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
-|.|..+.+ +.|+.|++||+|+.+|+.|...+|.||++|+|.++|-..
T Consensus 15 ~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 62 (79)
T 1ghj_A 15 DGTVATWHK-KPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62 (79)
T ss_dssp CEEECCCSS-CTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCT
T ss_pred CEEEEEEEc-CCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCC
Confidence 355555544 789999999999999999999999999999999997654
No 14
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=98.15 E-value=2.5e-06 Score=56.04 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=41.7
Q ss_pred hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 65 HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 65 ~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
.-|.|..+.+ +.|+.|++||+|+.||+.|...+|+||++|+|.+++-..
T Consensus 6 ~~G~v~~~~v-~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~ 54 (72)
T 1z6h_A 6 MAGNLWKVHV-KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE 54 (72)
T ss_dssp SSEEEEEECC-CTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCT
T ss_pred ccEEEEEEEc-CCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCC
Confidence 4466666644 789999999999999999999999999999999987443
No 15
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=98.15 E-value=1.8e-06 Score=58.11 Aligned_cols=55 Identities=29% Similarity=0.351 Sum_probs=44.8
Q ss_pred echhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
+.+.+.. -|.|..+.+ +.|+.+++||+|+.||+.|...+|+||++|+|.+++-..
T Consensus 7 ~p~~g~~-~G~v~~~~v-~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~ 61 (80)
T 1qjo_A 7 VPDIGGD-EVEVTEVMV-KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNV 61 (80)
T ss_dssp CCCCSSS-CEEEEECCC-CTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCT
T ss_pred CCCCCCC-CEEEEEEEc-CCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCC
Confidence 3333433 566666544 799999999999999999999999999999999997554
No 16
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=98.10 E-value=4.7e-06 Score=58.46 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=54.4
Q ss_pred EEeechhhhhh-cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEE
Q 031294 55 TVGITDHAQDH-LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIK 133 (162)
Q Consensus 55 ~vGiTd~a~~~-lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~ 133 (162)
.|.+.+.+... -|.|..+. .++|+.|++||+|+.||+.|...+|.||.+|+|.+++-...+ .+. .|. =|+.
T Consensus 6 ~i~~P~lg~~~~~G~v~~~~-v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~---~V~---~G~-~l~~ 77 (93)
T 1k8m_A 6 QFKLSDIGEGIREVTVKEWY-VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD---IAY---VGK-PLVD 77 (93)
T ss_dssp EEECCSSCTTSCCEEEEEEC-CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC---EEC---TTS-EEEE
T ss_pred EEEcCCCCCCCCCEEEEEEE-cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC---EeC---CCC-EEEE
Confidence 34444444332 35555544 478999999999999999999999999999999999765432 232 233 3777
Q ss_pred EEeCCh
Q 031294 134 VKPSSP 139 (162)
Q Consensus 134 i~~~~~ 139 (162)
|.....
T Consensus 78 i~~~~~ 83 (93)
T 1k8m_A 78 IETEAL 83 (93)
T ss_dssp EECSCC
T ss_pred EecCCC
Confidence 776543
No 17
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=98.08 E-value=1.3e-06 Score=58.52 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=41.8
Q ss_pred cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccc
Q 031294 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 66 lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
-|.|..+.+ +.|+.|++||+++.+|+.|...+|+||++|+|.++|-...
T Consensus 15 ~G~v~~~~v-~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 63 (77)
T 2l5t_A 15 EGEIVRWDV-KEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63 (77)
T ss_dssp CEEEEECSC-CTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTT
T ss_pred cEEEEEEEe-CCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCc
Confidence 355665544 7899999999999999999999999999999999976543
No 18
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.07 E-value=5.7e-06 Score=55.02 Aligned_cols=50 Identities=30% Similarity=0.442 Sum_probs=42.7
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
...-|.|..+.+ +.|+.|++|++|+.|++.|....++||++|+|..+|-.
T Consensus 13 a~~~G~v~~~~v-~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~ 62 (77)
T 1dcz_A 13 APLAGTVSKILV-KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62 (77)
T ss_dssp BSSSCEEEEECC-CTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCC
T ss_pred CCCCEEEEEEEc-CCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecC
Confidence 345577766644 78999999999999999999999999999999998743
No 19
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=98.06 E-value=3.4e-06 Score=56.78 Aligned_cols=45 Identities=38% Similarity=0.464 Sum_probs=39.0
Q ss_pred eeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 69 VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 69 I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|..+. .+.|+.|++||+|+.+|+.|...+|+||++|+|.++|-..
T Consensus 15 i~~~~-v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~ 59 (79)
T 1iyu_A 15 VIELL-VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59 (79)
T ss_dssp EEEEC-CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCT
T ss_pred EEEEe-cCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCC
Confidence 44433 3799999999999999999999999999999999997544
No 20
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.03 E-value=4.9e-06 Score=54.66 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=41.8
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
...-|.|..+.+ +.|+.+++||+|+.+++.+....++||++|+|.++|-.
T Consensus 10 a~~~G~v~~~~v-~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~ 59 (74)
T 2d5d_A 10 APMPGKVLRVLV-RVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVK 59 (74)
T ss_dssp CSSCEEEEEECC-CTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCC
T ss_pred cCCCEEEEEEEc-CCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcC
Confidence 344566655544 79999999999999999999999999999999998743
No 21
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=6.5e-06 Score=58.37 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=41.3
Q ss_pred cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 66 lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
-|.|..+.. ++|+.|++||+|+.||++|...+|.||.+|+|.+++-..
T Consensus 21 ~G~i~~~~v-~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~ 68 (98)
T 2dnc_A 21 EGNIVKWLK-KEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68 (98)
T ss_dssp EECEEEESS-CTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCT
T ss_pred cEEEEEEEc-CCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCC
Confidence 466666544 789999999999999999999999999999999986543
No 22
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=97.89 E-value=7.5e-06 Score=59.13 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=39.6
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|..+. .++|+.|++||+|+.||++|...+|.||.+|+|.+++-..
T Consensus 22 G~v~~~~-v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~ 68 (108)
T 2dne_A 22 GTIARWE-KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68 (108)
T ss_dssp EEEEECS-SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCT
T ss_pred EEEEEEE-cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCC
Confidence 4454443 4789999999999999999999999999999999986443
No 23
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=97.88 E-value=1.2e-05 Score=60.17 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS 137 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~ 137 (162)
|.|..+. .++|+.|++||+|+.||++|...+|.||.+|+|.+++-...++ .+. .++ =|+.|...
T Consensus 42 G~V~~~~-V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~--~V~---~G~-~L~~i~~~ 105 (128)
T 1y8o_B 42 GTVQRWE-KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR--DVP---LGT-PLCIIVEK 105 (128)
T ss_dssp EEEEEEC-SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCC--SEE---TTC-EEEEEESS
T ss_pred EEEEEEe-cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCe--eec---CCC-EEEEEecC
Confidence 5565553 4789999999999999999999999999999999986543220 232 233 37777643
No 24
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=97.88 E-value=3.7e-06 Score=58.97 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=24.4
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
...-|.|..+.+ +.|+.|++||+|+.||+.|...+|+||++|+|.+++-..
T Consensus 30 a~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~ 80 (94)
T 2jku_A 30 SPMPGVVVAVSV-KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA 80 (94)
T ss_dssp CSSSCEEEEECC-CTTCCCCTTCCCEEEEC----------------------
T ss_pred CCCCEEEEEEEC-CCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCC
Confidence 445688877755 789999999999999999999999999999999987543
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=97.84 E-value=1.1e-06 Score=60.29 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=50.8
Q ss_pred cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC
Q 031294 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS 137 (162)
Q Consensus 66 lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~ 137 (162)
+|.|..+.+ +.|+.|++||+|+.||+.|...+|+||++|+|.++|-...+ .++. | .=|+.|...
T Consensus 10 ~G~v~~~~v-~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~---~V~~---G-~~l~~i~~~ 73 (85)
T 2k7v_A 10 IVEVTEVMV-KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD---KVKT---G-SLIMIFEVE 73 (85)
T ss_dssp CCCCCSCCC-SSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC---CBCT---T-SEEEEEECC
T ss_pred eEEEEEEEc-CCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC---EECC---C-CEEEEEEcC
Confidence 388877754 79999999999999999999999999999999999876543 3332 2 246777654
No 26
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=97.83 E-value=1.5e-05 Score=56.20 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=51.6
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCCh
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSP 139 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~ 139 (162)
..-|.|..+.+ +.|+.|++||+|+.|++.|...+|+||++|+|..++-...+ .++ .+ ..|+.|...+.
T Consensus 20 ~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~---~V~---~G-~~L~~i~~~~~ 87 (99)
T 2ejm_A 20 PMTGTIEKVFV-KAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA---QAN---RH-TPLVEFEEEES 87 (99)
T ss_dssp SSSEEEEEECC-CTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE---EEC---TT-CBCEEECCCCS
T ss_pred CCCEEEEEEEC-CCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC---EEC---CC-CEEEEEECCCc
Confidence 34566666544 78999999999999999999999999999999998754432 332 23 37888876543
No 27
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.2e-05 Score=55.36 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=51.8
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeCCh
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSP 139 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~~~ 139 (162)
...-|.|..+. .+.|+.|++||+|+.+|+.|...+|+||++|+|. ++-. .-+.++. + ..|+.|...++
T Consensus 22 a~~~G~v~~~~-v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~---~G~~V~~---G-~~l~~i~~~~~ 89 (100)
T 2dn8_A 22 SPSAGKLTQYT-VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKR---PGAVLEA---G-CVVARLELDDP 89 (100)
T ss_dssp CSSCEEEEEES-SCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSC---TTCEECS---S-CEEEEECCSCS
T ss_pred CCCCEEEEEEE-cCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeC---CCCEECC---C-CEEEEEEcCCc
Confidence 45566666654 4789999999999999999999999999999999 7642 2334432 3 37888876554
No 28
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=97.73 E-value=2.3e-06 Score=57.91 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|..+. .++|+.|++||+|+.||+.|...+|.||++|+|.+++-..
T Consensus 17 G~v~~~~-v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 63 (80)
T 1pmr_A 17 ATVATWH-KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63 (80)
T ss_dssp EECCBCC-CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCT
T ss_pred EEEEEEE-CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCC
Confidence 4444433 3789999999999999999999999999999999987544
No 29
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.63 E-value=5.3e-05 Score=69.83 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=41.8
Q ss_pred hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 65 HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 65 ~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
+-|.|+.+. .++|++|++||+|++||++|+..+|.||.+|+|.+++-+.
T Consensus 619 ~~G~v~~~~-v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~ 667 (681)
T 3n6r_A 619 MPGLIVKVD-VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASA 667 (681)
T ss_dssp SCEEEEEEC-CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCT
T ss_pred CcEEEEEEE-eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCC
Confidence 456665543 4899999999999999999999999999999999996543
No 30
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.49 E-value=3.6e-05 Score=70.86 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=9.8
Q ss_pred CceEEEEeCCEEEEeech--------------hhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEE
Q 031294 43 SHEWVKHEGSVATVGITD--------------HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVI 108 (162)
Q Consensus 43 ~H~Wv~~e~~~~~vGiTd--------------~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv 108 (162)
++.||...|..+++-..+ ....+-|.|+.+. .++|+.|++||+++.||++|+..+|.||.+|+|.
T Consensus 573 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~-v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~ 651 (675)
T 3u9t_A 573 RQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVL-VEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVK 651 (675)
T ss_dssp TEEEEECSSSEEEEEECCHHHHHC--------------------------------------------------------
T ss_pred CEEEEEECCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEEE-eCCCCEEcCCCEEEEEEecceeEEEECCCCeEEE
Confidence 456666556656555432 2344678877664 4899999999999999999999999999999999
Q ss_pred eeccccc
Q 031294 109 EVNTKLT 115 (162)
Q Consensus 109 ~vN~~l~ 115 (162)
+++-+..
T Consensus 652 ~i~~~~G 658 (675)
T 3u9t_A 652 ALYCSEG 658 (675)
T ss_dssp -------
T ss_pred EEEeCCc
Confidence 9865433
No 31
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.22 E-value=0.00023 Score=69.71 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=43.8
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
..+.|.|+.+. .++|+.|++||+|+.||++|+..+|.||++|+|.+++-+
T Consensus 1172 ap~~G~v~~~~-v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~ 1221 (1236)
T 3va7_A 1172 SEYTGRFWKPV-AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHK 1221 (1236)
T ss_dssp CSSCEEEEEES-SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCC
T ss_pred CCCcEEEEEEE-cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeC
Confidence 45668887654 599999999999999999999999999999999999644
No 32
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=97.20 E-value=0.00023 Score=50.84 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=48.2
Q ss_pred hhcCCeeEEEcCCCCceeecCCeEEEEEEecccc-----------------------------eeecccceEEEeecccc
Q 031294 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKATS-----------------------------DVNSPISGEVIEVNTKL 114 (162)
Q Consensus 64 ~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~-----------------------------~i~sPvsG~Vv~vN~~l 114 (162)
..-|.|..+.+ +.|+.|++||+|+.|++.+... .|+||++|.|..++-..
T Consensus 7 ~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~ 85 (116)
T 2k32_A 7 QVSGVIVNKLF-KAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNI 85 (116)
T ss_dssp SSCEEEEEECS-CTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCT
T ss_pred cCCEEEEEEEC-CCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCC
Confidence 34567766644 7899999999999999885543 89999999999986543
Q ss_pred ccCCCCcCCCCCCCCcEEEEEeCC
Q 031294 115 TETPGLVNSSPYEEGWLIKVKPSS 138 (162)
Q Consensus 115 ~~~P~lln~dpy~~GWl~~i~~~~ 138 (162)
. +.++. |..-|+.|...+
T Consensus 86 G---~~v~~---g~~~l~~i~~~~ 103 (116)
T 2k32_A 86 G---DYVSA---STTELVRVTNLN 103 (116)
T ss_dssp T---CEECT---TTSCCEEEECSC
T ss_pred C---CEEcC---CCcEEEEEECCC
Confidence 2 23332 212577776544
No 33
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.12 E-value=0.00031 Score=68.35 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=41.9
Q ss_pred hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 65 HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 65 ~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
+-|.|+.+. .++|+.|++||+|++||++|+..+|.||++|+|.+++-+-
T Consensus 1084 ~~G~v~~~~-v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~ 1132 (1150)
T 3hbl_A 1084 MPGSVTEVK-VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNN 1132 (1150)
T ss_dssp SSEEEEEEC-CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCT
T ss_pred ceEEEEEEE-eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCC
Confidence 456665553 4899999999999999999999999999999999996543
No 34
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=96.92 E-value=0.00014 Score=59.07 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|+.+.. ++|+.|++||+|+.||++|...+|.+|.+|+|.+++-..
T Consensus 18 G~I~~w~v-k~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~ 64 (229)
T 1zy8_K 18 GNIVKWLK-KEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64 (229)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEEec-CCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecC
Confidence 55655543 789999999999999999999999999999998775443
No 35
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=96.89 E-value=0.00015 Score=63.63 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|.|+.+. .++|+.|++||+|+.||++|...+|.||.+|+|.++.-.-
T Consensus 17 g~i~~w~-v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~ 63 (428)
T 3dva_I 17 GEIVKWF-VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63 (428)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEEE-cCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCC
Confidence 4555443 4899999999999999999999999999999998876543
No 36
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=96.44 E-value=0.00067 Score=63.20 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=39.8
Q ss_pred cCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeeccc
Q 031294 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 66 lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~ 113 (162)
-|.|+.+. .++|+.|++||++++||++|+..+|.||.+|+|.+++-+
T Consensus 657 ~G~V~~v~-V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~ 703 (718)
T 3bg3_A 657 PGKVIDIK-VVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVT 703 (718)
T ss_dssp CEEEEEEC-SCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCC
T ss_pred CeEEEEEE-eCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecC
Confidence 45555543 378999999999999999999999999999999988644
No 37
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=96.31 E-value=0.0012 Score=64.32 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=45.8
Q ss_pred eEEEEeCCEEEEeechhhhh---------------------hcCCeeEEEcCCCCceeecCCeEEEEEEecccceeeccc
Q 031294 45 EWVKHEGSVATVGITDHAQD---------------------HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPI 103 (162)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~---------------------~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPv 103 (162)
..+.++|..+.|.+.+-... +-|.|..+. .++|+.|++||++++||++|+..+|.||.
T Consensus 1061 ~~~evnG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~-v~~Gd~V~~G~~l~~iEamKme~~i~Ap~ 1139 (1165)
T 2qf7_A 1061 VFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVF-VSSGQAVNAGDVLVSIEAMKMETAIHAEK 1139 (1165)
T ss_dssp EEEEETTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEEC-CSSCCCC---CEEEEEEC---CEEEECCS
T ss_pred EEEEECCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEE-cCCcCEeCCCCEEEEEEcccceEEEEcCC
Confidence 45666677777777654321 123344333 47899999999999999999999999999
Q ss_pred ceEEEeecccc
Q 031294 104 SGEVIEVNTKL 114 (162)
Q Consensus 104 sG~Vv~vN~~l 114 (162)
+|+|.+++-..
T Consensus 1140 ~G~V~~i~v~~ 1150 (1165)
T 2qf7_A 1140 DGTIAEVLVKA 1150 (1165)
T ss_dssp SCCCCEECCCS
T ss_pred CEEEEEEEeCC
Confidence 99999986543
No 38
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=96.17 E-value=0.0069 Score=47.16 Aligned_cols=46 Identities=37% Similarity=0.447 Sum_probs=38.4
Q ss_pred CCeeEEEcCCCCceeecCCeEEEEEEecc-cceeecccceEEEeeccc
Q 031294 67 GEVVFVELPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTK 113 (162)
Q Consensus 67 G~I~~v~lp~~G~~v~~g~~l~~IEs~K~-v~~i~sPvsG~Vv~vN~~ 113 (162)
|-.+++ ....|+.|.+|+.++.|.+.|. +.-++||++|+|+.+|+-
T Consensus 109 G~~V~~-i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 109 GYKVYP-IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp SSEEEE-CCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred ceEEEE-EcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 444443 3588999999999999999987 777999999999999865
No 39
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.71 E-value=0.053 Score=45.61 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=34.7
Q ss_pred cCCCCceeecCCeEEEEEEe----cccceeecccceEEEeecc
Q 031294 74 LPETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 74 lp~~G~~v~~g~~l~~IEs~----K~v~~i~sPvsG~Vv~vN~ 112 (162)
..+.|+.|++||.|+.|++. ....+++||.+|.|+..+.
T Consensus 271 ~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~ 313 (331)
T 3na6_A 271 MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF 313 (331)
T ss_dssp SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC
T ss_pred cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC
Confidence 46899999999999999984 4578999999999999875
No 40
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.56 E-value=0.031 Score=47.97 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=42.6
Q ss_pred hhhhhcCCeeEEEcCCCCceeecCCeEEEEEEec----------------------------------------------
Q 031294 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVK---------------------------------------------- 94 (162)
Q Consensus 61 ~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K---------------------------------------------- 94 (162)
.....-|.|..+.+.+.|+.|++||+|+.|++..
T Consensus 124 v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~ 203 (413)
T 3ne5_B 124 VQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQK 203 (413)
T ss_dssp ECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTS
T ss_pred EecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3445568887777558999999999999999531
Q ss_pred --ccceeecccceEEEeeccccc
Q 031294 95 --ATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 95 --~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
.-..|+||++|.|.++|-...
T Consensus 204 ~~~~~~I~AP~~G~V~~~~v~~G 226 (413)
T 3ne5_B 204 IQTRFTLKAPIDGVITAFDLRAG 226 (413)
T ss_dssp CCCEEEEECSSSEEEEECCCCTT
T ss_pred ccccEEEEcCCCeEEEEEEcCCC
Confidence 134799999999999986543
No 41
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.32 E-value=0.052 Score=46.43 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=42.7
Q ss_pred EcCCCCceeecCCeEEEEEE------ecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEE
Q 031294 73 ELPETGASVKQGGGFGVVES------VKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVK 135 (162)
Q Consensus 73 ~lp~~G~~v~~g~~l~~IEs------~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~ 135 (162)
-..+.|+.|++||.|+.|.. .....+++||.+|.|+..+..-. ++. | .++++|-
T Consensus 303 ~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~-----V~~---G-~~l~~i~ 362 (368)
T 3fmc_A 303 YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASAS-----VHQ---G-TELYKVM 362 (368)
T ss_dssp ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSE-----ECT---T-CEEEEEE
T ss_pred EeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCc-----cCC---C-CEEEEEe
Confidence 34589999999999999999 45778999999999999976532 322 3 4787775
No 42
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=93.98 E-value=0.079 Score=44.77 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=41.3
Q ss_pred CCCCceeecCCeEEEEEE----ecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEe
Q 031294 75 PETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKP 136 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs----~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~ 136 (162)
.+.|+.|++||+|+.|++ .+...+++||.+|.|+..+.. ..++. |+ .+++|--
T Consensus 282 ~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~~-----~~V~~---Gd-~l~~ia~ 338 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGP-----GRVTR---GD-AVAVVME 338 (354)
T ss_dssp CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECS-----SEECT---TC-EEEEEEE
T ss_pred CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeCC-----CccCC---CC-EEEEEee
Confidence 468999999999999998 477899999999999988632 23332 33 7777753
No 43
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=93.91 E-value=0.037 Score=45.53 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=24.7
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
...-|.|..+.+ +.|+.|++||+|+.+++.
T Consensus 36 ~~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 36 AQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp CSSCEEEEEECC-CTTCEECTTCEEEEECCH
T ss_pred ccCCcEEEEEEe-CCCCEECCCCEEEEEChH
Confidence 445688877765 789999999999999875
No 44
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=93.75 E-value=0.022 Score=45.58 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=24.7
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
...-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 27 a~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 27 PQVSGIILKRNF-KEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp CSSCEEEEEECS-CTTCEECTTSCSEEECCH
T ss_pred ccccEEEEEEEc-CCCCEecCCCEEEEECcH
Confidence 455688887754 899999999999999874
No 45
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=93.45 E-value=0.056 Score=44.73 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=24.8
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEec
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K 94 (162)
...-|.|..+.+ +.|+.|++||+|+.|++..
T Consensus 62 ~~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 62 PPLAGRIVSLNK-QLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp CSSCEEEEECCS-CTTCEECTTCEEEEEECSS
T ss_pred ccCCEEEEEEEc-CCCCEEcCCCEEEEEChHH
Confidence 455677777654 7899999999999999763
No 46
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=92.06 E-value=0.056 Score=45.41 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=24.1
Q ss_pred hhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 63 ~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
...-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 48 a~v~G~V~~v~v-~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 48 PQVNGIILKRLF-KEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp CSSCEEEEECCS-CSSEEECTTSEEEEECCH
T ss_pred eeCceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence 455677776644 889999999999999864
No 47
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=91.10 E-value=0.34 Score=40.35 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=34.7
Q ss_pred EcCCCCceeecCCeEEEEEE----ecccceeecccceEEEeecc
Q 031294 73 ELPETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 73 ~lp~~G~~v~~g~~l~~IEs----~K~v~~i~sPvsG~Vv~vN~ 112 (162)
...+.|+.|++|+.|+.+.. .....+++||.+|.|+..+.
T Consensus 270 ~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 270 PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEEC
T ss_pred EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeC
Confidence 44568999999999999977 56778999999999999974
No 48
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=89.85 E-value=0.048 Score=45.21 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=25.3
Q ss_pred hhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 62 a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
....-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 36 ~~~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 36 GAQVSGKITKLYV-KLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCCSCSBCCEECC-CTTSCCCSSCCCEECCCH
T ss_pred ecCCCcEEEEEEE-CCCCEECCCCEEEEEcCH
Confidence 3445688887765 689999999999999875
No 49
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=69.87 E-value=2.8 Score=32.00 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=18.7
Q ss_pred CCeEEEEEEecccceeecccceEEEeec
Q 031294 84 GGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 84 g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
|+-++...+. ..++||++|+|..+-
T Consensus 40 G~Giai~p~~---~~v~AP~~G~V~~v~ 64 (161)
T 1f3z_A 40 GDGIAIKPTG---NKMVAPVDGTIGKIF 64 (161)
T ss_dssp CEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred eCeEEEEeCC---CcEECCCCeEEEEEc
Confidence 5555555543 578999999999995
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=69.66 E-value=2 Score=32.49 Aligned_cols=25 Identities=28% Similarity=0.678 Sum_probs=17.8
Q ss_pred CCeEEEEEEecccceeecccceEEEeec
Q 031294 84 GGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 84 g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
|+-++...+. ..++||++|+|..+-
T Consensus 35 G~Giai~p~~---~~v~AP~~G~V~~v~ 59 (154)
T 2gpr_A 35 GDGFAINPKS---NDFHAPVSGKLVTAF 59 (154)
T ss_dssp CEEEEEEESS---SEEECSSCEEEEECC
T ss_pred eCeEEEEeCC---CcEECCCCeEEEEEc
Confidence 4444444443 579999999999985
No 51
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=67.49 E-value=2.9 Score=31.91 Aligned_cols=25 Identities=36% Similarity=0.703 Sum_probs=17.8
Q ss_pred CCeEEEEEEecccceeecccceEEEeec
Q 031294 84 GGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 84 g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
|+-++...+ ...++||++|+|..+-
T Consensus 40 G~Giai~p~---~~~v~AP~~G~V~~v~ 64 (162)
T 1ax3_A 40 GDGFAILPS---EGIVVSPVRGKILNVF 64 (162)
T ss_dssp SEEEEEEEC---SSEEEESCCEEEEECC
T ss_pred eceEEEEeC---CCcEECCCCeEEEEEc
Confidence 444444444 3578999999999984
No 52
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=66.21 E-value=6.8 Score=30.35 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=31.0
Q ss_pred CCCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 75 p~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
.+.|+.|++|+.|+. .......|.+.++|+|.-.|-
T Consensus 66 V~dG~~V~~G~~lae--wDp~t~pIisE~~G~V~f~di 101 (190)
T 2auk_A 66 KGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDM 101 (190)
T ss_dssp SCTTCEECTTCEEEE--CCSSEEEEECSSCEEEEEESC
T ss_pred ecCCCEEcCCCEEEE--EcCcCCcEEeccccEEEEEec
Confidence 378999999999984 467889999999999988764
No 53
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=63.34 E-value=5.6 Score=31.06 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=13.2
Q ss_pred eeecccceEEEeecc
Q 031294 98 DVNSPISGEVIEVNT 112 (162)
Q Consensus 98 ~i~sPvsG~Vv~vN~ 112 (162)
.++||++|+|+.+-+
T Consensus 73 ~v~AP~dG~V~~vfp 87 (183)
T 3our_B 73 KMVAPVNGTIGKIFE 87 (183)
T ss_dssp EEECSSSEEEEEECT
T ss_pred EEEeCCCeEEEEECC
Confidence 689999999999854
No 54
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=56.62 E-value=9.6 Score=29.96 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=30.7
Q ss_pred CCCceeecCCeEEEEEEecccceeecccceEEEeeccccccCCCCcCCCC
Q 031294 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSP 125 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dp 125 (162)
+.|+.|++|+.|+... .|.+-++|+|++.-. + |.+.-.|.
T Consensus 26 ~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~-l---P~I~I~d~ 65 (193)
T 2xha_A 26 NNGKDVNKGDLIAEEP------PIYARRSGVIVDVKN-V---RKIVVETI 65 (193)
T ss_dssp CTTCEECTTCEEEEEC------CEECSSCEEEEEEEE-E---EEEEEECT
T ss_pred CCCCEEcCCCEEEEeC------cEEEccCEEEEeecc-C---cEEEEEcC
Confidence 7899999999999555 899999999976654 2 55554443
No 55
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.29 E-value=3.6 Score=28.08 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCeEEEEEEecccceeecccceEEEeecccc
Q 031294 84 GGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (162)
Q Consensus 84 g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l 114 (162)
|...+.++..+....|.+|++|+|.+++-+.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~ 35 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVED 35 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCT
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCC
Confidence 4455777888888899999999999996553
No 56
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=50.65 E-value=24 Score=27.38 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=28.9
Q ss_pred EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEec
Q 031294 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (162)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K 94 (162)
.+.|||+.... =|+- |--+.+.|++|++||+|+.+--..
T Consensus 103 LIHIGiDTV~L--~G~g-F~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 103 FVHFGIDTVEL--KGEG-FTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp EEECSBSGGGG--TTTT-EEECSCTTCEECTTCEEEEECHHH
T ss_pred EEEeccccccc--CCcc-ceEEEeCcCEEcCCCEEEEECHHH
Confidence 67888887644 3553 444569999999999999986543
No 57
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=49.59 E-value=2.6 Score=35.27 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=29.0
Q ss_pred CCCceeecCCeEEEEEEec-----ccceeecccceEEEeeccccc
Q 031294 76 ETGASVKQGGGFGVVESVK-----ATSDVNSPISGEVIEVNTKLT 115 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K-----~v~~i~sPvsG~Vv~vN~~l~ 115 (162)
+.|+.|++|++|+.+-... ....+.+|.+|.|+..+....
T Consensus 280 ~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g~r~~p~ 324 (341)
T 1yw4_A 280 ENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPGLRAGIV 324 (341)
T ss_dssp CBTEECCSSCCCC--------CCSSCCEEESCCTTCCSSSEEEEE
T ss_pred CCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceeeecccce
Confidence 7899999999999987653 456799999999998876543
No 58
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=46.81 E-value=40 Score=25.41 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=27.4
Q ss_pred EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.+.|||+....+ |+ -|--+.+.|++|++||+|+.+...
T Consensus 81 LiHiGidTV~l~--G~-gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 81 FVHFGIDTVELK--GE-GFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp EEECSBSGGGGT--TT-TEEECSCTTCEECTTCEEEEECHH
T ss_pred EEEECccchhcC--CC-ccEEEEeCcCEECCCCEEEEECHH
Confidence 467787776544 44 234456999999999999988644
No 59
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=46.67 E-value=6.4 Score=32.96 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=28.0
Q ss_pred CCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
+.|+.|++|++|+.+-. .++.+|.+|.++...
T Consensus 282 ~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~p 313 (350)
T 2bco_A 282 ENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVFP 313 (350)
T ss_dssp CBTEECCTTCEEEEETT----EEEECSSSSCEEESC
T ss_pred cCCCEeCCCCEEEEECC----EEEEeCCCCEEEEec
Confidence 78999999999999954 789999999987764
No 60
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=44.06 E-value=14 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=27.1
Q ss_pred EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.+.|||+....+ |+ -|--+.+.|++|++||+|+.+...
T Consensus 76 LiHiGidTv~l~--G~-gF~~~V~~Gd~V~~G~~L~~~d~~ 113 (154)
T 2gpr_A 76 LLHIGLDTVSLD--GN-GFESFVTQDQEVNAGDKLVTVDLK 113 (154)
T ss_dssp EEECSSSGGGGT--TC-SEEECCCTTCEECTTCEEEEECHH
T ss_pred EEEECcchhhcC--CC-ceEEEEcCCCEEcCCCEEEEECHH
Confidence 467787776544 44 233346899999999999998654
No 61
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=43.98 E-value=18 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.8
Q ss_pred CCCceeecCCeEEEEEEecccceeecccceEEEeecc
Q 031294 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~ 112 (162)
+.|+.|++|+.++... .|.|-++|+|++.-.
T Consensus 66 ~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~ 96 (352)
T 2xhc_A 66 NNGKDVNKGDLIAEEP------PIYARRSGVIVDVKN 96 (352)
T ss_dssp CTTCEECTTCEEEEEC------CEECSSCEEEEEEEE
T ss_pred cCCCEEcCCCEEEEec------cEEEecceEEEeecc
Confidence 7999999999998776 899999999976543
No 62
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=34.93 E-value=19 Score=27.28 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=26.7
Q ss_pred EEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEe
Q 031294 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~ 93 (162)
.+.|||+....+ |+ -|--+.+.|++|++||+|+.+.-.
T Consensus 81 LiHIGidTV~l~--G~-gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 81 LIHFGIDTVSLK--GE-GFTSFVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp EEECSSSTTTTT--TT-TEEESCCCCSEECSEEEEEEECHH
T ss_pred EEEECccchhcC--CC-ccEEEEeCCCEEcCCCEEEEECHH
Confidence 456777665443 44 333456999999999999988644
No 63
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=34.54 E-value=15 Score=25.13 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.7
Q ss_pred cCCeeEEEc-CCCCceeecCCeEEEEEEecc----cceeecccceE
Q 031294 66 LGEVVFVEL-PETGASVKQGGGFGVVESVKA----TSDVNSPISGE 106 (162)
Q Consensus 66 lG~I~~v~l-p~~G~~v~~g~~l~~IEs~K~----v~~i~sPvsG~ 106 (162)
-|+|++++| |..|.+..+-.|+.+|..... -.-+.+|++..
T Consensus 3 rGdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 48 (110)
T 1m1f_A 3 RGEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSG 48 (110)
T ss_dssp TTEEEEEECCSCCTTSCCSEEEEEECSCHHHHHHHSCCEEEEEEC-
T ss_pred ccEEEEEECCCCCCcccCCcccEEEEecccccccCCeEEEEEeccc
Confidence 489999999 888988888888888865421 23366777754
No 64
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=30.86 E-value=19 Score=28.21 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
+.|++|++||.|+ .-..+.|.++|+|.--.
T Consensus 86 ~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgk 115 (193)
T 2xha_A 86 RVGTKVKQGLPLS------KNEEYICELDGKIVEIE 115 (193)
T ss_dssp CTTCEECTTSBSS------TTSCSBCCSSEEEEEEE
T ss_pred CCCCEEcCCCEEe------cCCeEEEccceEEEECC
Confidence 6799999999998 45778999999998753
No 65
>1ub4_A MAZF protein; toxin, antidote, programmed cell death, post-segregation, AD module, structural genomics, PSI; 1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Probab=28.55 E-value=18 Score=24.73 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=23.5
Q ss_pred cCCeeEEEc-CCCCceeecCCeEEEEEEecc----cceeecccceE
Q 031294 66 LGEVVFVEL-PETGASVKQGGGFGVVESVKA----TSDVNSPISGE 106 (162)
Q Consensus 66 lG~I~~v~l-p~~G~~v~~g~~l~~IEs~K~----v~~i~sPvsG~ 106 (162)
-|+|++++| |..|.+..+-.|+..|..... -.-+.+|++.+
T Consensus 8 rGdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 53 (110)
T 1ub4_A 8 MGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQ 53 (110)
T ss_dssp TTEEEEEECCC-------CEEEEEECSCHHHHHHHSCEEEEEEESC
T ss_pred cCeEEEEECCCCCCcccCCcCcEEEEecCcccccCCeEEEEEeecc
Confidence 599999999 788888888888888865421 23356666654
No 66
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=28.43 E-value=35 Score=29.68 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEc-CCCCceeecCCeEEEEEEecc
Q 031294 71 FVEL-PETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 71 ~v~l-p~~G~~v~~g~~l~~IEs~K~ 95 (162)
=|.+ .++|++|++||+|++|.+.+.
T Consensus 377 Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 377 GIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp EEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CeeEeccCCCEECCCCeEEEEEcCCc
Confidence 3444 699999999999999998743
No 67
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.17 E-value=37 Score=29.54 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEc-CCCCceeecCCeEEEEEEecc
Q 031294 71 FVEL-PETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 71 ~v~l-p~~G~~v~~g~~l~~IEs~K~ 95 (162)
=|.+ .++|++|++||+|++|.+...
T Consensus 369 Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 369 GVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp EEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 3444 699999999999999998743
No 68
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=28.09 E-value=25 Score=29.82 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=25.5
Q ss_pred CCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (162)
Q Consensus 76 ~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN 111 (162)
+.|++|++||.|+ .-..+.|.++|+|.--.
T Consensus 126 ~~g~~v~~G~vla------k~~aiiaeidG~V~fg~ 155 (352)
T 2xhc_A 126 RVGTKVKQGLPLS------KNEEYICELDGKIVEIE 155 (352)
T ss_dssp CTTCEECTTCBSB------SSSSCBCCSCEEEEEEE
T ss_pred CCCCEEccCcEEe------cCceEEeccceEEEECC
Confidence 6799999999999 45779999999998543
No 69
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=27.09 E-value=43 Score=29.52 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.8
Q ss_pred EcCCCCceeecCCeEEEEEEecc
Q 031294 73 ELPETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 73 ~lp~~G~~v~~g~~l~~IEs~K~ 95 (162)
-..++|++|++||+|++|.+.+.
T Consensus 415 l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 415 LLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp ECSCTTCEECTTCEEEEEEESSS
T ss_pred EEccCCCEECCCCeEEEEEcCCh
Confidence 34799999999999999998743
No 70
>1ne8_A Conserved hypothetical protein YDCE; structural genomics, NEW YORK SGX research center for structural genomics, PSI; HET: 1PG; 2.10A {Bacillus subtilis} SCOP: b.34.6.2
Probab=26.70 E-value=24 Score=24.18 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=28.1
Q ss_pred cCCeeEEEc-CCCCceeecCCeEEEEEEec----ccceeecccceE
Q 031294 66 LGEVVFVEL-PETGASVKQGGGFGVVESVK----ATSDVNSPISGE 106 (162)
Q Consensus 66 lG~I~~v~l-p~~G~~v~~g~~l~~IEs~K----~v~~i~sPvsG~ 106 (162)
-|+|+.++| |..|.+..+-.|+.+|.... .-.-+.+|++..
T Consensus 6 rGdI~~v~~~p~~g~e~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 51 (117)
T 1ne8_A 6 RGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQ 51 (117)
T ss_dssp TTEEEEEECCSCCTTSCCSEEEEEECSCHHHHHHCSEEEEEEEESS
T ss_pred eceEEEEECCCCCCCccCCceEEEEEeeCcccccCCceEEEEeccc
Confidence 499999999 88888877767888776542 122345566553
No 71
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=24.14 E-value=36 Score=29.71 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=21.3
Q ss_pred eEEEc-CCCCceeecCCeEEEEEEecc
Q 031294 70 VFVEL-PETGASVKQGGGFGVVESVKA 95 (162)
Q Consensus 70 ~~v~l-p~~G~~v~~g~~l~~IEs~K~ 95 (162)
+=|.+ .++|++|++||+|++|.+.+.
T Consensus 381 ~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 381 VGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred cCeeEeccCCCEECCCCeEEEEecCCH
Confidence 34555 699999999999999998743
No 72
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.94 E-value=24 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=23.8
Q ss_pred cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEE
Q 031294 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVE 73 (162)
Q Consensus 32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~ 73 (162)
+.+|..++ + +.||.. |+.+.|.+++|.-..-|+|++.-
T Consensus 42 a~i~GK~R--k-~IwI~~-GD~VlVe~~~yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 42 VSMPSKYR--K-NIWIKR-GDFLIVDPIEEGEKVKAEISFVL 79 (111)
T ss_dssp EECCTTCC--S-CCCCCS-SCEEEEEECSSCSSCCEEEEEEC
T ss_pred EEechhhc--c-cEEEcC-CCEEEEEecccCCcceEEEEEEe
Confidence 44554444 2 677754 67888888877545567777664
No 73
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=21.92 E-value=93 Score=25.39 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=27.1
Q ss_pred EEEeechhh--hhhcCCeeEEE-cCCCCceeecCCeEEEEEEe
Q 031294 54 ATVGITDHA--QDHLGEVVFVE-LPETGASVKQGGGFGVVESV 93 (162)
Q Consensus 54 ~~vGiTd~a--~~~lG~I~~v~-lp~~G~~v~~g~~l~~IEs~ 93 (162)
+.-|+.... .+.+| ..|+ +.+.|+.+++|++++.|++.
T Consensus 55 v~aG~~~~~~~f~~~~--~~v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 55 VASGIEVSRMFLEKMG--LLSKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp ECCSHHHHHHHHHHTT--CEEEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEcHHHHHHHHHHcC--CEEEEEcCCCCCcCCCCEEEEEEEc
Confidence 334754432 34456 4555 57999999999999999986
No 74
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=20.37 E-value=62 Score=25.05 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=29.1
Q ss_pred eEEEEEEecccceeecccceEEEeeccccccCCCCcCCCCCCCCcEEEEEeC
Q 031294 86 GFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPS 137 (162)
Q Consensus 86 ~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~GWl~~i~~~ 137 (162)
.-|.|+.. ....|.+|++|+|.+++-. .-+.+.. | .=|++|...
T Consensus 13 ~~G~v~~~-~~~~v~a~~~G~V~~v~v~---~G~~V~k---G-q~L~~ld~~ 56 (277)
T 2f1m_A 13 LPGRTSAY-RIAEVRPQVSGIILKRNFK---EGSDIEA---G-VSLYQIDPA 56 (277)
T ss_dssp EEEEEECS-EEEEECCSSCEEEEEECSC---TTCEECT---T-SCSEEECCH
T ss_pred EEEEEEee-eEEEEEccccEEEEEEEcC---CCCEecC---C-CEEEEECcH
Confidence 35777765 4678999999999999633 3334433 2 267777643
Done!