Query 031295
Match_columns 162
No_of_seqs 121 out of 322
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 19:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 98.5 1.3E-07 4.4E-12 64.1 3.9 52 98-159 9-60 (77)
2 2cqe_A KIAA1064 protein; CCCH 98.3 3.1E-07 1.1E-11 66.8 3.8 31 93-124 5-35 (98)
3 2rhk_C Cleavage and polyadenyl 98.3 2E-07 7E-12 64.5 2.2 43 98-160 13-55 (72)
4 2cqe_A KIAA1064 protein; CCCH 98.2 2.1E-07 7.2E-12 67.8 1.0 59 101-161 36-96 (98)
5 2d9n_A Cleavage and polyadenyl 98.1 9.6E-07 3.3E-11 61.2 2.7 27 100-127 9-35 (77)
6 1m9o_A Tristetraproline; Cys3H 97.6 8.4E-06 2.9E-10 55.1 0.0 27 100-126 49-75 (77)
7 2d9m_A Zinc finger CCCH-type d 97.2 8.5E-05 2.9E-09 52.4 1.4 24 102-126 21-44 (69)
8 2d9n_A Cleavage and polyadenyl 97.0 0.00035 1.2E-08 48.2 2.4 26 101-127 38-63 (77)
9 3d2q_A Muscleblind-like protei 96.7 0.0006 2.1E-08 46.3 1.8 25 102-127 7-32 (70)
10 2rhk_C Cleavage and polyadenyl 96.6 0.00065 2.2E-08 46.8 1.8 26 101-127 44-69 (72)
11 2e5s_A Otthump00000018578; ZF- 96.4 0.00041 1.4E-08 50.5 -0.3 27 101-128 20-47 (98)
12 3d2n_A Muscleblind-like protei 96.4 0.0015 5.1E-08 46.4 2.3 26 101-127 9-35 (83)
13 3u1l_A PRE-mRNA-splicing facto 96.1 0.0017 5.7E-08 53.5 1.4 30 98-128 67-96 (240)
14 2rpp_A Muscleblind-like protei 95.9 0.003 1E-07 45.6 2.1 26 101-127 17-43 (89)
15 3d2q_A Muscleblind-like protei 95.9 0.0029 9.8E-08 42.9 1.6 24 101-126 42-65 (70)
16 2e5s_A Otthump00000018578; ZF- 95.8 0.0028 9.4E-08 46.1 1.5 27 99-127 54-80 (98)
17 2fc6_A Nuclear, target of EGR1 94.3 0.02 6.9E-07 38.3 2.0 30 99-128 18-47 (50)
18 3d2n_A Muscleblind-like protei 93.8 0.022 7.5E-07 40.4 1.6 26 101-128 43-68 (83)
19 2rpp_A Muscleblind-like protei 91.1 0.078 2.7E-06 38.1 1.5 26 101-128 51-76 (89)
20 3u9g_A Zinc finger CCCH-type a 91.0 0.074 2.5E-06 44.6 1.5 24 102-127 176-199 (229)
21 3v33_A Ribonuclease ZC3H12A; r 90.6 0.048 1.6E-06 45.3 0.0 26 100-128 191-216 (223)
22 3u9g_A Zinc finger CCCH-type a 72.9 1.5 5.1E-05 36.8 1.9 23 102-125 152-178 (229)
23 2kqb_A Aprataxin and PNK-like 33.6 19 0.00065 26.3 1.8 18 111-128 15-41 (89)
24 2wfp_A Mannose-6-phosphate iso 20.8 29 0.001 30.0 0.9 65 46-116 84-152 (394)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.45 E-value=1.3e-07 Score=64.09 Aligned_cols=52 Identities=25% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCCCCCCccchhccCCCCCCCCccCCCCCcccccccccccCcceeeccCCCCCccchhcccC
Q 031295 98 RPGVHDCSYYLRTGRCRFGMSCKFNHPVPRQIQSLNQSINSNTVSIEMNPNNSANSNRMSTG 159 (162)
Q Consensus 98 RPg~~~C~fYmKTG~CRFG~~CKFnHP~~~~s~~~~~~vn~~~V~lp~rP~n~~~~~~~~~g 159 (162)
+....+|++|+++|.|+||++|+|.|......... ...+....+|.+|..+|
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----------~~~~~k~~~C~~f~~~G 60 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----------RHPKYKTELCHKFKLQG 60 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----------ccccccCCcccchhhCc
Confidence 45678999999999999999999999987532211 11133456787777666
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.34 E-value=3.1e-07 Score=66.84 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=25.3
Q ss_pred cCCCCCCCCCCCccchhccCCCCCCCCccCCC
Q 031295 93 FCYPQRPGVHDCSYYLRTGRCRFGMSCKFNHP 124 (162)
Q Consensus 93 ~~~P~RPg~~~C~fYmKTG~CRFG~~CKFnHP 124 (162)
+.+..+....+|+||+ +|.|++|++|+|.|+
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC
Confidence 4556666788999995 799999999999998
No 3
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.31 E-value=2e-07 Score=64.50 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=34.4
Q ss_pred CCCCCCCccchhccCCCCCCCCccCCCCCcccccccccccCcceeeccCCCCCccchhcccCc
Q 031295 98 RPGVHDCSYYLRTGRCRFGMSCKFNHPVPRQIQSLNQSINSNTVSIEMNPNNSANSNRMSTGK 160 (162)
Q Consensus 98 RPg~~~C~fYmKTG~CRFG~~CKFnHP~~~~s~~~~~~vn~~~V~lp~rP~n~~~~~~~~~g~ 160 (162)
.....+|+||++ |.|+.|++|+|.|+.+.. ...+|.||+++|.
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------------~~~~C~~f~~~G~ 55 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------------KMSECYFYSKFGE 55 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------------SCCBCHHHHHHSC
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------------cCCcccccCCCCC
Confidence 355789999988 999999999999996531 2457999988663
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.24 E-value=2.1e-07 Score=67.76 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=45.2
Q ss_pred CCCCccchhccCCCCCCCCccCCCCCcccc-c-ccccccCcceeeccCCCCCccchhcccCcC
Q 031295 101 VHDCSYYLRTGRCRFGMSCKFNHPVPRQIQ-S-LNQSINSNTVSIEMNPNNSANSNRMSTGKA 161 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~~CKFnHP~~~~s~-~-~~~~vn~~~V~lp~rP~n~~~~~~~~~g~~ 161 (162)
..+|.||+++|.|++|++|+|.|+...... . ..+.+ ..-..+.+.++.-|..+.|+|-+
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~l~~~l--~~~~~~~~~~e~e~~~~~k~~~~ 96 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKML--ADDAEAGAEDEKEVEELKKSGPS 96 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHHHHHHHHH--HHHHHSCCCCCCCCCCSCCCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCCcccchhHHhhhc--chhhhhccCCcHHHHHHHHcCCC
Confidence 578999999999999999999999764221 1 11222 33457899999999999999854
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=9.6e-07 Score=61.21 Aligned_cols=27 Identities=33% Similarity=0.667 Sum_probs=23.9
Q ss_pred CCCCCccchhccCCCCCCCCccCCCCCc
Q 031295 100 GVHDCSYYLRTGRCRFGMSCKFNHPVPR 127 (162)
Q Consensus 100 g~~~C~fYmKTG~CRFG~~CKFnHP~~~ 127 (162)
...+|+||++ |.|+.|++|+|.|+...
T Consensus 9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 9 KTVVCKHWLR-GLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp TTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred cceeCHhHcc-CcCCCCCCCCCcccccc
Confidence 3579999988 99999999999999763
No 6
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.61 E-value=8.4e-06 Score=55.07 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=0.0
Q ss_pred CCCCCccchhccCCCCCCCCccCCCCC
Q 031295 100 GVHDCSYYLRTGRCRFGMSCKFNHPVP 126 (162)
Q Consensus 100 g~~~C~fYmKTG~CRFG~~CKFnHP~~ 126 (162)
...+|.+|+++|.|+||.+|+|.|+..
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp ---------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 357899998999999999999999864
No 7
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=8.5e-05 Score=52.38 Aligned_cols=24 Identities=42% Similarity=0.783 Sum_probs=22.1
Q ss_pred CCCccchhccCCCCCCCCccCCCCC
Q 031295 102 HDCSYYLRTGRCRFGMSCKFNHPVP 126 (162)
Q Consensus 102 ~~C~fYmKTG~CRFG~~CKFnHP~~ 126 (162)
..|..| .+|.|+||++|.|.|-..
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBSSHH
T ss_pred ccCccc-CcCCCCCCCccCCcCCHH
Confidence 899999 679999999999999765
No 8
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00035 Score=48.22 Aligned_cols=26 Identities=31% Similarity=0.833 Sum_probs=23.5
Q ss_pred CCCCccchhccCCCCCCCCccCCCCCc
Q 031295 101 VHDCSYYLRTGRCRFGMSCKFNHPVPR 127 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~~CKFnHP~~~ 127 (162)
.++|.||+++|.|. |++|+|.|..+.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCCCcccCCCCccC-CCCeeccCCCcc
Confidence 46899999999999 999999998764
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.69 E-value=0.0006 Score=46.34 Aligned_cols=25 Identities=36% Similarity=0.885 Sum_probs=21.9
Q ss_pred CCCccchhccCCCCCC-CCccCCCCCc
Q 031295 102 HDCSYYLRTGRCRFGM-SCKFNHPVPR 127 (162)
Q Consensus 102 ~~C~fYmKTG~CRFG~-~CKFnHP~~~ 127 (162)
++|++|+ .|.|+-|+ .|+|.|+.+.
T Consensus 7 ~vC~~f~-~G~C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 7 EVCREYQ-RGNCNRGENDCRFAHPADS 32 (70)
T ss_dssp EBCHHHH-TTCCSSCTTTCSSBCCCTT
T ss_pred hhCHHHh-cCCCCCCCCCCCCccCccc
Confidence 6899995 59999999 4999999874
No 10
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.65 E-value=0.00065 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=23.7
Q ss_pred CCCCccchhccCCCCCCCCccCCCCCc
Q 031295 101 VHDCSYYLRTGRCRFGMSCKFNHPVPR 127 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~~CKFnHP~~~ 127 (162)
.++|.||++.|.|.+ ++|+|.|..+.
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCcccccCCCCCCCC-CCeeccCCCcc
Confidence 568999999999999 99999998764
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.00041 Score=50.53 Aligned_cols=27 Identities=33% Similarity=0.858 Sum_probs=24.0
Q ss_pred CCCCccchhccCCCCCC-CCccCCCCCcc
Q 031295 101 VHDCSYYLRTGRCRFGM-SCKFNHPVPRQ 128 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~-~CKFnHP~~~~ 128 (162)
.++|++|++ |.|+-|+ .|+|.|+.+..
T Consensus 20 ~~VCr~Flr-G~C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 20 LEVCREFQR-GNCARGETDCRFAHPADST 47 (98)
T ss_dssp EEBCSHHHH-TCCSSHHHHCSSBCCSSCC
T ss_pred hhhhHHHhc-CcCCCCCCCCCCcCCchhc
Confidence 469999988 9999999 79999998753
No 12
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.0015 Score=46.45 Aligned_cols=26 Identities=35% Similarity=0.761 Sum_probs=23.3
Q ss_pred CCCCccchhccCCCCCC-CCccCCCCCc
Q 031295 101 VHDCSYYLRTGRCRFGM-SCKFNHPVPR 127 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~-~CKFnHP~~~ 127 (162)
.++|++|++ |.|.=|+ .|+|.||...
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 368999988 9999996 9999999874
No 13
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.09 E-value=0.0017 Score=53.51 Aligned_cols=30 Identities=23% Similarity=0.752 Sum_probs=25.9
Q ss_pred CCCCCCCccchhccCCCCCCCCccCCCCCcc
Q 031295 98 RPGVHDCSYYLRTGRCRFGMSCKFNHPVPRQ 128 (162)
Q Consensus 98 RPg~~~C~fYmKTG~CRFG~~CKFnHP~~~~ 128 (162)
+....+|.||.| |.|+.|+.|.|.|..+..
T Consensus 67 ~~~~~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 67 DGQLFFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp TTCCSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred CCCCeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 445679999988 999999999999988764
No 14
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.94 E-value=0.003 Score=45.57 Aligned_cols=26 Identities=35% Similarity=0.789 Sum_probs=23.8
Q ss_pred CCCCccchhccCCCCCC-CCccCCCCCc
Q 031295 101 VHDCSYYLRTGRCRFGM-SCKFNHPVPR 127 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~-~CKFnHP~~~ 127 (162)
.++|+.|++ |.|.=|+ .|+|.||...
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 479999988 9999998 9999999886
No 15
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.86 E-value=0.0029 Score=42.94 Aligned_cols=24 Identities=42% Similarity=0.948 Sum_probs=22.1
Q ss_pred CCCCccchhccCCCCCCCCccCCCCC
Q 031295 101 VHDCSYYLRTGRCRFGMSCKFNHPVP 126 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~~CKFnHP~~ 126 (162)
.++|.+|++ |.|..| +|+|.|+..
T Consensus 42 ~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 42 VTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred ceeccccCc-CCCCCC-CcCeeCCHH
Confidence 589999988 999999 999999976
No 16
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.0028 Score=46.14 Aligned_cols=27 Identities=37% Similarity=0.807 Sum_probs=23.7
Q ss_pred CCCCCCccchhccCCCCCCCCccCCCCCc
Q 031295 99 PGVHDCSYYLRTGRCRFGMSCKFNHPVPR 127 (162)
Q Consensus 99 Pg~~~C~fYmKTG~CRFG~~CKFnHP~~~ 127 (162)
...++|.+|+| |.|..| +|+|.|+...
T Consensus 54 ~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 54 NTVTVCMDYIK-GRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp CEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred Cccccchhhcc-CCCCCC-CcCccCChHH
Confidence 34589999988 999999 9999999874
No 17
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.29 E-value=0.02 Score=38.32 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=27.5
Q ss_pred CCCCCCccchhccCCCCCCCCccCCCCCcc
Q 031295 99 PGVHDCSYYLRTGRCRFGMSCKFNHPVPRQ 128 (162)
Q Consensus 99 Pg~~~C~fYmKTG~CRFG~~CKFnHP~~~~ 128 (162)
....+|.-|...|.|+.|..|.+.|..+..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 467999999999999999999999999864
No 18
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.83 E-value=0.022 Score=40.35 Aligned_cols=26 Identities=42% Similarity=0.850 Sum_probs=23.1
Q ss_pred CCCCccchhccCCCCCCCCccCCCCCcc
Q 031295 101 VHDCSYYLRTGRCRFGMSCKFNHPVPRQ 128 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~~CKFnHP~~~~ 128 (162)
.++|.+|+| |.|.-| +|+|-|+....
T Consensus 43 ~~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 43 VIACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred eeehhHhhh-ccccCC-CcceeCChHHH
Confidence 489999988 999999 99999998754
No 19
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=91.10 E-value=0.078 Score=38.12 Aligned_cols=26 Identities=38% Similarity=0.754 Sum_probs=23.0
Q ss_pred CCCCccchhccCCCCCCCCccCCCCCcc
Q 031295 101 VHDCSYYLRTGRCRFGMSCKFNHPVPRQ 128 (162)
Q Consensus 101 ~~~C~fYmKTG~CRFG~~CKFnHP~~~~ 128 (162)
..+|..|+| |.|.-+ +|||-|+....
T Consensus 51 ~~vC~dflk-G~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 51 VIACFDSLK-GRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp EEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred eeeehhhhh-CcCCCC-CcceecCHHHH
Confidence 589999987 999998 99999998754
No 20
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=91.00 E-value=0.074 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.812 Sum_probs=19.3
Q ss_pred CCCccchhccCCCCCCCCccCCCCCc
Q 031295 102 HDCSYYLRTGRCRFGMSCKFNHPVPR 127 (162)
Q Consensus 102 ~~C~fYmKTG~CRFG~~CKFnHP~~~ 127 (162)
-+|.+|++ |.||| .+||..|....
T Consensus 176 HIC~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 176 HICEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CSCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred eccchhhc-CCcCC-CCccCccCccC
Confidence 46788866 99999 79999998753
No 21
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=90.58 E-value=0.048 Score=45.27 Aligned_cols=26 Identities=31% Similarity=0.884 Sum_probs=0.0
Q ss_pred CCCCCccchhccCCCCCCCCccCCCCCcc
Q 031295 100 GVHDCSYYLRTGRCRFGMSCKFNHPVPRQ 128 (162)
Q Consensus 100 g~~~C~fYmKTG~CRFG~~CKFnHP~~~~ 128 (162)
.+..|.|= ..|-||.+|||.||-...
T Consensus 191 ~~~~~~~~---~~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 191 RKQPCPYG---RKCTYGIKCRFFHPERPS 216 (223)
T ss_dssp -----------------------------
T ss_pred CCCCCCCC---cccccCCcceecCCccCC
Confidence 47789986 479999999999998643
No 22
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=72.85 E-value=1.5 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.0
Q ss_pred CCCccchh----ccCCCCCCCCccCCCC
Q 031295 102 HDCSYYLR----TGRCRFGMSCKFNHPV 125 (162)
Q Consensus 102 ~~C~fYmK----TG~CRFG~~CKFnHP~ 125 (162)
++|.+| | .|.|.|++.|..-|-=
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLHIC 178 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLHIC 178 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBCSC
T ss_pred hHHHHh-CCCCCCCcCCCCCCCcceecc
Confidence 799999 7 3799999999998854
No 23
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=33.61 E-value=19 Score=26.27 Aligned_cols=18 Identities=33% Similarity=0.938 Sum_probs=13.8
Q ss_pred cCCCCCCCC---------ccCCCCCcc
Q 031295 111 GRCRFGMSC---------KFNHPVPRQ 128 (162)
Q Consensus 111 G~CRFG~~C---------KFnHP~~~~ 128 (162)
-.|+||.+| +|.||.+..
T Consensus 15 ~~C~yG~~CYRkNp~H~~~fsHP~d~d 41 (89)
T 2kqb_A 15 TSCMYGANCYRKNPVHFQHFSHPGDSD 41 (89)
T ss_dssp EECTTTTCCCCCCTTHHHHEECTTSTT
T ss_pred CCCCCCcccccCChHHHhhccCCCccc
Confidence 468899999 478888753
No 24
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=20.76 E-value=29 Score=30.01 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=44.2
Q ss_pred CccccccCCCCCC-CCCcCCchHHHHhhhc-ccccccccccCccccccCcCCCCCCCCCCCccchhc--cCCCCC
Q 031295 46 PPLDMQNLDIEDP-EDQVDSDTEEEVENVD-KNNKQVDEVTGNQMTRRKFCYPQRPGVHDCSYYLRT--GRCRFG 116 (162)
Q Consensus 46 p~~~~~n~~~e~~-s~qv~s~~e~e~~~~a-~l~khv~l~s~~~m~~~~~~~P~RPg~~~C~fYmKT--G~CRFG 116 (162)
-+|.++=||.++. |-|||.|.+...+--+ ..+..+.+.... ..|+-..+|+.|+|.+.. +.|.|.
T Consensus 84 lP~L~KvLda~~~LSIQvHPd~~~A~~~f~~e~~~Gi~~~~~~------~~Y~D~nhKpE~~yaLt~f~al~GFr 152 (394)
T 2wfp_A 84 LPFLFKVLCAAQPLSIQVHPNKRNSEIGFAKENAAGIPMDAAE------RNYKDPNHKPELVFALTPFLAMNAFR 152 (394)
T ss_dssp CCCEEEEEEESSCCCCEECCCHHHHHHHHHHHHHTTCCTTSTT------CCBCCSSCCCEEEEESSCEEEEEEEC
T ss_pred CcEEEeeeccCCCcccccCcCHHHHHHHhhhhhcccccccccc------cccCCCCCCcEEEEEccchhhhcCCC
Confidence 6788888888776 8899999765554322 123334443333 579999999999999874 445543
Done!