Query 031297
Match_columns 162
No_of_seqs 148 out of 245
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bij_A Uncharacterized protein 97.7 1.4E-05 4.7E-10 66.6 3.2 49 1-53 81-142 (285)
2 4f6o_A Metacaspase-1; rossmann 96.2 0.0016 5.4E-08 56.8 1.8 51 1-53 135-201 (350)
3 4af8_A Metacaspase MCA2; hydro 96.1 0.0042 1.4E-07 54.5 4.0 51 1-53 175-240 (367)
4 3uoa_B Mucosa-associated lymph 95.6 0.016 5.3E-07 51.3 5.7 69 1-73 75-162 (390)
5 2h54_A Caspase-1; allosteric s 85.2 0.33 1.1E-05 38.1 1.7 47 1-50 115-170 (178)
6 1m72_A Caspase-1; caspase, cys 71.3 1.4 4.8E-05 36.4 1.4 49 1-50 105-154 (272)
7 1f1j_A Caspase-7 protease; cas 70.3 1.6 5.6E-05 36.8 1.6 50 1-51 143-193 (305)
8 3h11_B Caspase-8; cell death, 70.0 1.9 6.4E-05 35.6 1.9 50 2-51 99-149 (271)
9 1pyo_A Caspase-2; apoptosis, c 67.4 1.1 3.6E-05 34.9 -0.2 49 2-50 109-158 (167)
10 1qtn_A Caspase-8; apoptosis, d 66.0 0.86 3E-05 35.2 -0.9 50 2-51 105-155 (164)
11 2j32_A Caspase-3; Pro-caspase3 63.0 2.1 7.1E-05 34.8 0.8 50 1-51 90-140 (250)
12 3od5_A Caspase-6; caspase doma 59.9 1.3 4.5E-05 36.7 -0.9 47 2-51 96-145 (278)
13 4ehd_A Caspase-3; caspase, apo 59.3 3.3 0.00011 34.4 1.4 47 1-51 118-168 (277)
14 2fp3_A Caspase NC; apoptosis, 56.6 1.5 5.1E-05 37.1 -1.2 51 1-51 134-189 (316)
15 2nn3_C Caspase-1; cysteine pro 56.1 3 0.0001 35.3 0.6 50 1-51 133-183 (310)
16 1nw9_B Caspase 9, apoptosis-re 54.8 4.5 0.00015 33.1 1.5 49 2-50 96-152 (277)
17 2dko_A Caspase-3; low barrier 49.8 2.9 9.9E-05 31.6 -0.4 49 2-51 91-140 (146)
18 3e4c_A Caspase-1; zymogen, inf 44.9 4 0.00014 34.3 -0.4 51 1-51 132-188 (302)
19 2ql9_A Caspase-7; cysteine pro 38.9 3.5 0.00012 32.3 -1.5 48 2-50 119-167 (173)
20 3sir_A Caspase; hydrolase; 2.6 37.2 17 0.0006 29.5 2.4 47 1-51 93-143 (259)
21 3p45_A Caspase-6; protease, hu 28.0 8.2 0.00028 30.4 -1.0 49 2-51 119-168 (179)
22 3h11_A CAsp8 and FADD-like apo 24.3 14 0.00046 30.6 -0.4 48 2-49 105-155 (272)
No 1
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=97.74 E-value=1.4e-05 Score=66.61 Aligned_cols=49 Identities=29% Similarity=0.506 Sum_probs=38.3
Q ss_pred CCCCCC-------------CCeeecCCCCccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc
Q 031297 1 MTGHGG-------------DEFLKFQDSEELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS 53 (162)
Q Consensus 1 ftgHGg-------------~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~ 53 (162)
|+|||. +++|...|. .+..++|.+.|+.+ ++-+++++++|+|+||++.+
T Consensus 81 fSGHG~~~~~~~g~e~dg~~~~l~p~D~-~i~~~~l~~~l~~l---~~~~~~~vilD~C~SG~~~~ 142 (285)
T 3bij_A 81 YSGHGGQVPDTSNDEPDGVDETWCLFDG-ELIDDELYALLGKF---AAGVRVLVFSDSCHSGTVVK 142 (285)
T ss_dssp EESCEEEEECTTSCCTTCEEEEEECSSS-EEEHHHHHHHHTTS---CSSCEEEEEEECCCCCCHHH
T ss_pred EcCCcccccCCCCCccCCCcceEEecCC-CccHHHHHHHHHhc---cCCCeEEEEEecCCCCcccc
Confidence 689995 247776675 67788888888665 34578999999999999876
No 2
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0016 Score=56.84 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCCCCCC----------C---eeecCCC---CccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc
Q 031297 1 MTGHGGD----------E---FLKFQDS---EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS 53 (162)
Q Consensus 1 ftgHGg~----------g---~l~Fpd~---~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~ 53 (162)
|+|||.. | .|.-.|. ..|..+||.+.|.+ ...+=.++++++|+|+||++.+
T Consensus 135 FSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~--~l~~g~~vt~IlD~ChSGt~ld 201 (350)
T 4f6o_A 135 YSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVK--PLQQGVRLTALFDSCHSGTVLD 201 (350)
T ss_dssp EESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTT--TCCTTCEEEEEECSSSCTTTTC
T ss_pred EcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHh--hcCCCCeEEEEEccCCCCcccc
Confidence 6899962 2 2444441 25778888877653 1234579999999999999875
No 3
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=96.07 E-value=0.0042 Score=54.48 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCCCCCC---------C---eeecCCC---CccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc
Q 031297 1 MTGHGGD---------E---FLKFQDS---EELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS 53 (162)
Q Consensus 1 ftgHGg~---------g---~l~Fpd~---~~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~ 53 (162)
|+|||.. | .|.-.|. ..+..+||.+.|-. .-++=.++++++|+|+||++.+
T Consensus 175 FSGHG~q~~d~~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~--~l~~g~~v~vIlD~ChSGt~~d 240 (367)
T 4af8_A 175 YSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFS--RLPEKVRLTAVFDCGHSGSIMD 240 (367)
T ss_dssp EESCEEEECCC-----CCEEEECCTTHHHHCCEEHHHHHHHHTT--TCCTTCEEEEEEECTTCCCCTT
T ss_pred EcCCcCccCCCCCCCCCcceEEEeecCCcCCCccHHHHHHHHHH--hccCCCEEEEEEeCCCCCcccc
Confidence 6899972 2 2444341 14666777766322 1123479999999999999976
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=95.62 E-value=0.016 Score=51.25 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=42.8
Q ss_pred CCCCCCC----CeeecCCCC-------ccCHHHHHHHHHHHHHhCccceEEEEEeccccccccc-------cCCC-CcEE
Q 031297 1 MTGHGGD----EFLKFQDSE-------ELQSHDLADAVKQMKEKHRFKELLIMVDTCQAATLFS-------QVPV-TNFF 61 (162)
Q Consensus 1 ftgHGg~----g~l~Fpd~~-------~L~a~dL~~~l~~M~~~krY~kmvf~vEaC~SgSmf~-------~l~~-~NV~ 61 (162)
|+|||.. +||.=-|.. .+..++|.+.++. .+=|.-+|++|||+++..++ .++. .|++
T Consensus 75 fsGHG~~~~g~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~----~~~K~kL~ILDACrg~~~~~~~~~~~~~ip~~ad~L 150 (390)
T 3uoa_B 75 YAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE----KETGLNVFLLDMCRKRNDYDDTIPILDALKVTANIV 150 (390)
T ss_dssp EESCEEEETTEEEECCTTCCSSCCGGGSEEHHHHHHHHHH----TTCSEEEEEEESCCCCCTTCCCCCCCCCCCCCSCEE
T ss_pred EecCccccCCcceEEecCCCccccccceeeHHHHHHHHHh----cCCCceEEEEECCCCCCcccccccccccCcccCCcE
Confidence 5799943 665444432 2455555555443 34567789999999975454 3444 5777
Q ss_pred EEeccCCCCCcc
Q 031297 62 GSVMETIHTDSA 73 (162)
Q Consensus 62 a~Taa~~~e~S~ 73 (162)
...|+.+++-|+
T Consensus 151 i~yAT~pG~~A~ 162 (390)
T 3uoa_B 151 FGYATCQGAEAF 162 (390)
T ss_dssp EEESSCTTCCCE
T ss_pred EEEEcCCCcEee
Confidence 666766776444
No 5
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=85.23 E-value=0.33 Score=38.15 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCCCCCCCeeecCCCC-----ccCHHHHHHHHHHHHHhC---c-cceEEEEEecccccc
Q 031297 1 MTGHGGDEFLKFQDSE-----ELQSHDLADAVKQMKEKH---R-FKELLIMVDTCQAAT 50 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~-----~L~a~dL~~~l~~M~~~k---r-Y~kmvf~vEaC~SgS 50 (162)
|.|||..|.|.-.|.. .+.-++|...|+ ..+ . =|-=+|+++||+++-
T Consensus 115 ~lsHG~~g~i~g~D~~~~~~~~v~l~~I~~~f~---~~~CpsL~gKPKlffiqACRg~~ 170 (178)
T 2h54_A 115 FMSHGIREGICGKKHSEQVPDILQLNAIFNMLN---TKNCPSLKDKPKVIIIQACRGDS 170 (178)
T ss_dssp EESCBCSSCEECTTCCSSSCCEECHHHHHHHHS---TTTCGGGTTSCEEEEEESCSSSB
T ss_pred EecCCCCCeEEeecCCcccCcEEEHHHHHHHHh---hcCChhhcCCceEEEEECCCCCC
Confidence 3589999988776652 355555544443 222 1 122277889999854
No 6
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=71.25 E-value=1.4 Score=36.40 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCcc-ceEEEEEecccccc
Q 031297 1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRF-KELLIMVDTCQAAT 50 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY-~kmvf~vEaC~SgS 50 (162)
|.+||..|+|.--|+ .+.-++|.+.|+.-.-...- |==+|+++||...-
T Consensus 105 ~lsHG~~~~i~~~D~-~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~ 154 (272)
T 1m72_A 105 VLTHGELGMLYAKDT-HYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDR 154 (272)
T ss_dssp EESCEETTEEECSSS-EECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred EcCCCCCCEEEecCC-cEEHHHHHHHhccccChhhcCCceEEEEeCCCCCc
Confidence 358999999988776 56666665554320000011 11277799999644
No 7
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=70.32 E-value=1.6 Score=36.81 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=29.0
Q ss_pred CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhC-ccceEEEEEeccccccc
Q 031297 1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~SgSm 51 (162)
|.|||..|+|.--|. .+.-++|...|+--.-.. +=|==+|+++||...-.
T Consensus 143 ilsHG~~~~i~g~D~-~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 193 (305)
T 1f1j_A 143 LLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTEL 193 (305)
T ss_dssp EESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EecCCCCCeEEecCC-eEEHHHHHHHhhhccChhhcCCceEEEeccccCCcc
Confidence 458999998877775 566555554332100000 01122778999997653
No 8
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=70.02 E-value=1.9 Score=35.63 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=29.8
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccc-eEEEEEeccccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFK-ELLIMVDTCQAATL 51 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~-kmvf~vEaC~SgSm 51 (162)
.+||..|.|.--|+..+.-++|.+.|.--.-...-+ ==+|+|+||+..-.
T Consensus 99 lSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 149 (271)
T 3h11_B 99 LSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNY 149 (271)
T ss_dssp ESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcc
Confidence 579999999877765566665555443200000111 12789999987543
No 9
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=67.38 E-value=1.1 Score=34.90 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=30.9
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCcc-ceEEEEEecccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRF-KELLIMVDTCQAAT 50 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY-~kmvf~vEaC~SgS 50 (162)
.+||..|.|.--|++.+.-++|...|.-=+=...- |==+|++.||+..-
T Consensus 109 lSHG~~g~i~g~D~~~v~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~ 158 (167)
T 1pyo_A 109 LSHGVEGAIYGVDGKLLQLQEVFQLFDNANCPSLQNKPKMFFIQACRGDE 158 (167)
T ss_dssp ESCEETTEEECTTSCEEEHHHHHHHTSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred CCCCCCCeEEEeCCCEEcHHHHHHHhcccCChhHcCCCeEEEEECCCCCC
Confidence 47999999998887667766666655420000011 11278999999854
No 10
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=66.03 E-value=0.86 Score=35.24 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccc-eEEEEEeccccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFK-ELLIMVDTCQAATL 51 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~-kmvf~vEaC~SgSm 51 (162)
..||..|.|.--|+..+.-++|...|.--.=...-+ ==+|+|.||+..-.
T Consensus 105 lSHG~~g~i~g~D~~~v~i~~i~~~F~~~~CpsL~gKPKlFfiQACRG~~~ 155 (164)
T 1qtn_A 105 LSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNY 155 (164)
T ss_dssp ESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCSSSBC
T ss_pred CCCCCCCEEEeeCCCEeeHHHHHHHhccccChhhcCCCeEEEEECCCCCCc
Confidence 479999999988876677777766553200000111 12788999998543
No 11
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=63.05 E-value=2.1 Score=34.76 Aligned_cols=50 Identities=10% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCccce-EEEEEeccccccc
Q 031297 1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRFKE-LLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY~k-mvf~vEaC~SgSm 51 (162)
|.|||..|.|.--|+ .+.-++|.+.|+.=+-...-+| =+|+++||...-.
T Consensus 90 ~lsHG~~g~i~~~D~-~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~ 140 (250)
T 2j32_A 90 LLSHGEEGIIFGTNG-PVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140 (250)
T ss_dssp EESCEETTEEEETTE-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEEC
T ss_pred ECCCCCCCeEEecCC-cEEHHHHHHHhccccChhHcCCCeEEEEecccCCcc
Confidence 358999998886665 5555554444432000001111 2788999987543
No 12
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=59.86 E-value=1.3 Score=36.69 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHH---HhCccceEEEEEeccccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMK---EKHRFKELLIMVDTCQAATL 51 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~---~~krY~kmvf~vEaC~SgSm 51 (162)
.+||..|.|.--|+ .+.-++|.+.|+-=. ..+| ==+|+|+||+..-.
T Consensus 96 lSHG~~g~i~g~D~-~v~l~~I~~~f~~~~CpsL~gK--PKlffiQACRG~~~ 145 (278)
T 3od5_A 96 LSHGEGNHIYAYDA-KIEIQTLTGLFKGDKCHSLVGK--PKIFIIQACRGNQH 145 (278)
T ss_dssp ESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTS--CEEEEEESCCSSBC
T ss_pred ECCCCCCEEEEeCC-eEEHHHHHHHhccccChhhcCC--CcEEEEecCCCCcc
Confidence 57999999988776 466555555443200 0111 12788999997544
No 13
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=59.31 E-value=3.3 Score=34.35 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhC----ccceEEEEEeccccccc
Q 031297 1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKH----RFKELLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~k----rY~kmvf~vEaC~SgSm 51 (162)
|.+||..|.|.=-|+ .+.-++|.+.|+ ..+ +=|-=+|+|+||+..-.
T Consensus 118 ilSHG~~g~i~g~D~-~v~l~~I~~~f~---~~~CpsL~gKPKlffiQACRG~~~ 168 (277)
T 4ehd_A 118 LLSHGEEGIIFGTNG-PVDLKKITNFFR---GDRCRSLTGKPKLFIIQACRGTEL 168 (277)
T ss_dssp EESCEETTEEEETTE-EEEHHHHHHTTS---TTTCGGGTTSCEEEEEESCCSSBC
T ss_pred EEcCCCCCEEEEeCC-cEeHHHHHHHhh---hccCchhcCCccEEEEecCCCCcc
Confidence 358999999887775 566555544443 111 11222788999997643
No 14
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=56.62 E-value=1.5 Score=37.12 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCCCCCC----CeeecCCCCccCHHHHHHHHHHHHHhC-ccceEEEEEeccccccc
Q 031297 1 MTGHGGD----EFLKFQDSEELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~----g~l~Fpd~~~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~SgSm 51 (162)
|.+||.. |+|.--|+..+.-++|.+.|+--.-.. +=|==+|+|+||...-.
T Consensus 134 ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 189 (316)
T 2fp3_A 134 LMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEY 189 (316)
T ss_dssp EESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC-----
T ss_pred EccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcc
Confidence 3579998 999887875566666555443200000 11112788899997543
No 15
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=56.09 E-value=3 Score=35.34 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=29.6
Q ss_pred CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCcc-ceEEEEEeccccccc
Q 031297 1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRF-KELLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY-~kmvf~vEaC~SgSm 51 (162)
|.+||..|+|.--|+ .+.-++|.+.|+--.-...- |==+|+|+||...-.
T Consensus 133 ilSHG~~g~i~g~D~-~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~ 183 (310)
T 2nn3_C 133 VLTAGELGMLYAKDT-HYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRL 183 (310)
T ss_dssp EEEEEETTEEECSSC-EECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCC
T ss_pred EeCCCCCCEEEecCC-cEEHHHHHHHhccccChhhcCCceEEEEecccCCcc
Confidence 358999999987776 56666655544320000011 112788999987543
No 16
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=54.77 E-value=4.5 Score=33.14 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCCCCC-------CeeecCCCCccCHHHHHHHHHHHHHhCcc-ceEEEEEecccccc
Q 031297 2 TGHGGD-------EFLKFQDSEELQSHDLADAVKQMKEKHRF-KELLIMVDTCQAAT 50 (162)
Q Consensus 2 tgHGg~-------g~l~Fpd~~~L~a~dL~~~l~~M~~~krY-~kmvf~vEaC~SgS 50 (162)
.+||.. |.+.--|++.+.-++|.+.|+--.-...- |==+|+|+||+..-
T Consensus 96 lSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~ 152 (277)
T 1nw9_B 96 LSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQ 152 (277)
T ss_dssp EEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---
T ss_pred eCCCCccccccCCCcEEecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCc
Confidence 479987 77765565456666655544310000011 11278899998754
No 17
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=49.76 E-value=2.9 Score=31.64 Aligned_cols=49 Identities=12% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHHHhCcc-ceEEEEEeccccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMKEKHRF-KELLIMVDTCQAATL 51 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~krY-~kmvf~vEaC~SgSm 51 (162)
..||..|.|.-.|+ .+.-++|...|.-=+=...- |==+|++.||+..-.
T Consensus 91 lSHG~~g~i~g~D~-~~~l~~i~~~F~~~~CpsL~gKPKlffiQACRG~~~ 140 (146)
T 2dko_A 91 LSHGEEGIIFGTNG-PVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTEL 140 (146)
T ss_dssp ESCEETTEEEETTE-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBC
T ss_pred ccCCCCCEEEEeCC-cEeHHHHHHHhccccChhhcCCCeEEEEECCCCCCC
Confidence 47999999998886 56655555444210000011 122778999998543
No 18
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=44.86 E-value=4 Score=34.32 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=27.3
Q ss_pred CCCCCCCCeeecCCC-----CccCHHHHHHHHHHHHHhC-ccceEEEEEeccccccc
Q 031297 1 MTGHGGDEFLKFQDS-----EELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~-----~~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~SgSm 51 (162)
|.+||..|.|.=-|. +.+.-++|.+.|+.-+=.. +=|==+|+|+||+..-.
T Consensus 132 ~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~ 188 (302)
T 3e4c_A 132 FMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSP 188 (302)
T ss_dssp EEEEEETTEEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSC
T ss_pred EeccCcCCeEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCC
Confidence 358999987643342 3455555554443200000 11222788999998654
No 19
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=38.90 E-value=3.5 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHHHhC-ccceEEEEEecccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAAT 50 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~SgS 50 (162)
..||..|.|.-.|+ .+.-++|...|.-=.=.. +=|==+|+|.||+..-
T Consensus 119 lSHG~~g~I~g~D~-~~~i~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~ 167 (173)
T 2ql9_A 119 LSHGEENVIYGKDG-VTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTE 167 (173)
T ss_dssp ESCEETTEEEETTE-EEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSB
T ss_pred cCCCCCCEEEEcCC-cEEHHHHHHHcCcccChhHcCCCeEEEEECCCCCC
Confidence 47999999988886 455444444332100000 1122277799999854
No 20
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=37.24 E-value=17 Score=29.48 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCCCCCCCeeecCCCCccCHHHHHHHHHHHHHhC----ccceEEEEEeccccccc
Q 031297 1 MTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKH----RFKELLIMVDTCQAATL 51 (162)
Q Consensus 1 ftgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~k----rY~kmvf~vEaC~SgSm 51 (162)
|.+||..|.|.=-|+ . -++.+.++.+...+ +=|==+|+++||...-.
T Consensus 93 ~lsHG~~g~i~~~D~-~---v~l~~i~~~f~~~~cpsL~gKPKlf~iQACRG~~~ 143 (259)
T 3sir_A 93 ILSHGEMGYIYAKDT-Q---YKLDNIWSFFTANHCPSLAGKPKLFFIQACQGDRL 143 (259)
T ss_dssp EEECTTCCCCCCTTH-H---HHHHHTTGGGSTTTCGGGSSSCEEEEEEEETTSCE
T ss_pred EecCCCCCeEEeCCC-c---EEHHHHHHHhhhccCccccCCCCEEEEecCCCCcc
Confidence 358999997754332 3 34444444433211 11222789999997553
No 21
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=28.03 E-value=8.2 Score=30.37 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=26.3
Q ss_pred CCCCCCCeeecCCCCccCHHHHHHHHHHHHHhC-ccceEEEEEeccccccc
Q 031297 2 TGHGGDEFLKFQDSEELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAATL 51 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~SgSm 51 (162)
..||..|.|.--|+. +.-++|.+.|.-=+=.. +=|-=+|+|.||+..-.
T Consensus 119 lSHG~~g~I~g~D~~-v~l~~I~~~F~~~~CpsL~gKPKlFfIQACRG~~~ 168 (179)
T 3p45_A 119 LSHGEGNHIYAYDAK-IEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQH 168 (179)
T ss_dssp ESCEETTEEECSSSE-EEHHHHHGGGSGGGCGGGTTSCEEEEEECC-----
T ss_pred eccCCCCEEEEECCE-EEHHHHHHhcccccChhhCCCCcEEEEECCCCCCC
Confidence 469999999988874 66555555443200000 11223678999998543
No 22
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=24.29 E-value=14 Score=30.60 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=27.3
Q ss_pred CCCCCCCeeecCCCC--ccCHHHHHHHHHHHHHhC-ccceEEEEEeccccc
Q 031297 2 TGHGGDEFLKFQDSE--ELQSHDLADAVKQMKEKH-RFKELLIMVDTCQAA 49 (162)
Q Consensus 2 tgHGg~g~l~Fpd~~--~L~a~dL~~~l~~M~~~k-rY~kmvf~vEaC~Sg 49 (162)
.+||..|.|.=-|+. .+.-++|.+.|.-=+=.. +=|-=+|++.||+..
T Consensus 105 lSHG~~g~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~ 155 (272)
T 3h11_A 105 VSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVS 155 (272)
T ss_dssp EEEEETTEECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEEC-
T ss_pred EcCCCCCeEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEECCCCC
Confidence 479999988766654 255565555543200000 112237889999863
Done!