BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031298
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 52/68 (76%)

Query: 75  AFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVT 134
             QT S+VD+LDDGYRWRKYGQKVVK + +PRSYYKCT  GC V+K V+R   D + VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 135 TYEGLHTH 142
           TYEG H H
Sbjct: 67  TYEGKHNH 74


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 53/70 (75%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           R    T++  DI++DGYRWRKYGQK VK S +PRSYY+C+  GC VKK V+R++ D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 133 VTTYEGLHTH 142
           +TTYEG H H
Sbjct: 62  ITTYEGKHDH 71


>pdb|1X3C|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
           Human Zinc Finger Protein 292
          Length = 73

 Score = 26.6 bits (57), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 11/50 (22%)

Query: 96  QKVVKNSKFPRSY-----YKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLH 140
           + V ++ +FP  Y     Y+C H+GC     +Q+N      ++  Y+ +H
Sbjct: 10  KPVSQSLEFPTRYSPYRPYRCVHQGCFAAFTIQQN------LILHYQAVH 53


>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
 pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
           Synthase From Vitis Vinifera Involved In Auxin
           Homeostasis
          Length = 609

 Score = 26.6 bits (57), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 127 KDEEIVVTTYEGLHTHPIGKI 147
           K+ E+V+TTY GL+ + +G I
Sbjct: 397 KEYELVITTYAGLYRYRVGDI 417


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,426,921
Number of Sequences: 62578
Number of extensions: 149687
Number of successful extensions: 314
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)