Query 031298
Match_columns 162
No_of_seqs 160 out of 688
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.2E-37 4.2E-42 222.1 6.7 75 72-146 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.6E-37 5.4E-42 222.5 5.2 75 72-146 4-78 (78)
3 2rpr_A Flywch-type zinc finger 74.8 2.5 8.4E-05 29.0 3.1 51 81-144 20-73 (87)
4 1cz6_A Protein (androctonin); 27.3 13 0.00044 20.8 -0.0 8 107-114 16-23 (26)
5 1xiw_B T-cell surface glycopro 27.1 14 0.00049 25.1 0.2 27 86-112 17-53 (79)
6 1xiw_A T-cell surface glycopro 16.0 42 0.0014 24.5 0.7 27 87-113 34-79 (105)
7 1odh_A MGCM1; transcription fa 14.7 1.1E+02 0.0039 24.2 2.9 21 128-148 140-160 (174)
8 3kgb_A Thymidylate synthase 1/ 11.2 34 0.0012 29.1 -1.2 10 88-97 115-124 (294)
9 3ed7_A Tsase, TS, thymidylate 11.0 34 0.0012 29.2 -1.2 10 88-97 118-127 (295)
10 2qlc_A DNA repair protein RADC 9.0 1.2E+02 0.0042 22.1 1.3 17 139-155 74-90 (126)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-37 Score=222.12 Aligned_cols=75 Identities=52% Similarity=1.034 Sum_probs=72.3
Q ss_pred cceeEEeecccccCCCCccccccCceeccCCCCCcccccccccCcccccceeeecCCCCEEEEEEeccCCCCCCC
Q 031298 72 HRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGK 146 (162)
Q Consensus 72 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~~~ 146 (162)
.|++++|.+++++++|||.|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.6e-37 Score=222.53 Aligned_cols=75 Identities=60% Similarity=1.057 Sum_probs=69.2
Q ss_pred cceeEEeecccccCCCCccccccCceeccCCCCCcccccccccCcccccceeeecCCCCEEEEEEeccCCCCCCC
Q 031298 72 HRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGK 146 (162)
Q Consensus 72 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~~~ 146 (162)
.+++++|.+++++++|||.|||||||.|||+++||+|||||+++|+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999873
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=74.81 E-value=2.5 Score=28.96 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=32.2
Q ss_pred ccccCCCCccccccCceeccCCCCCcccccccc---cCcccccceeeecCCCCEEEEEEeccCCCCC
Q 031298 81 QVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTH---KGCNVKKQVQRNTKDEEIVVTTYEGLHTHPI 144 (162)
Q Consensus 81 ~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~---~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~ 144 (162)
...++-|||.-.+-- . ...+.|.+|+. .+|.|+=.... +. + .-.+.||||.
T Consensus 20 ~~~Lv~~Gy~Y~~~~--~----~~~~~yWrC~~~~~~kCrARi~T~~---~~--~--~~~~~HnH~p 73 (87)
T 2rpr_A 20 GRFLVHESFLYRKEK--A----AGEKVYWMCRDQARLGCRSRAITQG---HR--I--MVMRSHCHQP 73 (87)
T ss_dssp EEEEEETTEEEEEEE--E----CSSCEEEEEGGGTTSCCCCEEEEET---TE--E--EECSCCSSCC
T ss_pred CcEEEECCEEEEeee--c----CCCcEEEEecCCCCCCCCEEEEEcC---CC--E--ECCCCcCCCC
Confidence 345778998765422 1 12468999997 48999744432 21 2 3468899974
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=27.29 E-value=13 Score=20.80 Aligned_cols=8 Identities=63% Similarity=1.530 Sum_probs=6.4
Q ss_pred cccccccc
Q 031298 107 SYYKCTHK 114 (162)
Q Consensus 107 sYYrCt~~ 114 (162)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=27.11 E-value=14 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=18.8
Q ss_pred CCCccccccCcee--------cc--CCCCCccccccc
Q 031298 86 DDGYRWRKYGQKV--------VK--NSKFPRSYYKCT 112 (162)
Q Consensus 86 ~DGy~WRKYGQK~--------ik--gs~~pRsYYrCt 112 (162)
.+++.|-|-|... +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 6678899888642 22 334599999994
No 6
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=15.99 E-value=42 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=18.5
Q ss_pred CCccccccCcee----------------ccCCCC---Ccccccccc
Q 031298 87 DGYRWRKYGQKV----------------VKNSKF---PRSYYKCTH 113 (162)
Q Consensus 87 DGy~WRKYGQK~----------------ikgs~~---pRsYYrCt~ 113 (162)
+...|-|-|+.. ++++-. ||+||.|..
T Consensus 34 ~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 34 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp SCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 457888877653 345533 899999964
No 7
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=14.68 E-value=1.1e+02 Score=24.20 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=14.8
Q ss_pred CCCEEEEEEeccCCCCCCCCC
Q 031298 128 DEEIVVTTYEGLHTHPIGKIT 148 (162)
Q Consensus 128 D~~~~~ttY~G~H~h~~~~~~ 148 (162)
|+..+...-+|.|+||.|...
T Consensus 140 ~~~~ifFqaKG~HDHpRPe~k 160 (174)
T 1odh_A 140 DGRFIFFQSKGEHDHPRPETK 160 (174)
T ss_dssp CSSBEEEEEECCCCSCCCCCH
T ss_pred cCCEEEEecccccCCCCCCCc
Confidence 444455566799999988763
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=11.18 E-value=34 Score=29.12 Aligned_cols=10 Identities=40% Similarity=1.561 Sum_probs=8.2
Q ss_pred CccccccCce
Q 031298 88 GYRWRKYGQK 97 (162)
Q Consensus 88 Gy~WRKYGQK 97 (162)
|++||.+|.+
T Consensus 115 G~QwR~~~~~ 124 (294)
T 3kgb_A 115 GFQWRHFGAR 124 (294)
T ss_dssp HHHHHSBTCC
T ss_pred chhhhcCCCc
Confidence 6899999864
No 9
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=10.95 E-value=34 Score=29.17 Aligned_cols=10 Identities=40% Similarity=1.511 Sum_probs=8.3
Q ss_pred CccccccCce
Q 031298 88 GYRWRKYGQK 97 (162)
Q Consensus 88 Gy~WRKYGQK 97 (162)
|++||.+|.+
T Consensus 118 G~QwR~~~~~ 127 (295)
T 3ed7_A 118 GFQWRHFGAE 127 (295)
T ss_dssp HHHHHHBTCC
T ss_pred hhhhhccCCc
Confidence 6899999864
No 10
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=8.97 E-value=1.2e+02 Score=22.15 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.7
Q ss_pred cCCCCCCCCCCcHHHHH
Q 031298 139 LHTHPIGKITDSFEQIL 155 (162)
Q Consensus 139 ~H~h~~~~~~~~~~~i~ 155 (162)
.||||...++.+-+.|-
T Consensus 74 ~HNHPSG~~~PS~~D~~ 90 (126)
T 2qlc_A 74 VHNHPSGDVQPSNADKQ 90 (126)
T ss_dssp EEECSSSCCSCCHHHHH
T ss_pred EecCCCCCCCCCHHHHH
Confidence 59999988888877653
Done!