BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031299
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 22/132 (16%)
Query: 12 LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD 71
L + K +E+ G D +EV SP RI +G H D+ GG V +I G D
Sbjct: 31 LSALTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLRED 89
Query: 72 TEVVLRSGQFD--GEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYA 129
+V L S F G + F +DE+++ + W NY +G +
Sbjct: 90 KKVKLYSENFPKLGVIEFDLDEVEKKDGEL-------------------WSNYVKGMIVM 130
Query: 130 LQSRGNILTEGI 141
L+ G + +G
Sbjct: 131 LKGAGYEIDKGF 142
>pdb|3PXX|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|E Chain E, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
pdb|3PXX|F Chain F, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Bound To Nicotinamide Adenine
Dinucleotide
Length = 287
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 13 KEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQG 50
+E+ N V+E D VVV+ ICPLGAH+ Q
Sbjct: 88 RELANAVAEFGKLD-----VVVANAGICPLGAHLPVQA 120
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 45 HIDHQGGTVSAMTINKGILLGFVPSGDTEVV-LRSGQFDGE-------VRFRID------ 90
H H GTV+A G++ G P D ++ SG GE +R+ +D
Sbjct: 68 HGTHVAGTVAAAETGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKG 126
Query: 91 --------EIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARG 125
+ PT+S + H AV + S + C GN G
Sbjct: 127 EQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDG 169
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 45 HIDHQGGTVSAMTINKGILLGFVPSGDTEVV-LRSGQFDGE-------VRFRID------ 90
H H GTV+A G++ G P D ++ SG GE +R+ +D
Sbjct: 86 HGTHVAGTVAAAETGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKG 144
Query: 91 --------EIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARG 125
+ PT+S + H AV + S + C GN G
Sbjct: 145 EQMRIITMSLGGPTDSEELHDAVKYAVSNNVSVVCAAGNEGDG 187
>pdb|1RZO|B Chain B, Agglutinin From Ricinus Communis With Galactoaza
pdb|1RZO|D Chain D, Agglutinin From Ricinus Communis With Galactoaza
Length = 262
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRS--GQFDGEVRFR 88
R +++P L A + G ++ T + G++P+ +T+ + + G + ++
Sbjct: 96 RTIINPRSGLVLAATSGNSGTKLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGMCLQ-- 153
Query: 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILT 138
NS K V+ D K E +W YA G++ Q+R N LT
Sbjct: 154 -------ANSGK----VWLEDCTSEKAEQQWALYADGSIRPQQNRDNCLT 192
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 12 LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGA------HIDHQGGTVSAMTINKGILLG 65
L+E+R K+S ++GR A + VVS +C L + +G + M K IL G
Sbjct: 35 LEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQM---KSILSG 91
Query: 66 FVPSGDTEVVLR 77
F + + LR
Sbjct: 92 FYDKMRSALELR 103
>pdb|2AAI|B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms
pdb|3RTI|B Chain B, Crystal Structure Of Ricin Bound With Formycin
Monophosphate
pdb|3RTJ|B Chain B, Crystal Structure Of Ricin Bound With Dinucleotide Apg
Length = 262
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 105 VYASDSAKIKEECKWGNYARGALYALQSRGNILTE 139
V+ D + K E +W YA G++ Q+R N LT
Sbjct: 159 VWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTS 193
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 7 PTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGF 66
P +LKEM N S+ VR +P R+ +G HID+ G +V M + + +L+
Sbjct: 37 PRLLKLKEMFN--SKFGSIPKFYVR---APGRVNIIGEHIDYCGYSVLPMAVEQDVLIAV 91
Query: 67 VP 68
P
Sbjct: 92 EP 93
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 1 MGEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINK 60
MG P ++R S G + EEV V++ Y + I H GGT+ +
Sbjct: 8 MGGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIY-FGKMADVITHHGGTIDEF-MGD 65
Query: 61 GILLGF-VPSGDTEVVLRSGQFDGEVRFRIDEIQQ 94
GIL+ F P+ + LR+ E++ + E+ Q
Sbjct: 66 GILVLFGAPTSQQDDALRAVACGVEMQLALREVNQ 100
>pdb|1ABR|B Chain B, Crystal Structure Of Abrin-A
Length = 267
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 19 VSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRS 78
V+E + + + +++P L A GGT++ T + G+ +T + S
Sbjct: 89 VAEATYWEIWDNGTIINPKSALVLSAESSSMGGTLTVQTNEYLMRQGWRTGNNTSPFVTS 148
Query: 79 GQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILT 138
+ D Q S V+ +D K+E +W Y G++ ++Q+ N LT
Sbjct: 149 ------ISGYSDLCMQAQGS-----NVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCLT 197
Query: 139 E 139
Sbjct: 198 S 198
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 3 EFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSP 36
E+ TE+ +KE VSEM ++ V+ +V+P
Sbjct: 201 EYKETTEESIKETERFVSEMLQKNYSRVKPIVTP 234
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 3 EFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSP 36
E+ TE+ +KE VSEM ++ V+ +V+P
Sbjct: 182 EYKETTEESIKETERFVSEMLQKNYSRVKPIVTP 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,478,619
Number of Sequences: 62578
Number of extensions: 172309
Number of successful extensions: 509
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 19
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)