Query 031299
Match_columns 162
No_of_seqs 104 out of 1039
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02865 galactokinase 100.0 1.3E-35 2.9E-40 255.3 16.0 147 5-162 5-152 (423)
2 COG0153 GalK Galactokinase [Ca 100.0 3.8E-34 8.3E-39 240.9 13.3 129 11-162 5-136 (390)
3 PTZ00290 galactokinase; Provis 100.0 1.5E-31 3.3E-36 232.5 14.3 137 4-162 4-155 (468)
4 PRK05322 galactokinase; Provis 100.0 2.5E-31 5.5E-36 227.0 14.7 130 11-162 2-133 (387)
5 PLN02521 galactokinase 100.0 3.3E-30 7.2E-35 225.9 15.1 132 11-162 31-170 (497)
6 PRK05101 galactokinase; Provis 100.0 1.1E-29 2.4E-34 216.5 15.1 131 10-162 2-133 (382)
7 TIGR00131 gal_kin galactokinas 100.0 5.3E-29 1.2E-33 212.4 14.7 129 13-162 2-131 (386)
8 PRK00555 galactokinase; Provis 100.0 2.4E-28 5.1E-33 207.2 12.7 110 31-162 3-112 (363)
9 PF10509 GalKase_gal_bdg: Gala 99.9 4.2E-24 9E-29 134.0 5.7 52 16-69 1-52 (52)
10 KOG0631 Galactokinase [Carbohy 99.9 2.8E-23 6E-28 178.4 12.6 139 5-162 14-163 (489)
11 PRK03817 galactokinase; Provis 99.9 2.8E-23 6.1E-28 175.1 11.9 106 32-162 2-107 (351)
12 TIGR00549 mevalon_kin mevalona 99.9 6.4E-22 1.4E-26 160.8 7.2 99 35-162 1-99 (273)
13 PRK13412 fkp bifunctional fuco 99.9 2.5E-21 5.5E-26 179.3 10.8 117 27-162 606-747 (974)
14 TIGR01220 Pmev_kin_Gr_pos phos 99.8 7E-20 1.5E-24 155.2 11.1 114 32-162 2-125 (358)
15 PLN02677 mevalonate kinase 99.8 2.1E-18 4.6E-23 147.5 10.6 129 31-162 3-150 (387)
16 PRK03926 mevalonate kinase; Pr 99.7 2.8E-17 6E-22 135.7 9.8 95 31-162 2-96 (302)
17 KOG1511 Mevalonate kinase MVK/ 99.7 4.1E-17 9E-22 135.9 9.6 130 31-162 5-152 (397)
18 COG1577 ERG12 Mevalonate kinas 99.6 8.5E-16 1.9E-20 127.7 7.2 102 32-162 2-104 (307)
19 TIGR00154 ispE 4-diphosphocyti 99.5 1.1E-13 2.4E-18 114.5 9.8 97 31-161 2-106 (293)
20 PRK00128 ipk 4-diphosphocytidy 99.4 7.6E-13 1.6E-17 108.6 9.5 97 31-162 3-105 (286)
21 PRK02534 4-diphosphocytidyl-2- 99.4 2.7E-12 5.7E-17 106.9 11.0 98 31-162 4-107 (312)
22 PTZ00298 mevalonate kinase; Pr 99.3 2.4E-12 5.2E-17 107.9 5.9 101 32-162 12-115 (328)
23 COG2605 Predicted kinase relat 99.3 3.8E-12 8.2E-17 104.4 6.0 101 31-162 2-110 (333)
24 PRK00343 ipk 4-diphosphocytidy 98.9 1.2E-08 2.7E-13 83.6 9.7 94 31-161 7-107 (271)
25 PRK14611 4-diphosphocytidyl-2- 98.5 6.5E-07 1.4E-11 73.4 7.7 91 33-161 4-100 (275)
26 TIGR01219 Pmev_kin_ERG8 phosph 98.3 4.9E-06 1.1E-10 72.9 9.4 58 33-90 2-67 (454)
27 PRK14608 4-diphosphocytidyl-2- 98.1 2.2E-05 4.8E-10 64.9 9.9 98 31-161 7-110 (290)
28 PRK14612 4-diphosphocytidyl-2- 98.0 4.4E-05 9.6E-10 62.6 10.0 93 33-161 5-103 (276)
29 PRK14615 4-diphosphocytidyl-2- 98.0 6.3E-05 1.4E-09 62.5 10.4 95 31-161 7-108 (296)
30 PRK14616 4-diphosphocytidyl-2- 98.0 5E-05 1.1E-09 62.6 9.2 93 32-161 5-103 (287)
31 PRK14609 4-diphosphocytidyl-2- 98.0 5.1E-05 1.1E-09 62.2 8.7 41 118-161 62-102 (269)
32 PRK01123 shikimate kinase; Pro 97.9 4.2E-05 9.2E-10 62.9 8.2 90 37-162 3-96 (282)
33 TIGR01920 Shik_kin_archae shik 97.9 4.7E-05 1E-09 62.1 7.5 70 52-162 15-85 (261)
34 PRK14610 4-diphosphocytidyl-2- 97.8 0.00024 5.3E-09 58.6 9.9 94 31-161 4-104 (283)
35 PLN02451 homoserine kinase 97.7 8.7E-05 1.9E-09 63.6 6.4 96 31-162 54-155 (370)
36 PRK03188 4-diphosphocytidyl-2- 97.7 0.00014 3E-09 60.2 7.4 95 33-161 3-103 (300)
37 PRK00650 4-diphosphocytidyl-2- 97.6 0.00053 1.1E-08 57.0 9.5 38 121-161 62-100 (288)
38 PRK14613 4-diphosphocytidyl-2- 97.6 0.00068 1.5E-08 56.4 9.8 105 34-161 2-113 (297)
39 TIGR00144 beta_RFAP_syn beta-R 97.6 0.00054 1.2E-08 57.6 9.2 95 33-162 3-103 (324)
40 PRK14614 4-diphosphocytidyl-2- 97.5 0.00087 1.9E-08 55.1 10.0 95 32-161 5-105 (280)
41 PRK04181 4-diphosphocytidyl-2- 97.4 0.0011 2.4E-08 54.2 8.2 22 139-161 85-106 (257)
42 COG1685 Archaeal shikimate kin 97.3 0.00096 2.1E-08 54.7 7.6 86 33-162 5-91 (278)
43 PRK05905 hypothetical protein; 97.2 0.005 1.1E-07 50.4 10.5 33 126-161 73-106 (258)
44 PTZ00299 homoserine kinase; Pr 97.2 0.001 2.3E-08 56.3 6.7 93 31-161 8-102 (336)
45 TIGR00191 thrB homoserine kina 97.2 0.0014 3.1E-08 54.3 7.0 37 123-161 63-100 (302)
46 COG0083 ThrB Homoserine kinase 97.1 0.0015 3.3E-08 54.5 6.3 94 31-161 4-97 (299)
47 KOG4644 L-fucose kinase [Carbo 96.6 0.0052 1.1E-07 54.9 6.0 30 31-60 572-608 (948)
48 PRK01212 homoserine kinase; Pr 96.5 0.0075 1.6E-07 49.7 6.4 93 31-161 4-101 (301)
49 TIGR01240 mevDPdecarb diphosph 96.0 0.0085 1.8E-07 50.1 4.1 40 120-161 66-105 (305)
50 COG1947 IspE 4-diphosphocytidy 95.5 0.19 4.1E-06 41.9 10.0 36 121-159 67-103 (289)
51 COG3890 ERG8 Phosphomevalonate 91.7 0.14 3.1E-06 42.5 2.6 31 33-63 6-37 (337)
52 PLN02407 diphosphomevalonate d 90.0 0.26 5.7E-06 42.0 2.7 19 142-161 105-125 (343)
53 KOG4519 Phosphomevalonate kina 88.6 0.8 1.7E-05 39.2 4.6 52 32-83 4-62 (459)
54 COG3407 MVD1 Mevalonate pyroph 88.5 0.6 1.3E-05 39.6 3.8 39 120-161 71-110 (329)
55 COG4542 PduX Protein involved 85.9 0.76 1.7E-05 37.8 2.9 22 139-161 82-103 (293)
56 COG1829 Predicted archaeal kin 83.0 6.8 0.00015 32.5 7.3 86 32-161 4-94 (283)
57 TIGR00568 alkb DNA alkylation 57.9 77 0.0017 24.2 7.5 62 4-67 67-137 (169)
58 KOG2833 Mevalonate pyrophospha 54.7 10 0.00023 32.3 2.4 21 140-161 105-125 (395)
59 KOG0180 20S proteasome, regula 52.8 20 0.00044 27.9 3.5 37 47-83 5-41 (204)
60 PF12098 DUF3574: Protein of u 45.9 33 0.00073 24.3 3.5 29 10-40 75-103 (104)
61 PRK15401 alpha-ketoglutarate-d 42.1 1.8E+02 0.0038 23.2 8.1 62 4-67 88-158 (213)
62 COG1228 HutI Imidazolonepropio 38.9 26 0.00057 30.5 2.5 40 31-70 30-79 (406)
63 PF14982 UPF0731: UPF0731 fami 32.6 21 0.00045 23.6 0.7 15 146-161 17-31 (79)
64 cd01791 Ubl5 UBL5 ubiquitin-li 31.6 54 0.0012 21.3 2.6 31 7-38 19-49 (73)
65 PF02866 Ldh_1_C: lactate/mala 28.8 51 0.0011 24.7 2.4 28 13-47 6-33 (174)
66 PF09349 OHCU_decarbox: OHCU d 25.0 72 0.0016 23.9 2.6 25 10-38 97-121 (159)
67 PF10319 7TM_GPCR_Srj: Serpent 24.6 1.1E+02 0.0024 25.8 3.9 27 4-30 153-179 (310)
68 PF07830 PP2C_C: Protein serin 24.3 37 0.00081 22.9 0.8 10 148-158 61-70 (81)
69 KOG3243 6,7-dimethyl-8-ribityl 22.7 1.5E+02 0.0032 22.2 3.7 31 10-41 34-64 (158)
70 PF13594 Amidohydro_5: Amidohy 22.5 57 0.0012 20.4 1.4 20 46-65 25-44 (68)
71 smart00335 ANX Annexin repeats 22.4 1.1E+02 0.0024 17.8 2.7 21 8-28 15-35 (53)
No 1
>PLN02865 galactokinase
Probab=100.00 E-value=1.3e-35 Score=255.33 Aligned_cols=147 Identities=73% Similarity=1.185 Sum_probs=121.7
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCe
Q 031299 5 SWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE 84 (162)
Q Consensus 5 ~~~~~~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~ 84 (162)
.||....++++++.|.+.||.+|+...+++||||||||||||||+||.||||||+++|+++++++++++++|+|.++++.
T Consensus 5 ~~~~~~~~~~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~ 84 (423)
T PLN02865 5 SWPSANELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGE 84 (423)
T ss_pred CCccHHHHHHHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCc
Confidence 69988888899999999999999633579999999999999999999999999999999999999999999999888655
Q ss_pred eEEEcCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEccc-CCCCCCcccccCC
Q 031299 85 VRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSD-NLDSSGLSSSAAC 162 (162)
Q Consensus 85 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~i-P~~gsGLsSSAAl 162 (162)
++|+++.+.++.. ...+ ...+...|++|++|++..|.+.|.....||++.|+|++ |+ ++||||||||
T Consensus 85 ~~~~~~~~~~~~~--------~~~~--~~~~~~~W~~Yv~gv~~~l~~~g~~~~~G~~~~v~g~vpP~-gsGLsSSAAl 152 (423)
T PLN02865 85 VRFRVDEIQHPIA--------NVSS--DSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGLD-SSGLSSSAAV 152 (423)
T ss_pred eEEeccccccccc--------cccc--cCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEEECCCCCC-CCcccHHHHH
Confidence 6777765322100 0000 11245789999999999999888765369999999999 56 9999999985
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-34 Score=240.89 Aligned_cols=129 Identities=30% Similarity=0.436 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhCC-CCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCe-eEEE
Q 031299 11 ELKEMRNKVSEMSGR-DAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE-VRFR 88 (162)
Q Consensus 11 ~~~~~~~~f~~~fg~-~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~-~~~~ 88 (162)
..+++.+.|.+.|+. +|. ..++||||||||||||||+||+|||||||.+|++++++++|.+++++|.+++.. ..+.
T Consensus 5 ~~~~~~~~f~~~f~~~~~~--~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n~~~~~~~~~ 82 (390)
T COG0153 5 LKEKLQALFAEHFGYVEPT--VTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAGDIFF 82 (390)
T ss_pred HHHHHHHHHHHHhcccCcc--eEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCCCccccceee
Confidence 356788899999996 776 779999999999999999999999999999999999999999999999998732 2333
Q ss_pred -cCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 89 -IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 89 -l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
++++.. .+..+|+||++|++..|+..|+.+ .||+++|.|+||. |+||||||||
T Consensus 83 ~~~d~~~-------------------~~~~~W~nYvkgvi~~l~~~g~~~-~G~~i~i~gnIP~-GaGLSSSAAl 136 (390)
T COG0153 83 LLLDIAK-------------------EKIDDWANYVKGVIKALQKRGYAF-TGLDIVISGNIPI-GAGLSSSAAL 136 (390)
T ss_pred cchhhcc-------------------cccchhhhhHHHHHHHHHhcCCCc-CCeeEEEecCCCC-CCCcCchHHH
Confidence 333322 356899999999999999999999 6999999999998 9999999986
No 3
>PTZ00290 galactokinase; Provisional
Probab=99.97 E-value=1.5e-31 Score=232.49 Aligned_cols=137 Identities=22% Similarity=0.353 Sum_probs=107.1
Q ss_pred CCCCCh---HHHHHHHHHHHHHhCCCCcc----eEEEEccceeeccccccccCCceeEEeeeccceEEEEEEc---CCCe
Q 031299 4 FSWPTE---DELKEMRNKVSEMSGRDAEE----VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS---GDTE 73 (162)
Q Consensus 4 ~~~~~~---~~~~~~~~~f~~~fg~~p~~----~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~---~~~~ 73 (162)
-+|.++ +.++++++.|.+.||.+|+. ..+++||||||||||||||+||.||||||+++|+++++++ ++++
T Consensus 4 ~~~~~~~~~~~~~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~ 83 (468)
T PTZ00290 4 ESYSDERLDSTLSTLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHK 83 (468)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCe
Confidence 345544 33688999999999999941 1678999999999999999999999999999999999876 5577
Q ss_pred EEEEeCCCCCeeEEEcCCCCCCccccccccccccccccccccccCHHHHHHHHHHH-HHHcCCCC----CCcEEEEEEcc
Q 031299 74 VVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYA-LQSRGNIL----TEGIIGYICGS 148 (162)
Q Consensus 74 i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~-l~~~g~~~----~~G~~i~i~s~ 148 (162)
+++.+. ..+ .|+++..... .....|++|++|++.. +++.|..+ ..||+++|.|+
T Consensus 84 i~~~~~-~~~--~~~~~~~~~~------------------~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d~~i~gd 142 (468)
T PTZ00290 84 LRFATE-TDE--HFVLDHLGGA------------------KHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGT 142 (468)
T ss_pred EEEEEC-CCc--eeecCccccc------------------CCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeEEEEeCC
Confidence 888543 332 3444432111 2457899999999986 66567642 15999999999
Q ss_pred cCCCCCCcccccCC
Q 031299 149 DNLDSSGLSSSAAC 162 (162)
Q Consensus 149 iP~~gsGLsSSAAl 162 (162)
||+ |+||||||||
T Consensus 143 VP~-GaGLSSSAAl 155 (468)
T PTZ00290 143 LPM-GAGMSASASF 155 (468)
T ss_pred CCC-CCCcchHHHH
Confidence 998 9999999985
No 4
>PRK05322 galactokinase; Provisional
Probab=99.97 E-value=2.5e-31 Score=227.01 Aligned_cols=130 Identities=34% Similarity=0.488 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC--eeEEE
Q 031299 11 ELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG--EVRFR 88 (162)
Q Consensus 11 ~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~--~~~~~ 88 (162)
.++++++.|.+.||.+|+ .+++|||||||+|||+||+||+|||+||++++++++++++++++++.+.+++. .+.++
T Consensus 2 ~~~~~~~~f~~~fg~~p~--~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~ 79 (387)
T PRK05322 2 MKEELKKKFAEVFGEEAE--DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFD 79 (387)
T ss_pred hHHHHHHHHHHHhCCCCc--eEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEEECCCCCCceEEEe
Confidence 467899999999999997 77999999999999999999999999999999999999999999999888752 35566
Q ss_pred cCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 89 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
++++.. .....|.+|++|++..+.+.+..+..||++.|.|+||+ |+|||||||+
T Consensus 80 ~~~~~~-------------------~~~~~w~~y~~gvi~~l~~~~~~~~~g~~i~i~s~iP~-gsGLgSSAA~ 133 (387)
T PRK05322 80 LDDLSF-------------------DKEDDWANYPKGVLKFLQEAGYKIDHGFDILIYGNIPN-GAGLSSSASI 133 (387)
T ss_pred ccccCC-------------------CCccchHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC-CCCccHHHHH
Confidence 655432 24577999999999999887765436999999999998 9999999985
No 5
>PLN02521 galactokinase
Probab=99.97 E-value=3.3e-30 Score=225.91 Aligned_cols=132 Identities=27% Similarity=0.352 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCC-CeEEEEeCCCCC-eeEEE
Q 031299 11 ELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-TEVVLRSGQFDG-EVRFR 88 (162)
Q Consensus 11 ~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~-~~i~i~s~~~~~-~~~~~ 88 (162)
.++++++.|.+.||.+|+ .+++|||||||||||+|||||+||||||+++++++++++++ +.+++.+.+.+. ...++
T Consensus 31 r~~~l~~~F~~~fg~~p~--~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~~~~~~~~~ 108 (497)
T PLN02521 31 RYARLKAAFVEVYGAKPD--LFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVNDKYTTCTFP 108 (497)
T ss_pred HHHHHHHHHHHHHCCCCC--EEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCCCCCceeee
Confidence 457889999999999998 78999999999999999999999999999999999999987 789998876542 23455
Q ss_pred cCCCCCCccccccccccccccccccccccCHHHHH----HHHHHHHHHcCCCC--CCcEEEEEEcccCCCCCCcccccCC
Q 031299 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYA----RGALYALQSRGNIL--TEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 89 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~----~gvl~~l~~~g~~~--~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
++..... ......|.+|+ +|++..+.+.+..+ ..||++.|.|+||+ |+|||||||+
T Consensus 109 ~~~~~~~-----------------~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~-gsGLgSSAA~ 170 (497)
T PLN02521 109 ADPDQEV-----------------DLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPT-GSGLSSSAAL 170 (497)
T ss_pred cCccccc-----------------ccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCC-CCCcchHHHH
Confidence 5432110 02456799999 89999998876543 14999999999998 9999999985
No 6
>PRK05101 galactokinase; Provisional
Probab=99.97 E-value=1.1e-29 Score=216.54 Aligned_cols=131 Identities=25% Similarity=0.367 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEE
Q 031299 10 DELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFR 88 (162)
Q Consensus 10 ~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~-~~~~~ 88 (162)
++.+++++.|.+.||.+|+ .+++|||||||+|||+||+||+||++|||+++++.+++++++.+++.+.+++. ...++
T Consensus 2 ~~~~~~~~~f~~~fg~~p~--~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~s~~~~~~~~~~~ 79 (382)
T PRK05101 2 SLKQKTQSLFAQQFGYPPT--HTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYDNQQDEFS 79 (382)
T ss_pred cHHHHHHHHHHHHhCCCCC--eEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEEECCCCCCceEEe
Confidence 3568899999999999997 78999999999999999999999999999999999999999899998877642 34566
Q ss_pred cCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 89 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
++..... .....|.+|+++++..+...+... .||++.|.++||+ |+|||||||+
T Consensus 80 ~~~~~~~------------------~~~~~w~~yv~~~~~~l~~~~~~~-~g~~i~i~~~iP~-gaGLgSSAA~ 133 (382)
T PRK05101 80 LDAPIVP------------------HPEQQWANYVRGVVKHLQERNPDF-GGADLVISGNVPQ-GAGLSSSASL 133 (382)
T ss_pred cCccccc------------------CCCCchHHHHHHHHHHHHHhCCCC-CCeEEEEeCCCCC-CCCcchHHHH
Confidence 6541111 256789999999999998776555 6999999999998 9999999984
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.96 E-value=5.3e-29 Score=212.38 Aligned_cols=129 Identities=26% Similarity=0.305 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEEcCC
Q 031299 13 KEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFRIDE 91 (162)
Q Consensus 13 ~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~-~~~~~l~~ 91 (162)
+++++.|.+.||.+|+ ++++|||||||+|||+||+||+||++||++++++.++++++..+++.+.+++. ...++++.
T Consensus 2 ~~~~~~f~~~fg~~p~--~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 79 (386)
T TIGR00131 2 ESIQKIFASAFGAKPD--FTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAERSLDL 79 (386)
T ss_pred hHHHHHHHHHHCCCCC--EEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEEEECCCCCcceEEECCC
Confidence 4578999999999997 78999999999999999999999999999999999999999889998877652 23344432
Q ss_pred CCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 92 IQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
...+ .....|.+|+++++..+.+.+.....||++.|.++||+ ++|||||||+
T Consensus 80 ~~~~------------------~~~~~w~~y~~~~~~~~~~~~~~~~~g~~i~i~s~iP~-gsGLgSSAA~ 131 (386)
T TIGR00131 80 PLDG------------------SEVSDWANYFKGVLHVAQERFNSFPLGADIVCSGNVPT-GSGLSSSAAF 131 (386)
T ss_pred CCCC------------------CCCCCcHhHHHHHHHHHHHhcCCCCCceEEEEECCCCC-CCCcchHHHH
Confidence 1111 23579999999999999887654435999999999998 9999999984
No 8
>PRK00555 galactokinase; Provisional
Probab=99.96 E-value=2.4e-28 Score=207.23 Aligned_cols=110 Identities=28% Similarity=0.427 Sum_probs=96.6
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
.+++|||||||||||+|||||+|||+|||+++++.+++++++++++.+.+++..++++++...
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~----------------- 65 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADGSARIPLDTTP----------------- 65 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEecCCCC-----------------
Confidence 468999999999999999999999999999999999999999999999887655566555321
Q ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 111 AKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
.....|.+|++|++..|++.+..+ .|+++.|.|+||+ ++|||||||+
T Consensus 66 ---~~~~~w~~y~~gv~~~l~~~g~~~-~g~~i~i~s~iP~-g~GLgSSAA~ 112 (363)
T PRK00555 66 ---GQVTGWAAYAAGVIWALRGAGHPV-PGGAMSITSDVEI-GSGLSSSAAL 112 (363)
T ss_pred ---CCCcchHHHHHHHHHHHHHcCCCC-CCeEEEEecCCCC-CCCccHHHHH
Confidence 245789999999999999888776 6999999999998 9999999985
No 9
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.90 E-value=4.2e-24 Score=133.99 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEc
Q 031299 16 RNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS 69 (162)
Q Consensus 16 ~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~ 69 (162)
++.|++.||.+|+ .+++||||||||||||||+||.||||||+++|++++++|
T Consensus 1 ~~~F~~~fg~~p~--~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 1 KEEFEEFFGEEPE--VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp -HHHHHHHSS--S--EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred ChhHHHHhCCCCC--EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 5789999999998 689999999999999999999999999999999999986
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.8e-23 Score=178.36 Aligned_cols=139 Identities=29% Similarity=0.338 Sum_probs=105.5
Q ss_pred CCCChHHHH--HHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCC
Q 031299 5 SWPTEDELK--EMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD 82 (162)
Q Consensus 5 ~~~~~~~~~--~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~ 82 (162)
.||..-.++ +....|.+.|+.+|+ .++++||||||||||+||+|+.|+|||||..+.+.+.++++..+.|...+++
T Consensus 14 ~~P~~~~~k~l~~~~~~~~~~~~kp~--~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~ 91 (489)
T KOG0631|consen 14 SLPRLLILKVLKEAGAFQAAYGAKPV--FVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFN 91 (489)
T ss_pred hCCcHHHHHHHHHHHHHHHhhCCCce--EEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCceeEEEecCC
Confidence 467664443 335678899999998 8899999999999999999999999999999999999999988566666665
Q ss_pred Ce---eEEEcCCCCCCccccccccccccccccccccccCHHHHH----HHHHHHHHHcCCCCC--CcEEEEEEcccCCCC
Q 031299 83 GE---VRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYA----RGALYALQSRGNILT--EGIIGYICGSDNLDS 153 (162)
Q Consensus 83 ~~---~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~----~gvl~~l~~~g~~~~--~G~~i~i~s~iP~~g 153 (162)
.. .++.++...+. ......+|.+|+ +|+...++..+.... .|+.+...+++|. |
T Consensus 92 ~~f~~~~~~~p~~~~~----------------I~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPt-g 154 (489)
T KOG0631|consen 92 PDFIYFKYPLPSIVWQ----------------IDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPT-G 154 (489)
T ss_pred CccceeeccCCchhcc----------------cCCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCC-C
Confidence 32 34444431110 113678999999 666666633333222 4999999999998 9
Q ss_pred CCcccccCC
Q 031299 154 SGLSSSAAC 162 (162)
Q Consensus 154 sGLsSSAAl 162 (162)
+|||||||+
T Consensus 155 sgLsSsaa~ 163 (489)
T KOG0631|consen 155 SGLSSSAAW 163 (489)
T ss_pred CCcchhHHH
Confidence 999999874
No 11
>PRK03817 galactokinase; Provisional
Probab=99.90 E-value=2.8e-23 Score=175.07 Aligned_cols=106 Identities=30% Similarity=0.525 Sum_probs=91.2
Q ss_pred EEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccccc
Q 031299 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSA 111 (162)
Q Consensus 32 ~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 111 (162)
.++|||||+|+|||+||+||++|++|||+++++.++++ +.+++.+.+++...+++++++.
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~~~------------------ 61 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS--EKFIFYSENFNEEKTFELDKLE------------------ 61 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC--CeEEEEECCCCCcEEEeCCccC------------------
Confidence 47999999999999999999999999999999999886 3578888778755667765532
Q ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 112 KIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 112 ~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....|.+|+++++..+.+.+... .||++.|.++||+ ++|||||||+
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~iP~-~~GLgSSaa~ 107 (351)
T PRK03817 62 ---KLNSWADYIKGVIWVLEKRGYEV-GGVKGKVSSNLPI-GAGLSSSASL 107 (351)
T ss_pred ---CCCchHHHHHHHHHHHHHcCCCC-CCeEEEEeCCCCC-CCCcCcHHHH
Confidence 35689999999999998777665 6999999999998 9999999984
No 12
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.86 E-value=6.4e-22 Score=160.79 Aligned_cols=99 Identities=23% Similarity=0.166 Sum_probs=78.8
Q ss_pred ccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccccccc
Q 031299 35 SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIK 114 (162)
Q Consensus 35 APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 114 (162)
|||||+|+|||+||+||+||++|||+++++.+++++++ +++.+..++. ...... .
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~i~~~~~~~----~~~~~~--------------------~ 55 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SFIESDLGRG----SLDDAP--------------------Q 55 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ceEeccccCC----cHhHhh--------------------H
Confidence 79999999999999999999999999999999998776 6666544421 111110 1
Q ss_pred cccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 115 EECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 115 ~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....|.+|+++++..+.+.+ . .+|++.+.++||+ ++|||||||+
T Consensus 56 ~~~~~~~~v~~~l~~~~~~~--~-~~~~i~i~s~iP~-g~GLGSSaa~ 99 (273)
T TIGR00549 56 ELDGLVSYIAEALSYFSELN--P-PPLEIEIDSEIPP-GRGLGSSAAV 99 (273)
T ss_pred HHHHHHHHHHHHHHHhhccC--C-CCEEEEEecCCCC-CCCccHHHHH
Confidence 35679999999999887532 2 3699999999998 9999999984
No 13
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.85 E-value=2.5e-21 Score=179.28 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=91.6
Q ss_pred CcceEEEEccceeeccccccc------cCCceeEEeeeccc----eEEEEEEcCCCeEEEEeCCCCCeeEEEc-CCCCCC
Q 031299 27 AEEVRVVVSPYRICPLGAHID------HQGGTVSAMTINKG----ILLGFVPSGDTEVVLRSGQFDGEVRFRI-DEIQQP 95 (162)
Q Consensus 27 p~~~~~v~APGRv~L~GEH~D------y~gg~vl~~Ai~~~----~~v~~~~~~~~~i~i~s~~~~~~~~~~l-~~l~~~ 95 (162)
++.+.+++|||||||+||||| |+||.||++||+++ +++.++++++.++++++.+++....++. +++...
T Consensus 606 ~~~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~~ 685 (974)
T PRK13412 606 SDQIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRDY 685 (974)
T ss_pred cCcEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhccc
Confidence 456677799999999999999 99999999999997 9999999999999999998864433443 333221
Q ss_pred ccccccccccccccccccccccCHHHHHHHHHH--------------HHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 96 TNSVKKHHAVYASDSAKIKEECKWGNYARGALY--------------ALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~--------------~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
....+|.+|++|++. .+++.......||++.|.|+||+ |+|||||||
T Consensus 686 ------------------~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~-GsGLGSSAA 746 (974)
T PRK13412 686 ------------------KKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGIEITLLAAIPA-GSGLGTSSI 746 (974)
T ss_pred ------------------ccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCeEEEEecCCCC-CCCccHHHH
Confidence 245789999999875 22221111225999999999998 999999998
Q ss_pred C
Q 031299 162 C 162 (162)
Q Consensus 162 l 162 (162)
+
T Consensus 747 l 747 (974)
T PRK13412 747 L 747 (974)
T ss_pred H
Confidence 5
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.82 E-value=7e-20 Score=155.22 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=86.3
Q ss_pred EEEccceeeccccccccC-CceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEEcCCCCCCcccccccccccccc
Q 031299 32 VVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 32 ~v~APGRv~L~GEH~Dy~-gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
+++|||||+|+|||+||+ |.++|++||++++++.++++++..++|.+.+++. ...++.+......
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~------------- 68 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVIISSDLGPQPVGWRRHDGRLVV------------- 68 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEEEecCCCCCceEEEecCCceee-------------
Confidence 478999999999999999 6679999999999999999988778888877752 3444443211000
Q ss_pred ccccccccCHHHHHHHHHHHHH----HcCCCCCCcEEEEEEcccCCCC----CCcccccCC
Q 031299 110 SAKIKEECKWGNYARGALYALQ----SRGNILTEGIIGYICGSDNLDS----SGLSSSAAC 162 (162)
Q Consensus 110 ~~~~~~~~~w~~y~~gvl~~l~----~~g~~~~~G~~i~i~s~iP~~g----sGLsSSAAl 162 (162)
.......|.+|+++++..+. ..+..+ .||++.|.|++|+ + +|||||||+
T Consensus 69 --~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~-~~g~k~GLGSSAA~ 125 (358)
T TIGR01220 69 --RDPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDE-ADGRKYGLGSSGAV 125 (358)
T ss_pred --cccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCC-cCCCCCCccHHHHH
Confidence 00124579999999987653 334555 5999999999997 5 599999984
No 15
>PLN02677 mevalonate kinase
Probab=99.77 E-value=2.1e-18 Score=147.49 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=78.3
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcC----CCeEEEEeCCCCCeeEEEcCCCCCCccc---cc-cc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG----DTEVVLRSGQFDGEVRFRIDEIQQPTNS---VK-KH 102 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~----~~~i~i~s~~~~~~~~~~l~~l~~~~~~---~~-~~ 102 (162)
+.++|||||+|+|||+||+|++++++||++++++.+++++ .+.+.+.-.|.+...+++++++...... .. ..
T Consensus 3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLGTPCPST 82 (387)
T ss_pred eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhcccccccccc
Confidence 4689999999999999999999999999999999999753 3455554445544566666654322100 00 00
Q ss_pred cccccccc------c-cc--cc-ccCH-HHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 103 HAVYASDS------A-KI--KE-ECKW-GNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 103 ~~~~~~~~------~-~~--~~-~~~w-~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
...+..+. + .. .+ ..++ .+.+.++++.+...- .. .++++.|.|+||+ |+|||||||+
T Consensus 83 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~-~~-~~~~i~I~S~lP~-GaGLGSSAAv 150 (387)
T PLN02677 83 PTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSIL-GF-NPATVVVTSELPL-GSGLGSSAAF 150 (387)
T ss_pred ccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhc-cC-CCeEEEEEccCCC-CCCccHHHHH
Confidence 00000000 0 00 00 0011 111234444443321 23 5899999999998 9999999985
No 16
>PRK03926 mevalonate kinase; Provisional
Probab=99.72 E-value=2.8e-17 Score=135.66 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=75.1
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
+.++|||||+|+|||+||+||.+|++||++++++.++++++. +++.+ ...
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~-~~i~~-~~~---------------------------- 51 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS-IYIES-DYG---------------------------- 51 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc-eEEec-ccc----------------------------
Confidence 458999999999999999999999999999999999887543 44321 110
Q ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 111 AKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....|..|++.++..+.+.. .. .|+++.|.++||+ ++|||||||+
T Consensus 52 ----~~~~~~~~~~~~~~~~~~~~-~~-~g~~i~i~~~iP~-~~GLGSSsA~ 96 (302)
T PRK03926 52 ----KTGEKHPYVSAAIEKMREEA-DK-DGVTVSITSQIPV-GSGLGSSAAV 96 (302)
T ss_pred ----cccchhHHHHHHHHHHHHhc-CC-CCeEEEEecCCCC-CCCccHHHHH
Confidence 01146778888888877652 23 5999999999998 9999999973
No 17
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.71 E-value=4.1e-17 Score=135.95 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=82.4
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc--ccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV--YAS 108 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~ 108 (162)
+.++|||+|+|+|||+++||+++++++||+|||+.+.+..++++.+.-.|..-+..|++.++....+.+.-.++. .+.
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~l~di~~~~~w~l~~~~~~l~~~~~~~~~~q~p~ 84 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDISIEKAWSLADFNGALPEQRSTYESVQTPA 84 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEecccCCceEEEEhhhhhhhhhhhhhhhhccCCcc
Confidence 579999999999999999999999999999999999888777777765666656788888744322111100100 000
Q ss_pred c-c-----------cccccccCHHHHHHHHHHHHHHcCCCCCCc----EEEEEEcccCCCCCCcccccCC
Q 031299 109 D-S-----------AKIKEECKWGNYARGALYALQSRGNILTEG----IIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 109 ~-~-----------~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G----~~i~i~s~iP~~gsGLsSSAAl 162 (162)
+ . .+...+..-..-+.++++.|.-.-.+. .| +++.|.|++|+ |+|||||||+
T Consensus 85 ~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~-~g~lp~~~v~v~SelP~-GaGLGSSAa~ 152 (397)
T KOG1511|consen 85 SEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRA-PGTLPALTVVVDSELPL-GAGLGSSAAI 152 (397)
T ss_pred hhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcc-cCCCcceEEEEeccCCC-cCCcchhHHH
Confidence 0 0 000011111111123333332111111 34 89999999999 9999999985
No 18
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.62 E-value=8.5e-16 Score=127.75 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=78.6
Q ss_pred EEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccccc
Q 031299 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSA 111 (162)
Q Consensus 32 ~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 111 (162)
.++|||++.|+|||++++|.+++++||++++++.++..++..+.+.+.++... .+..+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~~~------~~~~~---------------- 59 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLKSS------TLERD---------------- 59 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEEEeccCCCCc------ccccc----------------
Confidence 37899999999999999999999999999999999999887888887666522 11100
Q ss_pred ccccccCHHHHHHHHHHHHHHcCC-CCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 112 KIKEECKWGNYARGALYALQSRGN-ILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 112 ~~~~~~~w~~y~~gvl~~l~~~g~-~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
.. ..|+..++..+.+... ....||++.|+|++|+ ++|||||||+
T Consensus 60 ---~~---~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~-g~GLGSSAAV 104 (307)
T COG1577 60 ---ED---EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPI-GAGLGSSAAV 104 (307)
T ss_pred ---cc---chHHHHHHHHHHHHhcccCCCCeEEEEecCCCC-CCCccHHHHH
Confidence 01 1666666666554311 1227999999999998 9999999985
No 19
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.50 E-value=1.1e-13 Score=114.51 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=74.8
Q ss_pred EEEEccceeecccccccc-CCce----eEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDH-QGGT----VSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy-~gg~----vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
++++|||||||+|+|++| .+|+ +++++|+++.++.+++++++.+++.+.+.+ + +
T Consensus 2 ~~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~~~---------~--~---------- 60 (293)
T TIGR00154 2 HVFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGDFD---------V--P---------- 60 (293)
T ss_pred ceEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCCCC---------C--C----------
Confidence 357999999999999998 7777 999999999999999887766777543211 1 0
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHc-CCC--CCCcEEEEEEcccCCCCCCcccccC
Q 031299 106 YASDSAKIKEECKWGNYARGALYALQSR-GNI--LTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~--~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
..+ +|+..++..+.+. +.. ...|+++.|.++||+ ++|||||||
T Consensus 61 ----------~~~--nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~-~aGLGsssa 106 (293)
T TIGR00154 61 ----------LEE--NLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPM-GAGLGGGSS 106 (293)
T ss_pred ----------CCC--cHHHHHHHHHHHHhcccccCCCCeEEEEeccCCC-CCCcchhHH
Confidence 011 7787888877665 311 125999999999998 999999987
No 20
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.43 E-value=7.6e-13 Score=108.63 Aligned_cols=97 Identities=20% Similarity=0.126 Sum_probs=73.3
Q ss_pred EEEEccceeec----cccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv~L----~GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
+.++||||||| +|+|.| ||...++++||+++.++.+++.+++.+++..... .+
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~~~i~~~~~---------~~------------- 60 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDGIVVESNNR---------YV------------- 60 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCCEEEEeCCC---------CC-------------
Confidence 45889999999 899999 9999999999999999999987655566643211 00
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 106 YASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
...|.+++..++..+.+. +.. .|+++.|.++||+ ++|||||||.
T Consensus 61 ----------~~~~~n~~~~~~~~~~~~~~~~--~~~~i~i~~~iP~-~~GLGSSsa~ 105 (286)
T PRK00128 61 ----------PNDERNLAYKAAKLLKERYNIK--QGVSITIDKNIPV-AAGLAGGSSD 105 (286)
T ss_pred ----------CCCCCcHHHHHHHHHHHhcCCC--CCeEEEEEcCCCc-cccchHHHHH
Confidence 012344565666665554 332 6899999999998 9999999973
No 21
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.40 E-value=2.7e-12 Score=106.88 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=74.5
Q ss_pred EEEEccceeec----cccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv~L----~GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
+.++||||||| +|+|.| |+.+.++.++|+++.++.+++++++.+++.+.. . .+.
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~~~~~~~~-~--------~~~------------ 62 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGTIRLHCDH-P--------QLS------------ 62 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCcEEEEECC-C--------CCC------------
Confidence 44789999999 799999 999999999999999999998776556654321 0 111
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 106 YASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....+++..++..+.+. +... .||++.|.++||+ ++|||||||.
T Consensus 63 -----------~~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~-~~GLGSssa~ 107 (312)
T PRK02534 63 -----------TDDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPI-GAGLAGGSTD 107 (312)
T ss_pred -----------CCchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCC-cCCccHHHHH
Confidence 01245666666666654 5443 5899999999998 9999999973
No 22
>PTZ00298 mevalonate kinase; Provisional
Probab=99.31 E-value=2.4e-12 Score=107.93 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=63.9
Q ss_pred EEEccceeeccccccccCCceeEEeeeccceEEEEEEcC-CCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 32 ~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~-~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
...|||||.|||||.|+||.+++..+|+++..+.+...+ ++.+.+... .. .+..
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~~~~~~~~~-~~-----~~~~------------------- 66 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGVPGLQVVDQ-RP-----AVPG------------------- 66 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCCCCceeccc-cc-----cccc-------------------
Confidence 468999999999999999999999999998666665433 222222111 00 0000
Q ss_pred cccccccCHHHHHHHHHHHHHH-cCCCC-CCcEEEEEEcccCCCCCCcccccCC
Q 031299 111 AKIKEECKWGNYARGALYALQS-RGNIL-TEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~-~g~~~-~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....-.+.+..+...+.+ .+... ..|+++.|.++||+ ++|||||||+
T Consensus 67 ----~~~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~-gaGLGSSsA~ 115 (328)
T PTZ00298 67 ----YIVEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVP-SSGIGASASD 115 (328)
T ss_pred ----hHHHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCC-CCCchHHHHH
Confidence 000112333333333332 24321 14999999999998 9999999974
No 23
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.30 E-value=3.8e-12 Score=104.44 Aligned_cols=101 Identities=27% Similarity=0.258 Sum_probs=70.1
Q ss_pred EEEEccceeecccccccc------CCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHA 104 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy------~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 104 (162)
.+.+||-||.|.|..||+ +||.||.++||+++|+.+.++-+.+|++. ++.. -.+++...
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~---~~~~--~~v~~~~~---------- 66 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR---YDRT--EFVKSYLE---------- 66 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe---cchH--HhhhhhHh----------
Confidence 357899999999999999 99999999999999999999988888875 2211 01111100
Q ss_pred cccccccccccccCHHHHHHHHHHH-HHH-cCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 105 VYASDSAKIKEECKWGNYARGALYA-LQS-RGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 105 ~~~~~~~~~~~~~~w~~y~~gvl~~-l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
..++ ..++.++.. +.. .|. ..+++...+|+|+ |+|||||+|+
T Consensus 67 ----------~~h~--~~~~~~l~r~~l~~~g~---~~~el~~~~D~P~-GSGLGSSSa~ 110 (333)
T COG2605 67 ----------NEHK--PLVVESLKRDFLEFNGG---TPIELHTQSDAPP-GSGLGSSSAF 110 (333)
T ss_pred ----------hcCc--hHHHHHHHHHHHhhcCC---CceEEEEecCCCC-CCCCCchHHH
Confidence 1111 223344442 222 121 2289999999998 9999999975
No 24
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.89 E-value=1.2e-08 Score=83.59 Aligned_cols=94 Identities=18% Similarity=0.056 Sum_probs=68.5
Q ss_pred EEEEccceeeccccccc------cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccc
Q 031299 31 RVVVSPYRICPLGAHID------HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHA 104 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~D------y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 104 (162)
..++||++|||++ |+. ||.-..+.++|+++..+.+++.+++.+++.+. .+ .
T Consensus 7 ~~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~-~~--------~------------- 63 (271)
T PRK00343 7 LDWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTP-IP--------G------------- 63 (271)
T ss_pred EEEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCC-CC--------C-------------
Confidence 3468999999999 531 23333499999999999998876655555421 11 1
Q ss_pred cccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 105 VYASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 105 ~~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
...|.||+..++..+.+. +.. .|+++.|.++||+ ++|||||||
T Consensus 64 -----------~~~~~N~v~~a~~~l~~~~~~~--~~~~i~i~k~IP~-gaGLGssSs 107 (271)
T PRK00343 64 -----------VPEEDNLIVRAARLLQKATGTP--LGADISLDKRLPM-GGGLGGGSS 107 (271)
T ss_pred -----------CCCcccHHHHHHHHHHHHhCCC--CCeEEEEEcCCCC-cCCCCcchH
Confidence 013578888888888765 433 5999999999998 999999986
No 25
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.46 E-value=6.5e-07 Score=73.42 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=64.7
Q ss_pred EEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccc
Q 031299 33 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYA 107 (162)
Q Consensus 33 v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 107 (162)
++||++|||+ |..-| ||.-..+..+|+++-.+.+.+.++ +.+... .. .+
T Consensus 4 ~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~--~~i~~~-~~--------~~--------------- 57 (275)
T PRK14611 4 LLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHHT--LEVKTS-SP--------QI--------------- 57 (275)
T ss_pred eeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECCc--EEEEeC-CC--------CC---------------
Confidence 6899999986 66656 777778888999998888877432 333211 00 01
Q ss_pred ccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 108 SDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 108 ~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
+. +.|++..++..+++. +.. .||++.|.++||+ ++|||||||
T Consensus 58 -------~~--~~n~v~~a~~~~~~~~g~~--~~~~i~i~k~IP~-~~GLGSSsA 100 (275)
T PRK14611 58 -------KE--EENIVYKALRLFERYTGID--INYSIFIEKNIPV-GAGLGGGSS 100 (275)
T ss_pred -------CC--cccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-cCCccHHHH
Confidence 11 456676677777654 443 5999999999998 999999997
No 26
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=98.28 E-value=4.9e-06 Score=72.92 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=44.6
Q ss_pred EEccceeeccccccccC-CceeEEeeeccceEEEEEEcCC--C----eEEEEeCCCC-CeeEEEcC
Q 031299 33 VVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGD--T----EVVLRSGQFD-GEVRFRID 90 (162)
Q Consensus 33 v~APGRv~L~GEH~Dy~-gg~vl~~Ai~~~~~v~~~~~~~--~----~i~i~s~~~~-~~~~~~l~ 90 (162)
++|||++-|.||..+.. |...+-+|++.|+++.+.+... . .++|.|.+|. ....+...
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~ 67 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKIS 67 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCCCCceEEEEe
Confidence 68999999999999995 4467899999999999976432 1 4688998886 33445443
No 27
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.13 E-value=2.2e-05 Score=64.93 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=58.4
Q ss_pred EEEEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
+.+.||++|||+ |---| ||.-..+-..|+++=.+.+++.++..+++... ... .+
T Consensus 7 ~~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~i~~~~~-~~~-------~i------------- 65 (290)
T PRK14608 7 LTEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPAEALSLTVSGP-FAA-------GL------------- 65 (290)
T ss_pred EEEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEECCCCcEEEeCC-Ccc-------CC-------------
Confidence 447899999986 33333 45555555666666555555543323333211 000 00
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 106 YASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
+ ..+.|++.-++..+.+. +... .|+++.|.++||+ ++|||||||
T Consensus 66 ---------p-~~~~Nlv~ka~~~~~~~~g~~~-~~~~i~i~k~IP~-~~GLGsssa 110 (290)
T PRK14608 66 ---------G-DGDDNLVLRAARALRARVGPGL-PPGAFHLEKNLPV-AAGIGGGSA 110 (290)
T ss_pred ---------C-CCCCcHHHHHHHHHHHHhCCCC-CceEEEEEeCCcC-cCCchHHHH
Confidence 1 12356665555666543 3223 5899999999998 999999987
No 28
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.05 E-value=4.4e-05 Score=62.56 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=62.0
Q ss_pred EEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccc
Q 031299 33 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYA 107 (162)
Q Consensus 33 v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 107 (162)
++||++|||+ |-.-| ||.--.+-.+|+++-.+.+.+.++ .+++... .. .++.
T Consensus 5 ~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~-~~~i~~~---~~---~~p~---------------- 61 (276)
T PRK14612 5 RLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS-GLELRVL---GA---DLPT---------------- 61 (276)
T ss_pred EeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC-cEEEEcC---CC---CCCC----------------
Confidence 6899999985 66666 788889999999999988887543 3444311 00 1110
Q ss_pred ccccccccccCHHHHH-HHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 108 SDSAKIKEECKWGNYA-RGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 108 ~~~~~~~~~~~w~~y~-~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
. ..|.+ +++...+.+.+.. .|+++.|.++||+ ++|||||||
T Consensus 62 -------~---~~Nli~ka~~~~~~~~g~~--~~~~I~i~k~IP~-~~GLGssSa 103 (276)
T PRK14612 62 -------D---ERNLVYRAARAYLDAAGQP--GGVRITLEKRLPL-AAGLGGGSS 103 (276)
T ss_pred -------C---CcccHHHHHHHHHHHhCCC--CCeEEEEEecCCC-cCCCchHHH
Confidence 0 01123 3333334444543 5999999999998 999999997
No 29
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.02 E-value=6.3e-05 Score=62.46 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=63.7
Q ss_pred EEEEccceeecc----ccccc-cCCceeEEeeec-cceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccc
Q 031299 31 RVVVSPYRICPL----GAHID-HQGGTVSAMTIN-KGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHA 104 (162)
Q Consensus 31 ~~v~APGRv~L~----GEH~D-y~gg~vl~~Ai~-~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 104 (162)
..+.||++|||+ |-.-| ||.-..+-.+|+ .+-.+.+++.++..+++.... . .++
T Consensus 7 ~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~-~-----~~~-------------- 66 (296)
T PRK14615 7 VTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTI-P-----DLD-------------- 66 (296)
T ss_pred EEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECC-C-----CCC--------------
Confidence 457999999986 66666 777788999998 588888887655445553211 0 010
Q ss_pred cccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 105 VYASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 105 ~~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.. .|.+.-++..+++. +.. .|+++.|..+||+ ++|||||+|
T Consensus 67 ----------~~---~Nlv~~a~~~~~~~~~~~--~~~~i~i~k~IP~-~~GLGsgsa 108 (296)
T PRK14615 67 ----------PE---RNTVTRAYTAFAAATGFR--PPLEVHLRKGIPH-GAGLGGGSA 108 (296)
T ss_pred ----------CC---ccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-CCCccHHHH
Confidence 00 22233334444443 443 5899999999998 999999987
No 30
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.98 E-value=5e-05 Score=62.59 Aligned_cols=93 Identities=20% Similarity=0.101 Sum_probs=59.3
Q ss_pred EEEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccc
Q 031299 32 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVY 106 (162)
Q Consensus 32 ~v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 106 (162)
.+.||+||||+ |.=-| |+.-..+.++|+++..+.+.+.+ .+.+... .+ .+..
T Consensus 5 ~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~--~~~i~~~-~~--------~~p~------------ 61 (287)
T PRK14616 5 SVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSD--TISMSCT-NL--------DLPV------------ 61 (287)
T ss_pred EEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECC--CEEEEeC-CC--------CCCC------------
Confidence 47899999986 44334 67777888999999888887743 2433211 00 1110
Q ss_pred cccccccccccCHHHHHHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 107 ASDSAKIKEECKWGNYARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 107 ~~~~~~~~~~~~w~~y~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
...+.+.-++..+.+ .+.. .|+++.|.++||+ ++|||||||
T Consensus 62 -----------~~~nl~~~a~~~~~~~~~~~--~~~~I~i~k~IP~-~~GLGssSA 103 (287)
T PRK14616 62 -----------DDSNLCIRAAKALQEYAGVS--KGVSITLDKRVPF-GAGLGGGSS 103 (287)
T ss_pred -----------CccHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-cCCchHHHH
Confidence 012233233333333 3432 6999999999998 999999997
No 31
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.95 E-value=5.1e-05 Score=62.22 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 118 KWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 118 ~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.+.|++.-++..+++... . .|+++.+.++||+ ++|||||||
T Consensus 62 ~~~Nlv~~a~~~~~~~~~-~-~~~~i~i~k~IP~-~aGLGssss 102 (269)
T PRK14609 62 PEDNLVVKAYNLLKKDFP-L-PPVHIHLYKHIPI-GAGLGGGSS 102 (269)
T ss_pred ccccHHHHHHHHHHHHcC-C-CCeEEEEecCCCC-CCcccHHHH
Confidence 456777767777665422 3 5899999999998 999999997
No 32
>PRK01123 shikimate kinase; Provisional
Probab=97.95 E-value=4.2e-05 Score=62.91 Aligned_cols=90 Identities=22% Similarity=0.108 Sum_probs=55.4
Q ss_pred ceeecccccccc---CCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccccccc
Q 031299 37 YRICPLGAHIDH---QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKI 113 (162)
Q Consensus 37 GRv~L~GEH~Dy---~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 113 (162)
.|.+..|.-+|+ ..+.--+++||+++++.+++.++. +.+. ..+. .+.
T Consensus 3 ~~~~~~gg~~~~~~~~~~~g~~~~i~l~~~v~v~~~~~~-~~~~-~~~~--------~~~-------------------- 52 (282)
T PRK01123 3 GRATALGAGTIINAIATGKGSAFGIDLKTTATVELSDDG-GGIE-GEIS--------GNP-------------------- 52 (282)
T ss_pred ceEEecchhhhhhhhhcCcccEEEeccEEEEEEEECCCC-ceee-eccc--------CCC--------------------
Confidence 466667777775 222233449999999999886553 2222 1111 111
Q ss_pred ccccCHHHHHHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 114 KEECKWGNYARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 114 ~~~~~w~~y~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
..+ .+++.-++..+.+ .+.. .||++.+.++||+ ++|||||||.
T Consensus 53 --~~~-~~~v~~~~~~~~~~~~~~--~~~~i~i~s~IP~-~~GLGSSaA~ 96 (282)
T PRK01123 53 --DAD-TRLIERCVELVLERFGID--YGATVRTKSEIPL-ASGLKSSSAA 96 (282)
T ss_pred --CCC-chHHHHHHHHHHHHhCCC--CCEEEEEecCCCC-CCCccHHHHH
Confidence 111 1445445555444 3443 5999999999998 9999999983
No 33
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=97.90 E-value=4.7e-05 Score=62.15 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=50.3
Q ss_pred eeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHH
Q 031299 52 TVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQ 131 (162)
Q Consensus 52 ~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~ 131 (162)
.-.+++|++++.+.+++.++..+.+.+. . . .+++..++..+.
T Consensus 15 ~g~a~aI~~~~~v~v~~~~~~~~~~~~~-----------~-----------------------~----~n~i~~~~~~~~ 56 (261)
T TIGR01920 15 LGGAFGIDLWVEAKVREGDEAGVSTYVR-----------G-----------------------N----PRLIERILTAIR 56 (261)
T ss_pred cceEEEccCceEEEEEECCCCceeeeec-----------C-----------------------C----hHHHHHHHHHHH
Confidence 5567888999999998876654433221 0 0 155666777766
Q ss_pred Hc-CCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 132 SR-GNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 132 ~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
+. +.+ .||++.+.++||+ ++|||||||+
T Consensus 57 ~~~~~~--~g~~i~i~s~iP~-~~GLGSSaA~ 85 (261)
T TIGR01920 57 SKFGIV--DGLEVEVESEIPA-GSGLKSSSAL 85 (261)
T ss_pred HhcCCC--CCEEEEEecCCCC-CCCcchHHHH
Confidence 54 432 6999999999998 9999999984
No 34
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.77 E-value=0.00024 Score=58.60 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=58.8
Q ss_pred EEEEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCC-CeEEEEeCCCCCeeEEEcCCCCCCccccccccc
Q 031299 31 RVVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGD-TEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHA 104 (162)
Q Consensus 31 ~~v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~-~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 104 (162)
+.+.||++|||+ |-.-| ||.-..+-++++++=.+.+++.++ ..+.+... . .+
T Consensus 4 ~~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~-~---------~~------------ 61 (283)
T PRK14610 4 FLVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSKNRGVEFVNS-L---------KI------------ 61 (283)
T ss_pred eEEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEECCCCCeEEEeCC-C---------CC------------
Confidence 457899999986 44444 555556667777776666665443 12333210 0 00
Q ss_pred cccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 105 VYASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 105 ~~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.. . .|++.-++..+.+. +.. .|+++.|..+||+ ++|||||||
T Consensus 62 ----------~~-~-~Nlv~kA~~~l~~~~~~~--~g~~i~i~K~IP~-~aGLGggSs 104 (283)
T PRK14610 62 ----------NR-Y-NNTVQRAIGLLLRHSPVR--TNVYVKVIKNIPV-SAGLAGGSA 104 (283)
T ss_pred ----------CC-C-CcHHHHHHHHHHHHhCCC--CCeEEEEEcCCCC-CCcCCccHH
Confidence 00 1 34454555555443 433 5999999999998 999999986
No 35
>PLN02451 homoserine kinase
Probab=97.70 E-value=8.7e-05 Score=63.57 Aligned_cols=96 Identities=20% Similarity=0.155 Sum_probs=55.4
Q ss_pred EEEEcccee-eccccccccCCceeEEeeec-cceEEEEEEcCC---CeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRI-CPLGAHIDHQGGTVSAMTIN-KGILLGFVPSGD---TEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv-~L~GEH~Dy~gg~vl~~Ai~-~~~~v~~~~~~~---~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
+.++||+++ || |= |.-++.+|+| ++-.+.+++.++ +.+.|.... . . ...+...
T Consensus 54 ~~~~aPA~~ANL-Gp-----gfD~lG~a~d~l~d~v~~~~~~~~~~~~~~i~~~~-g-~----~~~l~~~---------- 111 (370)
T PLN02451 54 VKAFAPATVANL-GP-----GFDFLGCAVDGLGDFVTARVDPGVRPGEVSISEIT-G-D----TGRLSKD---------- 111 (370)
T ss_pred EEEEeccchhhc-cc-----ChhhhhhhhccCcCEEEEEECCCCCcccEEEEEec-c-c----cccCCCC----------
Confidence 558999999 86 22 2334555666 777777776543 235554211 0 0 0111100
Q ss_pred ccccccccccccCHHHHH-HHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 106 YASDSAKIKEECKWGNYA-RGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~-~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
++ .|.+ +++...+.+.|... .|+++.|.++||+ ++|||||||.
T Consensus 112 ---------~~---~Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~-g~GLGSSaA~ 155 (370)
T PLN02451 112 ---------PL---RNCAGIAAIATMKLLGIRS-VGLSLSLHKGLPL-GSGLGSSAAS 155 (370)
T ss_pred ---------cc---cCcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCC-CCCccHHHHH
Confidence 00 1222 33333444456544 5999999999998 9999999973
No 36
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.70 E-value=0.00014 Score=60.18 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=57.5
Q ss_pred EEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccc
Q 031299 33 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYA 107 (162)
Q Consensus 33 v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 107 (162)
..||++|||+ |..-| ||.-..+-++|+++-.+.+.+.+...+.+. ..+. ..+..
T Consensus 3 ~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~~i~~~--~~~~------~~~~~------------- 61 (300)
T PRK03188 3 VRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADVLSVEVS--GEGA------DQVPT------------- 61 (300)
T ss_pred EeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCCcEEEEe--cCCc------cCCCC-------------
Confidence 4799999986 43332 455556888899998888887543223221 1110 01100
Q ss_pred ccccccccccCHHHHHHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 108 SDSAKIKEECKWGNYARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 108 ~~~~~~~~~~~w~~y~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.+ .+.+.-++..+.+ .+.. .|+++.|.++||+ ++|||||||
T Consensus 62 -------~~---~nl~~~~~~~~~~~~~~~--~~~~I~i~s~IP~-~~GLGSSSA 103 (300)
T PRK03188 62 -------DE---SNLAWRAAELLAEHVGRA--PDVHLHIDKGIPV-AGGMAGGSA 103 (300)
T ss_pred -------CC---ccHHHHHHHHHHHHhCCC--CCeEEEEEcCCcc-cCcchHHHH
Confidence 00 1222333344433 3432 6999999999998 999999997
No 37
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.61 E-value=0.00053 Score=56.99 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 121 NYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 121 ~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
|.+.-++..+++. +.. .|+++.|..+||+ ++|||||||
T Consensus 62 Nlv~ra~~~l~~~~g~~--~~v~I~i~K~IP~-gaGLGggSS 100 (288)
T PRK00650 62 NSIWKSVALFRRYTGIT--TPVSWRVVKQIPI-GAGLAGGSS 100 (288)
T ss_pred cHHHHHHHHHHHHhCCC--CCeEEEEeeCCCC-cCCcCcchh
Confidence 4444445555543 543 5899999999998 999999987
No 38
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.58 E-value=0.00068 Score=56.35 Aligned_cols=105 Identities=15% Similarity=0.031 Sum_probs=57.9
Q ss_pred Eccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCee-EEEcCCCCCCcccccccccccc
Q 031299 34 VSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEV-RFRIDEIQQPTNSVKKHHAVYA 107 (162)
Q Consensus 34 ~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~ 107 (162)
.||++|||+ |.--| ||.-..+-..|+++=.+.+.+.++..+.+...+..... ..-...+...
T Consensus 2 ~apAKINL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 69 (297)
T PRK14613 2 ISPAKINLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPAPNGVFELFSTNEIILEKRKLYDQVSER------------ 69 (297)
T ss_pred CCCceEeeeecCCCcCCCCcceeeeEEEEeccCCEEEEEECCCCcEEEEecccccccccccccccCCC------------
Confidence 589999986 55555 56666677777777666666544333444422110000 0000001000
Q ss_pred ccccccccccCHHHHHHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 108 SDSAKIKEECKWGNYARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 108 ~~~~~~~~~~~w~~y~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.. .-.|.+.-++..+.+ .+.. .|+++.|..+||+ ++|||||||
T Consensus 70 -------~~-~~~Nlv~ka~~~~~~~~~~~--~~v~I~i~K~IP~-~aGLGggSs 113 (297)
T PRK14613 70 -------GD-IKQNILYKTFIKARSLFPEL--PGVKIHLTKRISP-AGGLGGGST 113 (297)
T ss_pred -------CC-cccchHHHHHHHHHHHhCCC--CCeEEEEEeCCCc-cCCccccHH
Confidence 00 013444334444443 3433 5899999999998 999999987
No 39
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=97.56 E-value=0.00054 Score=57.65 Aligned_cols=95 Identities=23% Similarity=0.190 Sum_probs=56.9
Q ss_pred EEccceee-----ccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccc
Q 031299 33 VVSPYRIC-----PLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYA 107 (162)
Q Consensus 33 v~APGRv~-----L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 107 (162)
|++|.|+- +-|.|-=.+||.-++.- +.++++.+++.++..+++.+. ... .+.
T Consensus 3 v~~~~rlH~g~~d~~~~~gr~~Gg~G~al~-~~~~~v~v~~~~~~~v~~~~~--~g~------~l~-------------- 59 (324)
T TIGR00144 3 INTPSRIHLTLIDLNGSIGRVDGGVGLALE-EPEIVIGLKESDDMGVEFTSH--AEG------KLG-------------- 59 (324)
T ss_pred ecccccccccccCCCCccCccccceEEEEe-CCcEEEEEEECCCceEEeccc--ccc------ccc--------------
Confidence 78999985 34555556777555444 347788888876655554322 111 111
Q ss_pred ccccccccccCHHHHHHHHHHHH-HHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 108 SDSAKIKEECKWGNYARGALYAL-QSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 108 ~~~~~~~~~~~w~~y~~gvl~~l-~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
...-.+.+..++..+ ...|. .|+++.|.++||+ ++|||||||.
T Consensus 60 --------~~~~~n~~~~~~~~~~~~~g~---~~~~i~i~~~IP~-~~GLGSsaa~ 103 (324)
T TIGR00144 60 --------EEYRRSRIMEAARKTLKHIGS---EGFHFTVRSMFPA-HSGLGSGTQL 103 (324)
T ss_pred --------chhHHHHHHHHHHHHHHHhCC---CCEEEEEeecCCC-ccCccHHHHH
Confidence 011122333333333 33342 4999999999998 9999999973
No 40
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.55 E-value=0.00087 Score=55.11 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=55.0
Q ss_pred EEEccceeecc----ccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccc
Q 031299 32 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVY 106 (162)
Q Consensus 32 ~v~APGRv~L~----GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 106 (162)
.++||++|||+ |..-| ||.-..+-..|+++-.+.+.+.+...+++.. +. ..+..
T Consensus 5 ~~~apaKiNl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~~~~~~~i~~---~~------~~~p~------------ 63 (280)
T PRK14614 5 TLKAPAKVNYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALSDGPGIRVTC---GR------EGVPD------------ 63 (280)
T ss_pred EEeecceEEeeeccCCCCCCCcChhheEeEECCCCeEEEEEECCCCCEEEEe---CC------CCCCC------------
Confidence 36899999975 44433 3344456667777777777664432344321 10 01100
Q ss_pred cccccccccccCHHHHH-HHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 107 ASDSAKIKEECKWGNYA-RGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 107 ~~~~~~~~~~~~w~~y~-~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.+ .|.+ +++...+...+.. .|+++.|.++||+ ++|||||||
T Consensus 64 --------~~---~nl~~~a~~~~~~~~~~~--~~~~i~i~~~IP~-~~GLGsssa 105 (280)
T PRK14614 64 --------GP---GNIAWRAADALLDLSGRE--VGIDISITKNIPV-AAGLGGGSS 105 (280)
T ss_pred --------CC---CcHHHHHHHHHHHHhCCC--CceEEEEEecCCC-cCccHHHHH
Confidence 00 1223 3333333333543 5899999999998 999999997
No 41
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.35 E-value=0.0011 Score=54.15 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=20.4
Q ss_pred CcEEEEEEcccCCCCCCcccccC
Q 031299 139 EGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 139 ~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.|+++.|..+||+ ++|||||||
T Consensus 85 ~gv~I~i~K~IP~-gaGLGggSS 106 (257)
T PRK04181 85 KKKAIEVEKNIPT-GAGLGGGSS 106 (257)
T ss_pred CceEEEEEeCCCC-cCcccccHH
Confidence 4899999999998 999999986
No 42
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.34 E-value=0.00096 Score=54.69 Aligned_cols=86 Identities=16% Similarity=0.053 Sum_probs=60.3
Q ss_pred EEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccccc
Q 031299 33 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAK 112 (162)
Q Consensus 33 v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 112 (162)
++|+|-++++---.+..|+ +++||+.+.+.++..++. .+.-...
T Consensus 5 a~A~g~~TIiNAiatG~G~---AfgidL~v~a~v~~~~~~--~~~~~~~------------------------------- 48 (278)
T COG1685 5 ARAYGGGTIINAIATGKGS---AFGIDLKVEAEVRLSDEG--KVRGEPE------------------------------- 48 (278)
T ss_pred EEecCceeEeeehhcCccc---eeeecceEEEEEEEcCcc--ccccCCC-------------------------------
Confidence 6888988888888887776 589999999888876522 1211000
Q ss_pred cccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 113 IKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 113 ~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
.-...+.-++..+++. |.. .|+++.++|+||. ++||.||+|+
T Consensus 49 -----~d~~li~~~~~~v~e~~g~~--~~~~v~v~SeiP~-~~GLkSSSA~ 91 (278)
T COG1685 49 -----GDTRLIERCVERVREKYGIP--LGVEVEVESEIPV-GSGLKSSSAA 91 (278)
T ss_pred -----CChHHHHHHHHHHHHHcCCC--cceEEEEecCCCc-ccCcchhHHH
Confidence 0022244566666654 544 5899999999998 9999999974
No 43
>PRK05905 hypothetical protein; Provisional
Probab=97.21 E-value=0.005 Score=50.43 Aligned_cols=33 Identities=21% Similarity=0.065 Sum_probs=24.9
Q ss_pred HHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 126 ALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 126 vl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
++..|++ .+.. .|+++.+..+||+ ++||||++|
T Consensus 73 a~~~l~~~~~~~--~~~~i~l~K~IP~-~aGLGggSS 106 (258)
T PRK05905 73 TLEWLRDKYNIK--NHFKIKIKKRIPI-GSGLGSGSS 106 (258)
T ss_pred HHHHHHHHhCCC--CCeEEEEEeCCCC-cCCCCCCch
Confidence 3344443 3533 5899999999998 999999986
No 44
>PTZ00299 homoserine kinase; Provisional
Probab=97.21 E-value=0.001 Score=56.34 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=55.9
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
+.+++|+..-=+|=.- -+|.+|++++.++.+.+.+...+++.. .... .+...
T Consensus 8 ~~v~vPATsANlGpGF-----DsLGlAL~lyd~v~v~~~~~~~i~i~G-~~~~-------~lp~~--------------- 59 (336)
T PTZ00299 8 VVLRVPATTANIGPAY-----DTLGMALSIFMELTVEHADAFSMTVEG-EGSE-------HISTD--------------- 59 (336)
T ss_pred EEEEEecccccccccH-----HHHhhhcccCcEEEEEECCCCEEEEec-CCcC-------CCCCC---------------
Confidence 4578888776555433 357788999999888875543344421 1100 11100
Q ss_pred cccccccCHHHHH-HHHHHHHHHcCC-CCCCcEEEEEEcccCCCCCCcccccC
Q 031299 111 AKIKEECKWGNYA-RGALYALQSRGN-ILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 111 ~~~~~~~~w~~y~-~gvl~~l~~~g~-~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
. .+.+ +.+...+.+.+. .. .|+++.|.++||+ ++|||||||
T Consensus 60 -----~---~nlv~~a~~~~~~~~~~~~~-~g~~i~i~k~IP~-~~GLGSSsA 102 (336)
T PTZ00299 60 -----E---DNMVVQACRLAFEEYAHKSM-PPLKFIMHSNIPY-GCGCGSSSA 102 (336)
T ss_pred -----c---chHHHHHHHHHHHHhcCCCC-CceEEEEecCCCc-cCCccHHHH
Confidence 0 1222 333333444443 23 4899999999998 999999987
No 45
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=97.16 E-value=0.0014 Score=54.31 Aligned_cols=37 Identities=22% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 123 ARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 123 ~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
+..++..+.+ .+.+. .|+++.|.++||+ ++|||||||
T Consensus 63 v~~a~~~~~~~~g~~~-~g~~i~i~~~IP~-~~GLGSSsa 100 (302)
T TIGR00191 63 IYQVAKRFLDQLGIRM-PPVKVTLEKNIPL-GRGLGSSAA 100 (302)
T ss_pred HHHHHHHHHHHcCCCC-CCEEEEEEcCCCC-cCCCChHHH
Confidence 3334444433 45543 5999999999998 999999997
No 46
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0015 Score=54.49 Aligned_cols=94 Identities=24% Similarity=0.119 Sum_probs=59.4
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
+.+++|+..-=+|=. .-+|.+|++++-.+.+....+ ..+|...... . +.+..
T Consensus 4 ~~v~aPASSANlGpG-----FD~lGlAl~~~~~~~v~~~~~-~~~i~~~g~~-~-----~~iP~---------------- 55 (299)
T COG0083 4 MKVRVPASSANLGPG-----FDVLGLALDLYNDVVVVEVVD-KFEIEVEGEG-A-----DKIPL---------------- 55 (299)
T ss_pred EEEEEeecccccCCC-----ccceeeeccccCcEEEEEecC-cEEEEEeccc-c-----cCCCC----------------
Confidence 447788877666644 446889999988777777654 4454322110 0 11111
Q ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 111 AKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.++. -..+.+...+++.|.+. ++.+.+..+||+ +.|||||||
T Consensus 56 ---~~~n---~~~~~~~~~~~~~~~~~--~~~i~i~k~IP~-~rGLGSSaA 97 (299)
T COG0083 56 ---DPEN---LVYQAALKFLEALGIEA--GVKIRIEKGIPL-GRGLGSSAA 97 (299)
T ss_pred ---Ccce---eHHHHHHHHHHHhCCCc--cEEEEEEcCCCC-CCCCcHHHH
Confidence 0111 12345566666667664 599999999998 999999997
No 47
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.0052 Score=54.85 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.3
Q ss_pred EEEEccceeecccccccc-------CCceeEEeeecc
Q 031299 31 RVVVSPYRICPLGAHIDH-------QGGTVSAMTINK 60 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy-------~gg~vl~~Ai~~ 60 (162)
.++.||.||.++|.-.|- .++.|+.+||.+
T Consensus 572 Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAikl 608 (948)
T KOG4644|consen 572 VIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKL 608 (948)
T ss_pred EEEecceeeeecccccCCCCeeEeccccceeeeEEEe
Confidence 679999999999999885 558888888754
No 48
>PRK01212 homoserine kinase; Provisional
Probab=96.52 E-value=0.0075 Score=49.73 Aligned_cols=93 Identities=20% Similarity=0.087 Sum_probs=53.3
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCC-C-e--EEEEeCCCCCeeEEEcCCCCCCccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-T-E--VVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVY 106 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~-~-~--i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 106 (162)
+.+++|+|.-=+|- |.-+|.++|+.+-.+.+.+.++ . . +.+... .. ..+...
T Consensus 4 ~~v~~pat~anlg~-----gfd~lG~al~~~d~l~~~~~~~~~~~~~~~~~~~-~~-------~~~p~~----------- 59 (301)
T PRK01212 4 VKVRVPATSANLGP-----GFDSLGLALSLYDEVLVGDVVSVEAEFSIEVIGE-GA-------DKLPLD----------- 59 (301)
T ss_pred EEEEEecchhhccc-----ChhhhhccccCccEEEEEEccCCCCceEEEEEec-CC-------CcCCCC-----------
Confidence 45789999543333 3335667888888888876543 1 2 332211 10 011100
Q ss_pred cccccccccccCHHHHHHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 107 ASDSAKIKEECKWGNYARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 107 ~~~~~~~~~~~~w~~y~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
++ .|.+.-++..+.+ .+.. .|+++.|.++||. ++|||||+|
T Consensus 60 --------~~---~Nli~~a~~~~~~~~~~~--~~~~I~i~k~IP~-~~GLGssSa 101 (301)
T PRK01212 60 --------PE---KNLVYQAALKFLEKLGKP--PGLRIELEKNIPL-GRGLGSSAA 101 (301)
T ss_pred --------Cc---cccHHHHHHHHHHHcCCC--CCeEEEEEeCCCC-CCCCcHHHH
Confidence 00 1223233344433 3543 5899999999998 999999987
No 49
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=96.01 E-value=0.0085 Score=50.14 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 120 GNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 120 ~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.+.++.++..+++..... .++++.+.+++|. ++|||||||
T Consensus 66 ~~~v~~~l~~~~~~~~~~-~~v~I~~~n~iP~-~aGLgSSAA 105 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKEQ-EKLHIVSQNNFPT-AAGLASSAS 105 (305)
T ss_pred hHHHHHHHHHHHHhcCCC-CceEEEEecCCCC-CCccchHHH
Confidence 445777888887753222 5899999999998 999999997
No 50
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=95.48 E-value=0.19 Score=41.88 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccc
Q 031299 121 NYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSS 159 (162)
Q Consensus 121 ~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSS 159 (162)
|.+.-....|++. +. . .|+++.|+-+||+ ++||+.=
T Consensus 67 NLv~rAa~ll~~~~~~-~-~~v~I~l~K~IPv-~aGLGGG 103 (289)
T COG1947 67 NLVYRAAELLRKRTGI-A-GGVSIHLDKNIPV-GAGLGGG 103 (289)
T ss_pred hHHHHHHHHHHHHhCC-C-CCeeEEEEecCcc-cCcCccc
Confidence 5554455556554 52 2 6899999999998 9999753
No 51
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=91.72 E-value=0.14 Score=42.52 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=22.4
Q ss_pred EEccceeeccccccccCCc-eeEEeeeccceE
Q 031299 33 VVSPYRICPLGAHIDHQGG-TVSAMTINKGIL 63 (162)
Q Consensus 33 v~APGRv~L~GEH~Dy~gg-~vl~~Ai~~~~~ 63 (162)
.+|||++-|+|+.+..-+| .+.+.|++++..
T Consensus 6 fSaPGk~LlaGdYs~lv~glsahaia~nkr~~ 37 (337)
T COG3890 6 FSAPGKLLLAGDYSILVEGLSAHAIAINKRAF 37 (337)
T ss_pred ecCCCceEEeccceeeeecceeeEEEeccccc
Confidence 5899999999975544433 347788877654
No 52
>PLN02407 diphosphomevalonate decarboxylase
Probab=89.97 E-value=0.26 Score=42.00 Aligned_cols=19 Identities=37% Similarity=0.256 Sum_probs=16.7
Q ss_pred EEEEEc--ccCCCCCCcccccC
Q 031299 142 IGYICG--SDNLDSSGLSSSAA 161 (162)
Q Consensus 142 ~i~i~s--~iP~~gsGLsSSAA 161 (162)
++.|.| ++|. ++||+||||
T Consensus 105 ~~~I~S~N~~Pt-aaGLaSSAs 125 (343)
T PLN02407 105 HVHIASYNNFPT-AAGLASSAA 125 (343)
T ss_pred cEEEEeccCCcc-ccchHHHHH
Confidence 577777 9997 999999997
No 53
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=88.57 E-value=0.8 Score=39.18 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=36.6
Q ss_pred EEEccceeeccccccccCCce-eEEeeeccceEEEEEEcCC------CeEEEEeCCCCC
Q 031299 32 VVVSPYRICPLGAHIDHQGGT-VSAMTINKGILLGFVPSGD------TEVVLRSGQFDG 83 (162)
Q Consensus 32 ~v~APGRv~L~GEH~Dy~gg~-vl~~Ai~~~~~v~~~~~~~------~~i~i~s~~~~~ 83 (162)
+.+|||++-+-|...+..-.+ .+...++-+.|+.+.+-++ ..+|+.|.+|.+
T Consensus 4 ~~SAPGKvL~aGGYlVLd~~y~glV~gl~Ar~yAi~~p~~~~~g~~~~~VrvkSpQf~d 62 (459)
T KOG4519|consen 4 VASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGPEWTDVRVKSPQFSD 62 (459)
T ss_pred eecCCCceEEecceEEecCCcceeEEeeeceeEEEeeccccccCCccceeEecCccccc
Confidence 489999999999998873222 2445667777777776432 248888888863
No 54
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=88.45 E-value=0.6 Score=39.60 Aligned_cols=39 Identities=26% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 120 GNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 120 ~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
...++-+++.+++. |.. .++.+...++.|- ++||+||||
T Consensus 71 ~~k~~~~ld~~R~~~~~~--~~~~i~s~n~~pt-aaGLaSSaa 110 (329)
T COG3407 71 NEKARRVLDRFRKEYGIS--FKVKIVSYNNFPT-AAGLASSAA 110 (329)
T ss_pred HHHHHHHHHHHHHhhccc--ceEEEEEecCCCc-cccccccHH
Confidence 56688899999864 432 5788889999997 999999997
No 55
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.90 E-value=0.76 Score=37.83 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.4
Q ss_pred CcEEEEEEcccCCCCCCcccccC
Q 031299 139 EGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 139 ~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.|.++.+.|+||. |.||.||.|
T Consensus 82 ~~i~l~lqSsIPv-gKG~ASSTA 103 (293)
T COG4542 82 TGIDLLLQSSIPV-GKGMASSTA 103 (293)
T ss_pred CCeeEEEeccccc-cccccccHH
Confidence 6899999999997 999999986
No 56
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=83.02 E-value=6.8 Score=32.54 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=52.4
Q ss_pred EEEccceeec-----cccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccc
Q 031299 32 VVVSPYRICP-----LGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVY 106 (162)
Q Consensus 32 ~v~APGRv~L-----~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 106 (162)
..++|+-|+= +|.---+.|..-...+++.++.+.++......+++ +++ ++++.
T Consensus 4 ~~fvP~hITgfF~pv~~~~p~~SGSiGaGv~l~~gv~v~v~~~~~~~v~~-----Ng~-~~d~~---------------- 61 (283)
T COG1829 4 RLFVPGHITGFFVPVIGKDPLKSGSIGAGVALERGVTVEVRFGEGTGVRL-----NGK-KIDLP---------------- 61 (283)
T ss_pred eEeccceeEEEEEeccCCCCccCCCcceeEEecCceeEEEEecCCceEEE-----CCe-eccch----------------
Confidence 3567777652 22222356777788888888888888766533332 211 11111
Q ss_pred cccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 107 ASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 107 ~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
-.+.+++.|.. .|+.+.+.+++|+ |+|++-|+|
T Consensus 62 ---------------~~~~v~e~L~~------~~~~v~~~~~~P~-G~G~G~Sga 94 (283)
T COG1829 62 ---------------ITRKVIEKLGP------DGVGVRIESPVPL-GCGYGVSGA 94 (283)
T ss_pred ---------------hHHHHHHHhCc------cCcceEEEecCCC-CcccchhHH
Confidence 02345555433 3467889999999 999999986
No 57
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=57.90 E-value=77 Score=24.16 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCCC-ChHHHHHHHHHHHHHhCC---CCcceEE-EEccceeecccccccc----CCceeEEeeeccceEEEEE
Q 031299 4 FSWP-TEDELKEMRNKVSEMSGR---DAEEVRV-VVSPYRICPLGAHIDH----QGGTVSAMTINKGILLGFV 67 (162)
Q Consensus 4 ~~~~-~~~~~~~~~~~f~~~fg~---~p~~~~~-v~APGRv~L~GEH~Dy----~gg~vl~~Ai~~~~~v~~~ 67 (162)
..|| =++.+.+|++..++..|. .|+.+++ ...|| .=||-|.|- .+-+++.+++..-....++
T Consensus 67 ~~~p~~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~ 137 (169)
T TIGR00568 67 KPWPAMPQDLGDLCERVATAAGFPDFQPDACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIG 137 (169)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCCCEEEEEeecCC--CccccccccccccCCCCEEEEeCCCCEEEEec
Confidence 4566 456777787777776665 6664433 56899 789999995 2234555555554444444
No 58
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=54.68 E-value=10 Score=32.34 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=17.8
Q ss_pred cEEEEEEcccCCCCCCcccccC
Q 031299 140 GIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 140 G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.+++.-.++.|- .+||.||||
T Consensus 105 ~lHI~S~nNFPt-AAGLASSAA 125 (395)
T KOG2833|consen 105 KLHIASVNNFPT-AAGLASSAA 125 (395)
T ss_pred eEEEEecCCCcc-hhhhhhhhh
Confidence 567777788997 999999997
No 59
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.79 E-value=20 Score=27.89 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=25.8
Q ss_pred ccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC
Q 031299 47 DHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG 83 (162)
Q Consensus 47 Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~ 83 (162)
-||||.|++|+-...+.++.-.|-..+-...+.+|.+
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~k 41 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQK 41 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccchh
Confidence 5899999999998888877776643333333456653
No 60
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=45.92 E-value=33 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCcceEEEEccceee
Q 031299 10 DELKEMRNKVSEMSGRDAEEVRVVVSPYRIC 40 (162)
Q Consensus 10 ~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~ 40 (162)
..+++++++|.+.|+.+ .|+.+..|..+.
T Consensus 75 ~~i~~Ir~~Yk~rF~Qe--SV~~~~~p~cvs 103 (104)
T PF12098_consen 75 ARIEAIREAYKQRFQQE--SVMRVDQPVCVS 103 (104)
T ss_pred HHHHHHHHHHHHHhccc--eEEEEccceeec
Confidence 55788999999999987 457788887765
No 61
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=42.11 E-value=1.8e+02 Score=23.21 Aligned_cols=62 Identities=13% Similarity=0.320 Sum_probs=41.3
Q ss_pred CCCCC-hHHHHHHHHHHHHHhCC---CCcceEE-EEccceeeccccccccC----CceeEEeeeccceEEEEE
Q 031299 4 FSWPT-EDELKEMRNKVSEMSGR---DAEEVRV-VVSPYRICPLGAHIDHQ----GGTVSAMTINKGILLGFV 67 (162)
Q Consensus 4 ~~~~~-~~~~~~~~~~f~~~fg~---~p~~~~~-v~APGRv~L~GEH~Dy~----gg~vl~~Ai~~~~~v~~~ 67 (162)
-+||+ ++.+.+|++.....-|. .|+.+++ ...||. =+|-|.|-. +-+++.+++..-....++
T Consensus 88 ~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~--~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~ 158 (213)
T PRK15401 88 KPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGA--KLSLHQDKDERDFRAPIVSVSLGLPAVFQFG 158 (213)
T ss_pred CCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC--ccccccCCCcccCCCCEEEEeCCCCeEEEec
Confidence 46886 46778888888766554 6664332 567996 899999963 446666666665555554
No 62
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.91 E-value=26 Score=30.50 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=35.8
Q ss_pred EEEEccceeeccccc----------cccCCceeEEeeeccceEEEEEEcC
Q 031299 31 RVVVSPYRICPLGAH----------IDHQGGTVSAMTINKGILLGFVPSG 70 (162)
Q Consensus 31 ~~v~APGRv~L~GEH----------~Dy~gg~vl~~Ai~~~~~v~~~~~~ 70 (162)
.++.-+|||.-+|.+ +|..|+.|+|.-||-+|++.+..+.
T Consensus 30 ~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~~~~ 79 (406)
T COG1228 30 AVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSR 79 (406)
T ss_pred eEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeeccccccccCCc
Confidence 678899999999988 7889999999999999999987543
No 63
>PF14982 UPF0731: UPF0731 family
Probab=32.62 E-value=21 Score=23.57 Aligned_cols=15 Identities=60% Similarity=0.503 Sum_probs=11.4
Q ss_pred EcccCCCCCCcccccC
Q 031299 146 CGSDNLDSSGLSSSAA 161 (162)
Q Consensus 146 ~s~iP~~gsGLsSSAA 161 (162)
+|.|-. ..||+||||
T Consensus 17 DS~i~~-e~GLsssaa 31 (79)
T PF14982_consen 17 DSSIGL-EPGLSSSAA 31 (79)
T ss_pred cccccc-Ccccccchh
Confidence 345666 789999987
No 64
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=31.56 E-value=54 Score=21.27 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHHhCCCCcceEEEEccce
Q 031299 7 PTEDELKEMRNKVSEMSGRDAEEVRVVVSPYR 38 (162)
Q Consensus 7 ~~~~~~~~~~~~f~~~fg~~p~~~~~v~APGR 38 (162)
++.+.+.++++...+.+|..|+...++.+ ||
T Consensus 19 ~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk 49 (73)
T cd01791 19 NPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YT 49 (73)
T ss_pred CCCCcHHHHHHHHHHHhCCChHHEEEEeC-Cc
Confidence 35577888999999999988876544444 54
No 65
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=28.82 E-value=51 Score=24.73 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCCcceEEEEccceeeccccccc
Q 031299 13 KEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHID 47 (162)
Q Consensus 13 ~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~D 47 (162)
-|++..-.+.+|.+|..+ ++.++|||.|
T Consensus 6 ~R~~~~la~~l~v~~~~v-------~~~ViGeHg~ 33 (174)
T PF02866_consen 6 ARFRYFLAEKLGVNPSSV-------NAYVIGEHGD 33 (174)
T ss_dssp HHHHHHHHHHHTSGGGGE-------EEEEEBSSST
T ss_pred HHHHHHHHHHHCcCccce-------EEEEEecCCc
Confidence 346666678899988733 6789999977
No 66
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=24.96 E-value=72 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhCCCCcceEEEEccce
Q 031299 10 DELKEMRNKVSEMSGRDAEEVRVVVSPYR 38 (162)
Q Consensus 10 ~~~~~~~~~f~~~fg~~p~~~~~v~APGR 38 (162)
..+.++-+.|++.||.. +++++-||
T Consensus 97 ~~L~~lN~~Y~~kFGf~----Fvi~~~g~ 121 (159)
T PF09349_consen 97 AELAALNQAYEEKFGFP----FVICARGR 121 (159)
T ss_dssp HHHHHHHHHHHHHHSS---------GTT-
T ss_pred HHHHHHHHHHHHHcCCc----eEeecCCC
Confidence 34577889999999863 77888886
No 67
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=24.60 E-value=1.1e+02 Score=25.84 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCcce
Q 031299 4 FSWPTEDELKEMRNKVSEMSGRDAEEV 30 (162)
Q Consensus 4 ~~~~~~~~~~~~~~~f~~~fg~~p~~~ 30 (162)
.+||++...+=+++.|+|.||.++.++
T Consensus 153 ~~~ad~EiR~YIre~F~e~YG~Ds~di 179 (310)
T PF10319_consen 153 CMYADDEIRDYIRESFREVYGVDSMDI 179 (310)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCCCcC
Confidence 367777777889999999999988755
No 68
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=24.33 E-value=37 Score=22.93 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=6.9
Q ss_pred ccCCCCCCccc
Q 031299 148 SDNLDSSGLSS 158 (162)
Q Consensus 148 ~iP~~gsGLsS 158 (162)
++|| |+||.|
T Consensus 61 ~LPP-GGGl~s 70 (81)
T PF07830_consen 61 GLPP-GGGLAS 70 (81)
T ss_dssp S--T-TTTCGG
T ss_pred CCcC-CcCHHH
Confidence 5799 999987
No 69
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=22.74 E-value=1.5e+02 Score=22.19 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCcceEEEEccceeec
Q 031299 10 DELKEMRNKVSEMSGRDAEEVRVVVSPYRICP 41 (162)
Q Consensus 10 ~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L 41 (162)
..++-+.+.|.+ |+.+.+.+.+.+.||...|
T Consensus 34 ~LvkGAiEtm~~-~~V~eenI~ie~VPGS~El 64 (158)
T KOG3243|consen 34 LLVKGAIETMKK-YSVREENIEIEWVPGSFEL 64 (158)
T ss_pred HHHHHHHHHHHH-hCcchhceeEEEcCCceec
Confidence 345667888877 8988888888999999986
No 70
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=22.54 E-value=57 Score=20.36 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=16.1
Q ss_pred cccCCceeEEeeeccceEEE
Q 031299 46 IDHQGGTVSAMTINKGILLG 65 (162)
Q Consensus 46 ~Dy~gg~vl~~Ai~~~~~v~ 65 (162)
+|..|..++|.-||.++++.
T Consensus 25 iD~~g~~v~PG~ID~H~H~~ 44 (68)
T PF13594_consen 25 IDAKGKYVMPGFIDMHTHLG 44 (68)
T ss_dssp EEETTCEEEE-EEEEEE-TT
T ss_pred EECCCCEEeCCeEeeeeccc
Confidence 69999999999999988755
No 71
>smart00335 ANX Annexin repeats.
Probab=22.40 E-value=1.1e+02 Score=17.84 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHHHhCCCCc
Q 031299 8 TEDELKEMRNKVSEMSGRDAE 28 (162)
Q Consensus 8 ~~~~~~~~~~~f~~~fg~~p~ 28 (162)
+...+.++++.|.+.||.+.+
T Consensus 15 s~~~~~~i~~~Y~~~~~~~L~ 35 (53)
T smart00335 15 SNAQLQAIKQAYKKRYGKDLE 35 (53)
T ss_pred CHHHHHHHHHHHHHHhCccHH
Confidence 345677889999999998754
Done!