Query 031299
Match_columns 162
No_of_seqs 104 out of 1039
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 19:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 6.5E-29 2.2E-33 217.7 14.7 134 6-160 14-165 (520)
2 1pie_A Galactokinase; galactos 99.9 4.4E-25 1.5E-29 188.1 15.4 132 10-162 29-162 (419)
3 1wuu_A Galactokinase; galactos 99.9 1E-24 3.6E-29 184.6 14.7 131 10-162 18-152 (399)
4 3k85_A D-glycero-D-manno-hepto 99.9 8.7E-25 3E-29 183.3 11.8 109 31-162 4-119 (357)
5 2a2c_A N-acetylgalactosamine k 99.9 2.4E-24 8.1E-29 186.9 14.7 130 11-162 38-170 (478)
6 3k17_A LIN0012 protein; protei 99.9 2.6E-22 9E-27 168.8 10.8 110 30-162 6-123 (365)
7 1kvk_A MK, mevalonate kinase; 99.9 1E-22 3.4E-27 172.1 7.0 130 31-162 6-149 (395)
8 2cz9_A Probable galactokinase; 99.8 8E-21 2.7E-25 157.0 7.6 107 31-162 2-108 (350)
9 2pg9_A Phosphomevalonate kinas 99.8 2.6E-20 9.1E-25 154.9 9.8 101 31-162 4-112 (337)
10 1kkh_A Mevalonate kinase; mixe 99.8 5.1E-19 1.7E-23 144.7 10.2 111 31-162 6-120 (317)
11 3gon_A Phosphomevalonate kinas 99.8 6.7E-19 2.3E-23 144.0 8.7 105 31-162 2-110 (335)
12 4hac_A Mevalonate kinase; GHMP 99.7 4.7E-18 1.6E-22 140.4 8.1 99 29-162 20-118 (321)
13 2x7i_A Mevalonate kinase; tran 99.7 1E-17 3.6E-22 136.3 8.9 99 31-162 7-107 (308)
14 2hfs_A Mevalonate kinase, puta 99.6 1.1E-14 3.7E-19 119.6 9.3 102 31-162 14-118 (332)
15 2ww4_A 4-diphosphocytidyl-2C-m 99.5 5.8E-14 2E-18 114.0 7.4 94 32-161 4-109 (283)
16 2oi2_A Mevalonate kinase; enzy 99.5 3E-14 1E-18 114.6 4.9 89 31-162 6-95 (292)
17 2v8p_A 4-diphosphocytidyl-2-C- 99.4 4.5E-13 1.5E-17 107.7 7.5 91 31-161 5-101 (271)
18 2gs8_A Mevalonate pyrophosphat 99.4 1.5E-13 5.2E-18 112.5 3.4 104 31-161 9-112 (317)
19 3qt5_A Mevalonate diphosphate 99.3 2.2E-12 7.6E-17 107.0 6.1 104 31-161 10-114 (332)
20 1h72_C HK, homoserine kinase; 99.2 3.1E-11 1.1E-15 97.3 9.2 93 31-162 3-97 (296)
21 1uek_A 4-(cytidine 5'-diphosph 99.1 6.7E-11 2.3E-15 94.9 6.1 86 35-161 5-96 (275)
22 3pyf_A 4-diphosphocytidyl-2-C- 98.8 1.8E-08 6.2E-13 82.5 10.0 97 31-161 6-108 (306)
23 1fi4_A Mevalonate 5-diphosphat 98.4 2.6E-08 8.9E-13 84.8 -0.1 97 31-161 26-143 (416)
24 3hul_A HSK, HK, homoserine kin 97.7 0.00011 3.7E-09 59.7 7.6 89 31-161 3-91 (298)
25 2hke_A Diphosphomevalonate dec 96.9 0.0034 1.2E-07 52.4 8.5 80 49-161 32-117 (380)
26 3lto_A Mevalonate diphosphate 95.7 0.0096 3.3E-07 49.0 4.4 36 120-161 77-112 (323)
27 3f0n_A Mevalonate pyrophosphat 94.4 0.057 2E-06 45.9 5.5 22 139-161 122-143 (414)
28 2daf_A FLJ35834 protein; hypot 31.4 26 0.00089 24.4 2.2 34 6-40 33-66 (118)
29 2iuw_A Alkylated repair protei 24.7 2.3E+02 0.0077 21.4 9.9 63 4-69 104-172 (238)
30 3i3q_A Alpha-ketoglutarate-dep 24.5 2.2E+02 0.0076 21.2 7.7 63 4-68 77-148 (211)
31 3s57_A Alpha-ketoglutarate-dep 23.4 2.2E+02 0.0077 20.9 6.4 62 5-69 79-146 (204)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.96 E-value=6.5e-29 Score=217.73 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=103.9
Q ss_pred CCChHH---HHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEc--CCCeEEEEeCC
Q 031299 6 WPTEDE---LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS--GDTEVVLRSGQ 80 (162)
Q Consensus 6 ~~~~~~---~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~--~~~~i~i~s~~ 80 (162)
++++.. ..++++.|.+.||.+|+ .+++||||||||||||||+||+||||||+++|+++++++ +|++++|+|.+
T Consensus 14 ~~~~~~~~R~~~l~~~F~~~fg~~p~--~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~ 91 (520)
T 3v2u_C 14 DLPRSFEQKHLAVVDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD 91 (520)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESS
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCCCC--EEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECC
Confidence 555533 46789999999999998 789999999999999999999999999999999999998 78899999987
Q ss_pred CC-CeeEEEc--CCCCCCccccccccccccccccccccccCHHHHHHHHH----HHHHHc------CCCCCCcEEEEEEc
Q 031299 81 FD-GEVRFRI--DEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGAL----YALQSR------GNILTEGIIGYICG 147 (162)
Q Consensus 81 ~~-~~~~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl----~~l~~~------g~~~~~G~~i~i~s 147 (162)
.. ...+|++ ++.... +. .....|++|++|++ ..+++. |..+ .||+++|.|
T Consensus 92 ~~~~~~~~~l~~~~~~~~---------------i~-~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G~~i~i~s 154 (520)
T 3v2u_C 92 PKFAQRKFDLPLDGSYMA---------------ID-PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VGAQIFCQS 154 (520)
T ss_dssp TTSCCEEEECCTTCCCCC---------------CC-TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CCEEEEEEE
T ss_pred CCCCceEEEeccCccccc---------------cC-cccccHHHHHHHHHHHHHHHHHhhcccccccCCC-CceEEEEec
Confidence 54 2356776 321000 00 13578999999865 334442 3455 799999999
Q ss_pred ccCCCCCCccccc
Q 031299 148 SDNLDSSGLSSSA 160 (162)
Q Consensus 148 ~iP~~gsGLsSSA 160 (162)
+||+ |+|| |||
T Consensus 155 ~vP~-gsGL-SAA 165 (520)
T 3v2u_C 155 DIPT-GGGL-SSA 165 (520)
T ss_dssp CCCT-TSSH-HHH
T ss_pred CCCC-CCCH-HHH
Confidence 9998 9999 443
No 2
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.93 E-value=4.4e-25 Score=188.07 Aligned_cols=132 Identities=33% Similarity=0.456 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCC--CeeEE
Q 031299 10 DELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD--GEVRF 87 (162)
Q Consensus 10 ~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~--~~~~~ 87 (162)
..++++++.|.+.||.+|+ ++.++|||||||+|||+||+|+.+|++||++++++.+++++++.+++.+.+++ ...++
T Consensus 29 ~~~~~~~~~f~~~~g~~~~-~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i~i~~~~~~~~~~~~~ 107 (419)
T 1pie_A 29 TVLSALTEKFAEVFGDTKE-VEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEF 107 (419)
T ss_dssp CHHHHHHHHHHHHHSCCCS-CEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCc-eEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEEEEEECCCCCcceeEE
Confidence 4568899999999999885 35689999999999999999999999999999999999988878888876653 34556
Q ss_pred EcCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 88 RIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 88 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
+++++.. .....|.+|+++++..|++.++.+..||++.|.++||+ ++|||||||+
T Consensus 108 ~~~~~~~-------------------~~~~~~~n~v~~~~~~l~~~g~~~~~g~~i~i~s~IP~-gaGLGSSaA~ 162 (419)
T 1pie_A 108 DLDEVEK-------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPT-ASGLSSSASL 162 (419)
T ss_dssp ETTCTTS-------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCT-TSSSCHHHHH
T ss_pred ecccccC-------------------CCCcCHHHHHHHHHHHHHHhCCCCCCCEEEEEECCCCC-CCChhHHHHH
Confidence 6665421 13468999999999999887655436999999999998 9999999974
No 3
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.92 E-value=1e-24 Score=184.58 Aligned_cols=131 Identities=27% Similarity=0.356 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCe----e
Q 031299 10 DELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----V 85 (162)
Q Consensus 10 ~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~----~ 85 (162)
..++++++.|.+.||.+|. +.++|||||||+|||+||+||.+|++||++++++.+++++++.++|.+.+++.. .
T Consensus 18 ~~~~~~~~~f~~~~~~~~~--~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~ 95 (399)
T 1wuu_A 18 ELLAEARRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRL 95 (399)
T ss_dssp HHHHHHHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEE
T ss_pred HHHHHHHHHHHHHhCCCCC--EEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEEEEECCCCCccccce
Confidence 5678899999999999887 789999999999999999999999999999999999998888899988765422 2
Q ss_pred EEEcCCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 86 RFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 86 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
+++++.+... .......|.+|+++++..+ .+..+ .||++.|.++||+ ++|||||||+
T Consensus 96 ~~~~~~~~~~----------------~~~~~~~~~n~v~~a~~~l--~~~~~-~g~~i~i~s~IP~-gaGLGSSaA~ 152 (399)
T 1wuu_A 96 QFPLPTAQRS----------------LEPGTPRWANYVKGVIQYY--PAAPL-PGFSAVVVSSVPL-GGGLSSSASL 152 (399)
T ss_dssp EEECCCSSCC----------------CCCCSSGGGHHHHHHHHHC--SSSCC-CEEEEEEEECSCT-TSSSCHHHHH
T ss_pred EEecCccccc----------------cccCCCCHHHHHHHHHHHh--cCCCC-CCeEEEEECCCCC-CCCccHHHHH
Confidence 4555422100 0023567999999999888 45555 6999999999998 9999999974
No 4
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=8.7e-25 Score=183.34 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=94.9
Q ss_pred EEEEccceeecccccccc------CCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHA 104 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy------~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~ 104 (162)
++++|||||||+|||+|| +||.||++|||+++++++++++++.++|++.+++...++++++.
T Consensus 4 i~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~~~~~~~~~~~~~------------ 71 (357)
T 3k85_A 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQ------------ 71 (357)
T ss_dssp EEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEECCSS------------
T ss_pred EEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECCCCceEEEecccc------------
Confidence 568999999999999999 99999999999999999999999999999988875556666541
Q ss_pred cccccccccccccCHHHHHHHHHHHHHHcCCC-CCCcEEEEEEcccCCCCCCcccccCC
Q 031299 105 VYASDSAKIKEECKWGNYARGALYALQSRGNI-LTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 105 ~~~~~~~~~~~~~~w~~y~~gvl~~l~~~g~~-~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
.+...|.+|+++++..|.+.+.. . .||++.+.++||+ ++|||||||+
T Consensus 72 ---------~~~~~~~~~v~~~~~~l~~~~~~~~-~g~~i~i~~~iP~-g~GLgSSaa~ 119 (357)
T 3k85_A 72 ---------LEIDGEASLIKGVYNRIIRDYRLEP-KSFKITTYNDAPA-GSGLGTSSTM 119 (357)
T ss_dssp ---------CCCCSSSHHHHHHHHHHHHHTTCCC-CCEEEEEEESSCS-SSSSCHHHHH
T ss_pred ---------ccccchHHHHHHHHHHHHHhcCCCC-CCEEEEEecCCCC-CCCchHHHHH
Confidence 13468999999999999887653 4 6999999999998 9999999984
No 5
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.92 E-value=2.4e-24 Score=186.88 Aligned_cols=130 Identities=27% Similarity=0.311 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhCCCCcceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCC-eeEEEc
Q 031299 11 ELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFRI 89 (162)
Q Consensus 11 ~~~~~~~~f~~~fg~~p~~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~-~~~~~l 89 (162)
..+++++.|.+.||.+|. ++++|||||+|+|||+||+|+.+|++||++++++.+++++++.++|.+.+.+. .+++++
T Consensus 38 r~~~~~~~f~~~fg~~~~--~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~ 115 (478)
T 2a2c_A 38 RLLKLKEMFNSKFGSIPK--FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSA 115 (478)
T ss_dssp HHHHHHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESSTTSCCEEECC
T ss_pred HHHHHHHHHHHHhCCCCC--EEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeEEEEECCCCCcceeccc
Confidence 457889999999999987 78999999999999999999999999999999999999888789998765421 234444
Q ss_pred CCCCCCccccccccccccccccccccccCHHHHHHHHHHHHHHc-CC-CCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 90 DEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSR-GN-ILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~-~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
+++... .....|.+|+++.+..+.+. +. .. .||++.|.++||+ |+|||||||+
T Consensus 116 ~~l~~~------------------~~~~~~~n~v~~a~~~v~~~~~~~~~-~g~~i~i~s~IP~-g~GLgSSAA~ 170 (478)
T 2a2c_A 116 NNIQID------------------KTKPLWHNYFLCGLKGIQEHFGLSNL-TGMNCLVDGNIPP-SSGLSSSSAL 170 (478)
T ss_dssp CCC--C------------------CSSCCHHHHHHHHHHHHHHHTTCCSC-CCEEEEEEECSCT-TSSSCHHHHH
T ss_pred hhcccC------------------CCcccHHHHHHHHHHHHHHHHhccCC-CceEEEEECCCCC-CCCchHHHHH
Confidence 443211 13578999995554443322 22 23 6999999999998 9999999984
No 6
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.87 E-value=2.6e-22 Score=168.84 Aligned_cols=110 Identities=22% Similarity=0.187 Sum_probs=85.3
Q ss_pred eEEEEccceeeccccccccC-CceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccc
Q 031299 30 VRVVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYAS 108 (162)
Q Consensus 30 ~~~v~APGRv~L~GEH~Dy~-gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (162)
+.+++|||||+|+|||+||+ ||+||++||++++++.++++++. +|++.+++...+++++....
T Consensus 6 ~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~--~i~s~~~~~~~~~~~~~~~~-------------- 69 (365)
T 3k17_A 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERN--ELWIPHYENPVSWPIGGELK-------------- 69 (365)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSC--EEECTTCSSCBCCCTTSCCC--------------
T ss_pred EEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCc--EEEecCCCcceeeecccCCC--------------
Confidence 36799999999999999995 99999999999999999998875 57777765434444332110
Q ss_pred cccccccccCHHHHHHHHHHHHH----HcCCCCCCcEEEEEEcccCCC---CCCcccccCC
Q 031299 109 DSAKIKEECKWGNYARGALYALQ----SRGNILTEGIIGYICGSDNLD---SSGLSSSAAC 162 (162)
Q Consensus 109 ~~~~~~~~~~w~~y~~gvl~~l~----~~g~~~~~G~~i~i~s~iP~~---gsGLsSSAAl 162 (162)
.....| +|+++++..+. +.|... .||++.|.++||+. ++|||||||+
T Consensus 70 -----~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLgSSaa~ 123 (365)
T 3k17_A 70 -----PDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLGSSAAA 123 (365)
T ss_dssp -----CSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSCHHHHH
T ss_pred -----CCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCcccHHHHH
Confidence 134567 99999988654 346666 79999999999950 4599999984
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.87 E-value=1e-22 Score=172.06 Aligned_cols=130 Identities=18% Similarity=0.108 Sum_probs=88.0
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCc---ccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPT---NSVKKHHAVYA 107 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~ 107 (162)
++++|||||+|+|||+||+||.||++||++++++.+++++++.+++.+.+++...+|+++++.... .++........
T Consensus 6 ~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
T 1kvk_A 6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPTL 85 (395)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-------------
T ss_pred EEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCCCCceEEEEhHhhhhhhcccccccccccccH
Confidence 679999999999999999999999999999999999999888899987766533566665432100 00000000000
Q ss_pred c--cc-cccccccCHHHH-----HHHHHHHHHHc-CC--CCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 108 S--DS-AKIKEECKWGNY-----ARGALYALQSR-GN--ILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 108 ~--~~-~~~~~~~~w~~y-----~~gvl~~l~~~-g~--~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
. +. ........|.+| ++++++.+.+. +. .. .||++.|.++||+ |+|||||||+
T Consensus 86 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~-~g~~i~i~s~iP~-g~GLGSSaA~ 149 (395)
T 1kvk_A 86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTL-PSLDIMVWSELPP-GAGLGSSAAY 149 (395)
T ss_dssp ---CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSC-CCEEEEEEESSCT-TSSSCHHHHH
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCC-CCEEEEEEecCCC-CCCccHHHHH
Confidence 0 00 000013478888 45555555443 33 13 6999999999998 9999999974
No 8
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.82 E-value=8e-21 Score=157.02 Aligned_cols=107 Identities=28% Similarity=0.379 Sum_probs=85.1
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
.+++|||||||+|||+||+|+.+|++||++++++.+++++++.+++.+.+.+. ..+. +..
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~--~~~~--l~~---------------- 61 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHFGEER--KFSL--NDL---------------- 61 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTTTEEE--EECT--TCC----------------
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEECCCCc--cccc--cCC----------------
Confidence 46899999999999999999999999999999999999877667775432211 1111 100
Q ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 111 AKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
.+...|.+|+++++..+++.+... .|+++.|.++||+ ++|||||||+
T Consensus 62 ---~~~~~~~~~~~~~~~~l~~~~~~~-~g~~i~i~s~IP~-g~GLGSSaA~ 108 (350)
T 2cz9_A 62 ---RKENSWIDYVKGIFWVLKESDYEV-GGIKGRVSGNLPL-GAGLSSSASF 108 (350)
T ss_dssp ---CCCSSTHHHHHHHHHHHHHTTCCC-CEEEEEEECSCCT-TSSSCHHHHH
T ss_pred ---CCCCcHHHHHHHHHHHHHhcCCCC-CCeEEEEECCCCC-CCCcchHHHH
Confidence 024689999999998888776655 6999999999998 9999999973
No 9
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.82 E-value=2.6e-20 Score=154.87 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=81.3
Q ss_pred EEEEccceeecccccc-ccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHI-DHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~-Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
+.++|||||+|+|||+ ||+|++||++||++++++.++++++ ++|.+..++.. ++.
T Consensus 4 i~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~~i~s~~~~~~----~~~------------------ 59 (337)
T 2pg9_A 4 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--YRIYSDMFDFA----VDL------------------ 59 (337)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--CEEEETTSSSC----BCS------------------
T ss_pred EEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc--EEEecCCCCce----eee------------------
Confidence 4689999999999999 7779999999999999999999864 77887665421 111
Q ss_pred ccccccccCHHHHHHHHHHHHHH----cCCCCCCcEEEEEEcccCCCC---CCcccccCC
Q 031299 110 SAKIKEECKWGNYARGALYALQS----RGNILTEGIIGYICGSDNLDS---SGLSSSAAC 162 (162)
Q Consensus 110 ~~~~~~~~~w~~y~~gvl~~l~~----~g~~~~~G~~i~i~s~iP~~g---sGLsSSAAl 162 (162)
.+...| +|+++++..+.+ .|... .||++.|.++||+ + +|||||||+
T Consensus 60 ----~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~-~g~k~GLgSSaa~ 112 (337)
T 2pg9_A 60 ----RPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMER-EGKKFGLGSSGSV 112 (337)
T ss_dssp ----SCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEE-TTEECSSCHHHHH
T ss_pred ----cCCCCc-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEccCCC-CCCCccccHHHHH
Confidence 123467 899888877654 35666 7999999999998 9 999999984
No 10
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.78 E-value=5.1e-19 Score=144.69 Aligned_cols=111 Identities=18% Similarity=0.255 Sum_probs=84.1
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
+.++|||||||+|||+||+|+.+|++||++++++.++++++..+++.+.+++...++++.+.. +
T Consensus 6 ~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~-~--------------- 69 (317)
T 1kkh_A 6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIK-N--------------- 69 (317)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGG-G---------------
T ss_pred EEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEEEEeCCCCCceEEEeccCC-c---------------
Confidence 678999999999999999999999999999999999998777788887655434455554311 0
Q ss_pred cccccccCHHHHHHHHHHHHHHc----CCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 111 AKIKEECKWGNYARGALYALQSR----GNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~----g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
.....| ++++.++..+.+. +.....|+++.+.++||+ ++|||||||+
T Consensus 70 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~-~~GLGsSsa~ 120 (317)
T 1kkh_A 70 ---INPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPI-SCGLGSSASI 120 (317)
T ss_dssp ---CCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCS-SSSSCHHHHH
T ss_pred ---cCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCC-CCCchHHHHH
Confidence 123455 5566666655432 332226999999999998 9999999973
No 11
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.77 E-value=6.7e-19 Score=143.95 Aligned_cols=105 Identities=18% Similarity=0.018 Sum_probs=81.3
Q ss_pred EEEEccceeeccccccccC-CceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~-gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
+.|+|||||.|+|||++++ |+++|++||++++++.++++++.+ |++..++... ++. ..
T Consensus 2 i~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~--i~~~~~~~~~--~~~---~~-------------- 60 (335)
T 3gon_A 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR--IYSDMFDFAV--DLR---PN-------------- 60 (335)
T ss_dssp EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE--EEETTSSSCB--CSS---CC--------------
T ss_pred EEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCE--EEEeCCCccc--ccC---cC--------------
Confidence 4689999999999998887 999999999999999999988754 4554443211 111 00
Q ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCC---CCcccccCC
Q 031299 110 SAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDS---SGLSSSAAC 162 (162)
Q Consensus 110 ~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~g---sGLsSSAAl 162 (162)
....-|..+++.+...+.+.+..+ .||++.|+|++|. + +|||||||+
T Consensus 61 ----~~~~~~~~~i~~~~~~l~~~~~~~-~~~~i~I~s~lp~-~~~~~GLgSSaa~ 110 (335)
T 3gon_A 61 ----PDYSLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMER-EGKKFGLGSSGSV 110 (335)
T ss_dssp ----TTTHHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEE-TTEECSSCHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecCCc-ccCCCCcchHHHH
Confidence 122345677788888888888877 7999999999997 7 599999984
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.73 E-value=4.7e-18 Score=140.35 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred ceEEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccc
Q 031299 29 EVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYAS 108 (162)
Q Consensus 29 ~~~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (162)
+++.++|||||||+|||+||+||.+|++||++++++.+++.++ ++|.+.++. ..+..
T Consensus 20 ~mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i~i~~~~~~-------~~~~~-------------- 76 (321)
T 4hac_A 20 HMVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--ITIQSQIGR-------TGLDF-------------- 76 (321)
T ss_dssp CCEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--EEEEETTEE-------ESSCT--------------
T ss_pred CEEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--EEEEECCCC-------ccccc--------------
Confidence 4577999999999999999999999999999999999998653 787764321 11110
Q ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 109 DSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 109 ~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....|..|+ +..+++.+ .. .||++.|.++||+ ++|||||||+
T Consensus 77 ------~~~~~~~~~---~~~l~~~~-~~-~g~~i~i~~~iP~-g~GLGSSsa~ 118 (321)
T 4hac_A 77 ------EKHPYVSAV---IEKMRKSI-PI-NGVFLTVDSDIPV-GSGLGSSAAV 118 (321)
T ss_dssp ------TTSHHHHHH---HHHHTTTS-CC-CCEEEEEEECCCS-CTTCCHHHHH
T ss_pred ------chhHHHHHH---HHHHHHhC-CC-CCEEEEEECCCCC-CCCccHHHHH
Confidence 122454444 44454444 33 6999999999998 9999999974
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.72 E-value=1e-17 Score=136.35 Aligned_cols=99 Identities=22% Similarity=0.159 Sum_probs=78.9
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccc-eEEEEEEcCCCe-EEEEeCCCCCeeEEEcCCCCCCccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKG-ILLGFVPSGDTE-VVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYAS 108 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~-~~v~~~~~~~~~-i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (162)
..++|||||||+|||+||+|+.+|+++|++. +++.+++++++. +++.+..++. .+.
T Consensus 7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~~i~~~~~~~~~-------~~~--------------- 64 (308)
T 2x7i_A 7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDG-------MLY--------------- 64 (308)
T ss_dssp EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSS-------CCC---------------
T ss_pred eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCCeeEEEecCCCC-------Chh---------------
Confidence 5689999999999999999999999999985 999999887655 6665432210 111
Q ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 109 DSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 109 ~~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
....|.+|+++++..+.+. . .|+++.+.++||+ ++|||||||+
T Consensus 65 ------~~~~~~~~v~~~~~~~~~~---~-~g~~i~i~~~iP~-g~GLGSSsa~ 107 (308)
T 2x7i_A 65 ------DAPDHLKSLVNRFVELNNI---T-EPLAVTIQTNLPP-SRGLGSSAAV 107 (308)
T ss_dssp ------CTTSCHHHHHHHHHHHTTC---C-SCEEEEEEECCCT-TSSSCHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHhh---C-CCeEEEEeccCCC-CCCccHHHHH
Confidence 1246899999998887653 3 5999999999998 9999999973
No 14
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.55 E-value=1.1e-14 Score=119.58 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=70.8
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcC-CCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~-~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
..++|||||||+|||.||+|+.+++++|++++++.+++++ ++.+++.+.+. .+..
T Consensus 14 ~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~~~~~~~~~---------~~~~--------------- 69 (332)
T 2hfs_A 14 GKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRP---------AIPG--------------- 69 (332)
T ss_dssp SCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCC---------CCTT---------------
T ss_pred EEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCCCCeEEEecCc---------cccc---------------
Confidence 5689999999999999999999999999999999999874 34455543211 1100
Q ss_pred ccccccccCHHHHH-HHHHHHHHHcCCCC-CCcEEEEEEcccCCCCCCcccccCC
Q 031299 110 SAKIKEECKWGNYA-RGALYALQSRGNIL-TEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 110 ~~~~~~~~~w~~y~-~gvl~~l~~~g~~~-~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
......+.+ +++...+...+... ..||++.+.++||+ ++|||||||+
T Consensus 70 -----~~~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~-g~GLGSSsA~ 118 (332)
T 2hfs_A 70 -----YIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVP-SSGIGASASD 118 (332)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCC-CTTSCHHHHH
T ss_pred -----cccccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCC-CCCccHHHHH
Confidence 000112222 33333344445432 15999999999998 9999999973
No 15
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.47 E-value=5.8e-14 Score=113.97 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=72.7
Q ss_pred EEEccceeec----cccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccc
Q 031299 32 VVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVY 106 (162)
Q Consensus 32 ~v~APGRv~L----~GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 106 (162)
.++||||||| +|+|+| |+++.+++++|+++.++.+++++++.+++.+. . ..+
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i~i~~~-~--------~~~-------------- 60 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTP-V--------EGV-------------- 60 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSC-B--------TTB--------------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcEEEEeC-C--------CCC--------------
Confidence 3689999999 899999 99999999999999999999887666766432 1 111
Q ss_pred cccccccccccCHHHHHHHHHHHHHHc-------CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 107 ASDSAKIKEECKWGNYARGALYALQSR-------GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 107 ~~~~~~~~~~~~w~~y~~gvl~~l~~~-------g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
+. ..||+..++..+.+. |. . .|+++.+.++||+ ++|||||||
T Consensus 61 --------~~--~~nlv~~a~~~~~~~~~~~~~~g~-~-~g~~i~i~~~IP~-g~GLGsSsa 109 (283)
T 2ww4_A 61 --------EH--EDNLIVRAARLLMKTAADSGRLPT-G-SGANISIDKRLPM-GGGLGGGSS 109 (283)
T ss_dssp --------CG--GGSHHHHHHHHHHHHHHHTTCSCT-T-CEEEEEEECCCC--CTTSCHHHH
T ss_pred --------CC--cccHHHHHHHHHHHHhhhhcccCC-C-CceEEEEEeCCCC-CCCccHHHH
Confidence 11 146777777766543 54 2 6999999999998 999999997
No 16
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.46 E-value=3e-14 Score=114.61 Aligned_cols=89 Identities=19% Similarity=0.046 Sum_probs=60.2
Q ss_pred EEEEccceeeccccccccCCceeEEeee-ccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTI-NKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai-~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
..++|||||||+|||+||+|+.+++++| ++++++.+++++ +.+++.+.+
T Consensus 6 ~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~-~~~~i~~~~----------------------------- 55 (292)
T 2oi2_A 6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE-SPWRLYEED----------------------------- 55 (292)
T ss_dssp EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS-SCCCCCCCS-----------------------------
T ss_pred EEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC-CceEEEecC-----------------------------
Confidence 5689999999999999999999999999 999999998863 233321100
Q ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 110 SAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 110 ~~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
..+.+.-+...+ .++.. .|+++.|.++||+ ++|||||||+
T Consensus 56 ---------~~~~~~~~~~~~--~~~~~-~g~~i~i~~~iP~-g~GLGSSsa~ 95 (292)
T 2oi2_A 56 ---------TLSMAVYASLEY--LNITE-ACIRCEIDSAIPE-KRGMGSSAAI 95 (292)
T ss_dssp ---------HHHHHHHHHHHH--HTCSC-CCEEEEEC----C-CGGGSCHHHH
T ss_pred ---------ccchhhhhhHHH--hcccC-CceEEEEEecCCC-CCCchHHHHH
Confidence 001111111222 14433 6999999999998 9999999973
No 17
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.40 E-value=4.5e-13 Score=107.67 Aligned_cols=91 Identities=14% Similarity=0.017 Sum_probs=72.2
Q ss_pred EEEEccceeec----cccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv~L----~GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
+.++||||||| +|+|.| |+++.++.++|+++.++ +++ +..+++.. +.+
T Consensus 5 ~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~i~i~~-----------~~~------------- 57 (271)
T 2v8p_A 5 IKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGVLRVET-----------NIG------------- 57 (271)
T ss_dssp EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESSCEEEE-----------SSC-------------
T ss_pred EEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCeEEEEe-----------CCC-------------
Confidence 56899999999 899999 99999999999999999 887 33455543 111
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 106 YASDSAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
...|.+++..++..+.+. +.. .|+++.|.++||+ ++|||||||
T Consensus 58 ----------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~-g~GLGsSsa 101 (271)
T 2v8p_A 58 ----------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPP-GAGLGGGSS 101 (271)
T ss_dssp ----------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCT-TSSSCHHHH
T ss_pred ----------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCC-CCCCchHHH
Confidence 113667787777777654 543 6999999999998 999999997
No 18
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.37 E-value=1.5e-13 Score=112.54 Aligned_cols=104 Identities=15% Similarity=0.039 Sum_probs=75.3
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
..++||+||+|+|+|+||++|+++|....+.+.+. ...++-+++.++.+++ ..++.++...
T Consensus 9 ~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~~~~~~~~-~~~~~~~g~~----------------- 69 (317)
T 2gs8_A 9 ITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVSFLPDTAT-SDQFYINGIL----------------- 69 (317)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEEECCTTCC-SCEEEETTEE-----------------
T ss_pred EEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEEEEcCCCC-eEEEEECCCc-----------------
Confidence 56999999999999999999999999988887775 3333323333222222 2344443310
Q ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 111 AKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
....|.++++.++..+.+.+. .|+++.+.++||. ++|||||||
T Consensus 70 ----~~~~~~n~v~~~~~~~~~~~~---~g~~I~i~~~IP~-~~GLGSSaA 112 (317)
T 2gs8_A 70 ----QNDEEHTKISAIIDQFRQPGQ---AFVKMETQNNMPT-AAGLSSSSS 112 (317)
T ss_dssp ----CCHHHHHHHHHHHTTTCCTTC---CCEEEEEECCSCG-GGCCCHHHH
T ss_pred ----cccchHHHHHHHHHHHHHhcC---CCeEEEEeCCCCC-CCchHHHHH
Confidence 123689999999888765532 5899999999998 999999997
No 19
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.30 E-value=2.2e-12 Score=107.04 Aligned_cols=104 Identities=14% Similarity=0.011 Sum_probs=77.9
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
..++||+||+|+|+|+||+++.+||+...+++++. ...++.+++ .+.+++ ..++.++.-.
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v~-~~~~~~-~~~~~i~g~~----------------- 69 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKVT-FDPDFT-EDCLILNGNE----------------- 69 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE-EETTCS-SCEEEETTEE-----------------
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEEE-EcCCCC-ccEEEECCcc-----------------
Confidence 45899999999999999999999999999998887 333433444 234443 2345554311
Q ss_pred cccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 111 AKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
...+|.+++..++..+++. +.. .|+++.+.++||. ++|||||||
T Consensus 70 ----~~~~~~n~v~~~~~~~~~~~~~~--~~~~i~~~~~iP~-~~GLgSSaa 114 (332)
T 3qt5_A 70 ----VNAKEKEKIQNYMNIVRDLAGNR--LHARIESENYVPT-AAGLASSAS 114 (332)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEESCG-GGTCCCHHH
T ss_pred ----CCcchHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCC-CCCcchHHH
Confidence 1234889998888887764 543 5899999999998 999999997
No 20
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.23 E-value=3.1e-11 Score=97.27 Aligned_cols=93 Identities=22% Similarity=0.162 Sum_probs=69.0
Q ss_pred EEEEccceeeccccccccCCceeEEeeecc-ceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINK-GILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~-~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
+.++||+|++++|+|.| ++++++|. .+++.+.+++++.+++.... ..+
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~~~i~~~~---------~~~----------------- 51 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKEIIIEVDD---------KNI----------------- 51 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSSEEEEESC---------TTS-----------------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCeEEEEEcC---------CcC-----------------
Confidence 46899999999999877 89999998 45666766655456554211 111
Q ss_pred ccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccCC
Q 031299 110 SAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAAC 162 (162)
Q Consensus 110 ~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAAl 162 (162)
+...|.+|+..++..+.+. +.. .|+++.+.++||+ ++|||||||+
T Consensus 52 -----~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~-g~GLGSSsa~ 97 (296)
T 1h72_C 52 -----PTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKA-GSGLGSSAAS 97 (296)
T ss_dssp -----CCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCT-TSSSCHHHHH
T ss_pred -----CCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCC-CCCccHHHHH
Confidence 1223788888888887664 544 5999999999998 9999999973
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.12 E-value=6.7e-11 Score=94.91 Aligned_cols=86 Identities=14% Similarity=-0.016 Sum_probs=65.6
Q ss_pred ccceeec----cccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccccccc
Q 031299 35 SPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASD 109 (162)
Q Consensus 35 APGRv~L----~GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 109 (162)
||||||| .|+|.| |+...++.++|+++.++.+++. .+++.... .+
T Consensus 5 aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~---~~~i~~~~----------~~----------------- 54 (275)
T 1uek_A 5 APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV---SSGLHFQG----------PY----------------- 54 (275)
T ss_dssp EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE---SSCEEEES----------TT-----------------
T ss_pred ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC---cEEEEEcC----------CC-----------------
Confidence 9999999 699999 9999999999999999998872 23332111 11
Q ss_pred ccccccccCHHHHHHHHHHHHHHc-CCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 110 SAKIKEECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 110 ~~~~~~~~~w~~y~~gvl~~l~~~-g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
+ ..+++..++..+.+. +.. .|+++.+.++||+ ++|||||||
T Consensus 55 -----~---~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~IP~-g~GLGSSsa 96 (275)
T 1uek_A 55 -----G---RENLAYRAASLYLEAAGQP--GGVRILLEKRIPE-GAGLGGGSS 96 (275)
T ss_dssp -----G---GGSHHHHHHHHHHHHTTCC--CEEEEEEECCSCS-SSSSCHHHH
T ss_pred -----C---CccHHHHHHHHHHHHhCCC--CCEEEEEecCCCC-cCcccHHHH
Confidence 1 135676777776554 543 6999999999998 999999997
No 22
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=98.82 E-value=1.8e-08 Score=82.48 Aligned_cols=97 Identities=14% Similarity=0.011 Sum_probs=69.9
Q ss_pred EEEEccceeec----cccccc-cCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccccccc
Q 031299 31 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAV 105 (162)
Q Consensus 31 ~~v~APGRv~L----~GEH~D-y~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~ 105 (162)
+.++||++||| .|.+.| |+.-..+-++|+++-.+.+.+.++..+.+...... .+..
T Consensus 6 ~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~i~~~g~~~~--------~~p~----------- 66 (306)
T 3pyf_A 6 VTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLSLELVGEGAD--------QLPT----------- 66 (306)
T ss_dssp EEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCEEEEESTTGG--------GSCC-----------
T ss_pred EEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCEEEEeCCCcc--------CCCC-----------
Confidence 56899999999 999999 88888899999999889888866545554321100 1110
Q ss_pred ccccccccccccCHHHHHHHHHHHHHH-cCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 106 YASDSAKIKEECKWGNYARGALYALQS-RGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 106 ~~~~~~~~~~~~~w~~y~~gvl~~l~~-~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
+..|++.-++..+.+ .|.. .|+++.|.++||+ ++|||||||
T Consensus 67 ------------~~~Nlv~~A~~~l~~~~g~~--~~~~i~i~~~iP~-~~GLGsssa 108 (306)
T 3pyf_A 67 ------------DERNLAWQAAELMAEHVGRA--PDVSIMIDKSIPV-AGGMAGGSA 108 (306)
T ss_dssp ------------STTSHHHHHHHHHHHHTTCC--CCEEEEEEECSCT-TSSSCHHHH
T ss_pred ------------CCccHHHHHHHHHHHHhCCC--CCeEEEEecCCCC-CCCcchHHH
Confidence 113455455555544 3543 5999999999998 999999997
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.42 E-value=2.6e-08 Score=84.84 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=59.9
Q ss_pred EEEEccceeeccccccccCCceeEEee------ec---cceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCcccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMT------IN---KGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKK 101 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~A------i~---~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~ 101 (162)
..++||+||.|++.|.+++++..+|+. |+ +++.+.+...+ +++ ..++.++....
T Consensus 26 ~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~---------~~~-~~~i~i~G~~~------- 88 (416)
T 1fi4_A 26 ASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAP---------EFE-RDTLWLNGEPH------- 88 (416)
T ss_dssp EEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECT---------TCC-SCBCTTTCCBS-------
T ss_pred EEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcC---------CCC-ccEEEECCccc-------
Confidence 458999999999999999998866555 43 33333333211 111 11112221000
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHHHc-CC------C-----CCCcEEEEEEcccCCCCCCcccccC
Q 031299 102 HHAVYASDSAKIKEECKWGNYARGALYALQSR-GN------I-----LTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 102 ~~~~~~~~~~~~~~~~~w~~y~~gvl~~l~~~-g~------~-----~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.. . .++++.++..+++. +. . . .|+++.+.++||. ++|||||||
T Consensus 89 -------------~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~I~i~~~IP~-~aGLGSSAA 143 (416)
T 1fi4_A 89 -------------SI-D-NERTQNCLRDLRQLRKEMESKDASLPTLSQ-WKLHIVSENNFPT-AAGLASSAA 143 (416)
T ss_dssp -------------SS-S-SSSHHHHHHHHHHHHHHHHTTCTTSCCGGG-SCEEEEEEECCCT-TSCCCHHHH
T ss_pred -------------cc-c-chHHHHHHHHHHHHhccccccccccccccC-CcEEEEEecCCcC-cCCccHHHH
Confidence 00 1 34566676666553 22 0 2 6899999999998 999999997
No 24
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=97.68 E-value=0.00011 Score=59.66 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=57.5
Q ss_pred EEEEccceeeccccccccCCceeEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccc
Q 031299 31 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDS 110 (162)
Q Consensus 31 ~~v~APGRv~L~GEH~Dy~gg~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 110 (162)
+.+++|++.--+|. |.-+|.+||+++.++.+++..+ .+++... .. ..+..
T Consensus 3 ~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~~~-~~~i~~~-~~-------~~~p~---------------- 52 (298)
T 3hul_A 3 LRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEAD-SWYIEHN-IG-------GGIPH---------------- 52 (298)
T ss_dssp EEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEECS-SCEEECC-CC-------TTCCS----------------
T ss_pred EEEEEeeceeccCC-----CcchhhhhcccceEEEEEEcCC-ceEEEec-Cc-------ccCCC----------------
Confidence 45899999888888 6667889999998888875333 3555422 11 01110
Q ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 111 AKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 111 ~~~~~~~~w~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
..... .++++. .+.+ .. .|+++.|.++||+ ++|||||||
T Consensus 53 ----~~~nl--v~~a~~-~~~~---~~-~g~~i~i~~~iP~-~~GLGsssa 91 (298)
T 3hul_A 53 ----DETNV--IIETAL-NLAP---NL-TPHHLVMTCDIPP-ARGLGSSSA 91 (298)
T ss_dssp ----STTSH--HHHHHH-HHCT---TC-CCEEEEEEECSCT-TSSSSHHHH
T ss_pred ----CCCcH--HHHHHH-HHhc---cC-CceEEEEecCCCC-CCCccHHHH
Confidence 11111 123332 2222 23 6999999999998 999999997
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=96.91 E-value=0.0034 Score=52.39 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=50.9
Q ss_pred CCceeEEeeec---cceEEEEEEcCC-CeEEEEeCCCCCeeEEEcCCCCCCccccccccccccccccccccccCHHHHHH
Q 031299 49 QGGTVSAMTIN---KGILLGFVPSGD-TEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYAR 124 (162)
Q Consensus 49 ~gg~vl~~Ai~---~~~~v~~~~~~~-~~i~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~ 124 (162)
.+--.|.++|+ +++.+.+...++ ...++.. ++. ..+ . .-.+.+.
T Consensus 32 P~~dslglaL~~~~l~~~~~v~~~~~~~~~~i~i---~g~---~~~------------------------~--~~~~~v~ 79 (380)
T 2hke_A 32 PTNDSFSITLSASPFRSKTSVELRDDIETDTLRL---NGT---EVD------------------------V--GKTPRVQ 79 (380)
T ss_dssp BSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEE---TTE---EEC------------------------G--GGCHHHH
T ss_pred CCCCceEEEecCCCCceEEEEEECCCCCccEEEE---CCc---ccC------------------------c--hhHHHHH
Confidence 66678999999 898888876432 1223321 111 000 0 0134566
Q ss_pred HHHHHHHHc-CCC-CCCcEEEEEEcccCCCCCCcccccC
Q 031299 125 GALYALQSR-GNI-LTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 125 gvl~~l~~~-g~~-~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.++..+++. +.. ...|+++.+.++||. ++|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~I~~~~~IP~-aaGLGSSAA 117 (380)
T 2hke_A 80 SMLLHLRSTCPEELKNKKVNIVSENNFPT-AAGMASSAS 117 (380)
T ss_dssp HHHHHHHTSSCHHHHTCEEEEEEEECSCT-TSCCCHHHH
T ss_pred HHHHHHHHHhcccCCCCCEEEEEeccCCC-ccCcchHHH
Confidence 677777654 330 026899999999998 999999997
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=95.68 E-value=0.0096 Score=48.99 Aligned_cols=36 Identities=22% Similarity=0.053 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEcccCCCCCCcccccC
Q 031299 120 GNYARGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 120 ~~y~~gvl~~l~~~g~~~~~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
...++.++..++ .. .|+++.+.+++|. ++||+||||
T Consensus 77 ~~~i~~~l~~~~---~~--~gv~I~~~n~IP~-aaGLgSSAA 112 (323)
T 3lto_A 77 IDHLVRLKEYFG---YV--GGFLIQSSNNFPH-SSGLASSAS 112 (323)
T ss_dssp HHHHHHHHHHHT---CC--CCEEEEEEESSCT-TTTCCCHHH
T ss_pred HHHHHHHHHHhC---CC--CCEEEEEEeCCCC-ccCcchhHH
Confidence 444555555543 22 6999999999998 999999997
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=94.37 E-value=0.057 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=20.6
Q ss_pred CcEEEEEEcccCCCCCCcccccC
Q 031299 139 EGIIGYICGSDNLDSSGLSSSAA 161 (162)
Q Consensus 139 ~G~~i~i~s~iP~~gsGLsSSAA 161 (162)
.|+++.+.+++|. ++||+||||
T Consensus 122 ~~~~I~~~~~iP~-aaGLgSSaA 143 (414)
T 3f0n_A 122 YKVHVASVNNFPT-AAGLASSAA 143 (414)
T ss_dssp SCEEEEEEECCCG-GGCCCHHHH
T ss_pred CcEEEEEEeCCCC-CcCcchhHH
Confidence 4899999999998 999999997
No 28
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.40 E-value=26 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCCcceEEEEccceee
Q 031299 6 WPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRIC 40 (162)
Q Consensus 6 ~~~~~~~~~~~~~f~~~fg~~p~~~~~v~APGRv~ 40 (162)
+++...+.++++.+.+.|+..++...++++ ||+-
T Consensus 33 v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~-GKiL 66 (118)
T 2daf_A 33 FKVDTILKYLKDHFSHLLGIPHSVLQIRYS-GKIL 66 (118)
T ss_dssp ECSSSCSHHHHHHHHHHHTCCTTTEEEEET-TEEE
T ss_pred eCCCCcHHHHHHHHHhhhCCChHHEEEEEC-CeEc
Confidence 445566788999999999998876555555 7743
No 29
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=24.72 E-value=2.3e+02 Score=21.41 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCcceE-EEEccceeecccccccc---CC--ceeEEeeeccceEEEEEEc
Q 031299 4 FSWPTEDELKEMRNKVSEMSGRDAEEVR-VVVSPYRICPLGAHIDH---QG--GTVSAMTINKGILLGFVPS 69 (162)
Q Consensus 4 ~~~~~~~~~~~~~~~f~~~fg~~p~~~~-~v~APGRv~L~GEH~Dy---~g--g~vl~~Ai~~~~~v~~~~~ 69 (162)
+.|| +.+.++++..++.+|..++.+. -...||. .=||-|.|- .| -.+..+.+.....+.++..
T Consensus 104 p~wp--~~l~~l~~~~~~~~g~~~n~~LvN~Y~~G~-d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~ 172 (238)
T 2iuw_A 104 PHWH--PVLRTLKNRIEENTGHTFNSLLCNLYRNEK-DSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKK 172 (238)
T ss_dssp SSCC--HHHHHHHHHHHHHHSCCCCEEEEEEECSTT-CCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEEC
T ss_pred CCCC--HHHHHHHHHHHHHhCCCCCEEEEEEECCCC-CceeCCcCChhhcCCCCcEEEEECCCCEEEEEecc
Confidence 3687 4556666777777787776442 2556763 245667774 44 5666667766666666654
No 30
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=24.47 E-value=2.2e+02 Score=21.22 Aligned_cols=63 Identities=13% Similarity=0.286 Sum_probs=40.9
Q ss_pred CCCCC-hHHHHHHHHHHHHHhC---CCCcce-EEEEccceeecccccccc----CCceeEEeeeccceEEEEEE
Q 031299 4 FSWPT-EDELKEMRNKVSEMSG---RDAEEV-RVVVSPYRICPLGAHIDH----QGGTVSAMTINKGILLGFVP 68 (162)
Q Consensus 4 ~~~~~-~~~~~~~~~~f~~~fg---~~p~~~-~~v~APGRv~L~GEH~Dy----~gg~vl~~Ai~~~~~v~~~~ 68 (162)
-.||+ ++.+.++++...+.-| ..|+.+ +-...||. =||-|.|- .+.+++.+.+.....+.++.
T Consensus 77 ~pw~~~P~~L~~l~~~~~~~~g~~~~~pn~~LvN~Y~~G~--~i~~H~D~~e~~~~~pI~svSLG~~~~f~f~~ 148 (211)
T 3i3q_A 77 KPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGA--KLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGG 148 (211)
T ss_dssp SBCCCCCHHHHHHHHHHHHHTTCTTCCCCEEEEEEECTTC--CEEEECCCCCSCTTSCEEEEEEESCEEEEECC
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCcCCCEEEEEEEcCCC--CcccccCCCccccCCCEEEEECCCCeEEEEec
Confidence 36886 3567777776665443 245543 23578888 78999993 45667777776666666664
No 31
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=23.45 E-value=2.2e+02 Score=20.91 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCcce-EEEEccceeeccccccccC-----CceeEEeeeccceEEEEEEc
Q 031299 5 SWPTEDELKEMRNKVSEMSGRDAEEV-RVVVSPYRICPLGAHIDHQ-----GGTVSAMTINKGILLGFVPS 69 (162)
Q Consensus 5 ~~~~~~~~~~~~~~f~~~fg~~p~~~-~~v~APGRv~L~GEH~Dy~-----gg~vl~~Ai~~~~~v~~~~~ 69 (162)
+|| +.+.++++.-++.+|..++.+ +-...||. .=||-|.|-. +.+++.+.+.....+.++..
T Consensus 79 pwp--~~L~~l~~~~~~~~g~~~n~~LvN~Y~~G~-d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~ 146 (204)
T 3s57_A 79 PWI--PVLERIRDHVSGVTGQTFNFVLINRYKDGS-DHICEHRDDERELAPGSPIASVSFGASRDFVFRHK 146 (204)
T ss_dssp ECC--HHHHHHHHHHHHHHCCCCSEEEEEEESSTT-CCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEG
T ss_pred CCC--HHHHHHHHHHHHHhCCCCceeEEEEECCCC-CcccceecChhhccCCCcEEEEECCCceEEEEEEc
Confidence 465 466667777777788888744 23567775 3467788863 55677777776677777754
Done!