RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031299
(162 letters)
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 103 bits (259), Expect = 6e-27
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 9 EDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVP 68
L + K +E+ G D +EV SP RI +G H D+ GG V +I G
Sbjct: 28 STVLSALTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARL 86
Query: 69 SGDTEVVLRSGQFD--GEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGA 126
D +V L S F G + F +DE+++ + W NY +G
Sbjct: 87 REDKKVKLYSENFPKLGVIEFDLDEVEKK-------------------DGELWSNYVKGM 127
Query: 127 LYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161
+ L+ G + +G I + +SGLSSSA+
Sbjct: 128 IVMLKGAGYEIDKGFELLIK-GEIPTASGLSSSAS 161
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 98.9 bits (247), Expect = 1e-25
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDE 91
V SP R+ +G H D+ G V M IN + EV+L S F E +F +++
Sbjct: 3 KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKI--EAEKHGEVILYSEHFGEERKFSLND 60
Query: 92 IQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNL 151
+++E W +Y +G + L+ + GI G + +
Sbjct: 61 ---------------------LRKENSWIDYVKGIFWVLKESDYEVG-GIKGRVS-GNLP 97
Query: 152 DSSGLSSSAA 161
+GLSSSA+
Sbjct: 98 LGAGLSSSAS 107
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 95.5 bits (238), Expect = 4e-24
Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 19/158 (12%)
Query: 5 SWPTEDEL-KEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGIL 63
P EL E R E G AE V +P R+ +G H D+ G V M + +
Sbjct: 12 RQPQVAELLAEARRAFREEFG--AEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTV 69
Query: 64 LGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYA 123
L P D V L + + R+ + + + +W NY
Sbjct: 70 LVGSPRKDGLVSLLTTSEGADEPQRLQ------------FPLPTAQRSLEPGTPRWANYV 117
Query: 124 RGALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAA 161
+G + + G + S GLSSSA+
Sbjct: 118 KGVIQYYPAAP---LPGFSAVVV-SSVPLGGGLSSSAS 151
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 67.1 bits (163), Expect = 6e-14
Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 23/164 (14%)
Query: 8 TEDELKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFV 67
E + + + + + + SP R+ +G HID+ +V + I+ +L
Sbjct: 19 FEQKHLAVVDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVK 76
Query: 68 PSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGAL 127
+ + D + R ++ S A +W NY + L
Sbjct: 77 ILDEKNPSITLTNADPKFAQRKFDLPLD-----------GSYMAIDPSVSEWSNYFKCGL 125
Query: 128 YALQSRG---------NILTEGIIGYICGSDNLDSSGLSSSAAC 162
+ S N G + D GLSS+ C
Sbjct: 126 HVAHSYLKKIAPERFNNTPLVGAQIFCQS-DIPTGGGLSSAFTC 168
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 63.4 bits (154), Expect = 1e-12
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 28/169 (16%)
Query: 1 MGEFSWPTEDELKEMRNKVSEMSGR-----DAEEVRVVVSPYRICPLGAHIDHQGGTVSA 55
M S T ++ ++ + V +P R+ +G HID+ G +V
Sbjct: 21 MATESPATRRVQVAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLP 80
Query: 56 MTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFRIDEIQQPTNSVKKHHAVYASDSAKIK 114
M + + +L+ P + L + + + IQ K
Sbjct: 81 MAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQID------------------K 122
Query: 115 EECKWGNYARGALYALQSR-GNILTEGIIGYICGSDNL-DSSGLSSSAA 161
+ W NY L +Q G G+ + G N+ SSGLSSS+A
Sbjct: 123 TKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDG--NIPPSSGLSSSSA 169
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 52.7 bits (127), Expect = 5e-09
Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDE 91
++ +P ++ G H G +M I+ + + + E++L + + ++E
Sbjct: 7 IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66
Query: 92 IQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNL 151
I+ + + L G I +
Sbjct: 67 IKNINPNNFG----------------DFKYCLCAIKNTLDYLNIEPKTGFKINISS--KI 108
Query: 152 D-SSGLSSSAAC 162
S GL SSA+
Sbjct: 109 PISCGLGSSASI 120
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 45.7 bits (108), Expect = 1e-06
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 28/133 (21%)
Query: 35 SPYRICPLGAHIDHQ------GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFR 88
+P R+ G D GG + TIN + + + + +
Sbjct: 8 APLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSY- 66
Query: 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGS 148
S E + +G + + + +
Sbjct: 67 --------------------LSMSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTY-N 105
Query: 149 DNLDSSGLSSSAA 161
D SGL +S+
Sbjct: 106 DAPAGSGLGTSST 118
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 42.9 bits (100), Expect = 1e-05
Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 29 EVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFR 88
EV +V +P ++ G H G A+ +N L P + +V L + +
Sbjct: 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWD 63
Query: 89 IDEIQQPTNSVKKHHAVYASDSAKIKE--------ECKWGNYARGA-----LYALQSRGN 135
+ +Q + V A ++++ GN LY R
Sbjct: 64 VATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ 123
Query: 136 ILTEGIIGYICGSDNLDSSGLSSSAAC 162
+ + S+ +GL SSAA
Sbjct: 124 RTLPSLDIMV-WSELPPGAGLGSSAAY 149
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 39.7 bits (93), Expect = 2e-04
Identities = 24/132 (18%), Positives = 38/132 (28%), Gaps = 33/132 (25%)
Query: 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDE 91
S +I +G H G A+ N G +V++ + + + D
Sbjct: 8 YGESTGKIILIGEHAVTFGEPAIAVPFNA---------GKIKVLIEALESGNYSSIKSDV 58
Query: 92 IQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNL 151
++ + + NI TE + I NL
Sbjct: 59 YDGMLYD--------------------APDHLKSLVNRFVELNNI-TEPLAVTIQT--NL 95
Query: 152 D-SSGLSSSAAC 162
S GL SSAA
Sbjct: 96 PPSRGLGSSAAV 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.002
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 18/42 (42%)
Query: 91 EIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQS 132
+++ S+K +YA DSA AL A+++
Sbjct: 21 ALKKLQASLK----LYADDSAP-------------AL-AIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.012
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 41/153 (26%)
Query: 8 TEDELKEMRNK--VSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTV-----SAMTINK 60
+D K + +K + + R+ + Q V + IN
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGT----LRL--FWTLLSKQEEMVQKFVEEVLRINY 91
Query: 61 GILLGFV------PSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIK 114
L+ + PS T + + E R R+ Q K++ K++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYI-------EQRDRLYNDNQV---FAKYNVSRLQPYLKLR 141
Query: 115 EECKWGNYARGALYALQSRGNILTEGIIGYICG 147
+ AL L+ N+L +G++G G
Sbjct: 142 Q----------ALLELRPAKNVLIDGVLG--SG 162
Score = 29.8 bits (66), Expect = 0.37
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 1 MGEFSWP-TEDELKEMRNKVSEMSGRD-AEEVRVVVSPYRICPLGAHI 46
+ S T DE+K + K + +D EV + +P R+ + I
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESI 337
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 30.4 bits (68), Expect = 0.27
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 18/134 (13%)
Query: 31 RVVVS-PYRICPLGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFR 88
++ V P ++ G + G T +N+ I L S E+ + ++ V +
Sbjct: 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIP--HYENPVSWP 63
Query: 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGS 148
I +P + +++ I + ++ +
Sbjct: 64 IGGELKPDGEHWT----FTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAK----- 114
Query: 149 DNLDSSGLSSSAAC 162
GL SSAA
Sbjct: 115 -----YGLGSSAAA 123
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 29.2 bits (66), Expect = 0.52
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 64 LGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYA---SDSAKIKEECKW 119
LG +P G TE + + + D E +I++ T +H V A + I E+ ++
Sbjct: 36 LGMIPKGVTERIRNNAKIDVE---LFKKIEEKT-----NHDVVAFVEGIGSMIGEDSRF 86
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 28.9 bits (65), Expect = 0.62
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 31/138 (22%)
Query: 27 AEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVR 86
++ + ++ G H G I++ + + + G +V
Sbjct: 10 SKTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYT--------ECRLEINPGVPGLQVD 61
Query: 87 FRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRG-NILTEGIIGYI 145
+ I K + L ++ +G+ +I
Sbjct: 62 DQRPAIPGYIAQ-------------------KRDEQIKAHQLVLDHLKVDLSGDGLKMFI 102
Query: 146 CGSDNLD-SSGLSSSAAC 162
G L SSG+ +SA+
Sbjct: 103 GG--PLVPSSGIGASASD 118
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 28.8 bits (65), Expect = 0.69
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 64 LGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYA-----SDSAKIKEECK 118
LG +P D + + FD + RI EI++ T H V A S++ + EE K
Sbjct: 46 LGDIPKEDVKKIREHASFDID---RIYEIEKET-----RHDVVAFTRAVSETPALGEERK 97
Query: 119 W 119
W
Sbjct: 98 W 98
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 28.1 bits (63), Expect = 1.1
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 44/136 (32%)
Query: 28 EEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRF 87
++V V + +I +G H G ++ + + EV + + R
Sbjct: 3 KKVGVGQAHSKIILIGEHAVVYGYPAISLPLL-----------EVEVTCKVVPAESPWRL 51
Query: 88 RIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICG 147
+ + A+YA NI I I
Sbjct: 52 YEE------------------------------DTLSMAVYASLEYLNITEACIRCEIDS 81
Query: 148 SDNLD-SSGLSSSAAC 162
+ G+ SSAA
Sbjct: 82 --AIPEKRGMGSSAAI 95
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.9 bits (63), Expect = 1.6
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 102 HHAVYASDSAKIKEECKW 119
V+ +D KI W
Sbjct: 302 DQRVFVADIKKITNAIDW 319
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate
complex, periplasm, transesterification, phenol,
bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Length = 571
Score = 26.6 bits (57), Expect = 5.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 32 VVVSPYRICPLGAHIDHQGGTVSAMTI 58
V+V PY PL A +D +S + +
Sbjct: 15 VIVDPYGNAPLTALVDLDSHVISDVKV 41
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 26.1 bits (58), Expect = 5.9
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 37 YRICPLGAHIDHQGGTVSAMT-INKGILLGFVPSGDTEVVLRSGQFDGEV 85
+ + ++ +G M I +GI+ + G L G + GE+
Sbjct: 96 FEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEI 145
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle;
rigor-like, squid, contractIle protein; 2.60A
{Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B*
3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 25.2 bits (56), Expect = 9.6
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 14/38 (36%)
Query: 7 PTEDELKEMRNKVSE--------------MSGRDAEEV 30
P +DEL M + +SG D E+
Sbjct: 49 PPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDA 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.392
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,502,191
Number of extensions: 144321
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 26
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)