RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031299
(162 letters)
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 66.0 bits (160), Expect = 1e-14
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 12 LKEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD 71
L + K +E+ G D +EV SP RI +G H D+ GG V +I G D
Sbjct: 3 LSALTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLRED 61
Query: 72 TEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQ 131
+V L S F D D + K+ W NY +G + L+
Sbjct: 62 KKVKLYSENFPKLGVIEFDL-----------------DEVEKKDGELWSNYVKGMIVMLK 104
Query: 132 SRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162
G + +G + + +SGLSSSA+
Sbjct: 105 GAGYEIDKGFE-LLIKGEIPTASGLSSSASL 134
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 61.8 bits (149), Expect = 7e-13
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 12/145 (8%)
Query: 29 EVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFR 88
EV +V +P ++ G H G A+ +N L P + +V L + +
Sbjct: 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWD 63
Query: 89 IDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICG- 147
+ +Q + V A ++++ K R + +
Sbjct: 64 VATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ 123
Query: 148 -----------SDNLDSSGLSSSAA 161
S+ +GL SSAA
Sbjct: 124 RTLPSLDIMVWSELPPGAGLGSSAA 148
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 59.1 bits (142), Expect = 6e-12
Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 19/158 (12%)
Query: 6 WPTEDEL-KEMRNKVSEMSGRDAEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILL 64
P EL E R E G + E V +P R+ +G H D+ G V M + +L
Sbjct: 5 QPQVAELLAEARRAFREEFGAEPELA--VSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 62
Query: 65 GFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHHAVYASDSAKIKEECKWGNYAR 124
P D V L + + R+ + + + +W NY +
Sbjct: 63 VGSPRKDGLVSLLTTSEGADEPQRL------------QFPLPTAQRSLEPGTPRWANYVK 110
Query: 125 GALYALQSRGNILTEGIIGYICGSDNLDSSGLSSSAAC 162
G + + + S GLSSSA+
Sbjct: 111 GVIQYYPAAPLPG----FSAVVVSSVPLGGGLSSSASL 144
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 50.6 bits (120), Expect = 5e-09
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 32 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDE 91
++ +P ++ G H G +M I+ + + + E++L + + ++E
Sbjct: 7 IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66
Query: 92 IQQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYALQSRGNILTEGIIGYICGSDNL 151
I+ Y A+ NI + S
Sbjct: 67 IKNINP-----------------NNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIP 109
Query: 152 DSSGLSSSAAC 162
S GL SSA+
Sbjct: 110 ISCGLGSSASI 120
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 47.2 bits (111), Expect = 9e-08
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 33 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEI 92
V SP R+ +G H D+ G V M I+ ++ +V L S F+ E F +D +
Sbjct: 2 VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEK--YDKVQLYSEHFNEEKTFTLDNL 59
Query: 93 QQPTNSVKKHHAVYASDSAKIKEECKWGNYARGALYA 129
+ + + V + + G L
Sbjct: 60 TKEGSWIDYVKGVLWVLIQEGYKIGGLKGKITGDLPL 96
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 26.4 bits (57), Expect = 1.4
Identities = 8/97 (8%), Positives = 21/97 (21%), Gaps = 4/97 (4%)
Query: 25 RDAEEVRVVV---SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQF 81
E + V + + G +P + +
Sbjct: 121 LRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTAFY 180
Query: 82 DGEVRFRIDEIQQP-TNSVKKHHAVYASDSAKIKEEC 117
G + ++ + KH + A ++
Sbjct: 181 RGCMTLEVNRRLLDLDEAAYKHSDITAHSCPPVEPAA 217
>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 212
Score = 25.0 bits (54), Expect = 4.7
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 44 AHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKHH 103
+ D Q T+ A I G+ +GF + E V + E+ + + Q + +K
Sbjct: 54 SKADQQYSTLLAQEIANGVTIGFRMVNEKERVC-----NVEILPLLTSMAQNLDRIKARF 108
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 23.6 bits (51), Expect = 6.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 2 GEFSWPTEDELKEMRNKVSEMSGRDAEEVRVVVSPYRIC 40
G+ + +D L E+ +S + R EVR V+ R+
Sbjct: 29 GDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLT 67
>d1uaia_ b.29.1.18 (A:) Polyguluronate lyase {Corynebacterium sp.
ALY-1 [TaxId: 101519]}
Length = 223
Score = 24.1 bits (52), Expect = 8.3
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 46 IDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFRIDEIQQPTNSVKKH--- 102
+G + L V G V G+++ + + Q T S
Sbjct: 135 YITKGDDTHHKLVTSDYKLNTVFEGKFVVS------GGKIKVYYNGVLQTTISHTSSGNY 188
Query: 103 -HA-VYASDSAKIKEECKWGNYARGALYALQ 131
A Y + C NY + +LY LQ
Sbjct: 189 FKAGAYTQANCSNSSPCSSSNYGQVSLYKLQ 219
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain
2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 94
Score = 23.3 bits (50), Expect = 9.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 51 GTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEV 85
G V I G+++ F P+G T V ++
Sbjct: 23 GRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQL 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.392
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 596,972
Number of extensions: 26318
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 12
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.1 bits)