BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031302
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
           Mg-Adp From Pyrococcus Horikoshii Ot3
          Length = 243

 Score = 28.1 bits (61), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLN 156
           P    +V++ L G + F+L DC AG    A ++ L+
Sbjct: 98  PRKLPEVIKSLKGKYDFILIDCPAGLQLRAXSAXLS 133


>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
           Division Atpase Mind
 pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
           Division Atpase Mind
          Length = 237

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLN 156
           P    +V++ L   F F+L DC AG    A+++ L+
Sbjct: 98  PRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSAMLS 133


>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
          Length = 544

 Score = 27.3 bits (59), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGS 86
           P ENPNSV+      L NV C   G 
Sbjct: 430 PLENPNSVNYYTLIDLQNVTCRLYGE 455


>pdb|3F1B|A Chain A, The Crystal Structure Of A Tetr-Like Transcriptional
           Regulator From Rhodococcus Sp. Rha1
          Length = 203

 Score = 26.2 bits (56), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 104 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL 162
            E +  +EA     D G  P  Q+ R L+G  GFV    K+  +    A    +FV S+
Sbjct: 68  REGLRFVEALAPAGDPGLSPREQLRRALEGFLGFVGKHRKSWXVLYRQAXGQQAFVGSV 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,769,996
Number of Sequences: 62578
Number of extensions: 176703
Number of successful extensions: 290
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)