BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031302
         (162 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1
          Length = 149

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 4/151 (2%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLI-SQSSNAFSINFGNAAALAY 59
           MLA+F + +  PP EL  P +    ++ K  EEI   F    Q S  + +  GN  A ++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 60  VPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDR 119
               N N +  R    + +V+C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR
Sbjct: 61  ---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDR 117

Query: 120 GPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150
            PYP  QV+++L+G F F+L+D KA T+F A
Sbjct: 118 APYPPDQVIKELEGKFAFILFDSKASTLFLA 148


>sp|Q9FHE1|GSTT3_ARATH Glutathione S-transferase T3 OS=Arabidopsis thaliana GN=GSTT3 PE=2
           SV=1
          Length = 590

 Score = 34.7 bits (78), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 51  FGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMG----SLNNLSSLNKQ-------YGL 99
           F N+A+LA +P   P+   QRW   L++  C F+G    +LN  SS   +       Y +
Sbjct: 311 FNNSASLANLPKREPSHCKQRW-SKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQV 369

Query: 100 SKGSNEAMFVIE-AYRTLR 117
              + ++ F +E A+R LR
Sbjct: 370 YTNNYKSNFTLEHAWRELR 388


>sp|B0RDZ5|ISPG_CLAMS 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clavibacter
           michiganensis subsp. sepedonicus (strain ATCC 33113 /
           JCM 9667) GN=ispG PE=3 SV=1
          Length = 381

 Score = 30.4 bits (67), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 97  YGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLD----------GSFGFVLYDCKAGT 146
           + +S   N+ + +++AYR L +RG +P H  + +             +FG +L +    T
Sbjct: 186 FKISVKHNDPVIMVKAYRLLAERGDWPLHLGVTEAGPAFQGTIKSATAFGILLSEGIGDT 245

Query: 147 IFAALASP 154
           I  +L++P
Sbjct: 246 IRVSLSAP 253


>sp|A5CT01|ISPG_CLAM3 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clavibacter
           michiganensis subsp. michiganensis (strain NCPPB 382)
           GN=ispG PE=3 SV=1
          Length = 381

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 97  YGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLD----------GSFGFVLYDCKAGT 146
           + +S   N+ + +++AYR L +RG +P H  + +             +FG +L +    T
Sbjct: 186 FKISVKHNDPVIMVKAYRLLAERGDWPLHLGVTEAGPAFQGTIKSATAFGILLSEGIGDT 245

Query: 147 IFAALASP 154
           I  +L++P
Sbjct: 246 IRVSLSAP 253


>sp|Q9Z7S2|RL18_CHLPN 50S ribosomal protein L18 OS=Chlamydia pneumoniae GN=rplR PE=3 SV=1
          Length = 123

 Score = 30.0 bits (66), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 11/56 (19%)

Query: 84  MGSLNNLSSLNKQYGLSKGSNEAMFV-----------IEAYRTLRDRGPYPAHQVL 128
           + S++ LS LNK  GL+K + E   V           ++  R + DRGP+  H ++
Sbjct: 54  LASVSTLSKLNKSQGLTKKNQEVAKVLGTQIAELGKNLQLDRVVFDRGPFKYHGIV 109


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,241,221
Number of Sequences: 539616
Number of extensions: 2262544
Number of successful extensions: 5054
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5052
Number of HSP's gapped (non-prelim): 8
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)