Query 031302
Match_columns 162
No_of_seqs 194 out of 449
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 12:11:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12481 DUF3700: Aluminium in 100.0 1.6E-61 3.5E-66 404.1 16.2 157 2-160 1-158 (228)
2 cd01910 Wali7 This domain is p 100.0 2E-57 4.2E-62 379.7 17.5 154 2-160 1-154 (224)
3 COG0367 AsnB Asparagine syntha 99.9 2E-26 4.3E-31 211.4 11.1 101 49-160 43-147 (542)
4 cd01909 betaLS_CarA_N Glutamin 99.9 5.8E-26 1.2E-30 186.5 11.1 80 73-160 46-129 (199)
5 PTZ00077 asparagine synthetase 99.9 7.8E-26 1.7E-30 209.2 11.5 101 50-160 50-154 (586)
6 TIGR01536 asn_synth_AEB aspara 99.9 1.8E-25 3.9E-30 198.5 12.7 101 49-160 42-146 (467)
7 PRK09431 asnB asparagine synth 99.9 1.3E-25 2.7E-30 206.4 12.0 100 50-160 45-147 (554)
8 PLN02549 asparagine synthase ( 99.9 7.7E-25 1.7E-29 202.5 11.8 100 50-160 45-146 (578)
9 TIGR03104 trio_amidotrans aspa 99.9 9.7E-25 2.1E-29 200.9 12.0 102 49-160 43-148 (589)
10 TIGR03108 eps_aminotran_1 exos 99.9 4.6E-24 1E-28 196.1 12.3 101 49-160 44-148 (628)
11 PF13537 GATase_7: Glutamine a 99.9 1.5E-24 3.3E-29 162.8 7.3 99 55-160 2-105 (125)
12 cd03766 Gn_AT_II_novel Gn_AT_I 99.9 2.3E-23 4.9E-28 167.0 10.4 101 49-160 48-148 (181)
13 cd00712 AsnB Glutamine amidotr 99.9 2.5E-22 5.5E-27 162.5 11.9 99 51-160 44-146 (220)
14 cd00714 GFAT Glutamine amidotr 99.8 2.9E-19 6.2E-24 145.7 11.0 108 48-160 65-180 (215)
15 PF13522 GATase_6: Glutamine a 99.8 1.3E-18 2.9E-23 132.6 11.3 103 49-160 14-120 (133)
16 PRK08525 amidophosphoribosyltr 99.8 2E-18 4.3E-23 155.5 11.8 109 48-160 66-181 (445)
17 KOG0571 Asparagine synthase (g 99.8 7.9E-19 1.7E-23 159.7 6.6 101 50-160 44-146 (543)
18 cd00352 Gn_AT_II Glutamine ami 99.7 3.9E-17 8.5E-22 128.4 11.5 111 48-160 69-185 (220)
19 PRK07631 amidophosphoribosyltr 99.7 3.9E-17 8.5E-22 148.9 11.0 108 49-160 77-191 (475)
20 PRK09123 amidophosphoribosyltr 99.7 3.9E-17 8.4E-22 148.8 10.1 107 49-160 88-202 (479)
21 PRK06388 amidophosphoribosyltr 99.7 8.4E-17 1.8E-21 146.6 12.1 109 48-160 83-199 (474)
22 cd01907 GlxB Glutamine amidotr 99.7 9.7E-17 2.1E-21 134.2 11.5 122 30-160 62-210 (249)
23 PRK00331 glucosamine--fructose 99.7 5.4E-17 1.2E-21 148.8 10.4 108 48-160 66-181 (604)
24 TIGR01135 glmS glucosamine--fr 99.7 8.3E-17 1.8E-21 147.6 10.5 108 48-160 65-180 (607)
25 cd00715 GPATase_N Glutamine am 99.7 1.8E-16 3.8E-21 131.6 11.5 109 48-160 65-181 (252)
26 PRK07349 amidophosphoribosyltr 99.7 1.5E-16 3.2E-21 145.9 11.5 108 49-160 100-216 (500)
27 PRK08341 amidophosphoribosyltr 99.7 2.3E-16 5E-21 142.6 11.5 107 48-160 67-182 (442)
28 PRK07272 amidophosphoribosyltr 99.7 1.9E-16 4E-21 144.8 10.9 108 48-160 77-192 (484)
29 PRK07847 amidophosphoribosyltr 99.7 2.1E-16 4.7E-21 145.2 10.1 108 49-160 90-211 (510)
30 PRK06781 amidophosphoribosyltr 99.6 9.6E-16 2.1E-20 139.5 11.8 106 49-160 77-191 (471)
31 PLN02440 amidophosphoribosyltr 99.6 1.1E-15 2.4E-20 139.0 10.7 104 49-160 67-181 (479)
32 PTZ00295 glucosamine-fructose- 99.6 1E-15 2.2E-20 142.1 10.2 108 48-160 96-211 (640)
33 PRK05793 amidophosphoribosyltr 99.6 1.7E-15 3.7E-20 137.5 10.1 108 49-160 82-196 (469)
34 PTZ00394 glucosamine-fructose- 99.6 4.7E-15 1E-19 139.4 11.2 104 48-153 98-211 (670)
35 PRK09246 amidophosphoribosyltr 99.6 7.4E-15 1.6E-19 134.2 10.3 108 50-160 68-191 (501)
36 TIGR01134 purF amidophosphorib 99.6 2.5E-14 5.3E-19 128.9 11.5 108 49-160 67-182 (442)
37 PLN02981 glucosamine:fructose- 99.5 5E-14 1.1E-18 132.5 10.3 102 49-152 88-204 (680)
38 COG0449 GlmS Glucosamine 6-pho 99.1 2.5E-10 5.5E-15 107.2 9.0 117 30-152 51-173 (597)
39 COG0034 PurF Glutamine phospho 98.9 6.1E-09 1.3E-13 95.6 9.7 108 48-160 72-188 (470)
40 KOG0573 Asparagine synthase [A 98.5 2.4E-07 5.1E-12 85.5 6.6 77 74-159 66-142 (520)
41 cd00713 GltS Glutamine amidotr 98.4 2.5E-06 5.5E-11 77.5 11.6 79 80-160 226-353 (413)
42 KOG0572 Glutamine phosphoribos 98.3 3.2E-06 7E-11 77.2 9.9 107 48-159 69-190 (474)
43 cd01908 YafJ Glutamine amidotr 98.3 3.6E-06 7.8E-11 70.3 7.9 82 69-154 100-199 (257)
44 PF00310 GATase_2: Glutamine a 98.0 8.1E-05 1.7E-09 66.4 10.8 118 29-159 176-345 (361)
45 KOG1268 Glucosamine 6-phosphat 97.9 1.2E-05 2.6E-10 75.8 3.7 85 69-153 100-195 (670)
46 TIGR03442 conserved hypothetic 97.5 0.00041 9E-09 58.7 7.2 82 69-154 103-206 (251)
47 PF09147 DUF1933: Domain of un 96.0 0.036 7.8E-07 46.5 7.6 80 70-159 42-125 (201)
48 PRK11750 gltB glutamate syntha 88.7 4.3 9.4E-05 43.0 10.8 121 29-159 193-362 (1485)
49 PF13230 GATase_4: Glutamine a 87.3 1.5 3.3E-05 37.6 5.6 73 77-152 101-187 (271)
50 COG0067 GltB Glutamate synthas 62.4 17 0.00037 33.3 5.3 77 29-113 183-264 (371)
51 COG1686 DacC D-alanyl-D-alanin 38.2 24 0.00053 32.1 2.3 29 134-162 38-66 (389)
52 TIGR03823 FliZ flagellar regul 36.8 26 0.00057 29.0 2.1 20 75-94 31-50 (168)
53 PRK11582 flagella biosynthesis 36.4 27 0.00058 28.9 2.1 20 75-94 31-50 (169)
54 PF14871 GHL6: Hypothetical gl 33.7 1E+02 0.0022 23.8 4.9 40 31-72 2-41 (132)
55 COG1995 PdxA Pyridoxal phospha 31.5 74 0.0016 29.0 4.2 39 102-140 220-266 (332)
56 PF05357 Phage_Coat_A: Phage C 29.9 34 0.00075 24.1 1.5 21 70-90 36-56 (63)
57 TIGR03477 DMSO_red_II_gam DMSO 28.8 44 0.00096 28.2 2.2 20 134-159 177-196 (205)
58 smart00582 RPR domain present 27.6 49 0.0011 24.0 2.1 26 107-133 96-121 (121)
59 PRK06764 hypothetical protein; 26.9 54 0.0012 24.9 2.2 19 71-89 78-96 (105)
60 PF04566 RNA_pol_Rpb2_4: RNA p 25.4 2.2E+02 0.0048 19.4 4.9 40 104-153 12-51 (63)
61 PRK03371 pdxA 4-hydroxythreoni 25.3 65 0.0014 29.0 2.8 37 102-138 220-262 (326)
62 cd08351 ChaP_like ChaP, an enz 24.4 1.1E+02 0.0024 21.5 3.4 13 145-157 103-115 (123)
63 PF00173 Cyt-b5: Cytochrome b5 23.5 48 0.001 21.9 1.3 22 75-96 12-33 (76)
64 PF10611 DUF2469: Protein of u 22.9 1.6E+02 0.0035 22.5 4.0 32 105-150 10-41 (101)
65 PRK01909 pdxA 4-hydroxythreoni 22.1 81 0.0018 28.4 2.8 36 102-137 217-258 (329)
66 KOG0537 Cytochrome b5 [Energy 21.8 64 0.0014 24.9 1.8 23 75-97 17-39 (124)
67 COG4892 Predicted heme/steroid 21.0 69 0.0015 23.5 1.7 17 76-92 16-32 (81)
68 KOG0876 Manganese superoxide d 20.7 2.2E+02 0.0047 24.8 4.9 71 80-154 92-173 (234)
69 PF14504 CAP_assoc_N: CAP-asso 20.2 1.3E+02 0.0028 23.5 3.2 26 126-151 102-127 (141)
70 PRK05312 pdxA 4-hydroxythreoni 20.2 95 0.0021 28.1 2.8 34 102-135 226-265 (336)
71 TIGR00557 pdxA 4-hydroxythreon 20.1 1E+02 0.0023 27.5 3.0 35 102-136 214-254 (320)
No 1
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=1.6e-61 Score=404.14 Aligned_cols=157 Identities=59% Similarity=1.024 Sum_probs=151.7
Q ss_pred eeeecCCCCCCCcCCCCCCCC-CCCCCCCChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEE
Q 031302 2 LAIFNKGLVNPPQELHSPASL-SSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVY 80 (162)
Q Consensus 2 LavF~k~va~~PeeL~sp~~~-~~~~~~~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~ 80 (162)
||||+|+||++||||+||++. .+++++|+++||+++|+++|| +||||+||++++|||||++|+ +++||+|++.|||+
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p-~a~s~~~g~~~~lAys~~~~~-~l~pR~F~~~DdIf 78 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANP-NAFSMNFGDSAALAYSHSNQS-SLHPRLFAGVDDIF 78 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCC-CeEEEEcCCCEEEEEecCCCC-ccccccccccCCEE
Confidence 899999999999999999975 445679999999999999999 999999999999999999999 99999999999999
Q ss_pred EEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 81 CMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 81 ~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
|+|.|.|.|+..||||||++|++||+++||||||+||||||||+||||++|+|.|||||||+++++||+|||++|.-+++
T Consensus 79 CiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLy 158 (228)
T PF12481_consen 79 CIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLY 158 (228)
T ss_pred EEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987653
No 2
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=2e-57 Score=379.73 Aligned_cols=154 Identities=47% Similarity=0.808 Sum_probs=148.1
Q ss_pred eeeecCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEEE
Q 031302 2 LAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYC 81 (162)
Q Consensus 2 LavF~k~va~~PeeL~sp~~~~~~~~~~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~ 81 (162)
||||+|+||++||||+||++.+ .+++++||+++|+++|| ++|||+||+++.|||+|++|+ +++||+|+++++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~---~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~ 75 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRT---PAKTAEELLKRFLSANP-SAVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC 75 (224)
T ss_pred CcccccccCCCChHHcCCCccc---cCCCHHHHHHHHHhcCC-CcEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence 8999999999999999998742 36788899999999999 799999999999999999999 999999999999999
Q ss_pred EEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 82 MFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 82 vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+|||||||+.+||+|||+.+++||+|+||++|++||||||||+++++++|+|||||||||++++++|+|||++|+|+++
T Consensus 76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLY 154 (224)
T cd01910 76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLY 154 (224)
T ss_pred EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceE
Confidence 9999999999999999988999999999999999999999999999999999999999999999999999999999975
No 3
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.94 E-value=2e-26 Score=211.35 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=91.0
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA 124 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~ 124 (162)
+.||+ .+|+++...+. +||+....++++++||||||||.|||+++ |+ .+|++|+|||+++|++|+
T Consensus 43 ~~~gh-~rL~i~d~~~g---~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g------- 111 (542)
T COG0367 43 ALLGH-RRLSIVDLSGG---RQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWG------- 111 (542)
T ss_pred ceeee-eEEEEeccccC---CCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHHHH-------
Confidence 56777 89999998875 67888877789999999999999999998 45 599999999999999975
Q ss_pred hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+|+++|+|||||||||.++++||+|||++|+|+++
T Consensus 112 ~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLy 147 (542)
T COG0367 112 EDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLY 147 (542)
T ss_pred HHHHHHhccceEEEEEECCCCEEEEEecCCCccccE
Confidence 479999999999999999999999999999999975
No 4
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.93 E-value=5.8e-26 Score=186.48 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=72.3
Q ss_pred eecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEE
Q 031302 73 FCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIF 148 (162)
Q Consensus 73 f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lf 148 (162)
.+..+++++||||||||+.|||+++ |. .++.||+|||+++|++|| .+++++|+|||||+|||++ ++|+
T Consensus 46 ~~~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~ 117 (199)
T cd01909 46 VARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLT 117 (199)
T ss_pred EeeCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEE
Confidence 3555689999999999999999997 33 489999999999999864 4899999999999999999 9999
Q ss_pred EEecCCCccccc
Q 031302 149 AALASPLNSFVF 160 (162)
Q Consensus 149 lARD~~G~k~~~ 160 (162)
+||||+|+|++.
T Consensus 118 laRDr~GikPLY 129 (199)
T cd01909 118 LATDHAGSVPVY 129 (199)
T ss_pred EEECCCCCcCeE
Confidence 999999999975
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.93 E-value=7.8e-26 Score=209.22 Aligned_cols=101 Identities=24% Similarity=0.306 Sum_probs=89.3
Q ss_pred EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCchh
Q 031302 50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPAH 125 (162)
Q Consensus 50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~~ 125 (162)
.+|+ .+||++..... +||+++.+++++++|||||||+.+||++| |+ .+|.||+|||+++|++| |+ +
T Consensus 50 ~lgh-~RLsIvd~~~g---~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~---G~---~ 119 (586)
T PTZ00077 50 ILAH-ERLAIVDLSDG---KQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEY---GP---K 119 (586)
T ss_pred EEEe-ccceecCCCCC---CCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHh---CH---H
Confidence 4666 78999987433 68888988899999999999999999998 45 48999999999999985 52 3
Q ss_pred hhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 126 QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 126 ~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+++++|+|||||+|||++++++++|||++|+|+++
T Consensus 120 ~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLy 154 (586)
T PTZ00077 120 DFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLY 154 (586)
T ss_pred HHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeE
Confidence 79999999999999999999999999999999985
No 6
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.93 E-value=1.8e-25 Score=198.51 Aligned_cols=101 Identities=21% Similarity=0.335 Sum_probs=90.8
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhHhcCCCch
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GLS-KGSNEAMFVIEAYRTLRDRGPYPA 124 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-ks~sE~eviieaY~~~~drGpyp~ 124 (162)
+.||+ ++|++++.+.. .||+.+..+++++||||||||+.|||++| |+. ++.||+|+|+++|++||
T Consensus 42 ~~lgh-~rl~i~d~~~~---~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~~g------- 110 (467)
T TIGR01536 42 AILGH-RRLAIIDLSGG---AQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEWG------- 110 (467)
T ss_pred EEEEE-EEeEEeCCCCC---CCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHH-------
Confidence 56788 89999987443 78888888899999999999999999997 553 88999999999999875
Q ss_pred hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+++++|+|||||+|||++++++++|||++|+|+++
T Consensus 111 ~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLy 146 (467)
T TIGR01536 111 EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLY 146 (467)
T ss_pred HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeE
Confidence 589999999999999999999999999999999985
No 7
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.93 E-value=1.3e-25 Score=206.38 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=88.9
Q ss_pred EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC--C-CCCCchHHHHHHHHHHhHhcCCCchhh
Q 031302 50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG--L-SKGSNEAMFVIEAYRTLRDRGPYPAHQ 126 (162)
Q Consensus 50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G--~-~ks~sE~eviieaY~~~~drGpyp~~~ 126 (162)
.||+ .+||+++.... .||+++.+++++++|||||||+.|||+++. + .++.||+|||+++|++|| .+
T Consensus 45 ~lgh-~RLsIid~~~g---~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G-------~~ 113 (554)
T PRK09431 45 ILGH-ERLSIVDVNGG---AQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQEKG-------PD 113 (554)
T ss_pred EEEE-EEeeecCCCCC---CCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHHHHH-------HH
Confidence 4666 88999987433 688888889999999999999999999984 3 489999999999999865 47
Q ss_pred hhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 127 VLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 127 ~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
++++|+|||||||||.+++++++|||++|+|+++
T Consensus 114 ~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLy 147 (554)
T PRK09431 114 FLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLY 147 (554)
T ss_pred HHHhCCCceEEEEEECCCCEEEEEeCCCCCcceE
Confidence 9999999999999999999999999999999985
No 8
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.92 E-value=7.7e-25 Score=202.45 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=88.8
Q ss_pred EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC-C-CCCCchHHHHHHHHHHhHhcCCCchhhh
Q 031302 50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG-L-SKGSNEAMFVIEAYRTLRDRGPYPAHQV 127 (162)
Q Consensus 50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~-~ks~sE~eviieaY~~~~drGpyp~~~~ 127 (162)
.||+ .+|++..... -.||+++.+++++++|||||||+.+||++++ + .+|.||+|||+++|++|| .++
T Consensus 45 ~Lgh-~RLsI~d~~~---g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~G-------~~~ 113 (578)
T PLN02549 45 YLAH-ERLAIMDPES---GDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEHG-------EEF 113 (578)
T ss_pred EEEE-eeeeEeCCCC---CCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-------HHH
Confidence 4666 7888888633 3688888888999999999999999999985 3 589999999999999865 489
Q ss_pred hhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 128 LRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 128 l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+++|+|||||||||.+++++++|||++|+|+++
T Consensus 114 ~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLy 146 (578)
T PLN02549 114 VDMLDGMFSFVLLDTRDNSFIAARDHIGITPLY 146 (578)
T ss_pred HHhCCCceEEEEEECCCCEEEEEECCCCCCCeE
Confidence 999999999999999999999999999999985
No 9
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.92 E-value=9.7e-25 Score=200.89 Aligned_cols=102 Identities=15% Similarity=0.296 Sum_probs=89.9
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA 124 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~ 124 (162)
+.+|+ ++|++++.... -+||+.+..+++++||||||||+.|||+++ |+ .++.||+|||+++|++||
T Consensus 43 ~~lgh-~rl~i~~~~~~--~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G------- 112 (589)
T TIGR03104 43 VALGH-RRLKIIDLSEA--SQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAWG------- 112 (589)
T ss_pred EEEEE-EeeEecCCCcC--CCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH-------
Confidence 56777 88999876432 367788888899999999999999999997 55 488999999999999875
Q ss_pred hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+++++|+|||||+|||..++++++||||+|+|+++
T Consensus 113 ~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLy 148 (589)
T TIGR03104 113 RDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLY 148 (589)
T ss_pred HHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeE
Confidence 589999999999999999999999999999999975
No 10
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.91 E-value=4.6e-24 Score=196.12 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=89.6
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhHhcCCCch
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GLS-KGSNEAMFVIEAYRTLRDRGPYPA 124 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-ks~sE~eviieaY~~~~drGpyp~ 124 (162)
+.+|+ ++|++++.... .||+.+..++++|||||||||+.|||+++ |+. ++.||+|+|+++|++||
T Consensus 44 ~~lgh-~rl~i~d~~~~---~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g------- 112 (628)
T TIGR03108 44 IGLGH-RRLSIIDLSGG---QQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWG------- 112 (628)
T ss_pred EEEEE-EeeeecCCCCC---CCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHHHH-------
Confidence 56777 88999976433 67788888899999999999999999997 553 88999999999999975
Q ss_pred hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+++++|+|||||+|||+.++++++|||++|+|+++
T Consensus 113 ~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLy 148 (628)
T TIGR03108 113 EACVERFRGMFAFALWDRNQETLFLARDRLGIKPLY 148 (628)
T ss_pred HHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceE
Confidence 589999999999999999999999999999999975
No 11
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.91 E-value=1.5e-24 Score=162.79 Aligned_cols=99 Identities=19% Similarity=0.346 Sum_probs=57.0
Q ss_pred eeEEeeCCCCCCCCCccee-ecCCcEEEEEcceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhHhcCCCchhhhhh
Q 031302 55 AALAYVPPENPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQYG---L-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLR 129 (162)
Q Consensus 55 ~~lAys~~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~G---~-~ks~sE~eviieaY~~~~drGpyp~~~~l~ 129 (162)
.+|+...+... .||+. +..++++++|||||||+.||++++. . .++.+|+|+++++|+++.+|| .++++
T Consensus 2 ~rl~~~~~~~~---~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~ 74 (125)
T PF13537_consen 2 VRLSTDDSDEG---AQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLK 74 (125)
T ss_dssp --------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGG
T ss_pred ccccccccccc---ccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHH
Confidence 35555444433 56666 6778999999999999999999983 3 378999999999999866667 58999
Q ss_pred ccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 130 DLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 130 ~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+|+|+|||++||+++++|++|||++|+|+++
T Consensus 75 ~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLy 105 (125)
T PF13537_consen 75 RLDGPFAFVIWDKDKKRLFLARDRFGIRPLY 105 (125)
T ss_dssp T--EEEEEEEEETTE--EEEEE-TT--S--E
T ss_pred hCCceEEEEEEeCCCcEEEEEECCCCCCCeE
Confidence 9999999999999999999999999999975
No 12
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.90 E-value=2.3e-23 Score=167.04 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=82.3
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhh
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVL 128 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l 128 (162)
+.||+ .+|++.... .-.||+....++++++|||||||+.+||+ ++||+|+|+++|+++++- .....+++
T Consensus 48 ~~l~~-~rL~i~~~~---~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~~g~~-~~~i~~~~ 116 (181)
T cd03766 48 LLFTS-SVLSLRGDH---VTRQPLVDQSTGNVLQWNGELYNIDGVED------EENDTEVIFELLANCSSE-SQDILDVL 116 (181)
T ss_pred EEEEe-eEEEecCCC---CCCCCCEeCCCCEEEEECCEEECcccccC------CCCHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 45565 788888853 23566776667899999999999999996 789999999999986520 00013799
Q ss_pred hccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 129 RDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 129 ~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
++|+|+|||||||++++++++|||++|+|++.
T Consensus 117 ~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~ 148 (181)
T cd03766 117 SSIEGPFAFIYYDASENKLYFGRDCLGRRSLL 148 (181)
T ss_pred HhcccceEEEEEeCCCCEEEEEECCCCCcCcE
Confidence 99999999999999999999999999999975
No 13
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.88 E-value=2.5e-22 Score=162.51 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=84.1
Q ss_pred eCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhHhcCCCchhh
Q 031302 51 FGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG---L-SKGSNEAMFVIEAYRTLRDRGPYPAHQ 126 (162)
Q Consensus 51 ~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G---~-~ks~sE~eviieaY~~~~drGpyp~~~ 126 (162)
+|+ ++++.+.... -.||+....+++++++||||||+.+|+++++ . .++.||+|+|+++|++|+ .+
T Consensus 44 lgh-~rl~~~~~~~---~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g-------~~ 112 (220)
T cd00712 44 LGH-RRLSIIDLSG---GAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWG-------ED 112 (220)
T ss_pred EEE-EeeeecCccc---CCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHHHHHHHHHh-------HH
Confidence 344 5566555442 3677788778999999999999999999983 3 378999999999999864 58
Q ss_pred hhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 127 VLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 127 ~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
++++|+|+|||++||.+++++++|||++|+|+++
T Consensus 113 ~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy 146 (220)
T cd00712 113 CLERLNGMFAFALWDKRKRRLFLARDRFGIKPLY 146 (220)
T ss_pred HHHHhhheEEEEEEECCCCEEEEEECCCCCEeeE
Confidence 9999999999999999999999999999999975
No 14
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.80 E-value=2.9e-19 Score=145.68 Aligned_cols=108 Identities=14% Similarity=0.183 Sum_probs=84.9
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP 123 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp 123 (162)
.+-+|| .++|....... .-.||+....+++.+++||+|||+.+||+++ |+ .+++||+|+|+++|.+++..|+-+
T Consensus 65 ~~~igH-~R~at~g~~~~-~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~ 142 (215)
T cd00714 65 HVGIGH-TRWATHGEPTD-VNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDL 142 (215)
T ss_pred cEEEEE-EEccCCCCCCc-cCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCH
Confidence 466777 77777765322 2356666666789999999999999999997 55 488999999999999886544311
Q ss_pred h---hhhhhccCccEEEEEEECCCC-eEEEEecCCCccccc
Q 031302 124 A---HQVLRDLDGSFGFVLYDCKAG-TIFAALASPLNSFVF 160 (162)
Q Consensus 124 ~---~~~l~~L~GmFAF~iyD~~~~-~lflARD~~G~k~~~ 160 (162)
. .+++++|+|||||+|||+.++ ++++||| +||++
T Consensus 143 ~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~ 180 (215)
T cd00714 143 LEAVKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLV 180 (215)
T ss_pred HHHHHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcE
Confidence 1 169999999999999999875 9999999 47764
No 15
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.79 E-value=1.3e-18 Score=132.64 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=85.4
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA 124 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~ 124 (162)
+-+|| .++|-.-....... ||.-...+++++++||+|+|+.+||+++ |+ .++.||+|+|++++++++
T Consensus 14 ~~lgH-~R~AT~G~~~~~~~-hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~~g------- 84 (133)
T PF13522_consen 14 AALGH-TRYATVGSPTEENN-HPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHRWG------- 84 (133)
T ss_pred EEEEE-eecCCCCCCCCcCC-CCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHH-------
Confidence 56677 67887776622123 5555566789999999999999999998 44 388999999999997654
Q ss_pred hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+++++|+|+|+|++||+..++++++||+.|+++++
T Consensus 85 ~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~ 120 (133)
T PF13522_consen 85 EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLY 120 (133)
T ss_pred HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEE
Confidence 579999999999999999999999999999999874
No 16
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.77 E-value=2e-18 Score=155.52 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=84.7
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCC
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGP 121 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGp 121 (162)
.+-+|| +++|....... --.||+.. ..+++++||||+|||+.+||++| |+ .+|+||+|||+++|.++++..+
T Consensus 66 ~~~iGH-~R~at~g~~~~-~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~ 143 (445)
T PRK08525 66 EIAIGH-NRYSTAGNDSI-LDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESL 143 (445)
T ss_pred cEEEee-cccccCCCCCC-CCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCH
Confidence 467788 78887764321 22466665 55789999999999999999997 65 4899999999999987642100
Q ss_pred C-chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 122 Y-PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 122 y-p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
. -..+++++|+|+|||+++|+ ++++++||++|+||++
T Consensus 144 ~ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~ 181 (445)
T PRK08525 144 KDRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLS 181 (445)
T ss_pred HHHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeE
Confidence 0 01368999999999999995 7899999999999975
No 17
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.76 E-value=7.9e-19 Score=159.70 Aligned_cols=101 Identities=25% Similarity=0.303 Sum_probs=89.3
Q ss_pred EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC-C-CCCCchHHHHHHHHHHhHhcCCCchhhh
Q 031302 50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG-L-SKGSNEAMFVIEAYRTLRDRGPYPAHQV 127 (162)
Q Consensus 50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~-~ks~sE~eviieaY~~~~drGpyp~~~~ 127 (162)
.||+ -+||++... +--||++++...++|..||||||+++||+..- + .+|.||+|+||++|++.| | .|+
T Consensus 44 ~l~h-eRLAIvdp~---sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~khg--~----~~~ 113 (543)
T KOG0571|consen 44 ILGH-ERLAIVDPT---SGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEKHG--G----EQA 113 (543)
T ss_pred cccc-cceeEecCC---cCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhhcC--c----hhH
Confidence 6777 789999974 34789999999999999999999999999873 5 377889999999999975 3 689
Q ss_pred hhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 128 LRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 128 l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+..|+|||||+++|.+.+++.+|||+.|++++.
T Consensus 114 ~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY 146 (543)
T KOG0571|consen 114 ICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLY 146 (543)
T ss_pred HHHhhhheEEEEecCCCCeEEeccCCcCceeeE
Confidence 999999999999999999999999999998764
No 18
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.73 E-value=3.9e-17 Score=128.39 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=84.7
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC----CCCCCchHHHHHHHHHHhHhcCC--
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP-- 121 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G----~~ks~sE~eviieaY~~~~drGp-- 121 (162)
.+-+|| .++|-...... ...||.....+++++++||+|+|+.+||+++. ..++.||+|+|+++|..|++.+.
T Consensus 69 ~~~i~H-~R~at~g~~~~-~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~ 146 (220)
T cd00352 69 GVALGH-VRLATNGLPSE-ANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLF 146 (220)
T ss_pred CEEEEE-eEeeecCCCCC-CCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHH
Confidence 344555 55555543222 33455555557999999999999999999873 25889999999999998763221
Q ss_pred CchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 122 YPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 122 yp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.-..+++++++|.|+|+|||..+++++++||+.|.++++
T Consensus 147 ~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~ 185 (220)
T cd00352 147 EAVEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLY 185 (220)
T ss_pred HHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeE
Confidence 001479999999999999999999999999999999874
No 19
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.71 E-value=3.9e-17 Score=148.88 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=80.8
Q ss_pred EEeCCceeEEeeCCCCCCCCCccee--ecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWF--CGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY 122 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy 122 (162)
+-+|| .++|-.-.... .-.||++ +..+++.+++||+|||+.+||++| |+ .+++||+|||+++|.+++.....
T Consensus 77 ~gIGH-~RysT~G~~~~-~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~ 154 (475)
T PRK07631 77 AAIGH-VRYATAGGGGY-ENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLK 154 (475)
T ss_pred EEEEE-eeccccCCCCc-CCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHH
Confidence 55666 55555543322 2245553 445789999999999999999997 65 48999999999999986421100
Q ss_pred -chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 123 -PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 123 -p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
-..+++++|+|+|||++||. +++++|||+.|+||+.
T Consensus 155 eai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~ 191 (475)
T PRK07631 155 EQIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLS 191 (475)
T ss_pred HHHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEE
Confidence 00258999999999999996 6799999999999975
No 20
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.71 E-value=3.9e-17 Score=148.77 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=82.3
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY 122 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy 122 (162)
+-+|| .++|....... ...||++. ..+++++++||+|||+.+||++| |+ .+++||+|||+++|.++.. +.+
T Consensus 88 ~~IGH-~R~sT~G~~~~-~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~ 164 (479)
T PRK09123 88 RAIGH-VRYSTTGETIL-RNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASF 164 (479)
T ss_pred EEEEE-EecccCCCCCc-CCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCH
Confidence 45677 66766664322 23466655 35789999999999999999997 54 4899999999999987541 100
Q ss_pred c--hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 123 P--AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 123 p--~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
. ..+++++|+|+|||++||. ++++++||++|+||+.
T Consensus 165 ~eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~ 202 (479)
T PRK09123 165 LDRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLV 202 (479)
T ss_pred HHHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceE
Confidence 0 0468999999999999997 6899999999999974
No 21
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.71 E-value=8.4e-17 Score=146.60 Aligned_cols=109 Identities=10% Similarity=0.133 Sum_probs=83.4
Q ss_pred EEEeCCceeEEeeCCCCCCCCCccee--ecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhH-hcC
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWF--CGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLR-DRG 120 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~-drG 120 (162)
.+-+|| .++|....... ...||+. +..+++.+++||+|||+.+||++| |+ .+|+||+|||+++|.... .+|
T Consensus 83 ~~gIGH-~RyaT~G~~~~-~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~ 160 (474)
T PRK06388 83 IVGVGH-TRYSTAGSKGV-ENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYG 160 (474)
T ss_pred cEEEee-eeeeecCCCCc-cCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 467888 88888775432 2234443 345789999999999999999997 65 489999999999996432 234
Q ss_pred CCc-hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 121 PYP-AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 121 pyp-~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
..- ..+++++|+|+|||+|+++ ++|+++||+.|+||+.
T Consensus 161 ~~eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~ 199 (474)
T PRK06388 161 LKEGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLV 199 (474)
T ss_pred HHHHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceE
Confidence 200 0358999999999999975 7899999999999975
No 22
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.71 E-value=9.7e-17 Score=134.16 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=86.2
Q ss_pred ChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCch
Q 031302 30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNE 105 (162)
Q Consensus 30 ~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE 105 (162)
...++.+.+.. .+ -.-.+-+|| +++|..-.... ...||+... ++.+++||+|||+.+||+++ |+ ..++||
T Consensus 62 ~~~~v~~~~~~-~~-~~~~~~igH-~R~aT~g~~~~-~n~qP~~~~--~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sD 135 (249)
T cd01907 62 YPEDIARRYDL-EE-YKGYHWIAH-TRQPTNSAVWW-YGAHPFSIG--DIAVVHNGEISNYGSNREYLERFGYKFETETD 135 (249)
T ss_pred CHHHHHhhcCc-hh-eEEEEEEEE-EeccCCCCCCc-cCCCCeecC--CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCH
Confidence 45556554432 11 123466777 66665433222 234565543 89999999999999999987 54 488999
Q ss_pred HHHHHHHHHHhH-hcCCCchh----------------------hhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 106 AMFVIEAYRTLR-DRGPYPAH----------------------QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 106 ~eviieaY~~~~-drGpyp~~----------------------~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+|+|+++|+.+. .+|. |.+ .++++|+|+|||+++|. +.++++||++|+||+.
T Consensus 136 sEvi~~ll~~~~~~~g~-~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~ 210 (249)
T cd01907 136 TEVIAYYLDLLLRKGGL-PLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAV 210 (249)
T ss_pred HHHHHHHHHHHHHhCCC-hHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEE
Confidence 999999987543 2342 212 47899999999999996 4589999999999975
No 23
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.70 E-value=5.4e-17 Score=148.75 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=84.5
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP 123 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp 123 (162)
.+-+|| .++|....... ...||+....+++.+++||+|||+.+||+++ |+ .+++||+|||+++|.++.+.|.-+
T Consensus 66 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~ 143 (604)
T PRK00331 66 TTGIGH-TRWATHGKPTE-RNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDL 143 (604)
T ss_pred cEEEEE-EecCCCCCCcc-ccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCH
Confidence 455677 66777664322 3356666666899999999999999999998 55 488999999999999876555211
Q ss_pred h---hhhhhccCccEEEEEEECCC-CeEEEEecCCCccccc
Q 031302 124 A---HQVLRDLDGSFGFVLYDCKA-GTIFAALASPLNSFVF 160 (162)
Q Consensus 124 ~---~~~l~~L~GmFAF~iyD~~~-~~lflARD~~G~k~~~ 160 (162)
. .+++++|+|+|||+|||+.+ +++++|||. ||++
T Consensus 144 ~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~ 181 (604)
T PRK00331 144 LEAVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLV 181 (604)
T ss_pred HHHHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceE
Confidence 1 35899999999999999997 999999995 6653
No 24
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.69 E-value=8.3e-17 Score=147.60 Aligned_cols=108 Identities=13% Similarity=0.182 Sum_probs=83.4
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP 123 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp 123 (162)
.+-+|| .++|....... .-.||+....+++.+++||+||||.+||+++ |+ .+++||+|||+++|.++++.|+-+
T Consensus 65 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~ 142 (607)
T TIGR01135 65 GVGIGH-TRWATHGKPTE-ENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDL 142 (607)
T ss_pred cEEEEE-eeccCCCCCCc-cCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCH
Confidence 456777 77777764322 2356666666789999999999999999998 55 488999999999999887544211
Q ss_pred h---hhhhhccCccEEEEEEECCC-CeEEEEecCCCccccc
Q 031302 124 A---HQVLRDLDGSFGFVLYDCKA-GTIFAALASPLNSFVF 160 (162)
Q Consensus 124 ~---~~~l~~L~GmFAF~iyD~~~-~~lflARD~~G~k~~~ 160 (162)
. .+++++|+|||||+|||+.+ ++++++||. ||++
T Consensus 143 ~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~ 180 (607)
T TIGR01135 143 LEAVQKALKQLRGAYALAVLHADHPETLVAARSG---SPLI 180 (607)
T ss_pred HHHHHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceE
Confidence 1 26899999999999999887 469999994 6653
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.69 E-value=1.8e-16 Score=131.63 Aligned_cols=109 Identities=13% Similarity=0.198 Sum_probs=82.4
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcC-
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRG- 120 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drG- 120 (162)
.+-+|| .++|....... ...||+.. ..+++++++||+|||+.+||+++ |. .+++||+|+|+++|..+++.+
T Consensus 65 ~~~lgH-~R~at~g~~~~-~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~ 142 (252)
T cd00715 65 NIAIGH-VRYSTAGSSSL-ENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDD 142 (252)
T ss_pred cEEEEE-EEcccCCCCCc-cCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCC
Confidence 356677 66666654332 23455554 34689999999999999999997 33 378899999999999875321
Q ss_pred CCch-hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 121 PYPA-HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 121 pyp~-~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+.-+ .+++++|+|+|||++||. ++|+++||+.|+|+++
T Consensus 143 ~~~al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~ 181 (252)
T cd00715 143 LFEAIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLV 181 (252)
T ss_pred HHHHHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeE
Confidence 0000 258999999999999998 9999999999999864
No 26
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.69 E-value=1.5e-16 Score=145.94 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=82.1
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeec--CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY 122 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy 122 (162)
+-+|| .++|.+-.... ...||+... .+++.+++||+|||+.+||++| |+ .+++||+|||+++|..+.+.|.-
T Consensus 100 i~IGH-vRysT~G~~~~-~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~ 177 (500)
T PRK07349 100 LAVGH-TRYSTTGSSRK-ANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKD 177 (500)
T ss_pred EEEEE-eecccCCCCCc-cCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 56677 66666654322 235666543 4789999999999999999997 55 48999999999999864433311
Q ss_pred ch---hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 123 PA---HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 123 p~---~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+. .+++++|+|+|||+|.|. ++|+++||++|+||++
T Consensus 178 ~~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~ 216 (500)
T PRK07349 178 WLEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLV 216 (500)
T ss_pred HHHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeE
Confidence 11 358899999999999875 6799999999999964
No 27
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.68 E-value=2.3e-16 Score=142.61 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=79.7
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeec--CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hHhcC
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-LRDRG 120 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-~~drG 120 (162)
.+.+|| .++|......+ .||+... .+++.+++||+|||+.+||++| |+ .+|+||+|||++++.. +.++|
T Consensus 67 ~~~IGH-~R~sT~G~~~~---~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~ 142 (442)
T PRK08341 67 NLAIGH-VRYSTSGSLSE---VQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETG 142 (442)
T ss_pred CEEEEE-eeccccCCCcC---cCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcC
Confidence 366777 77777664333 4554443 4689999999999999999997 55 4889999999776432 22334
Q ss_pred CC--chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 121 PY--PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 121 py--p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.. -..+++++|+|+|||+|.+. ++++++||+.|+||+.
T Consensus 143 ~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~ 182 (442)
T PRK08341 143 DEFEAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLS 182 (442)
T ss_pred CHHHHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEE
Confidence 21 01247899999999999986 7899999999999974
No 28
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.68 E-value=1.9e-16 Score=144.76 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=82.4
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCC
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGP 121 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGp 121 (162)
.+-+|| .++|..-.... -..||+.. ..+++.+++||+|||+.+||+++ |+ .+|+||+|||+++|.++.. +.
T Consensus 77 ~~~IGH-~RysT~G~~~~-~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~ 153 (484)
T PRK07272 77 QAAIGH-VRYATAGSASI-ENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PT 153 (484)
T ss_pred cEEEEE-eeccccCCCCc-CCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CC
Confidence 356677 66666654321 22566654 45789999999999999999997 65 4899999999999987531 10
Q ss_pred C--chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 122 Y--PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 122 y--p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
. -..+++++|+|+|||+|+|. ++|+++||+.|+||+.
T Consensus 154 ~~eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~ 192 (484)
T PRK07272 154 FMGKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLS 192 (484)
T ss_pred HHHHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEE
Confidence 0 01368999999999999996 6899999999999974
No 29
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.67 E-value=2.1e-16 Score=145.19 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=81.2
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceeec---CCcEEEEEcceecCHHHHHHHh---CC------CCCCchHHHHHHHHHHh
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFCG---LHNVYCMFMGSLNNLSSLNKQY---GL------SKGSNEAMFVIEAYRTL 116 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~~---~~~i~~vFNGeIyN~~eLr~q~---G~------~ks~sE~eviieaY~~~ 116 (162)
+-+|| .++|.+..... ...||+... .+++.+++||+|||+.+||+++ |. .+++||+|||++++..+
T Consensus 90 i~IGH-vR~sT~G~~~~-~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~ 167 (510)
T PRK07847 90 VAIGH-CRYSTTGASTW-ENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHG 167 (510)
T ss_pred EEEEe-ccCCcCCCCcc-cCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHh
Confidence 44666 55555443321 224555532 5789999999999999999997 54 58999999999999876
Q ss_pred HhcCCCc--hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 117 RDRGPYP--AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 117 ~drGpyp--~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+.|... ..+++++|+|+|||++||. ++|+++||++|+||+.
T Consensus 168 ~~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~ 211 (510)
T PRK07847 168 AADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLV 211 (510)
T ss_pred ccCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcE
Confidence 5322110 0258999999999999996 6899999999999974
No 30
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.65 E-value=9.6e-16 Score=139.54 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=80.1
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY 122 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy 122 (162)
+-+|| .++|-+-.... ...||++. ..+++.+++||+|||+.+||++| |. .+++||+|||+++|..+.. + -
T Consensus 77 ~~IGH-vRyaT~G~~~~-~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~-~ 152 (471)
T PRK06781 77 SAIGH-VRYATAGGSEV-ANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-D-S 152 (471)
T ss_pred EEEEE-eEcccCCCCCc-CCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-C-C
Confidence 45566 55555554322 22455532 35689999999999999999997 54 4899999999999987542 1 0
Q ss_pred c---hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 123 P---AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 123 p---~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+ ..+++++|+|+|||+++|. +++++|||+.|+||++
T Consensus 153 ~~eai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~ 191 (471)
T PRK06781 153 LIESVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLS 191 (471)
T ss_pred HHHHHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeE
Confidence 1 0357899999999999995 7899999999999975
No 31
>PLN02440 amidophosphoribosyltransferase
Probab=99.64 E-value=1.1e-15 Score=139.01 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=79.8
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhH-----
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLR----- 117 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~----- 117 (162)
+-+|| .++|-+..... .-.||+.. ..+++++++||+|+|+.+||++| |. .+++||+|+|+++|.++.
T Consensus 67 ~~IGH-vRysT~G~~~~-~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~ 144 (479)
T PLN02440 67 IAIGH-VRYSTAGASSL-KNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFF 144 (479)
T ss_pred EEEEE-EeccccCCCCc-cCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHH
Confidence 45666 55555543222 23556554 34679999999999999999997 44 489999999999997652
Q ss_pred hcCCCchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 118 DRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 118 drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+++ .+++++|+|+|||++||+ ++|+++||+.|+||+.
T Consensus 145 ~a~----~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~ 181 (479)
T PLN02440 145 SRI----VDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLV 181 (479)
T ss_pred HHH----HHHHHHhccceeeeEEEC--CEEEEEECCCCCCceE
Confidence 122 479999999999999996 4699999999999975
No 32
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.63 E-value=1e-15 Score=142.08 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=82.7
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP 123 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp 123 (162)
.+-+|| .++|..-.... .-.||+....+++.+|+||+|||+.+||+++ |+ .+++||+|||+++|..+.++|.-+
T Consensus 96 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~ 173 (640)
T PTZ00295 96 TIGIAH-TRWATHGGKTD-ENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDF 173 (640)
T ss_pred cEEEEE-eccccCCCCCc-CCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCH
Confidence 466777 77887754322 2245555555799999999999999999997 65 489999999999987554455211
Q ss_pred ---hhhhhhccCccEEEEEEECC-CCeEEEEecCCCccccc
Q 031302 124 ---AHQVLRDLDGSFGFVLYDCK-AGTIFAALASPLNSFVF 160 (162)
Q Consensus 124 ---~~~~l~~L~GmFAF~iyD~~-~~~lflARD~~G~k~~~ 160 (162)
..+++++|+|+|||++||+. .++++++||+ ||++
T Consensus 174 ~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~ 211 (640)
T PTZ00295 174 QEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLL 211 (640)
T ss_pred HHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceE
Confidence 12589999999999999987 5899999996 6653
No 33
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.62 E-value=1.7e-15 Score=137.50 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=81.1
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY 122 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy 122 (162)
+-+|| .++|.+-.... ...||... ..+++.+++||+|||+.+||+++ |+ .+++||+|+|++++.++...++.
T Consensus 82 ~~iGH-vR~sT~G~~~~-~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~ 159 (469)
T PRK05793 82 SAIGH-VRYSTTGASDL-DNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLE 159 (469)
T ss_pred EEEEE-eecccCCCCCC-CCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHH
Confidence 55666 55555543222 22455554 35789999999999999999997 54 48899999999999876432210
Q ss_pred c-hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 123 P-AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 123 p-~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
- -.+++++|+|+|||+++|. ++++++||+.|+||+.
T Consensus 160 ~ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~ 196 (469)
T PRK05793 160 KALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLC 196 (469)
T ss_pred HHHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcE
Confidence 0 0258999999999999986 7899999999999974
No 34
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.60 E-value=4.7e-15 Score=139.37 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=78.1
Q ss_pred EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hHhcCCC
Q 031302 48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-LRDRGPY 122 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-~~drGpy 122 (162)
.+-+|| .++|....... -..||+....+++.+|+||+||||.+||++| |+ .+|+||+|||+++.+. |.+||..
T Consensus 98 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~ 175 (670)
T PTZ00394 98 HVGIAH-TRWATHGGVCE-RNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIH 175 (670)
T ss_pred CEEEEE-eeceecCCCCc-CCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCC
Confidence 367787 88888775322 2245666667899999999999999999997 66 4899999999976432 2224521
Q ss_pred ch----hhhhhccCccEEEEEEEC-CCCeEEEEecC
Q 031302 123 PA----HQVLRDLDGSFGFVLYDC-KAGTIFAALAS 153 (162)
Q Consensus 123 p~----~~~l~~L~GmFAF~iyD~-~~~~lflARD~ 153 (162)
.. .+++++|+|||||++.+. ..+++++|||+
T Consensus 176 ~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~ 211 (670)
T PTZ00394 176 NFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG 211 (670)
T ss_pred CHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC
Confidence 11 269999999999999965 45899999998
No 35
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.58 E-value=7.4e-15 Score=134.18 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=77.5
Q ss_pred EeCCceeEEeeCCCCCCCCCccee-ecCCcEEEEEcceecCHHHHHHHh----C-CCCCCchHHHHHHHHHHhHhc--CC
Q 031302 50 NFGNAAALAYVPPENPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQY----G-LSKGSNEAMFVIEAYRTLRDR--GP 121 (162)
Q Consensus 50 ~~g~~~~lAys~~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~----G-~~ks~sE~eviieaY~~~~dr--Gp 121 (162)
-+|| .++|.+-.... ...||+. ...+++.+++||+|||+.+||+++ | ..+++||+|||+++|.++... |.
T Consensus 68 ~IGH-vRysT~G~~~~-~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~ 145 (501)
T PRK09246 68 GIGH-VRYPTAGSSSS-AEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGL 145 (501)
T ss_pred EEEE-EcCCcCCCCCc-ccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhcccc
Confidence 4555 44444443222 2245554 444569999999999999999987 2 248999999999999876432 20
Q ss_pred --Cch------hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 122 --YPA------HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 122 --yp~------~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
-+. .+++++|+|+|||++|.. .++++++||++|+||+.
T Consensus 146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~ 191 (501)
T PRK09246 146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLV 191 (501)
T ss_pred ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeE
Confidence 011 158999999999999843 45699999999999975
No 36
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.56 E-value=2.5e-14 Score=128.91 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=79.6
Q ss_pred EEeCCceeEEeeCCCCCCCCCccee-ecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP 123 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp 123 (162)
+-+|| .++|-+-.... ...||+. ...+++.+++||+|+|+.+||+++ |. .++.||+|+|+++|..++..+.-.
T Consensus 67 ~~IgH-vR~aT~G~~~~-~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~ 144 (442)
T TIGR01134 67 VGIGH-VRYSTAGSSSL-SNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDL 144 (442)
T ss_pred EEEEE-EEecCCCCCCc-cCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCH
Confidence 55666 55655554222 2245555 333469999999999999999997 44 488999999999998864111000
Q ss_pred h---hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 124 A---HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 124 ~---~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
. .+++++|+|+|||++||. ++++++||+.|+|++.
T Consensus 145 ~~ai~~~~~~l~G~falvi~~~--~~L~a~RD~~G~rPL~ 182 (442)
T TIGR01134 145 FEAIARVLKRVRGAYALVIMIG--DGLIAVRDPHGIRPLV 182 (442)
T ss_pred HHHHHHHHHHhCccceEEEEEC--CEEEEEECCCCCCCcE
Confidence 0 358999999999999974 6899999999999874
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.52 E-value=5e-14 Score=132.50 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=73.7
Q ss_pred EEeCCceeEEeeCCCCCCCCCcceee-cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hHhcCCC
Q 031302 49 INFGNAAALAYVPPENPNSVSQRWFC-GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-LRDRGPY 122 (162)
Q Consensus 49 ~~~g~~~~lAys~~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-~~drGpy 122 (162)
+-+|| .++|-.-.... -..||+.. ..+++.+|+||+||||.+||++| |+ .+|+||+|||+++.+. +..+|+.
T Consensus 88 ~~IGH-~R~at~g~~~~-~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~ 165 (680)
T PLN02981 88 AGIAH-TRWATHGPPAP-RNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEE 165 (680)
T ss_pred EEEEE-cccccCCCCCc-CCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccc
Confidence 55666 66666553211 11344443 34689999999999999999997 66 4899999999998332 2234431
Q ss_pred ----ch----hhhhhccCccEEEEEEECCC-CeEEEEec
Q 031302 123 ----PA----HQVLRDLDGSFGFVLYDCKA-GTIFAALA 152 (162)
Q Consensus 123 ----p~----~~~l~~L~GmFAF~iyD~~~-~~lflARD 152 (162)
.. .+++++|+|+|||+|.++.. +++++|||
T Consensus 166 ~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~ 204 (680)
T PLN02981 166 EGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKR 204 (680)
T ss_pred cCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEec
Confidence 00 14899999999999999775 99999999
No 38
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=2.5e-10 Score=107.24 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=82.5
Q ss_pred ChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCch
Q 031302 30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNE 105 (162)
Q Consensus 30 ~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE 105 (162)
+-.++ +.-....| -.-.+-+|| .++| +|-..+.-.-+|.++ +++.+|.||-|.||.+||++| |+ .+|+||
T Consensus 51 kv~~l-~~~~~~~~-~~~~~gIgH-TRWA-THG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TD 124 (597)
T COG0449 51 KISNL-EELLNKEP-LIGGVGIAH-TRWA-THGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTD 124 (597)
T ss_pred CHHHH-Hhhhcccc-cCCceeeee-cccc-CCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCc
Confidence 34444 33333333 234566677 6666 333322223344444 899999999999999999998 77 499999
Q ss_pred HHHHHHHHHHhHhcCCCch-hhhhhccCccEEEEEEECCC-CeEEEEec
Q 031302 106 AMFVIEAYRTLRDRGPYPA-HQVLRDLDGSFGFVLYDCKA-GTIFAALA 152 (162)
Q Consensus 106 ~eviieaY~~~~drGpyp~-~~~l~~L~GmFAF~iyD~~~-~~lflARD 152 (162)
||||.++.+..-+.|..-+ ..++++|+|.||+++-|+.. +++++||-
T Consensus 125 TEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~ 173 (597)
T COG0449 125 TEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARK 173 (597)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcC
Confidence 9999999976543332111 35899999999999999997 79999985
No 39
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.91 E-value=6.1e-09 Score=95.57 Aligned_cols=108 Identities=14% Similarity=0.236 Sum_probs=79.9
Q ss_pred EEEeCCceeEEeeCCCCC-CCCCcceeecCC--cEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHh-c
Q 031302 48 SINFGNAAALAYVPPENP-NSVSQRWFCGLH--NVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRD-R 119 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~-~~~~~~~f~~~~--~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~d-r 119 (162)
++-+|| .-|+-...+ ....||.+.... .+.+++||.|-|..+||++| |. ..|++|+|||++++..-.+ .
T Consensus 72 ~~~IGH---vRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~ 148 (470)
T COG0034 72 NVGIGH---VRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDED 148 (470)
T ss_pred cceeeE---eeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccc
Confidence 445565 566655533 133466666544 58999999999999999997 55 4889999999999985332 1
Q ss_pred CCCc-hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 120 GPYP-AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 120 Gpyp-~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
+... ..+++++++|-||+++-.+. .|+++||+.|+||+.
T Consensus 149 ~~~~a~~~~~~~v~G~ys~v~~~~~--~lia~RDP~GiRPL~ 188 (470)
T COG0034 149 DIFEAVKEVLRRVKGAYALVALIKD--GLIAVRDPNGIRPLV 188 (470)
T ss_pred cHHHHHHHHHhhcCCcEEEEEEECC--eEEEEECCCCCccce
Confidence 1110 13577899999999999764 999999999999974
No 40
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=98.49 E-value=2.4e-07 Score=85.55 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=60.3
Q ss_pred ecCCcEEEEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecC
Q 031302 74 CGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153 (162)
Q Consensus 74 ~~~~~i~~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~ 153 (162)
.++++++..|||||||-. .+.+..|+..|.+....+++-|- -.+.++.++|-|||++||.++++||..||+
T Consensus 66 v~d~~~vfl~NGeIyn~~-------~s~~~~d~~~l~~~l~~~~e~~~--Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~ 136 (520)
T KOG0573|consen 66 VEDDRYVFLFNGEIYNGE-------KSDTLFDTDILAEELSNLKESGD--ILDIIKSLQGPWAFIYYDVRSDKLYFGRDD 136 (520)
T ss_pred ecccceEEEecceeccCC-------CccccchHHHHHHHHhcCCcccc--HHHHHHhccCCceEEEEEccCcEEEEeccc
Confidence 344568999999999943 24556688878887777653331 245778899999999999999999999999
Q ss_pred CCcccc
Q 031302 154 PLNSFV 159 (162)
Q Consensus 154 ~G~k~~ 159 (162)
+|++-+
T Consensus 137 ~GRrSL 142 (520)
T KOG0573|consen 137 IGRRSL 142 (520)
T ss_pred ccceee
Confidence 999854
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.43 E-value=2.5e-06 Score=77.54 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=60.6
Q ss_pred EEEEcceecCHHHHHHHh------------C---------CCCCCchHHHHHHHHHHhHhcCCCchh-------------
Q 031302 80 YCMFMGSLNNLSSLNKQY------------G---------LSKGSNEAMFVIEAYRTLRDRGPYPAH------------- 125 (162)
Q Consensus 80 ~~vFNGeIyN~~eLr~q~------------G---------~~ks~sE~eviieaY~~~~drGpyp~~------------- 125 (162)
+++.||||+|+..+|+.+ | ...+.||++++.++.+.+-..|....+
T Consensus 226 ~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~ 305 (413)
T cd00713 226 YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNN 305 (413)
T ss_pred eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccC
Confidence 589999999999998764 1 124689999898888766544532222
Q ss_pred ---------------hhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302 126 ---------------QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF 160 (162)
Q Consensus 126 ---------------~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~ 160 (162)
.+.+.++|-||+++-|. +.+.++|||.|.||+.
T Consensus 306 ~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~ 353 (413)
T cd00713 306 PTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR 353 (413)
T ss_pred ccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence 23477999999999985 7899999999999863
No 42
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.34 E-value=3.2e-06 Score=77.16 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=74.7
Q ss_pred EEEeCCceeEEeeCCCCCC-CCCcceeec--CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-----
Q 031302 48 SINFGNAAALAYVPPENPN-SVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT----- 115 (162)
Q Consensus 48 s~~~g~~~~lAys~~~~~~-~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~----- 115 (162)
+|-+|| +-|+-...+- .-.||.... .+.+.+..||++-|+++||+++ |. -.|+||+|+|++.+..
T Consensus 69 ~~gIGH---~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~ 145 (474)
T KOG0572|consen 69 SIGIGH---TRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDV 145 (474)
T ss_pred ceeeee---eecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhh
Confidence 455555 6777554331 334665443 4568999999999999999997 54 3778888888887642
Q ss_pred hHhcCC-Cch--hhhhhccCccEEEEEEECCCCeEEEEecCCCcccc
Q 031302 116 LRDRGP-YPA--HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFV 159 (162)
Q Consensus 116 ~~drGp-yp~--~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~ 159 (162)
+|..+| +++ .++.++++|.|+.++-=. +.|++.||++|+||+
T Consensus 146 ~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL 190 (474)
T KOG0572|consen 146 YRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPL 190 (474)
T ss_pred hcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccc
Confidence 121222 111 247889999999888743 559999999999986
No 43
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=98.26 E-value=3.6e-06 Score=70.28 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=60.6
Q ss_pred CcceeecCCcEEEEEcceecCHHHHHHHh---C--CCCCCchHHHHHHHHHHhHh-cCCC------ch-hhhhhccC---
Q 031302 69 SQRWFCGLHNVYCMFMGSLNNLSSLNKQY---G--LSKGSNEAMFVIEAYRTLRD-RGPY------PA-HQVLRDLD--- 132 (162)
Q Consensus 69 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G--~~ks~sE~eviieaY~~~~d-rGpy------p~-~~~l~~L~--- 132 (162)
.||... ++++++.||.|+|+.+||+.+ | ..+++||+|++.++.....+ .++- .+ .+.+++|+
T Consensus 100 ~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~ 177 (257)
T cd01908 100 CHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALA 177 (257)
T ss_pred CCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC
Confidence 444444 389999999999999999886 3 24788899988888765432 2221 01 34777888
Q ss_pred --ccEEEEEEECCCCeEEEEecCC
Q 031302 133 --GSFGFVLYDCKAGTIFAALASP 154 (162)
Q Consensus 133 --GmFAF~iyD~~~~~lflARD~~ 154 (162)
|.++|++-|. .+++++||+.
T Consensus 178 ~~~~~n~~~~dg--~~l~a~r~~~ 199 (257)
T cd01908 178 PPGRLNLLLSDG--EYLIATRYAS 199 (257)
T ss_pred cCeEEEEEEECC--CEEEEEEeCC
Confidence 7899999886 7799999986
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=97.96 E-value=8.1e-05 Score=66.44 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=71.1
Q ss_pred CChHHHHHHhhhcCCCCcEE--EEeCCceeEEeeCCCCC-CCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CC
Q 031302 29 KHPEEIFNEFLISQSSNAFS--INFGNAAALAYVPPENP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SK 101 (162)
Q Consensus 29 ~~~~~l~~~F~~~~~~~a~s--~~~g~~~~lAys~~~~~-~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~k 101 (162)
..+++|.+-|....- ..+. +.+|| .-|+-...+ ...-||.. +++-||||.|+..+|+.+ +. .+
T Consensus 176 ~~~~~l~~~y~Dl~~-~~~~s~~~i~H---~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~ 245 (361)
T PF00310_consen 176 GTPEQLAEFYPDLQD-EDFKSHFAIGH---QRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLN 245 (361)
T ss_dssp C-GGGHHHHCCGGGC-TTEEBSEEEEE---EEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBS
T ss_pred cCHHHHHHHHHhhcc-ccccceEEEEE---EecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhccccc
Confidence 466777777755322 2222 22233 334432221 13344444 899999999999999875 32 23
Q ss_pred C----------------CchHHHHHHHHHHhHhcCCCch-----------------------------hhhhhccCccEE
Q 031302 102 G----------------SNEAMFVIEAYRTLRDRGPYPA-----------------------------HQVLRDLDGSFG 136 (162)
Q Consensus 102 s----------------~sE~eviieaY~~~~drGpyp~-----------------------------~~~l~~L~GmFA 136 (162)
+ .||++++.++.+.+-.+| ++. ..+.+.++|-||
T Consensus 246 ~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaa 324 (361)
T PF00310_consen 246 SPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAA 324 (361)
T ss_dssp STTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEE
T ss_pred CccccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceE
Confidence 3 899999989888877777 111 124677999999
Q ss_pred EEEEECCCCeEEEEecCCCcccc
Q 031302 137 FVLYDCKAGTIFAALASPLNSFV 159 (162)
Q Consensus 137 F~iyD~~~~~lflARD~~G~k~~ 159 (162)
+++-|.. .++++|||.|.||.
T Consensus 325 i~~~~g~--~~~a~~Dr~GLRP~ 345 (361)
T PF00310_consen 325 IIFTDGN--GVGAFLDRNGLRPL 345 (361)
T ss_dssp EEEECSS--EEEEEE-TT--S--
T ss_pred EEEEeCC--EEEEEECCCCCcce
Confidence 9998764 59999999999986
No 45
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=97.85 E-value=1.2e-05 Score=75.84 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=63.8
Q ss_pred CcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC------chhhhhhccCccEEEE
Q 031302 69 SQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY------PAHQVLRDLDGSFGFV 138 (162)
Q Consensus 69 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy------p~~~~l~~L~GmFAF~ 138 (162)
||-.....+..++|.||-|-||++||+-+ |+ ..++||+|+|-++|...-|.-|. -.++++++|+|-||++
T Consensus 100 HP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalv 179 (670)
T KOG1268|consen 100 HPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLL 179 (670)
T ss_pred CCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHH
Confidence 45455666788899999999999999886 77 47789999898988866443330 0478999999999998
Q ss_pred EEECC-CCeEEEEecC
Q 031302 139 LYDCK-AGTIFAALAS 153 (162)
Q Consensus 139 iyD~~-~~~lflARD~ 153 (162)
+=-+. -+++.+.|+.
T Consensus 180 fkS~hfP~e~Va~Rrg 195 (670)
T KOG1268|consen 180 FKSSHFPGEVVAARKG 195 (670)
T ss_pred HHhhcCCcceeeeccC
Confidence 74332 3677777763
No 46
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=97.46 E-value=0.00041 Score=58.66 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=58.7
Q ss_pred CcceeecCCcEEEEEcceecCHH-----HHHHHh---CC--CCCCchHHHHHHHHHHhH-hcCCCch----hhhhhccCc
Q 031302 69 SQRWFCGLHNVYCMFMGSLNNLS-----SLNKQY---GL--SKGSNEAMFVIEAYRTLR-DRGPYPA----HQVLRDLDG 133 (162)
Q Consensus 69 ~~~~f~~~~~i~~vFNGeIyN~~-----eLr~q~---G~--~ks~sE~eviieaY~~~~-drGpyp~----~~~l~~L~G 133 (162)
.||... +++.++.||.|-|+. +||+++ |+ .+++||+|++.+++.... +..|... .++++.|.|
T Consensus 103 ~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~ 180 (251)
T TIGR03442 103 CAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFS 180 (251)
T ss_pred CCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Confidence 445443 689999999999998 566655 32 478889998888887653 3222221 246677787
Q ss_pred c-------EEEEEEECCCCeEEEEecCC
Q 031302 134 S-------FGFVLYDCKAGTIFAALASP 154 (162)
Q Consensus 134 m-------FAF~iyD~~~~~lflARD~~ 154 (162)
. |.|++=|. .+|++.||+.
T Consensus 181 ~~~~~~~~~n~~~sdg--~~l~a~R~~~ 206 (251)
T TIGR03442 181 AAAAPRVRLNLLLTDG--SRLVATRWAD 206 (251)
T ss_pred HhhCcccceEEEEEcC--CEEEEEEeCC
Confidence 7 99999984 8888889975
No 47
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=95.98 E-value=0.036 Score=46.50 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=55.4
Q ss_pred cceeecCCcEEEEEcceecCHHHHHHHhCC----CCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCC
Q 031302 70 QRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAG 145 (162)
Q Consensus 70 ~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~----~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~ 145 (162)
|-+-......+++ |.|||-.-||.-.|. .-.-||+|+++-.|..+| ...+.--+|.|.|.|=| +++
T Consensus 42 qk~~~~~~tayLI--GsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~-kng 111 (201)
T PF09147_consen 42 QKMRFERGTAYLI--GSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIED-KNG 111 (201)
T ss_dssp EEEEETTEEEEEE--S--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEE-TTS
T ss_pred eEEEecCccEEEE--EEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEec-CCC
Confidence 4444444455555 999999999977664 467899999999999886 57999999999999876 578
Q ss_pred eEEEEecCCCcccc
Q 031302 146 TIFAALASPLNSFV 159 (162)
Q Consensus 146 ~lflARD~~G~k~~ 159 (162)
+|.+-.|+-|-.+|
T Consensus 112 ~L~l~Tds~G~~pv 125 (201)
T PF09147_consen 112 ELTLITDSRGFNPV 125 (201)
T ss_dssp EEEEEE-SSSSS-E
T ss_pred cEEEEecCCCCceE
Confidence 99999999998776
No 48
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=88.69 E-value=4.3 Score=42.97 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=71.0
Q ss_pred CChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeec-CCcEEEEEcceecCHHHHHHH-----h--C--
Q 031302 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCG-LHNVYCMFMGSLNNLSSLNKQ-----Y--G-- 98 (162)
Q Consensus 29 ~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~-~~~i~~vFNGeIyN~~eLr~q-----~--G-- 98 (162)
..+++|.+-|..-.- ..+. +.+|..|+.-+ -...+.|.- .---+++.||||.-+.--|.- + .
T Consensus 193 l~~~ql~~fY~DL~d-~~~~------s~~al~HsRFS-TNT~PsW~~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~ 264 (1485)
T PRK11750 193 MMPADLPRFYLDLAD-LRLE------SAICVFHQRFS-TNTLPRWPLAQPFRYLAHNGEINTITGNRQWARARAYKFQTP 264 (1485)
T ss_pred ccHHHHHHhhhhhCC-ccee------EEEEEEECcCC-CCCCCCCCcCCCceeeeeccccccHHHHHHHHHHHHHhccCC
Confidence 567778777775422 1221 34666666544 223444432 223368999999866554322 1 1
Q ss_pred ----------C-CCCCchHHHHHHHHHHhHhcCCCch----------------------------hhhhhccCccEEEEE
Q 031302 99 ----------L-SKGSNEAMFVIEAYRTLRDRGPYPA----------------------------HQVLRDLDGSFGFVL 139 (162)
Q Consensus 99 ----------~-~ks~sE~eviieaY~~~~drGpyp~----------------------------~~~l~~L~GmFAF~i 139 (162)
. ....||++++=.+.+-|-..|-... .-+.+-++|-||+++
T Consensus 265 ~~~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~ 344 (1485)
T PRK11750 265 LIPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVM 344 (1485)
T ss_pred CcchHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 0 2456676665454443332221000 014455699999999
Q ss_pred EECCCCeEEEEecCCCcccc
Q 031302 140 YDCKAGTIFAALASPLNSFV 159 (162)
Q Consensus 140 yD~~~~~lflARD~~G~k~~ 159 (162)
-|. +.+.+.|||.|.||+
T Consensus 345 ~~g--~~i~A~~DrnGlRPl 362 (1485)
T PRK11750 345 TDG--RYAACNLDRNGLRPA 362 (1485)
T ss_pred EeC--CEEEEecCCCCCccc
Confidence 985 899999999999986
No 49
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=87.28 E-value=1.5 Score=37.56 Aligned_cols=73 Identities=22% Similarity=0.419 Sum_probs=42.4
Q ss_pred CcEEEEEcceecCHHHHHHH-hCCCCCCchHHHHHHHHH-HhHhcCC---Cchhh-------hhhccC--ccEEEEEEEC
Q 031302 77 HNVYCMFMGSLNNLSSLNKQ-YGLSKGSNEAMFVIEAYR-TLRDRGP---YPAHQ-------VLRDLD--GSFGFVLYDC 142 (162)
Q Consensus 77 ~~i~~vFNGeIyN~~eLr~q-~G~~ks~sE~eviieaY~-~~~drGp---yp~~~-------~l~~L~--GmFAF~iyD~ 142 (162)
++++.+.||.|+++..++.. |- -.++||.|.+..+.- .+++.++ ...++ .+++++ |.+.|++.|-
T Consensus 101 ~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG 179 (271)
T PF13230_consen 101 RRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDG 179 (271)
T ss_dssp TTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S
T ss_pred CcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECC
Confidence 58999999999999887733 32 355666665555543 3444332 11111 234444 7899999996
Q ss_pred CCCeEEEEec
Q 031302 143 KAGTIFAALA 152 (162)
Q Consensus 143 ~~~~lflARD 152 (162)
..||+-|+
T Consensus 180 --~~l~a~~~ 187 (271)
T PF13230_consen 180 --ERLFAHRY 187 (271)
T ss_dssp --S-EEEEEE
T ss_pred --ceEEEEEc
Confidence 68888887
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=62.42 E-value=17 Score=33.27 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=40.9
Q ss_pred CChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceee-cCCcEEEEEcceecCHHHHHHHh---CC-CCCC
Q 031302 29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFC-GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGS 103 (162)
Q Consensus 29 ~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~ 103 (162)
..|.++.+.|....- ..+ -+.+|+.|..-+ -..++.+. +.---++|.||||.|+.-.|+-+ |. .++.
T Consensus 183 ~~p~~V~~~y~dl~~-~~~------~s~~~l~HsRFS-TNT~p~W~~AHPfr~lvHNGEInT~~gN~nwm~ar~~~~~s~ 254 (371)
T COG0067 183 GLPEDVAEFYLDLDD-ERY------KSAIALVHTRFS-TNTFPSWPLAHPFRLLVHNGEINTYGGNRNWLEARGYKFESP 254 (371)
T ss_pred cCHHHHHHHHhhccc-hhh------ceeEEEEEeccC-CCCCCCCCccCcceeeeecceecccccHHHHHHHhhcccccC
Confidence 456677774443222 111 134666665543 11222222 11122459999999999877654 43 4666
Q ss_pred chHHHHHHHH
Q 031302 104 NEAMFVIEAY 113 (162)
Q Consensus 104 sE~eviieaY 113 (162)
+++|++-+++
T Consensus 255 ~~~e~~a~l~ 264 (371)
T COG0067 255 TDGEVLAKLL 264 (371)
T ss_pred ccHHHHHHHH
Confidence 6666655544
No 51
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=38.18 E-value=24 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.5
Q ss_pred cEEEEEEECCCCeEEEEecCCCccccccC
Q 031302 134 SFGFVLYDCKAGTIFAALASPLNSFVFSL 162 (162)
Q Consensus 134 mFAF~iyD~~~~~lflARD~~G~k~~~~~ 162 (162)
--+-++.|.++|+|+.++|.+.+.|.|||
T Consensus 38 a~~aiviD~~sGkVLy~kn~d~~~~pASl 66 (389)
T COG1686 38 AKAAIVIDADSGKVLYSKNADARRPPASL 66 (389)
T ss_pred cceEEEEECCCCcEeeccCCCCCCCccHH
Confidence 45778999999999999999999999985
No 52
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=36.83 E-value=26 Score=28.98 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.1
Q ss_pred cCCcEEEEEcceecCHHHHH
Q 031302 75 GLHNVYCMFMGSLNNLSSLN 94 (162)
Q Consensus 75 ~~~~i~~vFNGeIyN~~eLr 94 (162)
..|++.+||||+|=|=..+.
T Consensus 31 ~LDRisLV~~gqiinK~~Ia 50 (168)
T TIGR03823 31 LLDRISLVFRGQIINKESIS 50 (168)
T ss_pred hhhheeeeecceeecHHHHH
Confidence 35899999999999987765
No 53
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=36.43 E-value=27 Score=28.92 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.1
Q ss_pred cCCcEEEEEcceecCHHHHH
Q 031302 75 GLHNVYCMFMGSLNNLSSLN 94 (162)
Q Consensus 75 ~~~~i~~vFNGeIyN~~eLr 94 (162)
..|++.+||||+|=|=..+.
T Consensus 31 ~LDRisLV~~gqiinK~~Ia 50 (169)
T PRK11582 31 LLDRITLVFRGQIINKIAIS 50 (169)
T ss_pred chhheeeeecceeecHHHHH
Confidence 35899999999999987765
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.67 E-value=1e+02 Score=23.79 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=31.6
Q ss_pred hHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcce
Q 031302 31 PEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRW 72 (162)
Q Consensus 31 ~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~ 72 (162)
+++.++.+...+. |+++++-+..+-+||=+.+-. ..+|.+
T Consensus 2 ~~~~~~~lk~~~v-~si~i~a~~h~g~ayYPt~~~-~~hp~L 41 (132)
T PF14871_consen 2 PEQFVDTLKEAHV-NSITIFAKCHGGYAYYPTKVG-PRHPGL 41 (132)
T ss_pred HHHHHHHHHHhCC-CEEEEEcccccEEEEccCCCC-cCCCCC
Confidence 6789999999999 999999986666999887753 444433
No 55
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=31.54 E-value=74 Score=28.96 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=26.8
Q ss_pred CCchHHHHHHHHHHhHh-----cCCCchhhhhhc-cC--ccEEEEEE
Q 031302 102 GSNEAMFVIEAYRTLRD-----RGPYPAHQVLRD-LD--GSFGFVLY 140 (162)
Q Consensus 102 s~sE~eviieaY~~~~d-----rGpyp~~~~l~~-L~--GmFAF~iy 140 (162)
+.-|.++|+-+-++.|. .||+|+|-+... .+ +-...+.|
T Consensus 220 G~EE~diI~Paie~aR~~Gi~~~GPlpADT~F~~~~~~~~DavlaMY 266 (332)
T COG1995 220 GREEIDIIIPAIEEARAEGIDLVGPLPADTLFHPAYLANYDAVLAMY 266 (332)
T ss_pred CchhHHHHHHHHHHHHHhCCcccCCCCcchhhhhhhhccCCEEEEee
Confidence 56788888889988886 789999875543 22 34444444
No 56
>PF05357 Phage_Coat_A: Phage Coat Protein A; InterPro: IPR008021 The G3P protein (also known as attachment protein or coat protein A) of filamentous phage such as M13, phage fd and phage f1, is an essential coat protein for the infection of Escherichia coli. The G3P protein consists of three domains: two N-terminal domains (N1 and N2) with a similar beta-barrel fold, and a C-terminal domain []. The N-terminal domains protrude from the phage surface, while the C-terminal domain acts as an anchor embedded in the phage coat, together forming a horseshoe-like structure []. The G3P protein exists as 3-5 copies at the tip of the phage particle. Infection by filamentous phage involves two distinct cellular receptors, the F' pilus and the periplasmic protein TolA, which are bound sequentially []. The N2 domain binds the F' pilus, causing a conformational change which allows the N1 domain to bind the C-terminal domain of TolA as a co-receptor. This entry represents the two N-terminal domains, N1 and N2, of G3P.; PDB: 1G3P_A 1TOL_A 3KNQ_A 3DGS_A 2G3P_A 1FGP_A 2X9B_B 2X9A_A 4EO1_A.
Probab=29.86 E-value=34 Score=24.15 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.0
Q ss_pred cceeecCCcEEEEEcceecCH
Q 031302 70 QRWFCGLHNVYCMFMGSLNNL 90 (162)
Q Consensus 70 ~~~f~~~~~i~~vFNGeIyN~ 90 (162)
+..|...++.+..|+|.||++
T Consensus 36 ~N~~k~~~~ry~n~~Gc~y~a 56 (63)
T PF05357_consen 36 SNVFKFDNTRYANYEGCIYEA 56 (63)
T ss_dssp SS-EEETTEEEEEETTEEEEE
T ss_pred cceeecCCceEEEecCeEEEE
Confidence 466777888999999999975
No 57
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=28.83 E-value=44 Score=28.16 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=15.4
Q ss_pred cEEEEEEECCCCeEEEEecCCCcccc
Q 031302 134 SFGFVLYDCKAGTIFAALASPLNSFV 159 (162)
Q Consensus 134 mFAF~iyD~~~~~lflARD~~G~k~~ 159 (162)
-+||++||-.++ +|.|.|-|
T Consensus 177 ~vaFAVWdG~~~------er~g~K~v 196 (205)
T TIGR03477 177 KVAFAVWNGGNA------ERSGLKSV 196 (205)
T ss_pred EEEEEEEcCCcc------cccCccee
Confidence 689999998876 46677654
No 58
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=27.56 E-value=49 Score=24.03 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHhcCCCchhhhhhccCc
Q 031302 107 MFVIEAYRTLRDRGPYPAHQVLRDLDG 133 (162)
Q Consensus 107 eviieaY~~~~drGpyp~~~~l~~L~G 133 (162)
.-|.+....|.+|+.||.+ ++++|++
T Consensus 96 ~ki~kll~iW~~~~iF~~~-~i~~L~~ 121 (121)
T smart00582 96 KKIRRLLNIWEERGIFPPS-VLRPLRE 121 (121)
T ss_pred HHHHHHHHHHhcCCCCCHH-HHHHhhC
Confidence 3467888889999999965 7777763
No 59
>PRK06764 hypothetical protein; Provisional
Probab=26.85 E-value=54 Score=24.92 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=16.2
Q ss_pred ceeecCCcEEEEEcceecC
Q 031302 71 RWFCGLHNVYCMFMGSLNN 89 (162)
Q Consensus 71 ~~f~~~~~i~~vFNGeIyN 89 (162)
-.|+.-+.+++--||.|||
T Consensus 78 i~f~kpg~yvirvngciy~ 96 (105)
T PRK06764 78 IRFSKPGKYVIRVNGCIYN 96 (105)
T ss_pred EEecCCccEEEEEccEEee
Confidence 4577778899999999998
No 60
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.37 E-value=2.2e+02 Score=19.41 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecC
Q 031302 104 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153 (162)
Q Consensus 104 sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~ 153 (162)
+|.+-+++.++++|..|- + .-.-+ +.||...+++++..|.
T Consensus 12 ~~p~~l~~~lr~~RR~g~------i---~~~vs-i~~~~~~~ei~I~tD~ 51 (63)
T PF04566_consen 12 SDPEELVKTLRNLRRSGK------I---SKEVS-IVYDIREKEIRINTDA 51 (63)
T ss_dssp SSHHHHHHHHHHHHHTTS------S----TTSE-EEEETTTTEEEEE-SS
T ss_pred cCHHHHHHHHHHHhhccC------C---cceeE-EEEeccCCEEEEEccC
Confidence 355667889999987662 1 12223 4599999999999884
No 61
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=25.30 E-value=65 Score=28.98 Aligned_cols=37 Identities=30% Similarity=0.620 Sum_probs=27.2
Q ss_pred CCchHHHHHHHHHHhHh-----cCCCchhhhh-hccCccEEEE
Q 031302 102 GSNEAMFVIEAYRTLRD-----RGPYPAHQVL-RDLDGSFGFV 138 (162)
Q Consensus 102 s~sE~eviieaY~~~~d-----rGpyp~~~~l-~~L~GmFAF~ 138 (162)
++-|.++|+.|.++++. .||+|+|-+. +..+|.|-.+
T Consensus 220 G~EE~~iI~PAi~~~~~~G~~v~GP~paDt~F~~~~~~~~D~v 262 (326)
T PRK03371 220 GDEEIRIVTPAIEAMRAKGMDVYGPCPPDTVFLQAYEGQYDMV 262 (326)
T ss_pred cHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCCEE
Confidence 46899999999999874 6899998754 3445555433
No 62
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=24.35 E-value=1.1e+02 Score=21.51 Aligned_cols=13 Identities=15% Similarity=-0.110 Sum_probs=8.2
Q ss_pred CeEEEEecCCCcc
Q 031302 145 GTIFAALASPLNS 157 (162)
Q Consensus 145 ~~lflARD~~G~k 157 (162)
+..+..+|++|..
T Consensus 103 ~~~~~f~DPdG~~ 115 (123)
T cd08351 103 GRGVYFLDPDGHL 115 (123)
T ss_pred eeEEEEECCCCCE
Confidence 3556667777764
No 63
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=23.51 E-value=48 Score=21.92 Aligned_cols=22 Identities=5% Similarity=0.249 Sum_probs=18.9
Q ss_pred cCCcEEEEEcceecCHHHHHHH
Q 031302 75 GLHNVYCMFMGSLNNLSSLNKQ 96 (162)
Q Consensus 75 ~~~~i~~vFNGeIyN~~eLr~q 96 (162)
..++.+++.+|.|||+.....+
T Consensus 12 ~~~~~~v~i~g~VYDvt~~~~~ 33 (76)
T PF00173_consen 12 KKGDCWVIIDGKVYDVTDFLDR 33 (76)
T ss_dssp ETTEEEEEETTEEEECTTTTTT
T ss_pred CCCCEEEEECCEEccccccccc
Confidence 5578999999999999997655
No 64
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=22.85 E-value=1.6e+02 Score=22.53 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEE
Q 031302 105 EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150 (162)
Q Consensus 105 E~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflA 150 (162)
|+++=|.+|+++|| ++ |.|.+++= ..++.++|
T Consensus 10 Ete~EL~LYrEYrD--------Vv----~lF~yvVE--TeRRFYLa 41 (101)
T PF10611_consen 10 ETEMELALYREYRD--------VV----GLFSYVVE--TERRFYLA 41 (101)
T ss_pred hhHHHHHHHHHHHH--------HH----hheeeEEE--eeeeeEee
Confidence 34444699999983 44 78899885 44666665
No 65
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=22.15 E-value=81 Score=28.40 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=26.5
Q ss_pred CCchHHHHHHHHHHhHh-----cCCCchhhhhhc-cCccEEE
Q 031302 102 GSNEAMFVIEAYRTLRD-----RGPYPAHQVLRD-LDGSFGF 137 (162)
Q Consensus 102 s~sE~eviieaY~~~~d-----rGpyp~~~~l~~-L~GmFAF 137 (162)
++-|.++|+-|.++++. .||+|+|-+..+ .+|.|-.
T Consensus 217 G~EE~~iI~PAi~~~~~~Gi~v~GP~paDt~F~~~~~~~~D~ 258 (329)
T PRK01909 217 GREEIDVIEPALARARAAGIDARGPYPADTLFQPRYLEDADC 258 (329)
T ss_pred cHHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCCCE
Confidence 46789999999999875 689999875543 4555533
No 66
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=21.83 E-value=64 Score=24.94 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=19.2
Q ss_pred cCCcEEEEEcceecCHHHHHHHh
Q 031302 75 GLHNVYCMFMGSLNNLSSLNKQY 97 (162)
Q Consensus 75 ~~~~i~~vFNGeIyN~~eLr~q~ 97 (162)
..++.+++.+|.+||....-.+.
T Consensus 17 ~~~d~Wvii~gkVYDvT~Fl~eH 39 (124)
T KOG0537|consen 17 KKDDCWVIIHGKVYDVTSFLDEH 39 (124)
T ss_pred CCCCeEEEECCEEEeccchhhhC
Confidence 45789999999999998877653
No 67
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=20.99 E-value=69 Score=23.51 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.2
Q ss_pred CCcEEEEEcceecCHHH
Q 031302 76 LHNVYCMFMGSLNNLSS 92 (162)
Q Consensus 76 ~~~i~~vFNGeIyN~~e 92 (162)
++.++|.|||.+|+..-
T Consensus 16 nGpaYiA~~G~VYDvS~ 32 (81)
T COG4892 16 NGPAYIAVNGTVYDVSL 32 (81)
T ss_pred CCCeEEEECCEEEeecc
Confidence 45789999999999754
No 68
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=20.65 E-value=2.2e+02 Score=24.82 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=47.4
Q ss_pred EEEEcc--eecCHHHHHHHhCC-CCCCchHHHHHHHHHHhHhcCCCchhhhhhccC-------c-cEEEEEEECCCCeEE
Q 031302 80 YCMFMG--SLNNLSSLNKQYGL-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLD-------G-SFGFVLYDCKAGTIF 148 (162)
Q Consensus 80 ~~vFNG--eIyN~~eLr~q~G~-~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~-------G-mFAF~iyD~~~~~lf 148 (162)
...||| .|||+.-..+-+-- ..+..+.+-++++.+. ++|-. +++++++. | =+++.+||++.++|+
T Consensus 92 a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS~--ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~ 167 (234)
T KOG0876|consen 92 APKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGSL--EEFVKELNAAAAAVFGSGWLWLVYNKELKKLF 167 (234)
T ss_pred hhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcCH--HHHHHHHHHHHHhhcCCceEEEEEcCCCCeEE
Confidence 455664 79999988887621 2233344446677764 56643 55666653 3 489999999999999
Q ss_pred EEecCC
Q 031302 149 AALASP 154 (162)
Q Consensus 149 lARD~~ 154 (162)
+.+-..
T Consensus 168 i~~T~N 173 (234)
T KOG0876|consen 168 ILTTYN 173 (234)
T ss_pred EEecCC
Confidence 987544
No 69
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=20.25 E-value=1.3e+02 Score=23.52 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.3
Q ss_pred hhhhccCccEEEEEEECCCCeEEEEe
Q 031302 126 QVLRDLDGSFGFVLYDCKAGTIFAAL 151 (162)
Q Consensus 126 ~~l~~L~GmFAF~iyD~~~~~lflAR 151 (162)
+.+-+++|.||-+.||+.+++|...|
T Consensus 102 ~~l~~~~~~ya~lf~D~~~n~v~air 127 (141)
T PF14504_consen 102 RPLVKFDGIYAQLFYDQHTNKVTAIR 127 (141)
T ss_pred ceeEEeCCEEEEEEEEccCCEEEEEE
Confidence 46677799999999999999998765
No 70
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=20.19 E-value=95 Score=28.05 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHhHh-----cCCCchhhhhhc-cCccE
Q 031302 102 GSNEAMFVIEAYRTLRD-----RGPYPAHQVLRD-LDGSF 135 (162)
Q Consensus 102 s~sE~eviieaY~~~~d-----rGpyp~~~~l~~-L~GmF 135 (162)
++-|.++|+.|.++++. .||+|+|-+..+ .+|.|
T Consensus 226 G~EE~~iI~PAI~~~~~~Gi~v~GP~paDt~F~~~~~~~~ 265 (336)
T PRK05312 226 GREDIDIIAPAIEQLRAEGIDARGPLPADTMFHAAARATY 265 (336)
T ss_pred cHHHHHHHHHHHHHHHHCCCCccCCCCchhhcccccccCC
Confidence 47789999999999874 689999875543 34444
No 71
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=20.11 E-value=1e+02 Score=27.55 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=25.8
Q ss_pred CCchHHHHHHHHHHhHh-----cCCCchhhhhh-ccCccEE
Q 031302 102 GSNEAMFVIEAYRTLRD-----RGPYPAHQVLR-DLDGSFG 136 (162)
Q Consensus 102 s~sE~eviieaY~~~~d-----rGpyp~~~~l~-~L~GmFA 136 (162)
++-|.++|..|.++++. .||+|+|-+.. ..+|.|-
T Consensus 214 G~EE~~iI~PAI~~~~~~G~~v~GP~paDt~F~~~~~~~~D 254 (320)
T TIGR00557 214 GREEIDIIIPALEALRAEGIDLIGPLPADTLFHPAALAKYD 254 (320)
T ss_pred cHHHHHHHHHHHHHHHHCCCcccCCCCchhhcccccccCCC
Confidence 46788899999999875 68999987544 3445443
Done!