Query 031304
Match_columns 162
No_of_seqs 188 out of 1301
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puf_A HOX-1.7, homeobox prote 99.8 2.6E-21 9E-26 130.3 8.4 72 9-85 2-73 (77)
2 2dms_A Homeobox protein OTX2; 99.8 4.5E-21 1.5E-25 130.0 8.0 66 18-88 5-70 (80)
3 2dmq_A LIM/homeobox protein LH 99.8 5.8E-21 2E-25 129.3 8.4 67 18-89 5-71 (80)
4 2dmt_A Homeobox protein BARH-l 99.8 6.6E-21 2.2E-25 129.2 8.4 65 16-85 13-77 (80)
5 3a01_A Homeodomain-containing 99.8 7.9E-21 2.7E-25 132.5 8.6 78 7-90 5-82 (93)
6 2da3_A Alpha-fetoprotein enhan 99.8 4.9E-21 1.7E-25 129.5 7.3 66 15-85 12-77 (80)
7 1nk2_P Homeobox protein VND; h 99.8 5.9E-21 2E-25 128.6 7.7 68 14-86 3-70 (77)
8 2dmu_A Homeobox protein goosec 99.8 9.4E-21 3.2E-25 125.3 8.1 63 18-85 5-67 (70)
9 2l7z_A Homeobox protein HOX-A1 99.8 9.7E-21 3.3E-25 126.4 8.1 66 17-87 4-69 (73)
10 2da1_A Alpha-fetoprotein enhan 99.8 6.7E-21 2.3E-25 125.9 6.8 64 17-85 4-67 (70)
11 2cra_A Homeobox protein HOX-B1 99.8 4.6E-21 1.6E-25 126.8 5.7 64 17-85 4-67 (70)
12 2vi6_A Homeobox protein nanog; 99.8 4.5E-21 1.6E-25 124.0 5.4 60 19-83 2-61 (62)
13 1zq3_P PRD-4, homeotic bicoid 99.8 1.4E-20 4.7E-25 123.9 7.8 64 20-88 2-65 (68)
14 2h1k_A IPF-1, pancreatic and d 99.8 9.6E-21 3.3E-25 122.9 6.9 60 20-84 3-62 (63)
15 2da2_A Alpha-fetoprotein enhan 99.8 7.2E-21 2.5E-25 125.7 6.3 64 17-85 4-67 (70)
16 2da4_A Hypothetical protein DK 99.8 8.9E-21 3E-25 128.5 6.7 68 15-87 3-74 (80)
17 2cue_A Paired box protein PAX6 99.8 1.2E-20 4.1E-25 128.0 7.2 64 18-86 5-68 (80)
18 2hdd_A Protein (engrailed home 99.8 1E-20 3.5E-25 122.0 6.4 58 20-82 3-60 (61)
19 1ahd_P Antennapedia protein mu 99.8 1.4E-20 4.8E-25 124.0 7.0 63 20-87 2-64 (68)
20 2kt0_A Nanog, homeobox protein 99.8 1.3E-20 4.5E-25 128.6 7.1 65 16-85 18-82 (84)
21 1fjl_A Paired protein; DNA-bin 99.8 1.5E-20 5E-25 127.7 7.3 65 16-85 14-78 (81)
22 1ftt_A TTF-1 HD, thyroid trans 99.8 2.3E-20 8E-25 122.8 7.8 63 20-87 2-64 (68)
23 2e1o_A Homeobox protein PRH; D 99.8 2.4E-20 8.1E-25 123.4 7.8 62 19-85 6-67 (70)
24 1ig7_A Homeotic protein MSX-1; 99.8 1.5E-20 5.2E-25 119.8 6.5 57 21-82 1-57 (58)
25 1b8i_A Ultrabithorax, protein 99.8 1.6E-20 5.6E-25 127.7 7.0 66 15-85 15-80 (81)
26 1jgg_A Segmentation protein EV 99.8 1.8E-20 6.2E-25 120.4 6.8 58 21-83 2-59 (60)
27 1bw5_A ISL-1HD, insulin gene e 99.8 1.7E-20 5.7E-25 122.7 6.0 61 20-85 3-63 (66)
28 2djn_A Homeobox protein DLX-5; 99.8 9.4E-21 3.2E-25 125.3 4.9 63 17-84 4-66 (70)
29 1yz8_P Pituitary homeobox 2; D 99.8 1.1E-20 3.8E-25 124.3 5.1 64 19-87 2-65 (68)
30 2m0c_A Homeobox protein arista 99.8 4.3E-20 1.5E-24 123.3 7.7 66 17-87 6-71 (75)
31 2k40_A Homeobox expressed in E 99.8 3.5E-20 1.2E-24 121.5 6.7 62 20-86 1-62 (67)
32 1wh5_A ZF-HD homeobox family p 99.8 2E-20 7E-25 127.1 5.7 61 17-82 14-78 (80)
33 1uhs_A HOP, homeodomain only p 99.8 8.8E-20 3E-24 121.3 8.3 62 21-87 2-64 (72)
34 2cuf_A FLJ21616 protein; homeo 99.8 6.5E-20 2.2E-24 128.1 8.0 66 17-87 4-84 (95)
35 2hi3_A Homeodomain-only protei 99.8 1.1E-19 3.6E-24 121.2 8.3 62 21-87 3-65 (73)
36 2r5y_A Homeotic protein sex co 99.8 3.2E-20 1.1E-24 128.0 5.8 64 16-84 24-87 (88)
37 3a02_A Homeobox protein arista 99.8 4.8E-20 1.6E-24 118.4 5.6 57 23-84 2-58 (60)
38 3rkq_A Homeobox protein NKX-2. 99.8 7.4E-20 2.5E-24 116.2 6.3 57 20-81 2-58 (58)
39 1akh_A Protein (mating-type pr 99.8 4.6E-20 1.6E-24 118.7 5.3 59 18-81 3-61 (61)
40 1wh7_A ZF-HD homeobox family p 99.8 3.5E-20 1.2E-24 126.1 4.9 62 15-82 12-78 (80)
41 1b72_A Protein (homeobox prote 99.8 9.2E-20 3.1E-24 127.8 6.9 65 17-86 31-95 (97)
42 2dn0_A Zinc fingers and homeob 99.8 9.8E-20 3.3E-24 122.3 6.7 64 18-86 6-69 (76)
43 3a03_A T-cell leukemia homeobo 99.8 1.2E-19 4E-24 115.2 6.1 54 25-83 2-55 (56)
44 2da5_A Zinc fingers and homeob 99.8 2.5E-19 8.6E-24 120.1 8.1 62 21-87 8-69 (75)
45 2ly9_A Zinc fingers and homeob 99.8 2.6E-19 8.8E-24 119.4 7.4 63 19-86 5-67 (74)
46 3nar_A ZHX1, zinc fingers and 99.8 1.4E-19 4.6E-24 126.8 6.0 65 15-84 20-84 (96)
47 2ecc_A Homeobox and leucine zi 99.8 2.1E-19 7.3E-24 120.9 6.4 61 22-87 5-65 (76)
48 1puf_B PRE-B-cell leukemia tra 99.8 3.8E-19 1.3E-23 118.4 7.5 63 20-87 1-66 (73)
49 1x2n_A Homeobox protein pknox1 99.8 5.8E-19 2E-23 117.5 8.1 63 18-85 5-70 (73)
50 2da6_A Hepatocyte nuclear fact 99.8 9.1E-19 3.1E-23 123.8 7.8 70 17-87 3-89 (102)
51 2dmn_A Homeobox protein TGIF2L 99.8 2.2E-18 7.5E-23 117.7 8.7 65 19-88 6-73 (83)
52 1du6_A PBX1, homeobox protein 99.8 3.3E-19 1.1E-23 115.8 4.0 58 20-82 3-63 (64)
53 1b72_B Protein (PBX1); homeodo 99.8 1.1E-18 3.9E-23 119.7 6.9 62 20-86 1-65 (87)
54 2ecb_A Zinc fingers and homeob 99.8 1.5E-18 5.1E-23 120.2 7.1 57 26-87 17-73 (89)
55 1k61_A Mating-type protein alp 99.8 1.4E-18 4.9E-23 111.3 6.4 56 23-83 1-59 (60)
56 1lfb_A Liver transcription fac 99.7 4.2E-19 1.4E-23 125.2 3.8 69 17-86 6-91 (99)
57 2cqx_A LAG1 longevity assuranc 99.7 4.5E-19 1.5E-23 118.2 3.3 59 21-84 9-68 (72)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 1.1E-18 3.7E-23 130.9 5.7 64 15-83 82-145 (146)
59 1wi3_A DNA-binding protein SAT 99.7 1.9E-18 6.6E-23 113.2 5.9 60 16-80 3-63 (71)
60 2dmp_A Zinc fingers and homeob 99.7 8.4E-18 2.9E-22 116.2 9.2 59 25-88 18-76 (89)
61 1e3o_C Octamer-binding transcr 99.7 1.9E-18 6.7E-23 131.2 5.8 62 17-83 98-159 (160)
62 1mnm_C Protein (MAT alpha-2 tr 99.7 4.6E-18 1.6E-22 116.8 6.9 58 19-81 26-86 (87)
63 2xsd_C POU domain, class 3, tr 99.7 2.1E-18 7.2E-23 131.7 5.2 65 17-86 96-160 (164)
64 3d1n_I POU domain, class 6, tr 99.7 4.9E-18 1.7E-22 127.8 7.2 62 16-82 89-150 (151)
65 2l9r_A Homeobox protein NKX-3. 99.7 3.1E-18 1.1E-22 113.3 4.8 57 25-86 9-65 (69)
66 1le8_B Mating-type protein alp 99.7 6.9E-18 2.4E-22 115.1 6.2 58 21-83 3-63 (83)
67 3nau_A Zinc fingers and homeob 99.7 8.8E-18 3E-22 109.8 5.8 51 28-83 12-62 (66)
68 2e19_A Transcription factor 8; 99.7 1.4E-17 4.9E-22 108.5 4.8 54 24-82 7-60 (64)
69 3l1p_A POU domain, class 5, tr 99.7 1.2E-17 4.2E-22 126.2 5.0 61 18-83 94-154 (155)
70 1x2m_A LAG1 longevity assuranc 99.7 1.1E-17 3.9E-22 109.0 3.4 50 29-83 9-59 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 2.3E-17 7.7E-22 125.5 4.9 64 17-85 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 2.8E-16 9.5E-21 103.1 5.4 56 26-86 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.5E-16 5E-21 124.5 2.9 62 16-82 111-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.5 4.5E-15 1.5E-19 117.7 5.4 65 15-80 137-218 (221)
75 2lk2_A Homeobox protein TGIF1; 99.4 8.2E-14 2.8E-18 96.1 5.4 56 25-85 10-68 (89)
76 2da7_A Zinc finger homeobox pr 99.4 9.3E-14 3.2E-18 91.4 5.1 46 29-79 14-59 (71)
77 1mh3_A Maltose binding-A1 home 99.3 3E-13 1E-17 113.6 3.7 56 21-81 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 2.6E-09 9E-14 61.9 0.2 20 67-86 1-20 (37)
79 2ys9_A Homeobox and leucine zi 94.0 0.042 1.5E-06 35.6 3.0 39 32-75 18-56 (70)
80 2glo_A Brinker CG9653-PA; prot 84.2 1.4 4.7E-05 26.5 3.9 47 24-76 3-49 (59)
81 2elh_A CG11849-PA, LD40883P; s 84.1 2.1 7.3E-05 27.8 5.1 45 21-75 17-61 (87)
82 1hlv_A CENP-B, major centromer 81.0 2.3 8E-05 29.2 4.7 50 23-80 4-53 (131)
83 1tc3_C Protein (TC3 transposas 80.1 3 0.0001 22.8 4.2 40 26-75 5-44 (51)
84 3hug_A RNA polymerase sigma fa 80.0 2.9 9.8E-05 27.2 4.6 48 26-83 37-84 (92)
85 2o8x_A Probable RNA polymerase 76.1 3.8 0.00013 24.7 4.1 47 26-82 15-61 (70)
86 1jko_C HIN recombinase, DNA-in 70.6 1.9 6.6E-05 24.2 1.5 41 26-76 5-45 (52)
87 1ku3_A Sigma factor SIGA; heli 69.4 7.5 0.00026 23.9 4.3 46 26-81 10-59 (73)
88 1s7o_A Hypothetical UPF0122 pr 68.7 7.5 0.00026 26.6 4.6 48 26-83 22-69 (113)
89 3c57_A Two component transcrip 66.8 9.5 0.00032 25.0 4.6 46 26-82 27-72 (95)
90 2jn6_A Protein CGL2762, transp 66.8 6.8 0.00023 25.5 3.9 42 24-74 3-45 (97)
91 2p7v_B Sigma-70, RNA polymeras 66.1 6 0.0002 24.0 3.3 50 26-81 5-54 (68)
92 3mzy_A RNA polymerase sigma-H 66.0 8.1 0.00028 26.6 4.4 47 26-83 109-155 (164)
93 2qko_A Possible transcriptiona 65.3 3.8 0.00013 29.7 2.6 44 32-81 34-77 (215)
94 1fse_A GERE; helix-turn-helix 62.9 13 0.00045 22.3 4.5 45 24-79 9-53 (74)
95 1je8_A Nitrate/nitrite respons 62.7 9.8 0.00034 24.2 4.0 45 25-80 20-64 (82)
96 1p4w_A RCSB; solution structur 62.0 15 0.0005 24.6 4.9 45 24-79 32-76 (99)
97 1tty_A Sigma-A, RNA polymerase 61.3 9.5 0.00032 24.4 3.7 46 26-81 18-67 (87)
98 1xsv_A Hypothetical UPF0122 pr 58.1 11 0.00038 25.6 3.8 48 26-83 25-72 (113)
99 1iuf_A Centromere ABP1 protein 56.5 33 0.0011 24.1 6.2 52 21-76 6-60 (144)
100 3nxc_A HTH-type protein SLMA; 56.5 3.9 0.00013 29.2 1.2 35 38-78 37-71 (212)
101 1fi6_A EH domain protein REPS1 53.3 16 0.00054 23.3 3.8 46 25-74 1-50 (92)
102 1u78_A TC3 transposase, transp 53.0 18 0.0006 24.5 4.2 42 25-76 5-46 (141)
103 1k78_A Paired box protein PAX5 52.8 23 0.00079 24.5 4.9 42 25-76 31-72 (149)
104 1or7_A Sigma-24, RNA polymeras 52.6 18 0.0006 25.8 4.3 48 27-84 141-188 (194)
105 1x3u_A Transcriptional regulat 52.5 11 0.00037 23.2 2.8 43 27-80 17-59 (79)
106 2rnj_A Response regulator prot 52.1 11 0.00037 24.3 2.8 45 25-80 28-72 (91)
107 1rp3_A RNA polymerase sigma fa 52.0 16 0.00054 26.9 4.1 48 26-83 187-234 (239)
108 2rn7_A IS629 ORFA; helix, all 51.3 14 0.00048 24.3 3.4 47 24-74 4-52 (108)
109 3ulq_B Transcriptional regulat 50.4 30 0.001 22.4 4.8 44 21-75 24-67 (90)
110 2q24_A Putative TETR family tr 50.4 6.5 0.00022 27.9 1.6 42 31-79 20-61 (194)
111 2x48_A CAG38821; archeal virus 49.3 15 0.00053 20.9 2.9 39 26-74 13-53 (55)
112 3q0w_A HTH-type transcriptiona 47.5 7.4 0.00025 28.8 1.6 41 34-80 52-92 (236)
113 3fiw_A Putative TETR-family tr 47.0 10 0.00036 28.0 2.4 56 20-81 18-74 (211)
114 2k27_A Paired box protein PAX- 45.7 61 0.0021 22.6 6.3 41 25-75 24-64 (159)
115 3g1o_A Transcriptional regulat 45.3 10 0.00035 28.3 2.1 42 32-79 49-90 (255)
116 3dcf_A Transcriptional regulat 41.6 10 0.00035 27.0 1.5 40 33-78 38-77 (218)
117 1pdn_C Protein (PRD paired); p 41.4 35 0.0012 22.3 4.2 41 26-76 17-57 (128)
118 2fq4_A Transcriptional regulat 40.2 13 0.00046 26.2 2.0 41 34-80 20-60 (192)
119 3bni_A Putative TETR-family tr 40.0 15 0.00051 26.9 2.2 39 34-78 51-89 (229)
120 3kz9_A SMCR; transcriptional r 39.9 17 0.00057 25.5 2.4 39 34-78 25-63 (206)
121 2q0o_A Probable transcriptiona 39.3 42 0.0014 25.2 4.8 45 24-79 173-217 (236)
122 2np3_A Putative TETR-family re 38.8 6.2 0.00021 28.5 -0.1 41 32-78 36-76 (212)
123 2i10_A Putative TETR transcrip 38.5 20 0.00068 25.7 2.7 45 31-81 16-60 (202)
124 2zcx_A SCO7815, TETR-family tr 38.3 9.5 0.00033 28.4 0.9 42 33-80 30-71 (231)
125 2iai_A Putative transcriptiona 37.6 15 0.00051 26.9 1.9 43 31-79 35-77 (230)
126 2hxo_A Putative TETR-family tr 37.3 31 0.001 25.9 3.7 53 21-79 10-63 (237)
127 3i5g_B Myosin regulatory light 36.4 72 0.0025 22.0 5.4 41 23-67 6-50 (153)
128 1c07_A Protein (epidermal grow 35.7 24 0.00082 22.6 2.5 46 25-74 2-51 (95)
129 2qwt_A Transcriptional regulat 35.7 17 0.00059 25.8 1.9 40 33-79 20-59 (196)
130 3bd1_A CRO protein; transcript 35.2 15 0.00052 22.6 1.4 23 51-77 14-36 (79)
131 2xi8_A Putative transcription 34.8 14 0.00049 21.3 1.2 22 51-76 17-38 (66)
132 1l3l_A Transcriptional activat 34.5 59 0.002 24.3 4.9 45 24-79 171-215 (234)
133 3mvp_A TETR/ACRR transcription 34.1 6.8 0.00023 28.0 -0.6 40 34-79 34-73 (217)
134 3ccy_A Putative TETR-family tr 34.1 20 0.00067 25.5 2.0 41 32-78 20-60 (203)
135 2iu5_A DHAS, YCEG, HTH-type dh 33.8 24 0.00082 24.9 2.4 44 31-80 18-61 (195)
136 2r1j_L Repressor protein C2; p 33.7 16 0.00054 21.3 1.2 23 51-77 21-43 (68)
137 2qtq_A Transcriptional regulat 33.2 20 0.00068 25.3 1.9 43 32-80 22-64 (213)
138 3clo_A Transcriptional regulat 32.4 53 0.0018 25.0 4.4 46 25-81 196-241 (258)
139 3g7r_A Putative transcriptiona 32.2 31 0.0011 24.9 2.9 39 35-79 44-82 (221)
140 3t72_q RNA polymerase sigma fa 32.1 59 0.002 21.5 4.1 51 26-82 19-69 (99)
141 2jpc_A SSRB; DNA binding prote 31.4 22 0.00075 20.6 1.6 40 30-80 2-41 (61)
142 2hin_A GP39, repressor protein 31.4 23 0.00079 22.3 1.8 25 51-79 13-37 (71)
143 1zug_A Phage 434 CRO protein; 31.3 17 0.0006 21.3 1.1 23 51-77 19-41 (71)
144 2lfw_A PHYR sigma-like domain; 31.3 28 0.00094 24.4 2.4 48 26-83 93-140 (157)
145 2wui_A MEXZ, transcriptional r 31.1 33 0.0011 24.5 2.8 39 36-80 21-59 (210)
146 3cwr_A Transcriptional regulat 30.8 20 0.00069 25.1 1.6 40 35-80 26-65 (208)
147 3on2_A Probable transcriptiona 30.5 17 0.00056 25.3 1.1 43 32-80 18-60 (199)
148 2rek_A Putative TETR-family tr 30.5 17 0.00056 25.7 1.1 41 32-79 22-62 (199)
149 2x7l_M HIV REV; nuclear export 30.4 27 0.00092 24.4 2.0 35 34-87 17-51 (115)
150 2q1z_A RPOE, ECF SIGE; ECF sig 30.3 9.9 0.00034 27.0 -0.2 21 62-82 161-181 (184)
151 3bs3_A Putative DNA-binding pr 30.1 19 0.00066 21.5 1.2 23 51-77 26-48 (76)
152 2g7l_A TETR-family transcripti 29.7 26 0.00088 26.5 2.1 54 22-81 14-68 (243)
153 3qbm_A TETR transcriptional re 29.6 22 0.00075 24.7 1.6 42 32-79 13-54 (199)
154 3ppb_A Putative TETR family tr 29.5 27 0.00091 24.1 2.0 43 31-79 14-56 (195)
155 2v57_A TETR family transcripti 29.4 33 0.0011 23.8 2.5 29 47-79 31-59 (190)
156 1sgm_A Putative HTH-type trans 29.3 32 0.0011 23.6 2.4 42 31-78 11-53 (191)
157 1adr_A P22 C2 repressor; trans 29.0 21 0.00072 21.3 1.2 23 51-77 21-43 (76)
158 3dew_A Transcriptional regulat 28.6 20 0.00069 24.9 1.3 42 32-79 14-55 (206)
159 3v6g_A Probable transcriptiona 28.0 19 0.00064 26.2 1.0 40 33-78 21-60 (208)
160 3qp6_A CVIR transcriptional re 27.9 1.4E+02 0.0047 22.9 6.1 45 24-79 195-239 (265)
161 3gzi_A Transcriptional regulat 27.5 32 0.0011 24.4 2.2 40 34-79 25-64 (218)
162 1r69_A Repressor protein CI; g 27.5 23 0.00078 20.6 1.2 23 51-77 17-39 (69)
163 2rae_A Transcriptional regulat 27.5 24 0.00082 24.9 1.5 40 32-77 23-62 (207)
164 2b5a_A C.BCLI; helix-turn-heli 27.3 23 0.00078 21.2 1.2 23 51-77 26-48 (77)
165 3qkx_A Uncharacterized HTH-typ 27.3 31 0.001 23.7 2.0 42 32-79 14-55 (188)
166 2dg8_A Putative TETR-family tr 27.3 22 0.00075 25.0 1.2 45 30-80 13-57 (193)
167 2oer_A Probable transcriptiona 27.2 27 0.00091 25.1 1.7 42 32-79 27-71 (214)
168 2xdn_A HTH-type transcriptiona 27.1 33 0.0011 24.4 2.2 40 34-79 19-58 (210)
169 3lwj_A Putative TETR-family tr 27.1 28 0.00095 24.4 1.8 40 33-78 19-58 (202)
170 3nrg_A TETR family transcripti 27.1 36 0.0012 24.0 2.4 42 32-79 19-60 (217)
171 3knw_A Putative transcriptiona 27.0 27 0.00093 24.6 1.7 41 32-78 20-60 (212)
172 3jsj_A Putative TETR-family tr 26.9 32 0.0011 23.9 2.1 44 30-80 13-56 (190)
173 3him_A Probable transcriptiona 26.8 27 0.00094 24.4 1.7 42 32-79 22-63 (211)
174 3vpr_A Transcriptional regulat 26.8 30 0.001 24.1 1.9 43 32-80 9-51 (190)
175 3bru_A Regulatory protein, TET 26.7 31 0.0011 24.5 2.0 41 32-78 36-76 (222)
176 3kkd_A Transcriptional regulat 26.6 29 0.00098 25.3 1.8 39 35-79 44-82 (237)
177 2hku_A A putative transcriptio 26.5 29 0.001 24.7 1.9 40 34-80 28-67 (215)
178 3qqa_A CMER; alpha-helical, he 26.5 34 0.0012 24.1 2.2 41 32-78 25-65 (216)
179 3rd3_A Probable transcriptiona 26.2 27 0.00094 24.1 1.6 41 32-78 16-56 (197)
180 2np5_A Transcriptional regulat 25.8 19 0.00066 25.7 0.7 42 32-79 15-56 (203)
181 3loc_A HTH-type transcriptiona 25.7 8.3 0.00028 27.4 -1.4 36 37-78 29-64 (212)
182 3b81_A Transcriptional regulat 25.6 29 0.00098 24.2 1.6 42 32-79 17-58 (203)
183 2hyt_A TETR-family transcripti 25.5 41 0.0014 23.7 2.4 42 32-79 18-59 (197)
184 3he0_A Transcriptional regulat 25.4 33 0.0011 23.8 1.9 46 29-80 14-59 (196)
185 2yve_A Transcriptional regulat 25.3 34 0.0012 23.9 2.0 42 32-79 10-51 (185)
186 1t33_A Putative transcriptiona 25.3 27 0.00091 25.0 1.4 42 32-80 18-59 (224)
187 2lv7_A Calcium-binding protein 25.2 1.4E+02 0.0048 19.2 6.0 49 22-74 25-79 (100)
188 1y7y_A C.AHDI; helix-turn-heli 25.0 27 0.00091 20.6 1.2 22 51-76 29-50 (74)
189 2wiu_B HTH-type transcriptiona 25.0 35 0.0012 21.0 1.8 23 51-77 28-50 (88)
190 3kkc_A TETR family transcripti 24.9 27 0.00094 23.9 1.4 43 32-80 18-60 (177)
191 2pmy_A RAS and EF-hand domain- 24.8 33 0.0011 21.4 1.7 47 24-74 18-68 (91)
192 3lhq_A Acrab operon repressor 24.7 31 0.0011 24.2 1.7 42 32-79 20-61 (220)
193 3col_A Putative transcription 24.7 25 0.00086 24.3 1.1 43 31-79 15-57 (196)
194 3szt_A QCSR, quorum-sensing co 24.7 1.1E+02 0.0038 22.9 5.0 42 25-77 174-215 (237)
195 2o7t_A Transcriptional regulat 24.6 29 0.00099 24.4 1.5 42 32-79 14-55 (199)
196 1eh2_A EPS15; calcium binding, 24.5 92 0.0031 20.5 4.0 46 24-73 6-54 (106)
197 3omt_A Uncharacterized protein 24.5 22 0.00075 21.3 0.7 22 51-76 24-45 (73)
198 2a6c_A Helix-turn-helix motif; 24.4 32 0.0011 21.3 1.5 23 51-77 34-56 (83)
199 3aqt_A Bacterial regulatory pr 24.3 31 0.0011 25.5 1.6 42 33-80 53-94 (245)
200 1zk8_A Transcriptional regulat 24.0 26 0.0009 24.2 1.1 43 31-79 13-55 (183)
201 1l0o_C Sigma factor; bergerat 23.9 16 0.00056 26.7 0.0 41 27-77 199-239 (243)
202 3b7h_A Prophage LP1 protein 11 23.9 28 0.00095 20.8 1.1 23 51-77 23-45 (78)
203 3bqz_B HTH-type transcriptiona 23.8 29 0.00099 24.0 1.3 42 31-78 7-48 (194)
204 2kpj_A SOS-response transcript 23.8 28 0.00096 22.1 1.1 24 50-77 24-47 (94)
205 3egq_A TETR family transcripti 23.7 29 0.001 23.6 1.3 41 33-79 11-51 (170)
206 2hxi_A Putative transcriptiona 23.6 29 0.00099 26.1 1.4 51 22-78 24-75 (241)
207 2dg7_A Putative transcriptiona 23.4 26 0.0009 24.5 1.0 41 32-78 13-53 (195)
208 3lsj_A DEST; transcriptional r 23.1 34 0.0012 24.4 1.6 43 32-80 17-60 (220)
209 1pb6_A Hypothetical transcript 23.1 29 0.001 24.4 1.3 41 33-79 25-65 (212)
210 2d6y_A Putative TETR family re 23.1 36 0.0012 24.2 1.7 42 32-79 14-55 (202)
211 2zcm_A Biofilm operon icaabcd 22.9 30 0.001 24.1 1.3 45 30-80 11-55 (192)
212 3on4_A Transcriptional regulat 22.9 29 0.001 23.8 1.2 42 32-79 16-57 (191)
213 3kz3_A Repressor protein CI; f 22.7 25 0.00085 21.6 0.7 23 51-77 28-50 (80)
214 2pz9_A Putative regulatory pro 22.6 17 0.00058 26.5 -0.2 42 32-79 36-77 (226)
215 1rzs_A Antirepressor, regulato 22.5 32 0.0011 20.4 1.1 19 51-73 13-31 (61)
216 2k27_A Paired box protein PAX- 22.4 1.7E+02 0.0058 20.2 5.3 48 24-75 81-134 (159)
217 3pas_A TETR family transcripti 22.4 19 0.00066 24.9 0.1 40 34-79 16-55 (195)
218 3f1b_A TETR-like transcription 22.2 31 0.001 24.0 1.2 40 34-79 22-61 (203)
219 3o9x_A Uncharacterized HTH-typ 22.1 90 0.0031 21.0 3.7 23 51-77 87-109 (133)
220 2ict_A Antitoxin HIGA; helix-t 22.1 34 0.0012 21.6 1.3 23 51-77 24-46 (94)
221 2fd5_A Transcriptional regulat 22.1 42 0.0014 23.0 1.9 42 32-79 13-54 (180)
222 1irz_A ARR10-B; helix-turn-hel 22.0 1.5E+02 0.005 18.3 4.2 59 20-82 3-62 (64)
223 2qib_A TETR-family transcripti 22.0 35 0.0012 24.9 1.5 41 33-79 20-60 (231)
224 2g7s_A Transcriptional regulat 21.8 32 0.0011 23.6 1.2 41 32-78 14-54 (194)
225 3vp5_A Transcriptional regulat 21.7 45 0.0015 23.5 2.0 42 32-79 18-59 (189)
226 3dpj_A Transcription regulator 21.7 40 0.0014 23.4 1.7 42 33-80 15-56 (194)
227 2of7_A Putative TETR-family tr 21.6 39 0.0013 25.2 1.7 41 33-79 55-95 (260)
228 3c2b_A Transcriptional regulat 21.6 35 0.0012 24.3 1.4 44 32-81 21-64 (221)
229 3fmy_A HTH-type transcriptiona 21.5 45 0.0015 20.2 1.8 41 25-77 9-49 (73)
230 2zb9_A Putative transcriptiona 21.4 33 0.0011 24.4 1.2 41 34-80 31-71 (214)
231 2ras_A Transcriptional regulat 21.3 34 0.0012 24.2 1.3 41 34-80 19-59 (212)
232 3vib_A MTRR; helix-turn-helix 21.0 42 0.0014 23.8 1.8 39 35-79 19-57 (210)
233 3c3w_A Two component transcrip 21.0 1.4E+02 0.0047 21.6 4.7 44 25-79 148-191 (225)
234 2k9q_A Uncharacterized protein 21.0 35 0.0012 20.6 1.1 23 51-77 18-40 (77)
235 2w53_A Repressor, SMet; antibi 20.9 41 0.0014 24.0 1.7 43 31-79 16-58 (219)
236 1vi0_A Transcriptional regulat 20.8 34 0.0012 24.4 1.2 42 32-79 14-55 (206)
237 3f0c_A TETR-molecule A, transc 20.8 38 0.0013 23.9 1.5 42 32-79 17-58 (216)
238 2ef8_A C.ECOT38IS, putative tr 20.8 36 0.0012 20.6 1.2 23 51-77 26-48 (84)
239 3c07_A Putative TETR-family tr 20.3 47 0.0016 25.2 2.0 42 33-80 48-89 (273)
240 3anp_C Transcriptional repress 20.3 43 0.0015 23.6 1.7 40 33-78 16-55 (204)
241 4aci_A HTH-type transcriptiona 20.1 25 0.00086 24.4 0.3 41 33-79 21-61 (191)
242 3f6w_A XRE-family like protein 20.1 39 0.0013 20.6 1.2 22 51-76 30-51 (83)
No 1
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=2.6e-21 Score=130.30 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 9 DPFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 9 ~p~~~~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
+|.+...+.+..++.|+.||..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+++|+...
T Consensus 2 ~p~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhh
Confidence 46666677777899999999999999999999996 99999999999999 99999999999999999998764
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.5e-21 Score=129.98 Aligned_cols=66 Identities=29% Similarity=0.472 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCCC
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 88 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~~ 88 (162)
++.+|.|+.|+.+|+.+||.+|+.++ ||+..++++||..| ||++.+|++||||||+|+|+......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 45788999999999999999999996 99999999999999 99999999999999999999776543
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=129.28 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCCCC
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVVP 89 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~~~ 89 (162)
...+|.|+.|+.+|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+|+|++......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~~ 71 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQEN 71 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHhc
Confidence 45688999999999999999999996 99999999999999 999999999999999999998766543
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.6e-21 Score=129.24 Aligned_cols=65 Identities=29% Similarity=0.373 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
..++.+|.|+.|+.+|+.+||.+|+.++ ||+..++++||..| ||++.+|++||||||+|+|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 3456788999999999999999999996 99999999999999 99999999999999999998654
No 5
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=7.9e-21 Score=132.49 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=65.1
Q ss_pred CCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 7 YFDPFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 7 ~~~p~~~~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
++.|.... ..++.++.||.||.+|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 5 ~g~p~~~~-~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 5 IGHPYQNR-TPPKRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCSTTS-CCCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcCCC-CCCCCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHH
Confidence 33443333 3455788999999999999999999996 99999999999999 999999999999999999998876
Q ss_pred CCCC
Q 031304 87 VVPN 90 (162)
Q Consensus 87 ~~~~ 90 (162)
....
T Consensus 79 ~~~~ 82 (93)
T 3a01_A 79 EREA 82 (93)
T ss_dssp C---
T ss_pred HHHH
Confidence 5443
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=4.9e-21 Score=129.47 Aligned_cols=66 Identities=30% Similarity=0.443 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
...++.+|.||.||.+|+.+||.+|..++ ||+..++++||..| ||++.+|++||||||+|+|+...
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 34566788999999999999999999997 99999999999999 99999999999999999998653
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.84 E-value=5.9e-21 Score=128.59 Aligned_cols=68 Identities=25% Similarity=0.337 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 14 SGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 14 ~~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
.+..++.++.|+.||..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 3 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp SCCSCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcc
Confidence 445667788999999999999999999996 99999999999999 999999999999999999986654
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.4e-21 Score=125.27 Aligned_cols=63 Identities=30% Similarity=0.498 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
...+|.|+.|+.+|+.+||.+|+.++ ||+..++++||..| ||++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 34688999999999999999999997 99999999999999 99999999999999999998654
No 9
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.83 E-value=9.7e-21 Score=126.37 Aligned_cols=66 Identities=32% Similarity=0.375 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
....++.|+.|+..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 445688999999999999999999997 99999999999999 9999999999999999999876554
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-21 Score=125.92 Aligned_cols=64 Identities=20% Similarity=0.399 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
....++.|+.||.+|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 345788999999999999999999996 99999999999999 99999999999999999998654
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=4.6e-21 Score=126.84 Aligned_cols=64 Identities=30% Similarity=0.411 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
....++.|+.|+..|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 345688999999999999999999997 99999999999999 99999999999999999988653
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.83 E-value=4.5e-21 Score=123.97 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 19 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 19 ~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
+.++.|+.||..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhc
Confidence 3578899999999999999999996 99999999999999 999999999999999999985
No 13
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-20 Score=123.94 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=60.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCCC
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 88 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~~ 88 (162)
++|.|+.||..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+++|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 578999999999999999999996 99999999999999 99999999999999999999876654
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.83 E-value=9.6e-21 Score=122.88 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
.+|.|+.||..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 578999999999999999999996 99999999999999 9999999999999999999863
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=7.2e-21 Score=125.74 Aligned_cols=64 Identities=20% Similarity=0.398 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
....++.|+.|+.+|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 445688999999999999999999997 99999999999999 99999999999999999998654
No 16
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-21 Score=128.51 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~----~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
+..++.+|.||.||.+|+.+||.+|+.+ + ||+..++++||..| ||++.+|+|||||||+|+|+.....
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCCC
Confidence 3456678999999999999999999999 8 99999999999999 9999999999999999999865443
No 17
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.2e-20 Score=127.96 Aligned_cols=64 Identities=25% Similarity=0.452 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
...+|.|+.|+.+|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 45688999999999999999999996 99999999999999 999999999999999999997654
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.82 E-value=1e-20 Score=121.95 Aligned_cols=58 Identities=28% Similarity=0.532 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
.+|.|+.||.+|+.+||..|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 478999999999999999999997 99999999999999 99999999999999999987
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.82 E-value=1.4e-20 Score=123.96 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
.+|.|+.||..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 478899999999999999999996 99999999999999 9999999999999999999977544
No 20
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=128.61 Aligned_cols=65 Identities=28% Similarity=0.375 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
...+.+|.||.|+..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+|+..+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456788999999999999999999996 99999999999999 99999999999999999998654
No 21
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.82 E-value=1.5e-20 Score=127.74 Aligned_cols=65 Identities=28% Similarity=0.524 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
..++.+|.|+.|+..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+|++..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 3556788999999999999999999996 99999999999999 99999999999999999998753
No 22
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=2.3e-20 Score=122.84 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
.++.|+.||..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 578899999999999999999996 99999999999999 9999999999999999999977654
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=2.4e-20 Score=123.38 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 19 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 19 ~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
..++.|+.|+.+|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 4578899999999999999999996 99999999999999 99999999999999999998754
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=1.5e-20 Score=119.82 Aligned_cols=57 Identities=35% Similarity=0.481 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
++.|+.||.+|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 57899999999999999999997 99999999999999 99999999999999999987
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.82 E-value=1.6e-20 Score=127.68 Aligned_cols=66 Identities=30% Similarity=0.442 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
+..+..+|.|+.|+.+|+.+||..|..++ ||+..++++||..| ||++.+|++||||||+|+|+..+
T Consensus 15 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 15 GTNGLRRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ---------CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 44556788999999999999999999996 99999999999999 99999999999999999998643
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=1.8e-20 Score=120.38 Aligned_cols=58 Identities=31% Similarity=0.438 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
+|.|+.||.+|+.+||..|+.++ ||+..++.+||..| ||++.+|++||||||+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 57899999999999999999996 99999999999999 999999999999999999985
No 27
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=1.7e-20 Score=122.70 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
.+|.|+.||.+|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+++|+...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 578999999999999999999997 99999999999999 99999999999999999988653
No 28
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.4e-21 Score=125.33 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
....++.|+.||.+|+.+||.+|+.++ ||+..++++||..| ||++.+|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccC
Confidence 345688999999999999999999996 99999999999999 9999999999999999998854
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.81 E-value=1.1e-20 Score=124.35 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 19 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 19 ~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
+.++.|+.||..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+|+.....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 3678999999999999999999996 99999999999999 9999999999999999999977654
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=123.27 Aligned_cols=66 Identities=29% Similarity=0.424 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
.++.++.|+.|+..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+|+.....
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 445688899999999999999999996 99999999999999 9999999999999999999876543
No 31
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=121.52 Aligned_cols=62 Identities=32% Similarity=0.521 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
.+|.|+.||.+|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+++|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 368899999999999999999997 99999999999999 999999999999999999986654
No 32
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=2e-20 Score=127.12 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDE----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~----~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
.++.+|.||.||.+|+.+||.+|+. ++ ||+..++++||..| ||++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 86 99999999999999 99999999999999999875
No 33
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=8.8e-20 Score=121.25 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 21 ARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~-~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
.+.|+.|+.+|+.+||..|.. ++ ||+..++.+||..| ||++.+|++||||||+++|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467899999999999999996 86 99999999999999 9999999999999999999987543
No 34
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=6.5e-20 Score=128.14 Aligned_cols=66 Identities=26% Similarity=0.488 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC---------------CCccchhhhhhhhHHHHH
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------ISETNVYNWFQNRRARLK 81 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~---------------ls~~~V~iWFqNRR~k~k 81 (162)
..+.+|.|+.|+++|+.+||.+|+.++ ||+..++++||..| + |++.+|++||||||+++|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~k 78 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK 78 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999996 99999999999999 8 999999999999999999
Q ss_pred HhhcCC
Q 031304 82 RKQSGV 87 (162)
Q Consensus 82 r~~~~~ 87 (162)
++....
T Consensus 79 r~~~~~ 84 (95)
T 2cuf_A 79 RRANIA 84 (95)
T ss_dssp HHHHCC
T ss_pred HHhhcc
Confidence 988764
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=1.1e-19 Score=121.22 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 21 ARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~-~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
++.|+.||.+|+.+||..|+. ++ ||+..++.+||..| ||++.+|++||||||+++|+.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 578999999999999999995 86 99999999999999 9999999999999999999987543
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.80 E-value=3.2e-20 Score=127.96 Aligned_cols=64 Identities=27% Similarity=0.382 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
..+..+|.|+.|+..|+.+||..|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 3455788999999999999999999996 99999999999999 9999999999999999999864
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.80 E-value=4.8e-20 Score=118.38 Aligned_cols=57 Identities=26% Similarity=0.505 Sum_probs=50.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 23 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 23 ~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
.|+.||.+|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 589999999999999999996 99999999999999 9999999999999999999865
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.80 E-value=7.4e-20 Score=116.22 Aligned_cols=57 Identities=26% Similarity=0.381 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 20 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
.++.|+.|+..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999996 99999999999999 9999999999999999975
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.80 E-value=4.6e-20 Score=118.70 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
++.++.|+.|+.+|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 45678999999999999999999997 99999999999999 9999999999999999975
No 40
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.80 E-value=3.5e-20 Score=126.06 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDE-----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~-----~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
+...+.+|.||.||.+|+.+|| .|.. ++ ||+..++++||..| ||++.+|+|||||||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 3445678899999999999999 7999 96 99999999999999 99999999999999999875
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=9.2e-20 Score=127.82 Aligned_cols=65 Identities=29% Similarity=0.378 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
....++.||.||..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 455788999999999999999999996 99999999999999 999999999999999999997654
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.8e-20 Score=122.29 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
..+.+.|+.||.+|+.+||.+|..++ ||+..++++||..| ||++.+|++||||||+|+|+....
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 33456799999999999999999996 99999999999999 999999999999999999986554
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=115.16 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
|.||.+|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 6799999999999999996 99999999999999 999999999999999999985
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=120.09 Aligned_cols=62 Identities=18% Similarity=0.451 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
.++|+.||.+|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+++|++....
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 35667899999999999999996 99999999999999 9999999999999999999976554
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=119.43 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 19 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 19 ~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
..++.|+.||.+|+.+||..|..++ ||+..++++||..| ||++.+|++||||||+|+|+....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 3578899999999999999999996 99999999999999 999999999999999999986654
No 46
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=126.80 Aligned_cols=65 Identities=18% Similarity=0.385 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
++....+|.|+.|+.+|+.+||..|+.++ ||+..++++||..| ||++.+|++||||||+|+|+..
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 34455678999999999999999999996 99999999999999 9999999999999999999854
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=120.89 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 22 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 22 r~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
..|+.||.+|+.+||..|..++ ||+..++++||..+ ||++.+|++||||||+|+|+....-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 3567799999999999999996 99999999999999 9999999999999999999876553
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.78 E-value=3.8e-19 Score=118.38 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 20 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F---~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
++|.|+.|+..|+.+||.+| ..++ ||+..++.+||..+ ||++.+|++||||||+++|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 36889999999999999999 8887 99999999999999 9999999999999999999866543
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=5.8e-19 Score=117.50 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
++.++.|+.|+.+|+.+||.+|.. ++ ||+..++++||..+ ||++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHP-YPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhcccccc
Confidence 456788999999999999999987 86 99999999999999 99999999999999999998654
No 50
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.1e-19 Score=123.82 Aligned_cols=70 Identities=36% Similarity=0.582 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-------------hc----CCCccchhhhhhhhHHH
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAK-------------HG----QISETNVYNWFQNRRAR 79 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~-------------~~----~ls~~~V~iWFqNRR~k 79 (162)
.++.||.||.|++.|+.+||.+|+.++ ||+..+|++||..|+. || +|++.+|++||||||++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 455788999999999999999999997 9999999999999953 34 79999999999999999
Q ss_pred HHHhhcCC
Q 031304 80 LKRKQSGV 87 (162)
Q Consensus 80 ~kr~~~~~ 87 (162)
+|++....
T Consensus 82 ~kr~~~~~ 89 (102)
T 2da6_A 82 EAFRQKLA 89 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHhh
Confidence 99977653
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=117.68 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCCC
Q 031304 19 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 88 (162)
Q Consensus 19 ~~rr~Rt~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~~ 88 (162)
+.++.|+.|+.+|+.+||.+|.. ++ ||+..++++||..+ ||++.+|++||||+|+|+|+......
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~p-YPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKA-YPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 45788999999999999999988 46 99999999999999 99999999999999999998765543
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.3e-19 Score=115.76 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 20 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F---~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
+++.|+.|+.+|+.+||.+| ..++ ||+..++.+||..| ||++.+|++||||||+++|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999 8887 99999999999999 99999999999999999876
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.76 E-value=1.1e-18 Score=119.66 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 20 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F---~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
+||.|+.|+..|+.+||.+| ..++ ||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccc
Confidence 36889999999999999999 8887 99999999999999 999999999999999999986544
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.5e-18 Score=120.20 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
.||.+||.+||..|..++ ||+..++.+||..| ||++++|+|||||||+|++++....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSS-VLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 799999999999999996 99999999999999 9999999999999999998866544
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.75 E-value=1.4e-18 Score=111.34 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 23 QRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 23 ~Rt~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
+|+.|+.+|+.+||.+|.. ++ ||+..++.+||..+ ||++.+|++||||||+++|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 3689999999999999999 87 99999999999999 999999999999999999874
No 56
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.75 E-value=4.2e-19 Score=125.22 Aligned_cols=69 Identities=32% Similarity=0.488 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh--------------cC---CCccchhhhhhhhHHH
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKH--------------GQ---ISETNVYNWFQNRRAR 79 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~--------------~~---ls~~~V~iWFqNRR~k 79 (162)
.++.+|.||.|+..|+.+||..|+.++ ||+..+|++||..++.+ +| |++.+|++||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 456788999999999999999999996 99999999999994211 28 9999999999999999
Q ss_pred HHHhhcC
Q 031304 80 LKRKQSG 86 (162)
Q Consensus 80 ~kr~~~~ 86 (162)
+|++...
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 8776544
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=4.5e-19 Score=118.19 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=53.7
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 21 ARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F-~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
.+.|..++.+|+.+||..| ..++ ||+..++.+||..| ||++.+|++||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 4566678899999999999 8885 99999999999999 9999999999999999998753
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.75 E-value=1.1e-18 Score=130.91 Aligned_cols=64 Identities=34% Similarity=0.489 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
+..++.+|.||.|+..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+||+
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 34556788999999999999999999997 99999999999999 999999999999999999885
No 59
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.9e-18 Score=113.24 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~-~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+.+..+|.||.|+.+||.+|+.+|+. ++ ||+...|+.||.+| ||++++|++||||+|--.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 34567899999999999999999999 85 99999999999999 999999999999999653
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.4e-18 Score=116.25 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCCC
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 88 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~~ 88 (162)
..||.+||.+||..|..++ ||+..++++||..| ||++.+|++||||||+|+|+......
T Consensus 18 k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSS-FPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 3499999999999999996 99999999999999 99999999999999999988766543
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.73 E-value=1.9e-18 Score=131.21 Aligned_cols=62 Identities=23% Similarity=0.355 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
..+.||.||.|+..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 346788999999999999999999996 99999999999999 999999999999999999985
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.73 E-value=4.6e-18 Score=116.83 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 19 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 19 ~~rr~Rt~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
..++.|+.|+.+|+.+||.+|.. ++ ||+..++.+||..+ ||++.+|++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 35667999999999999999999 97 99999999999999 9999999999999999987
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.73 E-value=2.1e-18 Score=131.66 Aligned_cols=65 Identities=26% Similarity=0.406 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
.++.+|.||.|+..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+||....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 456788999999999999999999996 99999999999999 999999999999999999987643
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.73 E-value=4.9e-18 Score=127.77 Aligned_cols=62 Identities=29% Similarity=0.490 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
..++.+|.|+.|+..|+.+||.+|..++ ||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 3456788999999999999999999997 99999999999999 99999999999999999986
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=113.34 Aligned_cols=57 Identities=32% Similarity=0.408 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
..+|..|+..||..|..++ ||+..++.+||..| ||++++|++||||||+|+|+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQK-YLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 5789999999999999996 99999999999999 999999999999999999986644
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.72 E-value=6.9e-18 Score=115.11 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 21 ARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
++.|++|+.+|+.+||.+|.. ++ ||+..++.+||..+ ||++.+|++||||||+++|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccc
Confidence 345667999999999999999 97 99999999999999 999999999999999999885
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.71 E-value=8.8e-18 Score=109.80 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 28 TPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 28 t~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
+.+|+.+||..|..++ ||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 12 ~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQ-FPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGG-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhcc
Confidence 6899999999999997 99999999999999 999999999999999999974
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=108.49 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
+..++..|+.+||.+|..++ ||+..++.+||..| ||++++|++||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 34567999999999999996 99999999999999 99999999999999998765
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.69 E-value=1.2e-17 Score=126.20 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 18 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 18 ~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
++++|.|+.|+..|+.+||..|..++ ||+..++.+||..| ||++.+|++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 45778999999999999999999996 99999999999999 999999999999999999874
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1.1e-17 Score=108.99 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 29 PAQLQILEHVYD-ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 29 ~~ql~~Le~~F~-~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
+.|+.+||+.|. .+ +||+..+|.+||.+| ||+++||++||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 568999999995 56 599999999999999 999999999999999998863
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.68 E-value=2.3e-17 Score=125.49 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 17 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 17 ~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
..+.||.|+.|+.+|+.+||.+|+.++ ||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 345688999999999999999999996 99999999999999 99999999999999999887544
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.8e-16 Score=103.15 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcC
Q 031304 26 TPTPAQLQILEHVYD---ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~---~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~ 86 (162)
.|+.+|+.+|+.+|. .++ ||+..++.+||..+ ||++.+|++||||+|+|.|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 699999999999999 897 99999999999999 999999999999999999886543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=1.5e-16 Score=124.46 Aligned_cols=62 Identities=35% Similarity=0.571 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC---------------------CCccchhhhhh
Q 031304 16 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------------ISETNVYNWFQ 74 (162)
Q Consensus 16 ~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~---------------------ls~~~V~iWFq 74 (162)
..++.||.|+.|++.|+.+||+.|+.++ ||+..+|++||..| + |++.+|++|||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFq 185 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFA 185 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhch
Confidence 4466789999999999999999999996 99999999999999 7 99999999999
Q ss_pred hhHHHHHH
Q 031304 75 NRRARLKR 82 (162)
Q Consensus 75 NRR~k~kr 82 (162)
|||++.|.
T Consensus 186 NRR~~~k~ 193 (194)
T 1ic8_A 186 NRRKEEAF 193 (194)
T ss_dssp HHHHHCC-
T ss_pred hhhhhhhc
Confidence 99998764
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=117.70 Aligned_cols=65 Identities=35% Similarity=0.580 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh-----------------cCCCccchhhhhhhhH
Q 031304 15 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKH-----------------GQISETNVYNWFQNRR 77 (162)
Q Consensus 15 ~~~~~~rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~-----------------~~ls~~~V~iWFqNRR 77 (162)
+..++.||.|+.|++.|+.+||.+|+.++ ||+..+|++||..|+.. ..|++.+|++||+|||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 34567789999999999999999999996 99999999999999410 1289999999999999
Q ss_pred HHH
Q 031304 78 ARL 80 (162)
Q Consensus 78 ~k~ 80 (162)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 864
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.45 E-value=8.2e-14 Score=96.11 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhc
Q 031304 25 WTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 85 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~ 85 (162)
-.|+.+++.+|+.+|.. ++ ||+..++.+||..+ ||++.||++||+|+|.|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~np-YPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNA-YPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGG-SCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999987 77 99999999999999 99999999999999999987543
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.3e-14 Score=91.43 Aligned_cols=46 Identities=15% Similarity=0.442 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 29 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 29 ~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.+|+.+||.+|..|+ +|+..++..||..+ ||+.+.|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNM-EPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 578999999999997 79999999999999 99999999999999974
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.35 E-value=3e-13 Score=113.62 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
++.|+.|+..|+..||+.|+.++ ||+..+|++||.+| ||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 34578899999999999999996 99999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.67 E-value=2.6e-09 Score=61.86 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=17.9
Q ss_pred cchhhhhhhhHHHHHHhhcC
Q 031304 67 TNVYNWFQNRRARLKRKQSG 86 (162)
Q Consensus 67 ~~V~iWFqNRR~k~kr~~~~ 86 (162)
+||+|||||||+|+|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999997765
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.95 E-value=0.042 Score=35.61 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhh
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 75 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqN 75 (162)
...|+.+|.... .+.......|+.+. +|+..+|+-||-.
T Consensus 18 ~e~L~~Yy~~hk-~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQ-QLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTC-CCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred chHHHHHHHHhc-ccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 469999999984 79999999999999 9999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.21 E-value=1.4 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
|..|+++.......++... ........++|..+ ||+...|..|....
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~----gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY----NIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT----TSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH----CcCHHHHHHHHHHH
Confidence 4579998877775555543 23222366889999 99999999997643
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=84.06 E-value=2.1 Score=27.77 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhh
Q 031304 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 75 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqN 75 (162)
++.+..|+.++....-..+... . ...++|+.+ ||+...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g--~----s~~~iA~~~----gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG--E----SKASVARDI----GVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT--C----CHHHHHHHH----TCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--C----CHHHHHHHH----CcCHHHHHHHHHH
Confidence 4456789998865555566533 2 256789999 9999999999854
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.99 E-value=2.3 Score=29.21 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 23 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 23 ~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.|..||.++...+-..+..++ ... ..++|+.+ ||+...|..|..++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g-~~~---~~~~A~~~----gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENP-DLR---KGEIARRF----NIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCT-TSC---HHHHHHHH----TCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCC-CCc---HHHHHHHh----CCCHHHHHHHHhchhhhc
Confidence 577899999887777775554 343 33688899 999999999998876543
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.13 E-value=3 Score=22.84 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 75 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqN 75 (162)
.++.++...+...+... + ...+||..| |++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~----s~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V----SLHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C----CHHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHhh
Confidence 56777775555556443 2 256789999 9999999999854
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=80.00 E-value=2.9 Score=27.22 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
.+++.+..+|.-.|-..- .-.+||..| |+++..|+.+...=|.+.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~------s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW------STAQIATDL----GIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC------CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC------CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 366777778877665442 367789999 999999999998777766654
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=76.08 E-value=3.8 Score=24.66 Aligned_cols=47 Identities=15% Similarity=-0.054 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
.+++.+..+|...|-..- .-.++|..+ |++...|+.+...=+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~------s~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL------SYADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC------CHHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC------CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 477888899988765542 356789999 99999999988765555544
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.59 E-value=1.9 Score=24.16 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
.++.++...+...+... . ...+||..+ |++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-~-----s~~~ia~~l----gvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-H-----PRQQLAIIF----GIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-C-----CHHHHHHTT----SCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-C-----CHHHHHHHH----CCCHHHHHHHHHHc
Confidence 35566655555555543 1 356788888 99999999999653
No 87
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=69.37 E-value=7.5 Score=23.92 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 26 TPTPAQLQILEHVYD----ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~----~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
.+++.+..+|...|- .. ..-.++|..+ |++...|+.+...=+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~------~s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE------HTLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC------CCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 478899999998885 33 1356889999 9999999998876555554
No 88
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=68.66 E-value=7.5 Score=26.64 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
.+++.+..+|...|-..- .-.++|..+ |++...|+.|...-+.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~------s~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY------SLAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC------CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC------CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 477888888888766552 357789999 999999999998777666653
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=66.79 E-value=9.5 Score=24.95 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
.+++.+..+|.-+++.- .-.+||..| |+++..|+.+..+=+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~-------s~~eIA~~l----~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL-------TNKQIADRM----FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC-------CHHHHHHHH----TCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC-------CHHHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 58899999998864332 247889999 99999999988765555443
No 90
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=66.75 E-value=6.8 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHhcCCCccchhhhhh
Q 031304 24 RWTPTPAQLQILEHVYDEC-KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 74 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~-~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFq 74 (162)
|..|+.++....-..+... .. ...++|..+ ||+...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~-----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA-----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS-----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-----hHHHHHHHH----CcCHHHHHHHHH
Confidence 3568888776555555332 21 356789999 999999999985
No 91
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.08 E-value=6 Score=24.04 Aligned_cols=50 Identities=6% Similarity=0.140 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
.+++.+..+|...|-... -....-.++|..+ |++...|+.+...=+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~--~~g~s~~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDM--NTDYTLEEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTS--SSCCCHHHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCC--CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 478889999988883210 0112357789999 9999999998765444443
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=65.96 E-value=8.1 Score=26.64 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
.+++.+..+|. .|-.. ..-.+||..| |++...|+.+...=+.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g------~s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG------YSYREIATIL----SKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT------CCHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC------CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 35666667776 44333 1467789999 999999999998766666554
No 93
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=65.30 E-value=3.8 Score=29.75 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
+......|.... .......+||+.. |++...+...|.|+-.=..
T Consensus 34 l~aa~~lf~~~G--~~~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAREG--ARGLTFRAVDVEA----NVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHTC--TTTCCHHHHHHHS----SSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhC--hhhccHHHHHHHc----CCCcchHHHhCCCHHHHHH
Confidence 334445588874 4456677789899 9999999999999765443
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=62.86 E-value=13 Score=22.34 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-..+++.+..+|..++ .. + .-.++|..+ |++...|+.+..+=+.+
T Consensus 9 ~~~L~~~e~~il~~~~-~g--~----s~~eIA~~l----~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV-QD--K----TTKEIASEL----FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT-TT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 3568899999998853 22 2 356789999 99999999888754443
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=62.72 E-value=9.8 Score=24.15 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
..+++.+..+|.-++ .. + .-.+||..| |+++..|+.+..+=+.|.
T Consensus 20 ~~Lt~~e~~vl~l~~-~g--~----s~~eIA~~l----~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 20 NQLTPRERDILKLIA-QG--L----PNKMIARRL----DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGSCHHHHHHHHHHT-TT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 468899999998853 22 1 367889999 999999998876544443
No 96
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=62.04 E-value=15 Score=24.55 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
...+++.+..+|.-+++.- .-.+||..| |+++..|+.+..+=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~-------s~~EIA~~L----~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF-------LVTEIAKKL----NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC-------CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC-------CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 4579999999998865322 247899999 99999999988754433
No 97
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.27 E-value=9.5 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 26 TPTPAQLQILEHVYD----ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~----~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
.+++.+..+|...|- .. ..-.+||..+ |++...|+.+...=+.+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~------~s~~EIA~~l----gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP------KTLEEVGQYF----NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHH----TCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCC------CCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 467888899988875 32 2467789999 9999999998865444443
No 98
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=58.11 E-value=11 Score=25.63 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
.+++.+..+|.-.|-..- .-.++|..+ |+++..|+.+...-|.+.+..
T Consensus 25 ~L~~~~r~vl~l~~~~g~------s~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY------SLSEIADTF----NVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC------CHHHHHHHT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC------CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 367788888887765542 356788888 999999999998777766654
No 99
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=56.50 E-value=33 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhc--CCCccchhhhhhhh
Q 031304 21 ARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHG--QISETNVYNWFQNR 76 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F-~~~~~yp~~~~r~~LA~~l~~~~--~ls~~~V~iWFqNR 76 (162)
++.|.++|-+|...|-.++ +.++. .+..+ ||....+.. +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~-~~q~~---la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNR-SGQQD---LIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSC-CCHHH---HHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCC-CCHHH---HHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6788999999999999998 66653 44433 444222222 68888999999763
No 100
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=56.46 E-value=3.9 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 38 VYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 38 ~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+|.... .......+||+.. |++...+...|.|+-.
T Consensus 37 lf~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDG--SQRITTAKLAASV----GVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC--------CCHHHHHHHT----TSCHHHHHTTCSSHHH
T ss_pred HHhcCC--hhhcCHHHHHHHh----CCChhHHHHHCCCHHH
Confidence 556653 3455677889999 9999999999999765
No 101
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=53.26 E-value=16 Score=23.31 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHhcCCCccchhhhhh
Q 031304 25 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 74 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~----~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFq 74 (162)
|.++.++...+...|..- ..+.+..+...+...+ |++...+...|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 568899999999999652 1367778877777777 888877776664
No 102
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.00 E-value=18 Score=24.50 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
..++.++...+...+... . ...++|..| |++...|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~-----s~~~ia~~l----gis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V-----SLHEMSRKI----SRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-----CHHHHHHHH----TCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C-----CHHHHHHHH----CcCHHHHHHHHHcc
Confidence 467888887777777554 2 356789999 99999999999753
No 103
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=52.82 E-value=23 Score=24.50 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
..++.++....-..+... + ...++|..+ |++...|..|++.-
T Consensus 31 ~~~s~e~r~~iv~~~~~G--~----s~~~iA~~l----gis~~TV~rw~~~~ 72 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG--V----RPCDISRQL----RVSHGCVSKILGRY 72 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT--C----CHHHHHHHH----TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHH
Confidence 468888877776667543 2 256789999 99999999999643
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=52.63 E-value=18 Score=25.83 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhh
Q 031304 27 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 84 (162)
Q Consensus 27 ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~ 84 (162)
+++.+..+|.-.|-.. ..-.+||..| |+++..|+.+...=|.+.|+.-
T Consensus 141 L~~~~r~vl~l~~~~g------~s~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG------LSYEEIAAIM----DCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC------CCHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC------CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544333 1356778888 9999999999987777766543
No 105
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.53 E-value=11 Score=23.18 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 27 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 27 ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+++.+..+|.-++ .. + ...++|..+ |+++..|+.+..+=+.|.
T Consensus 17 L~~~e~~vl~l~~-~g--~----s~~eIA~~l----~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSAVV-AG--L----PNKSIAYDL----DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHHHT-TT--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHH-cC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 5778888887743 22 2 245789899 999999998876544443
No 106
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=52.12 E-value=11 Score=24.26 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
..+++.+..+|.-+++.- .-.+||..| |+++..|+.+..+=+.|.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~-------s~~eIA~~l----~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY-------SNQEIASAS----HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC-------CTTHHHHHH----TCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCC-------CHHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 357889999998854322 245789999 999999999887544443
No 107
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=52.00 E-value=16 Score=26.89 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
.+++.+..+|...|-..- ...+||..| |++...|+.+...=+.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g~------s~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL------PAKEVAKIL----ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC------CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC------CHHHHHHHh----CCCHHHHHHHHHHHHHHHHHH
Confidence 356667777776664441 356788888 999999999998777666654
No 108
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=51.27 E-value=14 Score=24.33 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHH-hhcCCCCC-HHHHHHHHHHHHHhcCCCccchhhhhh
Q 031304 24 RWTPTPAQLQILEHVY-DECKGTPR-KQKIQDMTAELAKHGQISETNVYNWFQ 74 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F-~~~~~yp~-~~~r~~LA~~l~~~~~ls~~~V~iWFq 74 (162)
+..|+.++....-..+ +....|++ .....++|..+ ||+...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHHH
Confidence 3468888876444444 33201222 24567889999 999999999975
No 109
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.44 E-value=30 Score=22.43 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhh
Q 031304 21 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 75 (162)
Q Consensus 21 rr~Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqN 75 (162)
...-..+|+.++.+|.-++ .. . ...+||..| |+++..|+....+
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~-~G-~-----s~~eIA~~L----~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE-KG-F-----TNQEIADAL----HLSKRSIEYSLTS 67 (90)
T ss_dssp -----CCCHHHHHHHHHHH-TT-C-----CHHHHHHHH----TCCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH-cC-C-----CHHHHHHHH----CcCHHHHHHHHHH
Confidence 3445689999999998877 33 2 367889999 9999999987654
No 110
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=50.36 E-value=6.5 Score=27.93 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-+..-...|.... | . ....+||+.. |++...|...|.||-.=
T Consensus 20 Il~aA~~lf~~~G-~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 20 ILAAAVRVFSEEG-L-D-AHLERIAREA----GVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHC-T-T-CCHHHHHHHT----TCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHhcC-c-C-CCHHHHHHHh----CCChHHHHHHcCCHHHH
Confidence 3445556688885 7 6 7889999999 99999999999997543
No 111
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=49.27 E-value=15 Score=20.92 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=27.5
Q ss_pred CCC--HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhh
Q 031304 26 TPT--PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 74 (162)
Q Consensus 26 ~ft--~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFq 74 (162)
.++ +++...+...+... + ...++|..| |++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g--~----s~~eIA~~l----gis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG--Y----TVQQIANAL----GVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT--C----CHHHHHHHH----TSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHH
Confidence 355 66666665555443 2 356789999 999999999874
No 112
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=47.54 E-value=7.4 Score=28.77 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-...|.... .......+||+.. |++...|...|.||-.=.
T Consensus 52 aA~~lf~e~G--~~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 52 TAENLLEDRP--LADISVDDLAKGA----GISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHSC--GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcC--cccCCHHHHHHHh----CCcHHHHHHHCCCHHHHH
Confidence 3344477774 4455677789999 999999999999976543
No 113
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=47.01 E-value=10 Score=27.97 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 20 TARQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 20 ~rr~Rt~ft~~q-l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
.++.|...+.++ +..-...|.... .......+||+.+ |++...|...|.||-.=..
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~G--~~~~s~~~IA~~a----Gvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEVG--LDGVSTRRLAKRL----GVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHHC--GGGCCHHHHHHHH----TSCTHHHHTTCSSHHHHHH
T ss_pred CcccccccCHHHHHHHHHHHHHhcC--cccCCHHHHHHHh----CCChhHHHHHcCCHHHHHH
Confidence 344455566654 344555677774 4455677889999 9999999999999765543
No 114
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.72 E-value=61 Score=22.57 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhh
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 75 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqN 75 (162)
..++.++...+...+... . ...++|..+ |++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~-----s~~~IA~~l----gis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V-----RPCDISRQL----RVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C-----CHHHHHHHH----TCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C-----CHHHHHHHH----CcCHHHHHHHHHH
Confidence 368888877776777544 2 355789999 9999999999964
No 115
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=45.34 E-value=10 Score=28.29 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...|...|.||-.=
T Consensus 49 l~AA~~lf~~~G--~~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 49 LATAENLLEDRP--LADISVDDLAKGA----GISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHHTTSC--GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcC--CccCcHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 334444577763 4455677789999 99999999999987654
No 116
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=41.57 E-value=10 Score=26.98 Aligned_cols=40 Identities=10% Similarity=0.397 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
......|.... .......+||+.. |++...+..+|.+|-.
T Consensus 38 ~aa~~l~~~~G--~~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 38 KVATELFREKG--YYATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHTC--TTTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHcC--cccCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 34455587774 3455677789999 9999999999999764
No 117
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=41.39 E-value=35 Score=22.28 Aligned_cols=41 Identities=7% Similarity=-0.003 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
.++.++...+...+... + ...++|..+ |++...|..|++.-
T Consensus 17 ~~s~~~r~~i~~~~~~g--~----s~~~ia~~l----gis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG--I----RPCVISRQL----RVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHTT--C----CHHHHHHHH----TCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHH
Confidence 57787777666667543 2 245689999 99999999999643
No 118
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=40.22 E-value=13 Score=26.25 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-...|.... | ......+||+.. |++...|..+|.|+-.=.
T Consensus 20 aA~~lf~e~G-~-~~~t~~~IA~~a----gvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 20 ASYELLLESG-F-KAVTVDKIAERA----KVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHC-T-TTCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcC-c-ccccHHHHHHHc----CCCHHHHHHHCCCHHHHH
Confidence 3344477774 4 455677889999 999999999999976554
No 119
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=39.95 E-value=15 Score=26.93 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
.....|.... .......+||+.. |++...|..+|.||-.
T Consensus 51 aA~~l~~~~G--~~~~tv~~IA~~A----Gvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 51 ACADLLDEVG--YDALSTRAVALRA----DVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHC--TTTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHhcC--hhhccHHHHHHHH----CCCchhHHHHcCCHHH
Confidence 3334477774 4455677789999 9999999999999754
No 120
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=39.85 E-value=17 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
.-...|.... .......+||+.. |++...|...|.|+-.
T Consensus 25 aa~~l~~~~G--~~~~s~~~Ia~~a----gvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 25 IALEVFARRG--IGRGGHADIAEIA----QVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHSC--CSSCCHHHHHHHH----TSCHHHHHHHCCSHHH
T ss_pred HHHHHHHhcC--cccccHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 3444588874 4455677789999 9999999999999754
No 121
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=39.34 E-value=42 Score=25.16 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
...+|+.++.+|.-.+ .. . .-.+||..| |+++..|+....+=+.|
T Consensus 173 ~~~Lt~~e~~vl~~~~-~g-~-----s~~eIa~~l----~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS-KG-K-----TASVTANLT----GINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHH-TT-C-----CHHHHHHHH----CCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC-C-----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 3468999999997754 32 2 357789999 99999999988765544
No 122
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.79 E-value=6.2 Score=28.46 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=8.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... .......+||+.. |++...|..+|.+|-.
T Consensus 36 l~aa~~l~~~~G--~~~~ti~~IA~~a----gvs~~t~Y~~F~sK~~ 76 (212)
T 2np3_A 36 LTAARVCFAERG--FDATSLRRIAETA----GVDQSLVHHFYGTKEN 76 (212)
T ss_dssp HHHHHHHC---------------------------------CCC-CH
T ss_pred HHHHHHHHHHcC--cccccHHHHHHHc----CCCHHHHHHHhCCHHH
Confidence 444555677763 5556677889999 9999999999988643
No 123
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.55 E-value=20 Score=25.66 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
-+..-...|.+.. | ......+||+.. |++...|...|.||-.=..
T Consensus 16 Il~aA~~lF~~~G-y-~~ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 16 ALQTAMELFWRQG-Y-EGTSITDLTKAL----GINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHT-T-TTCCHHHHHHHH----TCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhC-c-ccCCHHHHHHHh----CCChHHHHHHhCCHHHHHH
Confidence 3444455588874 4 445677889999 9999999999999766544
No 124
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=38.33 E-value=9.5 Score=28.38 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
..-...|.... | ......+||+.. |++...|...|.||-.=.
T Consensus 30 ~aA~~lf~~~G-~-~~~s~~~IA~~a----gvs~~tlY~~F~sKe~L~ 71 (231)
T 2zcx_A 30 DAARELGTERG-I-REITLTDIAATV----GMHKSALLRYFETREQIF 71 (231)
T ss_dssp HHHHHHHHHHC-S-TTCCHHHHHHHH----TSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHhCC-c-ccCCHHHHHHHh----CCCHHHHHHhCCCHHHHH
Confidence 34445588774 4 455677789999 999999999999975443
No 125
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=37.61 E-value=15 Score=26.91 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-+......|.... | ......+||+.. |++...|...|.+|-.=
T Consensus 35 Il~aA~~lf~~~G-~-~~~t~~~IA~~A----gvs~~t~Y~~F~sKe~L 77 (230)
T 2iai_A 35 LLSVAVQVFIERG-Y-DGTSMEHLSKAA----GISKSSIYHHVTGKEEL 77 (230)
T ss_dssp HHHHHHHHHHHHC-T-TTCCHHHHHHHH----TSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHHcC-c-cccCHHHHHHHH----CCChhHHHHhCCCHHHH
Confidence 3556666788874 4 445677789999 99999999999987543
No 126
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=37.27 E-value=31 Score=25.88 Aligned_cols=53 Identities=9% Similarity=0.147 Sum_probs=34.4
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 21 ARQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 21 rr~Rt~ft~~q-l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
++.+...+.++ +..-...|.... .......+||+.+ |++...+...|.||-.=
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G--~~~~s~~~IA~~a----Gvs~~tlY~hF~~K~~L 63 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVG--ERGLTFRALAERL----ATGPGAIYWHITGKAEL 63 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTT--TTTCCHHHHHHHH----TSCGGGGGGTCCCHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcC--cccCCHHHHHHHH----CCChHHHHHhcCCHHHH
Confidence 34444555554 334555677774 4555677889999 99999999999997644
No 127
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=36.38 E-value=72 Score=22.01 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHhcCCCcc
Q 031304 23 QRWTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISET 67 (162)
Q Consensus 23 ~Rt~ft~~ql~~Le~~F~~~----~~yp~~~~r~~LA~~l~~~~~ls~~ 67 (162)
+|..+|.+|+..|..+|..- ..+.+..+...+.+.| |....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l----g~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL----GRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT----TSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCcc
Confidence 45679999999999999641 2368888888777777 65444
No 128
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.68 E-value=24 Score=22.58 Aligned_cols=46 Identities=11% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHhcCCCccchhhhhh
Q 031304 25 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 74 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~----~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFq 74 (162)
|.++.++...|+..|..- ..+.+..+...+...+ |++...+..+|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 51 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIWS 51 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 457788999999998542 1367777777766666 888877777664
No 129
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=35.65 E-value=17 Score=25.81 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
..-...|.... | . ....+||+.. |++...|..+|.||-.=
T Consensus 20 ~aA~~lf~~~G-~-~-~t~~~IA~~a----gvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 20 EVAYDTFAAEG-L-G-VPMDEIARRA----GVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHHTC-T-T-SCHHHHHHHT----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhcC-C-C-CCHHHHHHHh----CCCHHHHHHHCCCHHHH
Confidence 33445588885 7 5 6888899999 99999999999997543
No 130
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=35.15 E-value=15 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 14 q~~lA~~l----gvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASL----GVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHH----TCCHHHHHHHHHHTC
T ss_pred HHHHHHHH----CCCHHHHHHHHHCCC
Confidence 56789999 999999999997654
No 131
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=34.80 E-value=14 Score=21.30 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
..+||..+ |++...|..|..++
T Consensus 17 ~~~lA~~~----gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALL----EVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTS
T ss_pred HHHHHHHH----CcCHHHHHHHHcCC
Confidence 46789999 99999999999764
No 132
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=34.52 E-value=59 Score=24.26 Aligned_cols=45 Identities=9% Similarity=0.038 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
...+|+.++.+|.-.+ .. . .-.+||..| |+++..|+...+|=+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~-~g-~-----s~~eIa~~l----~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA-VG-K-----TMEEIADVE----GVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHT-TT-C-----CHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC-C-----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 4569999999997754 33 2 357789999 99999999988765444
No 133
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=34.08 E-value=6.8 Score=27.96 Aligned_cols=40 Identities=8% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.....|.... .......+||+.. |++...|...|.||-.=
T Consensus 34 aA~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 73 (217)
T 3mvp_A 34 VAKDLFSDKT--YFNVTTNEIAKKA----DVSVGTLYAYFASKEDI 73 (217)
T ss_dssp HHHHHHHHHC--GGGCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHcC--ccccCHHHHHHHh----CCChhHHHHHcCCHHHH
Confidence 4444577774 4455677789899 99999999999997543
No 134
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=34.07 E-value=20 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... | ......+||+.. |++...+...|.||-.
T Consensus 20 l~aA~~lf~~~G-~-~~~s~~~Ia~~a----gvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQG-Y-SETSIGDIARAC----ECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHTC-T-TTSCHHHHHHHT----TCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHcC-c-ccCCHHHHHHHh----CCCcCeeeeeeCCHHH
Confidence 444555688874 4 455677789899 9999999999998754
No 135
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=33.76 E-value=24 Score=24.86 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
-+......|.+.. .......+||+.. |++...+...|.++-.=.
T Consensus 18 Il~aa~~lf~~~G--~~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 61 (195)
T 2iu5_A 18 IAKAFKDLMQSNA--YHQISVSDIMQTA----KIRRQTFYNYFQNQEELL 61 (195)
T ss_dssp HHHHHHHHHHHSC--GGGCCHHHHHHHH----TSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHHhCC--CCeeCHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 3445556688874 4445677889999 999999999999976543
No 136
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=33.72 E-value=16 Score=21.26 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 21 ~~~lA~~~----gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMV----GVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTSS
T ss_pred HHHHHHHH----CCCHHHHHHHHcCCC
Confidence 56789999 999999999997644
No 137
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=33.25 E-value=20 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+......|.... .......+||+.. |++...+...|.++-.=.
T Consensus 22 l~aa~~lf~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 64 (213)
T 2qtq_A 22 LQTASNIMREGD--VVDISLSELSLRS----GLNSALVKYYFGNKAGLL 64 (213)
T ss_dssp HHHHHHHHHHHT--SSCCCHHHHHHHH----CCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcC--cccccHHHHHHHh----CCChhhHhHhcCCHHHHH
Confidence 344555687774 4445577789999 999999999999975443
No 138
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.37 E-value=53 Score=25.05 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
..+++.+..+|.-.+ .. . .-.++|..| |+++..|+...++=|.|.+
T Consensus 196 ~~L~~~erevl~L~~-~G-~-----s~~EIA~~L----~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCIR-KG-L-----SSKEIAATL----YISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHHH-TT-C-----CHHHHHHHH----TCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHH-cC-C-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 468999999998875 32 1 367789999 9999999998775554443
No 139
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.19 E-value=31 Score=24.91 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 35 LEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 35 Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-...|.... .......+||+.. |++...|...|.||-.=
T Consensus 44 A~~lf~~~G--~~~~t~~~IA~~A----Gvs~~tlY~~F~sKe~L 82 (221)
T 3g7r_A 44 ATRIFYAEG--IHSVGIDRITAEA----QVTRATLYRHFSGKDDL 82 (221)
T ss_dssp HHHHHHHHC--STTSCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhC--cccCCHHHHHHHh----CCCHHHHHHHCCCHHHH
Confidence 334477774 4455677789999 99999999999997543
No 140
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.12 E-value=59 Score=21.53 Aligned_cols=51 Identities=6% Similarity=0.141 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
.+++.+..++.-.|-.+. -....-.++|..+ |++...|+.....=..+.|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~--~e~~s~~EIA~~l----giS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDM--NTDYTLEEVGKQF----DVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCC--CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 467778888887774320 1123567889999 99999999987665555544
No 141
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.43 E-value=22 Score=20.56 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 30 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 30 ~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.+..+|.-++ .. +. -.++|..| |+++..|+.+..+=+.|.
T Consensus 2 re~~vl~l~~-~g--~s----~~eIA~~l----~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 2 RERQVLKLID-EG--YT----NHGISEKL----HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHHHH-TS--CC----SHHHHHHT----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cC--CC----HHHHHHHh----CCCHHHHHHHHHHHHHHH
Confidence 3556666633 33 22 35789999 999999999887554443
No 142
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=31.40 E-value=23 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.484 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
..+||+.| |++...|.-|..++..-
T Consensus 13 ~~~lA~~l----GVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 13 VEKAAVGV----GVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp HHHHHHHH----TSCHHHHHHHHHHTSCC
T ss_pred HHHHHHHH----CCCHHHHHHHHhCCCCC
Confidence 56788899 99999999998654333
No 143
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.32 E-value=17 Score=21.32 Aligned_cols=23 Identities=0% Similarity=0.007 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 19 q~~lA~~~----gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKA----GVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTCC
T ss_pred HHHHHHHh----CCCHHHHHHHHcCCC
Confidence 56789999 999999999997643
No 144
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.29 E-value=28 Score=24.41 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHh
Q 031304 26 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 83 (162)
Q Consensus 26 ~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~ 83 (162)
.+++.+..+|.-.|-.. ..-.+||..| |+++..|+.....=|.+.|+.
T Consensus 93 ~Lp~~~r~vl~L~~~~g------~s~~EIA~~l----gis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG------FSPEDAAYLI----EVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TSCTTHHHHHTTTSSSC------CCHHHHHHTT----TSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHcC------CCHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 46677777776544333 3467889999 999999999997666665543
No 145
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=31.06 E-value=33 Score=24.51 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 36 EHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 36 e~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
...|.+.. | ......+||+.. |++...|...|.||-.=.
T Consensus 21 ~~lf~~~G-~-~~~s~~~IA~~a----GvskgtlY~~F~sKe~L~ 59 (210)
T 2wui_A 21 ERVFLEKG-V-GTTAMADLADAA----GVSRGAVYGHYKNKIEVC 59 (210)
T ss_dssp HHHHHHSC-T-TTCCHHHHHHHH----TSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHcC-c-cccCHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 44488874 4 455677789999 999999999999976543
No 146
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=30.82 E-value=20 Score=25.07 Aligned_cols=40 Identities=10% Similarity=0.260 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 35 LEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 35 Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
-...|.... .......+||+.. |++...+...|.+|-.=.
T Consensus 26 a~~lf~~~G--~~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 65 (208)
T 3cwr_A 26 AQRLLSSGG--AAAMTMEGVASEA----GIAKKTLYRFASGRADLI 65 (208)
T ss_dssp HHHHHHHHC--GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHcC--HHhccHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 334477763 4445677789999 999999999999975543
No 147
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=30.54 E-value=17 Score=25.34 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+..-...|.... .......+||+.. |++...|...|.||-.=.
T Consensus 18 l~aA~~lf~~~G--~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L~ 60 (199)
T 3on2_A 18 LARAESTLEKDG--VDGLSLRQLAREA----GVSHAAPSKHFRDRQALL 60 (199)
T ss_dssp HHHHHHHHHHHC--GGGCCHHHHHHHT----C-----CCCSSSSHHHHH
T ss_pred HHHHHHHHHhcC--hhhhhHHHHHHHh----CCChHHHHHHhCCHHHHH
Confidence 344455577774 4445677789899 999999999999976543
No 148
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=30.49 E-value=17 Score=25.73 Aligned_cols=41 Identities=5% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... | . ....+||+.. |++...+...|.||-.=
T Consensus 22 l~aA~~lf~~~G-~-~-~s~~~Ia~~a----gvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 22 IEAAAAEVARHG-A-D-ASLEEIARRA----GVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHHG-G-G-CCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcC-C-C-CCHHHHHHHh----CCchHHHHHHCCCHHHH
Confidence 334445588875 8 5 6889999999 99999999999997543
No 149
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=30.38 E-value=27 Score=24.37 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHHhhcCC
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 87 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr~~~~~ 87 (162)
++.-+|+.|| ||... |-. +- =.|||.+|+..+.+.
T Consensus 17 iIkiLyQSNP-yP~pe-------------GTR--qa---RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 17 LIKFLYQSNP-PPNPE-------------GTR--QA---RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHSSC-CCCCC-------------CCT--TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHccCC-CCCCC-------------Cch--hh---hHhHHHHHHHHHHHH
Confidence 4555699998 89764 211 11 148999998877765
No 150
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=30.29 E-value=9.9 Score=27.03 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=16.6
Q ss_pred cCCCccchhhhhhhhHHHHHH
Q 031304 62 GQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 62 ~~ls~~~V~iWFqNRR~k~kr 82 (162)
.|+++..|+.+...-|.+.|+
T Consensus 161 lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 161 TGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHH
Confidence 499999999998876666654
No 151
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.08 E-value=19 Score=21.49 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 26 ~~~lA~~~----gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQM----GKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHH----TCCHHHHHHHHTTSS
T ss_pred HHHHHHHH----CcCHHHHHHHHcCCC
Confidence 56789999 999999999987643
No 152
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.74 E-value=26 Score=26.52 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=36.7
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 22 RQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 22 r~Rt~ft~~q-l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
..|...+.++ +..-...|.... .......+||+.+ |++...+...|.||-.=..
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G--~~~~S~~~IA~~a----Gvs~~tlY~hF~sK~~Ll~ 68 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEG--LEKVTMRRLAQEL----DTGPASLYVYVANTAELHA 68 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHC--SSSCCHHHHHHHT----TSCHHHHTTTCCSHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHhcC--chhcCHHHHHHHH----CCChhHHHHHcCCHHHHHH
Confidence 3445556654 334455577774 4455677789999 9999999999999765443
No 153
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=29.61 E-value=22 Score=24.71 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... .......+||+.. |++...|...|.||-.=
T Consensus 13 l~aa~~l~~~~G--~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L 54 (199)
T 3qbm_A 13 VAQAAALFNVSG--YAGTAISDIMAAT----GLEKGGIYRHFESKEQL 54 (199)
T ss_dssp HHHHHHHHHHHC--STTCCHHHHHHHH----TCCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHhC--cCcCCHHHHHHHh----CCCccHHHHhCCCHHHH
Confidence 344455577774 4455677789999 99999999999987544
No 154
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.53 E-value=27 Score=24.10 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-+......|.... .......+||+.. |++...+...|.|+-.=
T Consensus 14 Il~aa~~l~~~~G--~~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~L 56 (195)
T 3ppb_A 14 ILETALQLFVSQG--FHGTSTATIAREA----GVATGTLFHHFPSKEQL 56 (195)
T ss_dssp HHHHHHHHHHHTC--STTSCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhcC--cccCCHHHHHHHh----CCChhHHHHHcCCHHHH
Confidence 3445556688874 4555677889999 99999999999997653
No 155
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=29.41 E-value=33 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 47 RKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 47 ~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
......+||+.. |++...|...|.||-.=
T Consensus 31 ~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 59 (190)
T 2v57_A 31 PTAALGDIAAAA----GVGRSTVHRYYPERTDL 59 (190)
T ss_dssp TTCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred CCCCHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 556677888899 99999999999997543
No 156
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.27 E-value=32 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhh-hHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN-RRA 78 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqN-RR~ 78 (162)
-+......|.... .......+||+.. |++...+...|.| +-.
T Consensus 11 Il~aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 11 ILHTASRLSQLQG--YHATGLNQIVKES----GAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHHC--TTTCCHHHHHHHH----CCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHHcC--ccccCHHHHHHHH----CCCchhHHHHccccHHH
Confidence 3445556677774 4455677789999 9999999999998 643
No 157
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.00 E-value=21 Score=21.26 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 21 ~~~lA~~~----gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMV----GVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTSS
T ss_pred HHHHHHHH----CcCHHHHHHHHcCCC
Confidence 56789999 999999999987643
No 158
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=28.63 E-value=20 Score=24.94 Aligned_cols=42 Identities=7% Similarity=0.137 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... .......+||+.. |++...+..+|.||-.=
T Consensus 14 l~aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 55 (206)
T 3dew_A 14 MEVATELFAQKG--FYGVSIRELAQAA----GASISMISYHFGGKEGL 55 (206)
T ss_dssp HHHHHHHHHHHC--GGGCCHHHHHHHH----TCCHHHHHHHSCHHHHH
T ss_pred HHHHHHHHhcCC--cccCcHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 444555577774 4556677889999 99999999999997543
No 159
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=27.98 E-value=19 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
..-...|.... | ......+||... |++...|..+|.+|-.
T Consensus 21 ~AA~~lf~~~G-~-~~~s~~~IA~~A----Gvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 21 EAAERVIARQG-L-GGLSHRRVAAEA----NVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHC-T-TCCCHHHHHHHH----TSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhC-c-ccCCHHHHHHHh----CCCchhHHHHcCCHHH
Confidence 33444587774 4 445567789999 9999999999998754
No 160
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=27.94 E-value=1.4e+02 Score=22.94 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
...+|+.++.+|.-..+ . . .-.+||..| |++++.|+....|=+.|
T Consensus 195 ~~~Lt~re~~vl~~~~~-G-~-----s~~eIA~~l----~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR-G-K-----TNWEIATIL----NISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCCHHHHHHHHHHHT-T-C-----CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-C-C-----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 35799999999988753 2 2 367889999 99999999988765444
No 161
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=27.51 E-value=32 Score=24.36 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.-...|.... | ......+||+.. |++...|...|.||-.=
T Consensus 25 aA~~l~~~~G-~-~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 25 AARNLFIERP-Y-AQVSIREIASLA----GTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHHTSC-C-SCCCHHHHHHHH----TSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHHCC-C-CcCCHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 3344577774 4 445677789999 99999999999997544
No 162
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.49 E-value=23 Score=20.64 Aligned_cols=23 Identities=0% Similarity=0.138 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 17 q~~lA~~~----gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKV----GTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTSC
T ss_pred HHHHHHHH----CcCHHHHHHHHcCCC
Confidence 56789999 999999999987643
No 163
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=27.46 E-value=24 Score=24.87 Aligned_cols=40 Identities=8% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
+......|.... | ......+||+.. |++...+...|.||-
T Consensus 23 l~aa~~l~~~~G-~-~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQG-F-DATSVDEVAEAS----GIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHC-T-TTSCHHHHHHHT----TSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcC-c-ccCCHHHHHHHh----CCCcchHhhhCCCHH
Confidence 344455587774 4 455667789899 999999999998854
No 164
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=27.33 E-value=23 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 26 q~~lA~~~----gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLA----GLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHH----TCCHHHHHHHHTTCS
T ss_pred HHHHHHHH----CCCHHHHHHHHCCCC
Confidence 56789999 999999999997643
No 165
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.26 E-value=31 Score=23.68 Aligned_cols=42 Identities=10% Similarity=0.276 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... .......+||+.. |++...+...|.|+-.=
T Consensus 14 l~aa~~l~~~~G--~~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~L 55 (188)
T 3qkx_A 14 FSATDRLMAREG--LNQLSMLKLAKEA----NVAAGTIYLYFKNKDEL 55 (188)
T ss_dssp HHHHHHHHHHSC--STTCCHHHHHHHH----TCCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHhcC--cccCCHHHHHHHh----CCCcchHHHHcCCHHHH
Confidence 344455588874 4556677899999 99999999999997543
No 166
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=27.25 E-value=22 Score=25.02 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 30 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 30 ~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-+......|.... | ......+||+.. |++...|...|.|+-.=.
T Consensus 13 ~Il~aa~~l~~~~G-~-~~~ti~~IA~~a----gvs~~t~Y~~F~sK~~L~ 57 (193)
T 2dg8_A 13 RILAATLDLIAEEG-I-ARVSHRRIAQRA----GVPLGSMTYHFTGIEQLL 57 (193)
T ss_dssp HHHHHHHHHHHHHC-G-GGCCHHHHHHHH----TSCTHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHhC-h-hhccHHHHHHHh----CCCchhhheeCCCHHHHH
Confidence 33445555677774 3 455677889999 999999999999976543
No 167
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=27.22 E-value=27 Score=25.14 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.4
Q ss_pred HHHHHHH---HhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHV---YDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~---F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-.+|+.. |.... | ......+||+.. |++...|...|.||-.=
T Consensus 27 ~~Il~aA~~lf~e~G-~-~~~s~~~IA~~a----GvskgtlY~yF~sKe~L 71 (214)
T 2oer_A 27 ASILEAAVQVLASEG-A-QRFTTARVAERA----GVSIGSLYQYFPNKAAI 71 (214)
T ss_dssp HHHHHHHHHC--------CCCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHhhC-c-ccccHHHHHHHh----CCCCchHHHhCCCHHHH
Confidence 4455555 76663 3 445577789999 99999999999997543
No 168
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=27.13 E-value=33 Score=24.38 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.-...|.... | ......+||+.. |++...|..+|.||-.=
T Consensus 19 aA~~lf~~~G-~-~~~s~~~IA~~a----GvskgtlY~~F~sKe~L 58 (210)
T 2xdn_A 19 AAERAFYKRG-V-ARTTLADIAELA----GVTRGAIYWHFNNKAEL 58 (210)
T ss_dssp HHHHHHHHHC-S-TTCCHHHHHHHH----TCCTTHHHHHCSSHHHH
T ss_pred HHHHHHHHcC-c-ccCcHHHHHHHH----CCChHHHHHHhCCHHHH
Confidence 3345588774 4 445677789999 99999999999997544
No 169
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=27.12 E-value=28 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
......|.... .......+||+.. |++...+...|.|+-.
T Consensus 19 ~aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~ 58 (202)
T 3lwj_A 19 TCSLDLFIEKG--YYNTSIRDIIALS----EVGTGTFYNYFVDKED 58 (202)
T ss_dssp HHHHHHHHHHC--TTTCCHHHHHHHH----CSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHcC--cccCCHHHHHHHh----CCCchhHHHHcCCHHH
Confidence 34445587774 4556677889999 9999999999998754
No 170
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=27.07 E-value=36 Score=24.01 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...|...|.|+-.=
T Consensus 19 l~aA~~lf~~~G--~~~~t~~~IA~~a----gvs~~tlY~~F~sK~~L 60 (217)
T 3nrg_A 19 IDVLLDEFAQND--YDSVSINRITERA----GIAKGSFYQYFADKKDC 60 (217)
T ss_dssp HHHHHHHHHHSC--GGGCCHHHHHHHH----TCCTTGGGGTCSSHHHH
T ss_pred HHHHHHHHHhcC--cccCCHHHHHHHh----CCcHHHHHHHcCCHHHH
Confidence 334445577774 4455677889999 99999999999997543
No 171
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=26.96 E-value=27 Score=24.57 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... .......+||+.. |++...|...|.||-.
T Consensus 20 l~aa~~l~~~~G--~~~~ti~~IA~~a----gvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 20 LDSGFHLVLRKG--FVGVGLQEILKTS----GVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHHHC--STTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcC--CccCCHHHHHHHh----CCChHHHHHHCCCHHH
Confidence 344455587774 4556677889999 9999999999999765
No 172
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=26.94 E-value=32 Score=23.89 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 30 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 30 ~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-+..-...|.... |- ....+||+.. |++...|...|.||-.=.
T Consensus 13 ~Il~aA~~lf~~~G-~~--~t~~~IA~~a----Gvs~~tly~~F~sK~~L~ 56 (190)
T 3jsj_A 13 RLLEAAAALTYRDG-VG--IGVEALCKAA----GVSKRSMYQLFESKDELL 56 (190)
T ss_dssp HHHHHHHHHHHHHC-TT--CCHHHHHHHH----TCCHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHHhC-cc--ccHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 34445556688884 55 7788899999 999999999999976543
No 173
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=26.83 E-value=27 Score=24.39 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... | ......+||+.. |++...+...|.||-.=
T Consensus 22 l~aa~~l~~~~G-~-~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 63 (211)
T 3him_A 22 RAAAIEVFAAKG-Y-GATTTREIAASL----DMSPGAVYPHYKTKESL 63 (211)
T ss_dssp HHHHHHHHHHHC-S-TTCCHHHHHHHT----TCCTTSSTTTCSSHHHH
T ss_pred HHHHHHHHHHcC-C-CcCCHHHHHHHh----CCCcChhhhcCCCHHHH
Confidence 444455588874 4 455677789899 99999999999987643
No 174
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=26.78 E-value=30 Score=24.14 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+..-...|.... | ......+||+.. |++...+..+|.+|-.=.
T Consensus 9 l~aA~~lf~~~G-~-~~~s~~~IA~~a----gvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKG-Y-EATSVQDLAQAL----GLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHC-S-TTCCHHHHHHHH----TCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhC-c-ccCCHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 344455677774 4 344577789999 999999999999987654
No 175
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.66 E-value=31 Score=24.50 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+..-...|.... .......+||+.. |++...+...|.|+-.
T Consensus 36 l~aA~~l~~~~G--~~~~t~~~IA~~a----Gvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKG--YSSVGVDEILKAA----RVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSC--TTTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcC--CCcCcHHHHHHHh----CCCcchhhhhCCCHHH
Confidence 334445587774 4455677889999 9999999999999765
No 176
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=26.61 E-value=29 Score=25.29 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=24.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 35 LEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 35 Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-...|.... | ......+||+.. |++...|...|.||-.=
T Consensus 44 A~~lf~~~G-~-~~~s~~~IA~~A----Gvs~~tlY~~F~sKe~L 82 (237)
T 3kkd_A 44 AMRLIVRDG-V-RAVRHRAVAAEA----QVPLSATTYYFKDIDDL 82 (237)
T ss_dssp HHHHHHHHC-G-GGCCHHHHHHHH----TSCTTTC-----CHHHH
T ss_pred HHHHHHhcC-h-hhcCHHHHHHHh----CCChhHHHHHcCCHHHH
Confidence 344577774 4 455677789899 99999999999997554
No 177
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.55 E-value=29 Score=24.74 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-...|... . ......+||+.. |++...|..+|.||-.=.
T Consensus 28 aA~~lf~~~-G--~~~s~~~IA~~a----Gvs~~tlY~~F~sK~~L~ 67 (215)
T 2hku_A 28 AATELFLEH-G--EGVPITQICAAA----GAHPNQVTYYYGSKERLF 67 (215)
T ss_dssp HHHHHHHHH-C--TTSCHHHHHHHH----TCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHh-C--CCcCHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 334446665 2 456677889899 999999999999976543
No 178
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=26.45 E-value=34 Score=24.10 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... .......+||+.. |++...|...|.+|-.
T Consensus 25 l~aA~~lf~~~G--~~~~t~~~IA~~a----gvs~~tlY~~F~sK~~ 65 (216)
T 3qqa_A 25 KAVALELFLTKG--YQETSLSDIIKLS----GGSYSNIYDGFKSKEG 65 (216)
T ss_dssp HHHHHHHHHHTC--TTTCCHHHHHHHH----TTSCCSSSCSCCSHHH
T ss_pred HHHHHHHHHHcC--hhhCCHHHHHHHh----CCCHHHHHHhcCCHHH
Confidence 334455587774 4555677789999 9999999999998753
No 179
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.16 E-value=27 Score=24.15 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... .......+||+.. |++...+...|.||-.
T Consensus 16 l~aa~~lf~~~G--~~~~t~~~IA~~a----gvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKG--FSGVGLNEILQSA----GVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHC--STTCCHHHHHHHH----TCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCC--cccCCHHHHHHHh----CCChhhHHHHcCCHHH
Confidence 445555688874 4455677789999 9999999999999765
No 180
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.77 E-value=19 Score=25.69 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...|...|.||-.=
T Consensus 15 l~AA~~lf~~~G--~~~~s~~~IA~~A----Gvs~gtlY~~F~sKe~L 56 (203)
T 2np5_A 15 AAALFDVAAESG--LEGASVREVAKRA----GVSIGAVQHHFSTKDEM 56 (203)
T ss_dssp HHHHHHHHHHHC--GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhC--hhhccHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 344445577774 3455677889999 99999999999997543
No 181
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=25.72 E-value=8.3 Score=27.36 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 37 HVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 37 ~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
..|.... .......+||+.. |++...|..+|.||-.
T Consensus 29 ~lf~~~G--~~~~s~~~IA~~a----Gvs~~tlY~~F~sKe~ 64 (212)
T 3loc_A 29 DTFSQFG--FHGTRLEQIAELA----GVSKTNLLYYFPSKEA 64 (212)
T ss_dssp HHHHHHH--HHHCCHHHHHHHH----TSCHHHHHHHSSSHHH
T ss_pred HHHHHhC--cccCCHHHHHHHH----CcCHHHHhhhCCCHHH
Confidence 3366653 3344577889999 9999999999999743
No 182
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.60 E-value=29 Score=24.24 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...+...|.||-.=
T Consensus 17 l~aA~~lf~~~G--~~~~s~~~Ia~~a----gvs~~t~Y~~F~sK~~L 58 (203)
T 3b81_A 17 ANKIWDIFIANG--YENTTLAFIINKL----GISKGALYHYFSSKEEC 58 (203)
T ss_dssp HHHHHHHHHHHC--STTCCHHHHHHHH----TCCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHcC--cccCcHHHHHHHh----CCCchhHHHHcCCHHHH
Confidence 334445577774 4455677789999 99999999999997543
No 183
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=25.46 E-value=41 Score=23.69 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... | ......+||+.. |++...+...|.||-.=
T Consensus 18 l~aA~~lf~~~G-~-~~~s~~~IA~~a----Gvs~~tlY~~F~sKe~L 59 (197)
T 2hyt_A 18 LATARKVFSERG-Y-ADTSMDDLTAQA----SLTRGALYHHFGDKKGL 59 (197)
T ss_dssp HHHHHHHHHHHC-T-TTCCHHHHHHHH----TCCTTHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhC-c-ccCCHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 334445588874 4 445577789999 99999999999997543
No 184
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.45 E-value=33 Score=23.78 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 29 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 29 ~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
..-+......|.... | ......+||+.. |++...+...|.|+-.=.
T Consensus 14 ~~il~aa~~lf~~~G-~-~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 59 (196)
T 3he0_A 14 DQILAAAEQLIAESG-F-QGLSMQKLANEA----GVAAGTIYRYFSDKEHLL 59 (196)
T ss_dssp HHHHHHHHHHHHHHC-T-TTCCHHHHHHHH----TSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhC-c-ccCCHHHHHHHh----CCCcchHHHhcCCHHHHH
Confidence 344555666688874 4 456677889999 999999999999976543
No 185
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=25.33 E-value=34 Score=23.94 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... .......+||+.. |++...|..+|.++-.=
T Consensus 10 l~aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 51 (185)
T 2yve_A 10 LRTAIDYIGEYS--LETLSYDSLAEAT----GLSKSGLIYHFPSRHAL 51 (185)
T ss_dssp HHHHHHHHHHSC--STTCCHHHHHHHH----CCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcC--hhhccHHHHHHHh----CCChHHHHHhCcCHHHH
Confidence 444455677774 4456677889999 99999999999986543
No 186
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=25.30 E-value=27 Score=24.98 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+..-...|.... |- ....+||+.. |++...|..+|.||-.=.
T Consensus 18 l~aA~~lf~~~G-~~--~s~~~IA~~a----gvs~~tiY~~F~sK~~L~ 59 (224)
T 1t33_A 18 IAAALAQFGEYG-LH--ATTRDIAALA----GQNIAAITYYFGSKEDLY 59 (224)
T ss_dssp HHHHHHHHHHHG-GG--SCHHHHHHHH----TSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhC-cc--ccHHHHHHHh----CCCHHHHHHhcCCHHHHH
Confidence 334445587774 55 7788899999 999999999999976543
No 187
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.22 E-value=1.4e+02 Score=19.16 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHhcC--CCccchhhhhh
Q 031304 22 RQRWTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQ--ISETNVYNWFQ 74 (162)
Q Consensus 22 r~Rt~ft~~ql~~Le~~F~~~----~~yp~~~~r~~LA~~l~~~~~--ls~~~V~iWFq 74 (162)
.....++.+++..|..+|..- ..+.+..+...+...+ | ++...|..+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l----g~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL----GYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH----TCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----CCCCCHHHHHHHHH
Confidence 345678999999999998543 2379998888888887 5 56777777774
No 188
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=25.01 E-value=27 Score=20.63 Aligned_cols=22 Identities=5% Similarity=-0.065 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
..+||..+ |++...|..|..++
T Consensus 29 ~~~lA~~~----gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLS----GLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHH----TCCHHHHHHHHTTC
T ss_pred HHHHHHHH----CcCHHHHHHHHCCC
Confidence 56789999 99999999998764
No 189
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.99 E-value=35 Score=20.98 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 28 q~~lA~~~----gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKI----GIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHH----TCCHHHHHHHHHCGG
T ss_pred HHHHHHHh----CCCHHHHHHHHcCCC
Confidence 56789999 999999999998744
No 190
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=24.92 E-value=27 Score=23.86 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+......|...+ .......+||+.. |++...+...|.|+-.=.
T Consensus 18 l~aa~~l~~~~G--~~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 60 (177)
T 3kkc_A 18 YNAFISLLQEND--YSKITVQDVIGLA----NVGRSTFYSHYESKEVLL 60 (177)
T ss_dssp HHHHHHHTTTSC--TTTCCHHHHHHHH----CCCHHHHTTTCSSTHHHH
T ss_pred HHHHHHHHHhCC--hhHhhHHHHHHHh----CCcHhhHHHHcCCHHHHH
Confidence 344555677764 4455677789999 999999999999876543
No 191
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.83 E-value=33 Score=21.38 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHhcCCCccchhhhhh
Q 031304 24 RWTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 74 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~----~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFq 74 (162)
-..++.+++..|..+|..- ..+.+..+...+...+ |++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~----g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL----RVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHT----TCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc----CcCHHHHHHHHH
Confidence 3467888999999998642 1367777777777777 888888877774
No 192
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=24.74 E-value=31 Score=24.18 Aligned_cols=42 Identities=10% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... .......+||+.. |++...+...|.++-.=
T Consensus 20 l~aa~~l~~~~G--~~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~L 61 (220)
T 3lhq_A 20 LDVALRLFSQQG--VSATSLAEIANAA----GVTRGAIYWHFKNKSDL 61 (220)
T ss_dssp HHHHHHHHHHHC--STTCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcC--cccCCHHHHHHHh----CCCceeehhhcCCHHHH
Confidence 344455577774 4455677789999 99999999999997543
No 193
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=24.70 E-value=25 Score=24.27 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-+......|.... .......+||+.. |++...|...|.|+-.=
T Consensus 15 Il~aa~~l~~~~G--~~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~L 57 (196)
T 3col_A 15 IQDAVAAIILAEG--PAGVSTTKVAKRV----GIAQSNVYLYFKNKQAL 57 (196)
T ss_dssp HHHHHHHHHHHHC--GGGCCHHHHHHHH----TSCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHhcC--cccCCHHHHHHHh----CCcHHHHHHHhCCHHHH
Confidence 3444555677774 4455677889999 99999999999997653
No 194
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=24.66 E-value=1.1e+02 Score=22.87 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+|+.++.+|.-.. .. . .-.+||..| |++++.|+.-..|=+
T Consensus 174 ~~Lt~re~~vl~~~~-~G-~-----s~~eIa~~l----~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 174 VRLTARETEMLKWTA-VG-K-----TYGEIGLIL----SIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCCHHHHHHHHHHH-TT-C-----CHHHHHHHH----TSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-cC-C-----CHHHHHHHH----CCCHHHHHHHHHHHH
Confidence 467788888876653 22 1 356788889 999999998766543
No 195
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=24.59 E-value=29 Score=24.43 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...+..+|.||-.=
T Consensus 14 l~aA~~lf~~~G--~~~~t~~~IA~~a----gvs~~tlY~~F~sK~~L 55 (199)
T 2o7t_A 14 ITTTCNLYRTHH--HDSLTMENIAEQA----GVGVATLYRNFPDRFTL 55 (199)
T ss_dssp HHHHHHHHHHSC--GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHCC--CccCCHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 334445577773 4455677889999 99999999999987543
No 196
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=24.55 E-value=92 Score=20.54 Aligned_cols=46 Identities=11% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHhcCCCccchhhhh
Q 031304 24 RWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWF 73 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~---~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWF 73 (162)
.+.++.++...+..+|.. ...+.+..+...+...+ |++...+...|
T Consensus 6 ~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~----gl~~~el~~i~ 54 (106)
T 1eh2_A 6 PWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNS----KLPVDILGRVW 54 (106)
T ss_dssp CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTT----TCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHc----CCCHHHHHHHH
Confidence 467889999999999865 22367777777766666 88877776655
No 197
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=24.50 E-value=22 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
..+||..+ |++...|..|..++
T Consensus 24 q~~lA~~~----gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETL----DKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHT----TCCHHHHHHHHTTS
T ss_pred HHHHHHHH----CcCHHHHHHHHcCC
Confidence 56788888 99999999999764
No 198
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=24.41 E-value=32 Score=21.34 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 34 q~elA~~~----gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELL----GVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTCG
T ss_pred HHHHHHHH----CcCHHHHHHHHcCCC
Confidence 56789999 999999999998765
No 199
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=24.25 E-value=31 Score=25.47 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
......|.... | ......+||+.. |++...|..+|.|+-.=.
T Consensus 53 ~aA~~lf~~~G-~-~~~t~~~IA~~a----Gvs~~t~Y~~F~sKe~Ll 94 (245)
T 3aqt_A 53 TSARTLMAERG-V-DNVGIAEITEGA----NIGTGTFYNYFPDREQLL 94 (245)
T ss_dssp HHHHHHHHHHC-G-GGCCHHHHHHHT----TSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHhcC-c-ccCcHHHHHHHh----CCChHHHHHHcCCHHHHH
Confidence 34445577764 3 345677788888 999999999999976543
No 200
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.99 E-value=26 Score=24.16 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-+......|.... .......+||+.. |++...+...|.|+-.=
T Consensus 13 Il~aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 55 (183)
T 1zk8_A 13 IVETAAEIADANG--VQEVTLASLAQTL----GVRSPSLYNHVKGLQDV 55 (183)
T ss_dssp HHHHHHHHHHHHC--GGGCCHHHHHHHH----TSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHhcC--ccccCHHHHHHHc----CCCchHHHHHcCCHHHH
Confidence 3445556677774 4455677789999 99999999999997543
No 201
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=23.92 E-value=16 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 27 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 27 ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
+++.+..+|.-.|- ....-.+||..| |++...|+.+...=+
T Consensus 199 L~~~~r~vl~l~~~------~g~s~~EIA~~l----gis~~tV~~~~~ra~ 239 (243)
T 1l0o_C 199 LDERERLIVYLRYY------KDQTQSEVASRL----GISQVQMSRLEKKIL 239 (243)
T ss_dssp ---------------------------------------------------
T ss_pred CCHHHHHHHHHHHh------cCCCHHHHHHHH----CcCHHHHHHHHHHHH
Confidence 45555555554333 334567889999 999999999876433
No 202
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.88 E-value=28 Score=20.85 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 23 q~~lA~~~----gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLA----GLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHH----TCCHHHHHHHHCTTC
T ss_pred HHHHHHHH----CcCHHHHHHHHcCCC
Confidence 56789999 999999999997654
No 203
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=23.82 E-value=29 Score=24.01 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
-+......|.... .......+||+.. |++...+...|.||-.
T Consensus 7 Il~aa~~l~~~~G--~~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~ 48 (194)
T 3bqz_B 7 ILGVAKELFIKNG--YNATTTGEIVKLS----ESSKGNLYYHFKTKEN 48 (194)
T ss_dssp HHHHHHHHHHHHT--TTTCCHHHHHHHT----TCCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHcC--CccCCHHHHHHHh----CCCchhHHHhCCCHHH
Confidence 3445556677774 3445677789899 9999999999999754
No 204
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=23.77 E-value=28 Score=22.11 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 50 KIQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 50 ~r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
...+||..+ |++...|..|..+++
T Consensus 24 sq~~lA~~~----gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 24 TQLEIAKSI----GVSPQTFNTWCKGIA 47 (94)
T ss_dssp CHHHHHHHH----TCCHHHHHHHHTTSC
T ss_pred CHHHHHHHH----CcCHHHHHHHHhCCC
Confidence 357789999 999999999997643
No 205
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.69 E-value=29 Score=23.63 Aligned_cols=41 Identities=15% Similarity=0.383 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
......|.... .......+||+.. |++...+...|.+|-.=
T Consensus 11 ~aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 51 (170)
T 3egq_A 11 EAALRLYMKKP--PHEVSIEEIAREA----KVSKSLIFYHFESKQKL 51 (170)
T ss_dssp HHHHHHHTTSC--GGGCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhcC--CccCcHHHHHHHh----CCCchhHHHHcCCHHHH
Confidence 34445577764 3455677889999 99999999999997643
No 206
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=23.61 E-value=29 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=34.0
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 22 RQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 22 r~Rt~ft~~q-l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+.|...+.++ +..-...|.... .......+||+.+ |++...|...|.||-.
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G--~~~~s~~~IA~~a----Gvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGD--AETFSVRKLAASL----GTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSS--CCCCCHHHHHHHT----TSCHHHHHHHTSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcC--cccCCHHHHHHHh----CcCHHHHHHHcCCHHH
Confidence 3445566654 334455577763 4455677789999 9999999999999754
No 207
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=23.38 E-value=26 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.340 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... .......+||+.. |++...|...|.++-.
T Consensus 13 l~aA~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEHG--YDNVTVTDIAERA----GLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHSC--GGGCCHHHHHHHT----TCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhcC--ccccCHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 444555687774 4445667788888 9999999999988544
No 208
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=23.15 E-value=34 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHHHHh-hcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 32 LQILEHVYD-ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 32 l~~Le~~F~-~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
+......|. ... .......+||... |++...+...|.||-.=.
T Consensus 17 l~aa~~l~~~~~G--~~~~ti~~Ia~~A----gvs~~t~Y~~F~sK~~Ll 60 (220)
T 3lsj_A 17 MSAARHLMESGRG--FGSLSLREVTRAA----GIVPAGFYRHFSDMDQLG 60 (220)
T ss_dssp HHHHHHHTTTSCC--GGGCCHHHHHHHH----TSCGGGGTTTCSSHHHHH
T ss_pred HHHHHHHHHhCCC--cccCCHHHHHHHh----CCChhHHHHHcCCHHHHH
Confidence 344445577 663 4556677889999 999999999999976543
No 209
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=23.12 E-value=29 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
......|.... .......+||+.. |++...|...|.||-.=
T Consensus 25 ~aa~~l~~~~G--~~~~s~~~Ia~~a----gvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 25 SAALDTFSQFG--FHGTRLEQIAELA----GVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHHC--TTTCCHHHHHHHT----TSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHcC--cchhhHHHHHHHH----CCChhHHHHhCCCHHHH
Confidence 34444577774 4555677889999 99999999999997543
No 210
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.08 E-value=36 Score=24.22 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...|..+|.||-.=
T Consensus 14 l~aA~~lf~~~G--~~~~s~~~IA~~a----Gvs~~tiY~~F~sKe~L 55 (202)
T 2d6y_A 14 FEAAVAEFARHG--IAGARIDRIAAEA----RANKQLIYAYYGNKGEL 55 (202)
T ss_dssp HHHHHHHHHHHT--TTSCCHHHHHHHH----TCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcC--cccCCHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 444455687774 3445677789999 99999999999987543
No 211
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=22.94 E-value=30 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 30 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 30 ~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-+..-...|.... | ......+||+.. |++...|..+|.||-.=.
T Consensus 11 ~Il~aA~~lf~~~G-~-~~~t~~~IA~~a----gvs~~tlY~~F~sK~~L~ 55 (192)
T 2zcm_A 11 KIIDNAITLFSEKG-Y-DGTTLDDISKSV----NIKKASLYYHYDNKEEIY 55 (192)
T ss_dssp HHHHHHHHHHHHHC-T-TTCCHHHHHHHT----TCCHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHcC-c-ccCCHHHHHHHh----CCChHHHHHHCCCHHHHH
Confidence 33445556688774 4 455677789899 999999999999975443
No 212
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=22.91 E-value=29 Score=23.84 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... .......+||+.. |++...+...|.||-.=
T Consensus 16 l~aa~~l~~~~G--~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L 57 (191)
T 3on4_A 16 LAVAEALIQKDG--YNAFSFKDIATAI----NIKTASIHYHFPSKEDL 57 (191)
T ss_dssp HHHHHHHHHHHC--GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhC--cccCCHHHHHHHh----CCCcchhhhcCCCHHHH
Confidence 444455577763 4555677889999 99999999999997643
No 213
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.74 E-value=25 Score=21.56 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 28 q~~lA~~~----gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKM----GMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHT----TSCHHHHHHHHTTSS
T ss_pred HHHHHHHh----CcCHHHHHHHHcCCC
Confidence 45688888 999999999997764
No 214
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=22.56 E-value=17 Score=26.49 Aligned_cols=42 Identities=12% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... .......+||+.. |++...|...|.||-.=
T Consensus 36 l~aA~~lf~~~G--~~~~s~~~IA~~a----Gvs~~tlY~~F~sK~~L 77 (226)
T 2pz9_A 36 VAAAKEEFARHG--IAGARVDRIAKQA----RTSKERVYAYFRSKEAL 77 (226)
T ss_dssp HHHHHHHHHHHH--HHHCCHHHHHHHT----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhC--cccCcHHHHHHHH----CCChHHHHHHcCCHHHH
Confidence 344445576663 3344567788888 99999999999987544
No 215
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.45 E-value=32 Score=20.44 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCCccchhhhh
Q 031304 51 IQDMTAELAKHGQISETNVYNWF 73 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWF 73 (162)
..+||..| |++...|..|.
T Consensus 13 q~~lA~~l----Gvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKAL----GISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHH----TCCHHHHHHCC
T ss_pred HHHHHHHh----CCCHHHHHHHH
Confidence 46789999 99999999998
No 216
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.44 E-value=1.7e+02 Score=20.16 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc------CCCccchhhhhhh
Q 031304 24 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHG------QISETNVYNWFQN 75 (162)
Q Consensus 24 Rt~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~------~ls~~~V~iWFqN 75 (162)
+..++.++...|..+...++. .+.. +|+..|...+ .++...|..|+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~-~s~~---~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPT-MFAW---EIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSS-SCHH---HHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCcc-chHH---HHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 346778788888888877653 5544 3444443222 4788888888853
No 217
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=22.41 E-value=19 Score=24.85 Aligned_cols=40 Identities=5% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.....|.... .......+||+.. |++...+..+|.||-.=
T Consensus 16 aa~~l~~~~G--~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L 55 (195)
T 3pas_A 16 ATVREVADHG--FSATSVGKIAKAA----GLSPATLYIYYEDKEQL 55 (195)
T ss_dssp HHHHHHHHHH--HHHCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHcC--hHhcCHHHHHHHh----CCCchHHHHHcCCHHHH
Confidence 3334466653 3344577889899 99999999999997543
No 218
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.22 E-value=31 Score=24.01 Aligned_cols=40 Identities=13% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.....|.... .......+||+.. |++...+...|.||-.=
T Consensus 22 aa~~l~~~~G--~~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 22 AAVDVFSDRG--FHETSMDAIAAKA----EISKPMLYLYYGSKDEL 61 (203)
T ss_dssp HHHHHHHHHC--TTTCCHHHHHHHT----TSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHcC--cccccHHHHHHHh----CCchHHHHHHhCCHHHH
Confidence 3444577774 4455677788888 99999999999997654
No 219
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.14 E-value=90 Score=20.96 Aligned_cols=23 Identities=0% Similarity=-0.057 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|-.+++
T Consensus 87 q~~la~~~----g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIF----GGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHH----CSCTTHHHHHHHTSS
T ss_pred HHHHHHHH----CCCHHHHHHHHCCCC
Confidence 34677777 999999999987754
No 220
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=22.13 E-value=34 Score=21.57 Aligned_cols=23 Identities=4% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 24 q~~lA~~~----gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAM----EIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHH----TCCHHHHHHHHHTSS
T ss_pred HHHHHHHh----CCCHHHHHHHHcCCC
Confidence 56789999 999999999998754
No 221
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.13 E-value=42 Score=23.04 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.... | ......+||+.. |++...|...|.||-.=
T Consensus 13 l~aA~~l~~~~G-~-~~~s~~~IA~~a----gvs~~tly~~F~sK~~L 54 (180)
T 2fd5_A 13 LGAATQALLERG-A-VEPSVGEVMGAA----GLTVGGFYAHFQSKDAL 54 (180)
T ss_dssp HHHHHHHHHHHT-T-TSCCHHHHHHHT----TCCGGGGGGTCSCHHHH
T ss_pred HHHHHHHHHHhC-c-ccCCHHHHHHHh----CCCccHHHHHCCCHHHH
Confidence 334445577774 4 345667788888 99999999999987543
No 222
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=22.00 E-value=1.5e+02 Score=18.32 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=36.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHHH
Q 031304 20 TARQRWTPTPAQLQILEHVYDECK-GTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 82 (162)
Q Consensus 20 ~rr~Rt~ft~~ql~~Le~~F~~~~-~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~kr 82 (162)
.++.|.++|++.-...-.+.+.-. .--.+..+.++-..- ||+..+|+.=.|..|...+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~----gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVD----KLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCT----TCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHc
Confidence 356788899876655544444432 112233444433323 78999999999988887765
No 223
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=21.97 E-value=35 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
......|.... | ......+||+.. |++...+...|.||-.=
T Consensus 20 ~AA~~l~~~~G-~-~~~tv~~IA~~a----gvs~~t~Y~~F~sK~~L 60 (231)
T 2qib_A 20 GVALDLFSRRS-P-DEVSIDEIASAA----GISRPLVYHYFPGKLSL 60 (231)
T ss_dssp HHHHHHHHHSC-G-GGCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcC-c-hhcCHHHHHHHh----CCCHHHHHHHCCCHHHH
Confidence 34445577774 3 555677889999 99999999999997543
No 224
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.80 E-value=32 Score=23.62 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
+......|.... | ......+||+.. |++...+...|.++-.
T Consensus 14 l~aa~~l~~~~G-~-~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~ 54 (194)
T 2g7s_A 14 LQCARTLIIRGG-Y-NSFSYADISQVV----GIRNASIHHHFPSKSD 54 (194)
T ss_dssp HHHHHHHHHHHC-G-GGCCHHHHHHHH----CCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcC-c-ccCCHHHHHHHh----CCCchHHHHHcCCHHH
Confidence 334445577764 3 445677889999 9999999999999754
No 225
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=21.71 E-value=45 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|...+ | ......+||+.. |++...+...|.++-.=
T Consensus 18 l~aa~~l~~~~G-~-~~~ti~~Ia~~a----gvs~~t~Y~~F~~K~~L 59 (189)
T 3vp5_A 18 YDACLNEFQTHS-F-HEAKIMHIVKAL----DIPRGSFYQYFEDLKDA 59 (189)
T ss_dssp HHHHHHHHHHSC-T-TTCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHCC-c-ccccHHHHHHHh----CCChHHHHHHCCCHHHH
Confidence 344555577774 4 445677889999 99999999999987543
No 226
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=21.69 E-value=40 Score=23.37 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
..-...|.... .......+||+.. |++...|...|.||..=.
T Consensus 15 ~aA~~l~~~~G--~~~~t~~~IA~~A----gvs~~tly~~F~sK~~L~ 56 (194)
T 3dpj_A 15 AAADELFYRQG--FAQTSFVDISAAV----GISRGNFYYHFKTKDEIL 56 (194)
T ss_dssp HHHHHHHHHHC--TTTCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHcC--cccCCHHHHHHHH----CCChHHHHHHcCCHHHHH
Confidence 34445577774 4455677789999 999999999999976543
No 227
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=21.63 E-value=39 Score=25.24 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
.....+|.... .......+||+.. |++...|...|.|+-.=
T Consensus 55 ~AA~~lf~e~G--~~~~Ti~~IA~~A----Gvs~~t~Y~yF~sKe~L 95 (260)
T 2of7_A 55 AATYGLIRQQG--YEATTVEQIAERA----EVSPSTVLRYFPTREDI 95 (260)
T ss_dssp HHHHHHHHHHC--STTCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhC--cccccHHHHHHHh----CCChHHHHHHcCCHHHH
Confidence 34444577774 4455677789999 99999999999986544
No 228
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=21.62 E-value=35 Score=24.26 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 81 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~k 81 (162)
+..-...|.... .......+||+.. |++...|...|.||-.=..
T Consensus 21 l~aA~~lf~~~G--~~~~s~~~IA~~a----gvs~~t~Y~~F~sKe~L~~ 64 (221)
T 3c2b_A 21 LDQALRLLVEGG--EKALTTSGLARAA----NCSKESLYKWFGDRDGLLA 64 (221)
T ss_dssp HHHHHHHHHHHC--GGGCCHHHHHHHH----TCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCC--cccCCHHHHHHHh----CCCHHHHHHhCCCHHHHHH
Confidence 344445577774 4445677889999 9999999999999765443
No 229
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=21.51 E-value=45 Score=20.18 Aligned_cols=41 Identities=5% Similarity=-0.030 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..++.+.+..+...... ...+||..+ |++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~gl--------tq~elA~~~----gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL--------TQKEASEIF----GGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC--------CHHHHHHHH----CSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC--------CHHHHHHHh----CcCHHHHHHHHcCCC
Confidence 36788887777654322 356789999 999999999987654
No 230
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=21.38 E-value=33 Score=24.39 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.....|.... .......+||+.. |++...|...|.+|-.=.
T Consensus 31 aA~~lf~~~G--~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L~ 71 (214)
T 2zb9_A 31 AVGELLLTEG--TAQLTFERVARVS----GVSKTTLYKWWPSKGALA 71 (214)
T ss_dssp HHHHHHHHHC--GGGCCHHHHHHHH----CCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHhC--cccCCHHHHHHHH----CCCHHHHHHHCCCHHHHH
Confidence 3444577774 3445677789899 999999999999975443
No 231
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=21.28 E-value=34 Score=24.17 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 34 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 34 ~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
.-...|.... | ......+||+.. |++...|..+|.||-.=.
T Consensus 19 aA~~lf~~~G-~-~~~s~~~IA~~a----gvs~~t~Y~~F~sK~~L~ 59 (212)
T 2ras_A 19 VAQAIVEERG-G-AGLTLSELAARA----GISQANLSRYFETREDLM 59 (212)
T ss_dssp HHHHHHHHHT-S-SCCCHHHHHHHH----TSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHhC-c-ccCcHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 3345577774 4 344567789999 999999999999976543
No 232
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=20.98 E-value=42 Score=23.77 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 35 LEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 35 Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-...|.... | ......+||+.. |++...|..+|.||-.=
T Consensus 19 A~~lf~~~G-~-~~~s~~~IA~~a----Gvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 19 ALETFYRKG-I-ARTSLNEIAQAA----GVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHC-T-TTCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhC-c-ccCCHHHHHHHH----CcCHHHHHHHCCCHHHH
Confidence 344587874 4 445577789999 99999999999997643
No 233
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=20.97 E-value=1.4e+02 Score=21.57 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 25 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 25 t~ft~~ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
..+|+.+..+|+-+.+.- ..++||..| +++++.|++...+=+.|
T Consensus 148 ~~LT~rE~~vL~~l~~g~-------s~~eIa~~l----~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEGL-------TNKQIADRM----FLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTSCHHHHHHHHHHHTTC-------CHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCC-------CHHHHHHHh----CCCHHHHHHHHHHHHHH
Confidence 458999988887665432 357889999 99999999988754433
No 234
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.96 E-value=35 Score=20.64 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 18 q~~lA~~~----gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEM----GISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTCCS
T ss_pred HHHHHHHh----CCCHHHHHHHHcCCC
Confidence 46789999 999999999987654
No 235
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=20.86 E-value=41 Score=24.03 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 31 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 31 ql~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
-+..-...|.... | ......+||+.. |++...|...|.||-.=
T Consensus 16 Il~aA~~lf~~~G-~-~~~s~~~IA~~a----GvskgtlY~~F~sKe~L 58 (219)
T 2w53_A 16 ILDAAEACFHEHG-V-ARTTLEMIGARA----GYTRGAVYWHFKNKSEV 58 (219)
T ss_dssp HHHHHHHHHHHHC-T-TTCCHHHHHHHH----TSCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHhC-c-ccCCHHHHHHHh----CCCchHHhhcCCCHHHH
Confidence 3445556688874 4 455677889999 99999999999997543
No 236
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.83 E-value=34 Score=24.41 Aligned_cols=42 Identities=12% Similarity=0.336 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+..-...|.+.. | ......+||+.. |++...|...|.||-.=
T Consensus 14 l~aA~~lf~~~G-y-~~~s~~~IA~~A----Gvs~gt~Y~yF~sKe~L 55 (206)
T 1vi0_A 14 IDAAVEVIAENG-Y-HQSQVSKIAKQA----GVADGTIYLYFKNKEDI 55 (206)
T ss_dssp HHHHHHHHHHHC-G-GGCCHHHHHHHH----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhC-c-ccCCHHHHHHHh----CCChhHHHHHcCCHHHH
Confidence 444455577774 3 345577788899 99999999999997543
No 237
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.83 E-value=38 Score=23.87 Aligned_cols=42 Identities=7% Similarity=0.376 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 32 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 32 l~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
+......|.... | ......+||+.. |++...+...|.||-.=
T Consensus 17 l~aA~~lf~~~G-~-~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~L 58 (216)
T 3f0c_A 17 INAAQKRFAHYG-L-CKTTMNEIASDV----GMGKASLYYYFPDKETL 58 (216)
T ss_dssp HHHHHHHHHHHC-S-SSCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcC-C-CcCCHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 444455688874 4 445567789999 99999999999997543
No 238
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=20.82 E-value=36 Score=20.61 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhhH
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNRR 77 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNRR 77 (162)
..+||..+ |++...|..|..+++
T Consensus 26 q~~lA~~~----gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFL----GLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHH----TCCHHHHHHHHTTSS
T ss_pred HHHHHHHh----CCCHHHHHHHHcCCC
Confidence 56789999 999999999997754
No 239
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=20.34 E-value=47 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 80 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k~ 80 (162)
......|.... | ......+||+.. |++...|..+|.+|-.=.
T Consensus 48 ~AA~~lf~e~G-~-~~~S~~~IA~~A----GVs~~tlY~hF~sKe~Ll 89 (273)
T 3c07_A 48 ETAMRLFQERG-Y-DRTTMRAIAQEA----GVSVGNAYYYFAGKEHLI 89 (273)
T ss_dssp HHHHHHHHHTC-S-TTCCHHHHHHHH----TSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHhCC-c-cccCHHHHHHHH----CCCHHHHHHHcCCHHHHH
Confidence 34445588774 4 455677789999 999999999999876543
No 240
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=20.32 E-value=43 Score=23.58 Aligned_cols=40 Identities=8% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 78 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~ 78 (162)
..-...|.... | ......+||+.. |++...+...|.||-.
T Consensus 16 ~aA~~lf~~~G-~-~~~t~~~Ia~~A----gvs~gt~Y~yF~sKe~ 55 (204)
T 3anp_C 16 RAAMELFRNRG-F-QETTATEIAKAA----HVSRGTFFNYYPYKEA 55 (204)
T ss_dssp HHHHHHHHHHC-T-TTCCHHHHHHHH----TSCHHHHHHHCSSTHH
T ss_pred HHHHHHHHHcC-c-ccccHHHHHHHc----CCchHHHHHHcCCHHH
Confidence 34445577774 4 345577789999 9999999999999754
No 241
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=20.15 E-value=25 Score=24.42 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCccchhhhhhhhHHH
Q 031304 33 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 79 (162)
Q Consensus 33 ~~Le~~F~~~~~yp~~~~r~~LA~~l~~~~~ls~~~V~iWFqNRR~k 79 (162)
......|.... .......+||+.. |++...+..+|.||-.=
T Consensus 21 ~aA~~l~~~~G--~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L 61 (191)
T 4aci_A 21 EGARRCFAEHG--YEGATVRRLEEAT----GKSRGAIFHHFGDKENL 61 (191)
T ss_dssp HHHHHHHHHHH--HHHCCHHHHHHHH----TCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHhC--cccCCHHHHHHHH----CCCchHHHHHCCCHHHH
Confidence 34444566663 4445677889999 99999999999987543
No 242
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.06 E-value=39 Score=20.57 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhh
Q 031304 51 IQDMTAELAKHGQISETNVYNWFQNR 76 (162)
Q Consensus 51 r~~LA~~l~~~~~ls~~~V~iWFqNR 76 (162)
..+||..+ |++...|..|-.++
T Consensus 30 q~elA~~~----gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARL----GRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHH----TSCHHHHHHHHTTS
T ss_pred HHHHHHHH----CcCHHHHHHHHCCC
Confidence 46788889 99999999998765
Done!