Your job contains 1 sequence.
>031306
MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCS
FVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLA
RTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031306
(161 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2029944 - symbol:AT1G29070 species:3702 "Arabi... 340 6.9e-31 1
TIGR_CMR|ECH_0440 - symbol:ECH_0440 "ribosomal protein L3... 104 7.0e-06 1
TIGR_CMR|CBU_1917 - symbol:CBU_1917 "ribosomal protein L3... 103 9.0e-06 1
TIGR_CMR|CHY_0001 - symbol:CHY_0001 "ribosomal protein L3... 102 1.1e-05 1
TIGR_CMR|NSE_0856 - symbol:NSE_0856 "ribosomal protein L3... 102 1.1e-05 1
TIGR_CMR|APH_0309 - symbol:APH_0309 "ribosomal protein L3... 101 1.5e-05 1
TIGR_CMR|CPS_5053 - symbol:CPS_5053 "ribosomal protein L3... 97 3.9e-05 1
TIGR_CMR|SO_0007 - symbol:SO_0007 "ribosomal protein L34"... 96 5.0e-05 1
ASPGD|ASPL0000075007 - symbol:AN11230 species:162425 "Eme... 95 6.3e-05 1
UNIPROTKB|P0A7P5 - symbol:rpmH "50S ribosomal subunit pro... 95 6.3e-05 1
UNIPROTKB|Q9KVY1 - symbol:rpmH "50S ribosomal protein L34... 95 6.3e-05 1
TIGR_CMR|VC_0007 - symbol:VC_0007 "ribosomal protein L34"... 95 6.3e-05 1
TIGR_CMR|CJE_1041 - symbol:CJE_1041 "ribosomal protein L3... 93 0.00010 1
TIGR_CMR|BA_5738 - symbol:BA_5738 "ribosomal protein L34"... 90 0.00021 1
TIGR_CMR|SPO_0538 - symbol:SPO_0538 "ribosomal protein L3... 86 0.00057 1
POMBASE|SPBC21C3.04c - symbol:SPBC21C3.04c "mitochondrial... 86 0.00057 1
>TAIR|locus:2029944 [details] [associations]
symbol:AT1G29070 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000271 Pfam:PF00468
ProDom:PD003101 PROSITE:PS00784 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:AC021043 EMBL:AY091237
EMBL:AY063876 EMBL:AY084670 IPI:IPI00533267 PIR:A86413
RefSeq:NP_174202.1 UniGene:At.27447 ProteinModelPortal:Q9LP37
SMR:Q9LP37 STRING:Q9LP37 PRIDE:Q9LP37 EnsemblPlants:AT1G29070.1
GeneID:839781 KEGG:ath:AT1G29070 GeneFarm:216 TAIR:At1g29070
eggNOG:NOG308670 HOGENOM:HOG000154136 InParanoid:Q9LP37 OMA:GKAALCM
PhylomeDB:Q9LP37 ProtClustDB:CLSN2679668 Genevestigator:Q9LP37
GermOnline:AT1G29070 Uniprot:Q9LP37
Length = 157
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 81/164 (49%), Positives = 96/164 (58%)
Query: 1 MASLS--ITTSIPPPWLTSKSTHHSRRIPSASLILRTGRXXXXXXXXXXXXXXXRPGXXX 58
MASLS + S +++ +PSASL LRTG
Sbjct: 1 MASLSTSVVASASSRLWNPAASNGKICVPSASLSLRTGCRRSSSSLTSSASSQL------ 54
Query: 59 XXXXXXXXXXXXXXXXXXGLSLGLDFNSN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRK 117
GLS+ D +S +G+ ++R+GLVVRAGKAALCQTKR+RSRK
Sbjct: 55 -LHCSFLSSPVSLASPFSGLSIAFDLSSQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRK 113
Query: 118 SLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
SLARTHGFRRRMRTTSGRA +KRRRAKGRW LCPKS P+SGKRA
Sbjct: 114 SLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPSSGKRA 157
>TIGR_CMR|ECH_0440 [details] [associations]
symbol:ECH_0440 "ribosomal protein L34" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 HAMAP:MF_00391 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914 ProtClustDB:PRK00399
PANTHER:PTHR14503 TIGRFAMs:TIGR01030 RefSeq:YP_507258.1
ProteinModelPortal:Q2GH25 SMR:Q2GH25 STRING:Q2GH25 GeneID:3927217
KEGG:ech:ECH_0440 PATRIC:20576353
BioCyc:ECHA205920:GJNR-441-MONOMER Uniprot:Q2GH25
Length = 44
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 23/36 (63%), Positives = 24/36 (66%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
SR R HGFR RM T GR IL RRRA+GR VLC
Sbjct: 8 SRIVRKRRHGFRSRMSTKMGRRILNRRRAQGRRVLC 43
>TIGR_CMR|CBU_1917 [details] [associations]
symbol:CBU_1917 "ribosomal protein L34" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000271 InterPro:IPR020939
Pfam:PF00468 ProDom:PD003101 PROSITE:PS00784 HAMAP:MF_00391
GO:GO:0006412 GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003735 eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914
ProtClustDB:PRK00399 PANTHER:PTHR14503 TIGRFAMs:TIGR01030
EMBL:U10529 PIR:I40651 RefSeq:NP_820894.1 ProteinModelPortal:P45647
SMR:P45647 GeneID:1209830 KEGG:cbu:CBU_1917 PATRIC:17932569
BioCyc:CBUR227377:GJ7S-1891-MONOMER Uniprot:P45647
Length = 44
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
S++ RTHGFR RM T +GR +L RRRAKGR
Sbjct: 8 SKQKRNRTHGFRARMATKNGRQVLNRRRAKGR 39
>TIGR_CMR|CHY_0001 [details] [associations]
symbol:CHY_0001 "ribosomal protein L34" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468
ProDom:PD003101 PROSITE:PS00784 HAMAP:MF_00391 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
KO:K02914 ProtClustDB:PRK00399 PANTHER:PTHR14503 TIGRFAMs:TIGR01030
RefSeq:YP_358873.1 ProteinModelPortal:Q3AG61 SMR:Q3AG61
STRING:Q3AG61 GeneID:3726232 KEGG:chy:CHY_0001 PATRIC:21273203
eggNOG:NOG137226 BioCyc:CHYD246194:GJCN-1-MONOMER Uniprot:Q3AG61
Length = 44
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 112 RNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
+NR RK R HGF +RMRT GR ++KRRR KGR
Sbjct: 8 KNRRRK---RVHGFLKRMRTPGGRNVIKRRRLKGR 39
>TIGR_CMR|NSE_0856 [details] [associations]
symbol:NSE_0856 "ribosomal protein L34" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468
ProDom:PD003101 PROSITE:PS00784 HAMAP:MF_00391 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914 PANTHER:PTHR14503
TIGRFAMs:TIGR01030 RefSeq:YP_506723.1 ProteinModelPortal:Q2GCS3
STRING:Q2GCS3 GeneID:3932305 KEGG:nse:NSE_0856 PATRIC:22681709
BioCyc:NSEN222891:GHFU-860-MONOMER Uniprot:Q2GCS3
Length = 44
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
R HGFR RM + SGRAI+ RR KGR VLC
Sbjct: 14 RRHGFRARMASKSGRAIINNRRRKGRHVLC 43
>TIGR_CMR|APH_0309 [details] [associations]
symbol:APH_0309 "ribosomal protein L34" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 HAMAP:MF_00391 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
RefSeq:YP_504921.1 ProteinModelPortal:Q2GL30 SMR:Q2GL30
STRING:Q2GL30 GeneID:3931183 KEGG:aph:APH_0309 PATRIC:20949200
eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914 ProtClustDB:PRK00399
BioCyc:APHA212042:GHPM-339-MONOMER PANTHER:PTHR14503
TIGRFAMs:TIGR01030 Uniprot:Q2GL30
Length = 44
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
SR R HGFR RM T GR IL RRRA+GR +LC
Sbjct: 8 SRIVRKRRHGFRARMSTKWGRRILNRRRAQGRSILC 43
>TIGR_CMR|CPS_5053 [details] [associations]
symbol:CPS_5053 "ribosomal protein L34" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 HAMAP:MF_00391 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914 PANTHER:PTHR14503
TIGRFAMs:TIGR01030 RefSeq:YP_271691.1 ProteinModelPortal:Q47U32
SMR:Q47U32 STRING:Q47U32 GeneID:3521639 KEGG:cps:CPS_5053
PATRIC:21472885 BioCyc:CPSY167879:GI48-5053-MONOMER Uniprot:Q47U32
Length = 44
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
R HGFR RM T +GRA++ RRRAKGR
Sbjct: 14 RNHGFRARMATKNGRAVIARRRAKGR 39
>TIGR_CMR|SO_0007 [details] [associations]
symbol:SO_0007 "ribosomal protein L34" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 HAMAP:MF_00391 GO:GO:0006412 GO:GO:0005840
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
HOGENOM:HOG000111572 KO:K02914 ProtClustDB:PRK00399
PANTHER:PTHR14503 TIGRFAMs:TIGR01030 eggNOG:NOG137226
RefSeq:NP_715649.1 ProteinModelPortal:Q8EKT3 SMR:Q8EKT3
GeneID:1167905 KEGG:son:SO_0007 PATRIC:23519705 Uniprot:Q8EKT3
Length = 45
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
N RK R+HGFR RM T GR +L RRRAKGR
Sbjct: 10 NLKRK---RSHGFRARMATAGGRKVLARRRAKGR 40
>ASPGD|ASPL0000075007 [details] [associations]
symbol:AN11230 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000271 Pfam:PF00468 ProDom:PD003101
HAMAP:MF_00391 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:BN001303 PANTHER:PTHR14503 TIGRFAMs:TIGR01030
HOGENOM:HOG000111573 EnsemblFungi:CADANIAT00005979 Uniprot:C8V8G8
Length = 138
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
N SR+ R HGF R+R+ SG+ IL RRRAKGR
Sbjct: 100 NPSRRVQKRRHGFLARLRSKSGQKILARRRAKGR 133
>UNIPROTKB|P0A7P5 [details] [associations]
symbol:rpmH "50S ribosomal subunit protein L34"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR000271
InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101 PROSITE:PS00784
HAMAP:MF_00391 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:L10328 PDB:2VHM PDBsum:2VHM EMBL:J01602 EMBL:X01861 PDB:2RDO
PDBsum:2RDO PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14
PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM
PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG
PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ
PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N
PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK
PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20
PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19
PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD
PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB
PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX
PDBsum:3BBX eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914
ProtClustDB:PRK00399 PANTHER:PTHR14503 TIGRFAMs:TIGR01030
EMBL:M11056 RefSeq:NP_418158.1 RefSeq:YP_491732.1
ProteinModelPortal:P0A7P5 SMR:P0A7P5 IntAct:P0A7P5 PRIDE:P0A7P5
EnsemblBacteria:EBESCT00000002735 EnsemblBacteria:EBESCT00000002736
EnsemblBacteria:EBESCT00000002737 EnsemblBacteria:EBESCT00000018019
GeneID:12930542 GeneID:948216 KEGG:ecj:Y75_p3470 KEGG:eco:b3703
PATRIC:32122903 EchoBASE:EB0885 EcoGene:EG10892
BioCyc:EcoCyc:EG10892-MONOMER BioCyc:ECOL316407:JW3680-MONOMER
EvolutionaryTrace:P0A7P5 Genevestigator:P0A7P5 Uniprot:P0A7P5
Length = 46
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
R+HGFR RM T +GR +L RRRAKGR
Sbjct: 14 RSHGFRARMATKNGRQVLARRRAKGR 39
>UNIPROTKB|Q9KVY1 [details] [associations]
symbol:rpmH "50S ribosomal protein L34" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000271 InterPro:IPR020939
Pfam:PF00468 ProDom:PD003101 PROSITE:PS00784 HAMAP:MF_00391
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 eggNOG:COG0230 KO:K02914 ProtClustDB:PRK00399
PANTHER:PTHR14503 TIGRFAMs:TIGR01030 PIR:H82375 RefSeq:NP_062591.1
ProteinModelPortal:Q9KVY1 SMR:Q9KVY1 DNASU:2614454 GeneID:2614454
KEGG:vch:VC0007 PATRIC:20079062 Uniprot:Q9KVY1
Length = 45
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
RTHGFR RM T +GR +L RRAKGR
Sbjct: 15 RTHGFRARMATANGRKVLNARRAKGR 40
>TIGR_CMR|VC_0007 [details] [associations]
symbol:VC_0007 "ribosomal protein L34" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 HAMAP:MF_00391 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0230 KO:K02914 ProtClustDB:PRK00399 PANTHER:PTHR14503
TIGRFAMs:TIGR01030 PIR:H82375 RefSeq:NP_062591.1
ProteinModelPortal:Q9KVY1 SMR:Q9KVY1 DNASU:2614454 GeneID:2614454
KEGG:vch:VC0007 PATRIC:20079062 Uniprot:Q9KVY1
Length = 45
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
RTHGFR RM T +GR +L RRAKGR
Sbjct: 15 RTHGFRARMATANGRKVLNARRAKGR 40
>TIGR_CMR|CJE_1041 [details] [associations]
symbol:CJE_1041 "ribosomal protein L34" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468
ProDom:PD003101 PROSITE:PS00784 HAMAP:MF_00391 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914 ProtClustDB:PRK00399
PANTHER:PTHR14503 TIGRFAMs:TIGR01030 RefSeq:YP_179037.1
ProteinModelPortal:Q5HUJ8 SMR:Q5HUJ8 STRING:Q5HUJ8 GeneID:3231551
KEGG:cjr:CJE1041 PATRIC:20043883
BioCyc:CJEJ195099:GJC0-1068-MONOMER Uniprot:Q5HUJ8
Length = 44
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
RTHGFR RM+T +GR ++ RRAKGR
Sbjct: 14 RTHGFRVRMKTKNGRKVINARRAKGR 39
>TIGR_CMR|BA_5738 [details] [associations]
symbol:BA_5738 "ribosomal protein L34" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000271 InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 HAMAP:MF_00391 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0230 HOGENOM:HOG000111572 KO:K02914 ProtClustDB:PRK00399
PANTHER:PTHR14503 TIGRFAMs:TIGR01030 RefSeq:NP_847883.1
RefSeq:YP_022424.1 RefSeq:YP_031578.1 ProteinModelPortal:Q81JG9
SMR:Q81JG9 DNASU:1085511 EnsemblBacteria:EBBACT00000009163
EnsemblBacteria:EBBACT00000018746 EnsemblBacteria:EBBACT00000021111
GeneID:1085511 GeneID:2815594 GeneID:2848456 KEGG:ban:BA_5738
KEGG:bar:GBAA_5738 KEGG:bat:BAS5341
BioCyc:BANT260799:GJAJ-5418-MONOMER
BioCyc:BANT261594:GJ7F-5594-MONOMER Uniprot:Q81JG9
Length = 44
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
+++ ++ HGFR RM T +GR +L RR KGR VL
Sbjct: 8 NKRKRSKVHGFRSRMSTANGRKVLAARRRKGRKVL 42
>TIGR_CMR|SPO_0538 [details] [associations]
symbol:SPO_0538 "ribosomal protein L34" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000271
InterPro:IPR020939 Pfam:PF00468 ProDom:PD003101 PROSITE:PS00784
HAMAP:MF_00391 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0230
HOGENOM:HOG000111572 KO:K02914 ProtClustDB:PRK00399
PANTHER:PTHR14503 TIGRFAMs:TIGR01030 RefSeq:YP_165800.2
ProteinModelPortal:Q5LW05 SMR:Q5LW05 GeneID:3195490
KEGG:sil:SPO0538 PATRIC:23374339 Uniprot:Q5LW05
Length = 44
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
R HGFR RM T +GR IL RRA+GR
Sbjct: 14 RRHGFRARMATKAGRKILNARRARGR 39
>POMBASE|SPBC21C3.04c [details] [associations]
symbol:SPBC21C3.04c "mitochondrial ribosomal protein
subunit L34 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR000271 Pfam:PF00468 ProDom:PD003101
PROSITE:PS00784 PomBase:SPBC21C3.04c EMBL:CU329671 GO:GO:0005762
GO:GO:0003735 GO:GO:0032543 eggNOG:COG0230 PANTHER:PTHR14503
TIGRFAMs:TIGR01030 HOGENOM:HOG000111573 PIR:T50348
RefSeq:NP_596584.1 ProteinModelPortal:Q9P7L9 SMR:Q9P7L9
STRING:Q9P7L9 EnsemblFungi:SPBC21C3.04c.1 GeneID:2540621
KEGG:spo:SPBC21C3.04c OMA:FGFLARM OrthoDB:EOG4GBBH1
NextBio:20801746 Uniprot:Q9P7L9
Length = 108
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
NR RK R HGF R+R+ +GR +L+ RR KGR L
Sbjct: 73 NRKRK---RKHGFLSRIRSVNGRRVLRDRRQKGRMYL 106
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.131 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 161 125 0.00091 102 3 11 22 0.49 30
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 530 (56 KB)
Total size of DFA: 111 KB (2075 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.94u 0.12s 11.06t Elapsed: 00:00:01
Total cpu time: 10.94u 0.12s 11.06t Elapsed: 00:00:01
Start: Fri May 10 21:10:12 2013 End: Fri May 10 21:10:13 2013