BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031306
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LP37|RK34_ARATH 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana
GN=RPL34 PE=2 SV=1
Length = 157
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 26 IPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFN 85
+PSASL LRTG + + +S + LLHCSF+SS + + S FSGLS+ D +
Sbjct: 28 VPSASLSLRTG----CRRSSSSLTSSASSQLLHCSFLSSPV---SLASPFSGLSIAFDLS 80
Query: 86 SN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAK 144
S +G+ ++R+GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAK
Sbjct: 81 SQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAK 140
Query: 145 GRWVLCPKSYPNSGKRA 161
GRW LCPKS P+SGKRA
Sbjct: 141 GRWNLCPKSNPSSGKRA 157
>sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea
GN=RPL34 PE=1 SV=1
Length = 152
Score = 129 bits (323), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 112/161 (69%), Gaps = 11/161 (6%)
Query: 1 MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCS 60
MA+LS+ ++ +T+ R PSASL TG + + V+ N S +R G LHCS
Sbjct: 1 MATLSLLSTGVGAAITN-------RTPSASLTFITGSRTTNKRVSFNGGS-ARSGSLHCS 52
Query: 61 FVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLA 120
F++ S S+ S FSGLSLGLD SN GV ++ + VVRAGKAALC TKR+RSRKSLA
Sbjct: 53 FLAPS---SSLSSNFSGLSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLA 109
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNSGKRA 161
RTHGFR RM TTSGRA+LKRRRAKGR +LC K+ P+SGKRA
Sbjct: 110 RTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSSGKRA 150
>sp|Q7X5L7|RL34_THEBO 50S ribosomal protein L34 OS=Thermus brockianus GN=rpmH PE=3 SV=1
Length = 48
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK 152
+R+ A+THGFR RM+T GR +LKRRR KGRW L PK
Sbjct: 8 NRRKRAKTHGFRARMKTPGGRKVLKRRRQKGRWRLTPK 45
>sp|Q7X5K9|RL34_THESC 50S ribosomal protein L34 OS=Thermus scotoductus GN=rpmH PE=3 SV=1
Length = 48
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK 152
+R+ A+THGFR RMRT GR +LKRRR KGRW L P+
Sbjct: 8 NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPR 45
>sp|Q7X5L1|RL34_THEOS 50S ribosomal protein L34 OS=Thermus oshimai GN=rpmH PE=3 SV=1
Length = 48
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSY 154
+R+ A+THGFR RMRT GR +LKRRR KGRW L P+ +
Sbjct: 8 NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPRVH 47
>sp|P80340|RL34_THET8 50S ribosomal protein L34 OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=rpmH PE=1 SV=3
Length = 49
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
+R+ A+THGFR RMRT GR +LKRRR KGRW L P
Sbjct: 8 NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44
>sp|B5EJJ2|RL34_ACIF5 50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rpmH PE=3 SV=1
Length = 44
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
RTHGFR RM T SGR +LKRRRAKGR LCP
Sbjct: 14 RTHGFRARMATKSGRLVLKRRRAKGRQRLCP 44
>sp|B7J3D6|RL34_ACIF2 50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpmH PE=3 SV=1
Length = 44
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
RTHGFR RM T SGR +LKRRRAKGR LCP
Sbjct: 14 RTHGFRARMATKSGRLVLKRRRAKGRQRLCP 44
>sp|Q0A4L3|RL34_ALHEH 50S ribosomal protein L34 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rpmH PE=3 SV=1
Length = 44
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
RTHGFR RM T +GRA+L RRRAKGR LCP
Sbjct: 14 RTHGFRARMATKNGRAVLARRRAKGRHRLCP 44
>sp|Q04CX6|RL34_OENOB 50S ribosomal protein L34 OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=rpmH PE=3 SV=1
Length = 44
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
++ L R HGFR+RM T +GR +L RRRAKGR VL
Sbjct: 8 KKRHLQRVHGFRKRMSTANGRKVLARRRAKGRKVLA 43
>sp|Q9RSH2|RL34_DEIRA 50S ribosomal protein L34 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=rpmH PE=1 SV=1
Length = 47
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
NR R A+THGFR RM+T SGR IL RRRAKGR L
Sbjct: 9 NRKR---AKTHGFRARMKTKSGRNILARRRAKGRHQLT 43
>sp|C1CZV9|RL34_DEIDV 50S ribosomal protein L34 OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=rpmH PE=3 SV=1
Length = 47
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
A+THGFR RM+T SGR IL RRRAKGR L
Sbjct: 13 AKTHGFRARMKTKSGRNILARRRAKGRHQLT 43
>sp|B2FPA7|RL34_STRMK 50S ribosomal protein L34 OS=Stenotrophomonas maltophilia (strain
K279a) GN=rpmH PE=3 SV=1
Length = 46
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
R HGFR RM+T GR IL RRRAKGR VL
Sbjct: 16 RDHGFRARMKTADGRKILSRRRAKGRKVL 44
>sp|B4SPG2|RL34_STRM5 50S ribosomal protein L34 OS=Stenotrophomonas maltophilia (strain
R551-3) GN=rpmH PE=3 SV=1
Length = 46
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
R HGFR RM+T GR IL RRRAKGR VL
Sbjct: 16 RDHGFRARMKTADGRKILSRRRAKGRKVL 44
>sp|Q7X5L3|RL34_THEFI 50S ribosomal protein L34 OS=Thermus filiformis GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
+R+ A+THGFR RM+T SGR +LKRRR KGR
Sbjct: 8 NRRKRAKTHGFRARMKTKSGRKVLKRRRQKGR 39
>sp|Q3J6L6|RL34_NITOC 50S ribosomal protein L34 OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 23/30 (76%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
RTHGFR RMRT GRAI+ RRRAKGR L
Sbjct: 14 RTHGFRARMRTQGGRAIINRRRAKGRKRLT 43
>sp|Q0C551|RL34_HYPNA 50S ribosomal protein L34 OS=Hyphomonas neptunium (strain ATCC
15444) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GR +L RRRAKGR L
Sbjct: 13 ARTHGFRERMSTKNGRKVLARRRAKGRKTLT 43
>sp|C3K1G4|RL34_PSEFS 50S ribosomal protein L34 OS=Pseudomonas fluorescens (strain SBW25)
GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRARLA 43
>sp|Q4K394|RL34_PSEF5 50S ribosomal protein L34 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRARLA 43
>sp|Q4ZL08|RL34_PSEU2 50S ribosomal protein L34 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q87TR8|RL34_PSESM 50S ribosomal protein L34 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q48BE9|RL34_PSE14 50S ribosomal protein L34 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q6ABV3|RL34_LEIXX 50S ribosomal protein L34 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpmH PE=3 SV=1
Length = 45
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
A+THGFR RMRT +GRAIL RRAKGR L
Sbjct: 14 AKTHGFRLRMRTRAGRAILSARRAKGRQKL 43
>sp|Q8F9L6|RL34_LEPIN 50S ribosomal protein L34 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=rpmH
PE=3 SV=1
Length = 53
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
SR ARTHGFR RM T GR +L RRR KGR+ L
Sbjct: 8 SRVKRARTHGFRARMATAGGRKVLSRRRKKGRYKLT 43
>sp|Q72VZ0|RL34_LEPIC 50S ribosomal protein L34 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=rpmH PE=3 SV=1
Length = 53
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
SR ARTHGFR RM T GR +L RRR KGR+ L
Sbjct: 8 SRVKRARTHGFRARMATAGGRKVLSRRRKKGRYKLT 43
>sp|P0A162|RL34_PSEPU 50S ribosomal protein L34 OS=Pseudomonas putida GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|P0A161|RL34_PSEPK 50S ribosomal protein L34 OS=Pseudomonas putida (strain KT2440)
GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|B0KEU8|RL34_PSEPG 50S ribosomal protein L34 OS=Pseudomonas putida (strain GB-1)
GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q1I2H1|RL34_PSEE4 50S ribosomal protein L34 OS=Pseudomonas entomophila (strain L48)
GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q04XE0|RL34_LEPBL 50S ribosomal protein L34 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=rpmH PE=3 SV=1
Length = 53
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
SR ARTHGFR RM T GR +L RRR KGR+ L
Sbjct: 8 SRVKRARTHGFRARMATAGGRKVLSRRRKKGRYKLT 43
>sp|Q04W32|RL34_LEPBJ 50S ribosomal protein L34 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=rpmH PE=3 SV=1
Length = 53
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 24/36 (66%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
SR ARTHGFR RM T GR +L RRR KGR+ L
Sbjct: 8 SRVKRARTHGFRARMATAGGRKVLSRRRKKGRYKLT 43
>sp|Q03UI8|RL34_LEUMM 50S ribosomal protein L34 OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=rpmH PE=3
SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
R HGFR+RM T++GR +L RRRAKGR VL
Sbjct: 13 ERVHGFRKRMSTSNGRKVLARRRAKGRKVL 42
>sp|B1MWS4|RL34_LEUCK 50S ribosomal protein L34 OS=Leuconostoc citreum (strain KM20)
GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
R HGFR+RM T++GR +L RRRAKGR VL
Sbjct: 13 ERVHGFRKRMSTSNGRKVLARRRAKGRKVL 42
>sp|A4Y1A3|RL34_PSEMY 50S ribosomal protein L34 OS=Pseudomonas mendocina (strain ymp)
GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
ARTHGFR RM T +GRA+L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLT 43
>sp|P25820|RL34_STRBI 50S ribosomal protein L34 OS=Streptomyces bikiniensis GN=rpmH PE=3
SV=1
Length = 45
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
A+THGFR RMRT +GRAIL RRAKGR L
Sbjct: 14 AKTHGFRLRMRTRAGRAILANRRAKGRASL 43
>sp|B2GA54|RL34_LACRJ 50S ribosomal protein L34 OS=Lactobacillus reuteri (strain JCM
1112) GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
AR HGFR+RM T++GR +L RRR KGR VL
Sbjct: 13 ARVHGFRKRMSTSNGRKVLARRRQKGRKVL 42
>sp|A5VMV2|RL34_LACRD 50S ribosomal protein L34 OS=Lactobacillus reuteri (strain DSM
20016) GN=rpmH PE=3 SV=1
Length = 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
AR HGFR+RM T++GR +L RRR KGR VL
Sbjct: 13 ARVHGFRKRMSTSNGRKVLARRRQKGRKVL 42
>sp|A5EY32|RL34_DICNV 50S ribosomal protein L34 OS=Dichelobacter nodosus (strain
VCS1703A) GN=rpmH PE=3 SV=1
Length = 45
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 118 SLARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
S RTHGFR RM T +GR +L RRRAKGR+ L
Sbjct: 12 SRKRTHGFRARMATKNGRQVLSRRRAKGRYRLT 44
>sp|B8GRD4|RL34_THISH 50S ribosomal protein L34 OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=rpmH PE=3 SV=1
Length = 44
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLCP 151
RTHGFR RM T GR +L RRAKGR LCP
Sbjct: 14 RTHGFRARMATRGGRKVLAARRAKGRVRLCP 44
>sp|Q1IY21|RL34_DEIGD 50S ribosomal protein L34 OS=Deinococcus geothermalis (strain DSM
11300) GN=rpmH PE=3 SV=1
Length = 47
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
A+THGFR RM+T +GR +L RRRAKGR L
Sbjct: 13 AKTHGFRARMKTKAGRNVLARRRAKGRHRLT 43
>sp|B8F7T1|RL34_HAEPS 50S ribosomal protein L34 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
ARTHGFR RM T +GR +L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|Q7VN33|RL34_HAEDU 50S ribosomal protein L34 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
ARTHGFR RM T +GR +L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|B0BTL8|RL34_ACTPJ 50S ribosomal protein L34 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
ARTHGFR RM T +GR +L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|B3H308|RL34_ACTP7 50S ribosomal protein L34 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
ARTHGFR RM T +GR +L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|A3N3N0|RL34_ACTP2 50S ribosomal protein L34 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
ARTHGFR RM T +GR +L RRRAKGR L
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|A8EY60|RL34_RICCK 50S ribosomal protein L34 OS=Rickettsia canadensis (strain McKiel)
GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 23/29 (79%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
R HGFR RM T SGRAIL+RRRAKGR L
Sbjct: 14 RRHGFRARMATPSGRAILRRRRAKGRHKL 42
>sp|Q03N60|RL34_LACBA 50S ribosomal protein L34 OS=Lactobacillus brevis (strain ATCC 367
/ JCM 1170) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
+R HGFR+RM T++GR +L RRR KGR VL
Sbjct: 13 SRVHGFRKRMSTSNGRQVLARRRQKGRKVL 42
>sp|Q68WC9|RL34_RICTY 50S ribosomal protein L34 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVL 149
R HGFR RM T +GRAILK+RRAKGR L
Sbjct: 14 RRHGFRSRMITVTGRAILKKRRAKGRHKL 42
>sp|Q2GH25|RL34_EHRCR 50S ribosomal protein L34 OS=Ehrlichia chaffeensis (strain
Arkansas) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 22/30 (73%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
R HGFR RM T GR IL RRRA+GR VLC
Sbjct: 14 RRHGFRSRMSTKMGRRILNRRRAQGRRVLC 43
>sp|Q3YRN8|RL34_EHRCJ 50S ribosomal protein L34 OS=Ehrlichia canis (strain Jake) GN=rpmH
PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 22/30 (73%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRWVLC 150
R HGFR RM T GR IL RRRA+GR VLC
Sbjct: 14 RRHGFRSRMSTKMGRRILNRRRAQGRRVLC 43
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,180,758
Number of Sequences: 539616
Number of extensions: 1947147
Number of successful extensions: 6058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5302
Number of HSP's gapped (non-prelim): 764
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)