Query 031306
Match_columns 161
No_of_seqs 124 out of 624
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 19:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_4 Ribosomal protein L34; 100.0 1.7E-46 5.9E-51 297.3 0.1 147 1-161 1-150 (152)
2 3v2d_7 50S ribosomal protein L 99.8 5.6E-20 1.9E-24 123.4 2.0 47 104-155 2-48 (49)
3 3r8s_2 50S ribosomal protein L 99.8 1.7E-19 5.7E-24 119.8 2.1 44 104-152 2-45 (46)
4 2ftc_Q L34MT, MRP-L34, 39S rib 99.7 2.5E-17 8.6E-22 105.6 2.7 33 117-149 6-38 (38)
5 3bbn_T Ribosomal protein S20; 9.2 37 0.0013 27.9 -1.5 60 71-132 51-114 (202)
6 2da5_A Zinc fingers and homeob 7.4 81 0.0028 20.4 -0.3 23 136-158 53-75 (75)
7 3kb4_A ALR8543 protein; alpha- 6.8 1.5E+02 0.0052 23.7 1.1 19 125-143 47-66 (225)
8 3sui_B Transient receptor pote 6.0 1.9E+02 0.0064 18.1 0.9 13 29-41 9-21 (37)
9 2dn0_A Zinc fingers and homeob 5.7 2.9E+02 0.0098 17.6 1.7 24 135-158 53-76 (76)
10 2pq7_A Predicted HD superfamil 5.7 2.6E+02 0.0089 20.8 1.7 18 126-143 187-204 (220)
No 1
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.7e-46 Score=297.31 Aligned_cols=147 Identities=60% Similarity=0.853 Sum_probs=36.7
Q ss_pred CCccc--ccccCCCCCcCCCcCCCcccCCcceeeeecc-cccceeecccCCCCCCCCCceeeeecccccccccccccccc
Q 031306 1 MASLS--ITTSIPPPWLTSKSTHHSRRIPSASLILRTG-RSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSG 77 (161)
Q Consensus 1 ~~s~~--~~~~~~~~w~~~~s~~~~~~~p~asl~~~sg-r~~~~~~~~~~~~~~srs~~L~~sF~ss~~s~sf~~ssfaG 77 (161)
||+++ .++++..+ +..+|+++|+|++| |.....++... +++++|+||||||+++.+ ++++|+|
T Consensus 1 ma~~~~~~~~~~~~~---------~~~~p~~s~s~~~~~r~~~~~~~~~~--~~a~s~~l~~sf~ss~~s---~~ssf~G 66 (152)
T 3bbo_4 1 MATLSLLSTGVGAAI---------TNRTPSASLTFITGSRTTNKRVSFNG--GSARSGSLHCSFLAPSSS---LSSNFSG 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccccccccccccee---------eccCCCcccccccccccccccccccc--ccccCcceeeeecccccc---CCCcccc
Confidence 45444 35666665 67789999999999 77777666666 899999999999999966 7899999
Q ss_pred ccccccccccccccccCCceeEEEecccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecccCCCC
Q 031306 78 LSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYPNS 157 (161)
Q Consensus 78 ~slgl~l~~~~g~~~~rg~~~~Vr~GkRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s~~~~s 157 (161)
++||+||++|+++.++|++++||++||+++++|+++++++||||+|||++||+|++||+||++||+||||+|++++++++
T Consensus 67 ~sl~~~l~~~i~~~~~r~~gl~Vr~Gkr~~~~T~r~pS~~kRkR~HGFraRM~Tk~GRkVL~rRRaKGRk~Ls~s~~~~s 146 (152)
T 3bbo_4 67 LSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNPSS 146 (152)
T ss_dssp -------------------------------------CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC------
T ss_pred cccccccccceeeccCCCcceEEEccCccccccCCCCccceeehhhcHHHHhcChhhHHHHHHHHHhCCcEEeeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 031306 158 GKRA 161 (161)
Q Consensus 158 gk~a 161 (161)
||++
T Consensus 147 Gk~~ 150 (152)
T 3bbo_4 147 GKRA 150 (152)
T ss_dssp ----
T ss_pred CCcC
Confidence 9975
No 2
>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...
Probab=99.77 E-value=5.6e-20 Score=123.42 Aligned_cols=47 Identities=53% Similarity=0.871 Sum_probs=42.1
Q ss_pred ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecccCC
Q 031306 104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPKSYP 155 (161)
Q Consensus 104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s~~~ 155 (161)
||||+++++ +|+|+|||++||+|++||+||++||+|||++|+++++.
T Consensus 2 KRTyQPs~~-----kRkr~hGFraRm~T~~GRkVL~rRR~KGRk~Ls~s~~~ 48 (49)
T 3v2d_7 2 KRTWQPNRR-----KRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRK 48 (49)
T ss_dssp CCSCCCCHH-----HHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSCCCCC
T ss_pred CCCCCCCce-----eechhhcHHHHccCcchhHHHHHHHHcCCcEeeeeccc
Confidence 566666655 89999999999999999999999999999999998763
No 3
>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=99.75 E-value=1.7e-19 Score=119.76 Aligned_cols=44 Identities=45% Similarity=0.641 Sum_probs=39.8
Q ss_pred ccccccccccccccchhhhhhhhhhccChhhHHHHHHHHHcCCceEecc
Q 031306 104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRWVLCPK 152 (161)
Q Consensus 104 kRtl~~TKR~~sr~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~Ls~s 152 (161)
||||+++++ +|+|+|||++||+|++||+||++||+|||++|+++
T Consensus 2 KrTyQPs~~-----kRkr~hGFraRm~T~~GRkvL~rRR~KGRk~Ls~s 45 (46)
T 3r8s_2 2 KRTFQPSVL-----KRNRSHGFRARMATKNGRQVLARRRAKGRARLTVS 45 (46)
T ss_dssp CCSCCCCHH-----HHHHHHSHHHHHTSHHHHHHHHHHHHHTCSCSSCC
T ss_pred CCCCCCCce-----eechhhcHHHHccCcchhHHHHHHHHcCCceeccc
Confidence 566666655 89999999999999999999999999999999985
No 4
>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.66 E-value=2.5e-17 Score=105.65 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=31.6
Q ss_pred cchhhhhhhhhhccChhhHHHHHHHHHcCCceE
Q 031306 117 KSLARTHGFRRRMRTTSGRAILKRRRAKGRWVL 149 (161)
Q Consensus 117 ~kRkR~HGFraRM~T~~GRkVL~RRR~KGRk~L 149 (161)
++|+|+|||++||+|++||+||++||+|||++|
T Consensus 6 ~kRkr~hGFraRm~T~~GRkvl~rRR~KGR~~L 38 (38)
T 2ftc_Q 6 IKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL 38 (38)
T ss_pred ccchhhhcHHHHccChhhHHHHHHHHHcCcccC
Confidence 489999999999999999999999999999986
No 5
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=9.22 E-value=37 Score=27.87 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=19.0
Q ss_pred cccccccccccccccccccccccCCceeEEEe-ccc--ccccccccccc-cchhhhhhhhhhccCh
Q 031306 71 FHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRA-GKA--ALCQTKRNRSR-KSLARTHGFRRRMRTT 132 (161)
Q Consensus 71 ~~ssfaG~slgl~l~~~~g~~~~rg~~~~Vr~-GkR--tl~~TKR~~sr-~kRkR~HGFraRM~T~ 132 (161)
+++||+|..+=-...+.. -...|+. +|+.+ .|- +-...||-+|. ++|.|..-++.+|+|-
T Consensus 51 fs~s~~~~~~~~~~~~~~-~~~~r~~-~v~~a~~~~aN~KSAkKRiRqneKRRlrNka~KS~vRTa 114 (202)
T 3bbn_T 51 FSQSVSQCVAFSTGNLWV-QKPMRQL-IVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTR 114 (202)
T ss_dssp -------------------------------CCCSSCCCCCSSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhcccceeeccccccc-cccccce-eEEeccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777665211112222 1234444 66666 232 23344665554 4677888888888875
No 6
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.36 E-value=81 Score=20.36 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCceEecccCCCCC
Q 031306 136 AILKRRRAKGRWVLCPKSYPNSG 158 (161)
Q Consensus 136 kVL~RRR~KGRk~Ls~s~~~~sg 158 (161)
.-+..||+|-|+.-....+|.+|
T Consensus 53 ~WFqNRR~k~kk~~~~~~~~~~g 75 (75)
T 2da5_A 53 SWFSERRKKVNAEETKKSGPSSG 75 (75)
T ss_dssp HHHHHHTTHHHHSSCSSCCCSCC
T ss_pred HhhHHHHHHHHHhhhcccCCCCC
Confidence 34567888888777777777776
No 7
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=6.84 E-value=1.5e+02 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=14.8
Q ss_pred hhhhcc-ChhhHHHHHHHHH
Q 031306 125 FRRRMR-TTSGRAILKRRRA 143 (161)
Q Consensus 125 FraRM~-T~~GRkVL~RRR~ 143 (161)
.+.+|. ++.||+||+.|-.
T Consensus 47 ~~~~m~~~P~Gr~iL~eRp~ 66 (225)
T 3kb4_A 47 VVAVLSLTPQGKQAFEDRPM 66 (225)
T ss_dssp HHHHHTTSHHHHHHHHHCCC
T ss_pred HHHHHhcCHHHHHHHHhCCC
Confidence 356774 9999999997754
No 8
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=5.98 E-value=1.9e+02 Score=18.12 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=9.3
Q ss_pred ceeeeecccccce
Q 031306 29 ASLILRTGRSSVS 41 (161)
Q Consensus 29 asl~~~sgr~~~~ 41 (161)
.|++|.+||.+-.
T Consensus 9 lsfslrsgrvsgr 21 (37)
T 3sui_B 9 LSFSLRSGRVSGR 21 (37)
T ss_pred cceEeeccccccc
Confidence 4667889987654
No 9
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.67 E-value=2.9e+02 Score=17.57 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCceEecccCCCCC
Q 031306 135 RAILKRRRAKGRWVLCPKSYPNSG 158 (161)
Q Consensus 135 RkVL~RRR~KGRk~Ls~s~~~~sg 158 (161)
+.-+..||+|-|+.-.....|.+|
T Consensus 53 ~~WFqNrR~k~kk~~~~~~~~ssg 76 (76)
T 2dn0_A 53 RKWFSDRRYHCRNLKGSRSGPSSG 76 (76)
T ss_dssp HHHHHHHHHHSSSCCSSSCCCCCC
T ss_pred hHHhHHHhHHHHHhcccCCCCCCC
Confidence 345678888888877666666665
No 10
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=5.65 E-value=2.6e+02 Score=20.77 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.9
Q ss_pred hhhccChhhHHHHHHHHH
Q 031306 126 RRRMRTTSGRAILKRRRA 143 (161)
Q Consensus 126 raRM~T~~GRkVL~RRR~ 143 (161)
-..|.|+.||++...|-+
T Consensus 187 ~~~~~T~~g~~~a~~r~~ 204 (220)
T 2pq7_A 187 PETFWTETARKMAEDRYS 204 (220)
T ss_dssp CTTCSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHH
Confidence 456899999999988854
Done!