Query 031306
Match_columns 161
No_of_seqs 124 out of 624
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 19:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wb9a1 a.113.1.1 (A:270-566) 10.7 54 0.0039 22.6 1.7 23 121-143 21-43 (297)
2 d1hd6a_ a.10.1.1 (A:) ER-22 {E 7.8 37 0.0027 19.8 -0.1 12 4-15 26-37 (37)
3 d2dy1a5 d.58.11.1 (A:570-665) 5.5 1.2E+02 0.0089 18.8 1.5 10 136-145 87-96 (96)
4 d2qgsa1 a.211.1.1 (A:1-216) Un 4.9 1.7E+02 0.012 20.8 2.1 17 127-143 183-199 (216)
5 d2pq7a1 a.211.1.1 (A:1-217) Pr 4.5 1.8E+02 0.013 20.4 2.0 15 128-142 188-202 (217)
6 d3djba1 a.211.1.1 (A:2-214) Un 4.2 1.8E+02 0.013 20.5 1.9 16 127-142 181-196 (213)
7 d2pjqa1 a.211.1.1 (A:1-215) Un 4.0 2.1E+02 0.015 20.1 2.0 16 127-142 183-198 (215)
8 d3dtoa1 a.211.1.1 (A:2-213) Un 3.7 2.3E+02 0.017 19.6 2.0 16 127-142 181-196 (212)
9 d2ds5a1 g.39.1.11 (A:11-48) Cl 3.3 1.1E+02 0.0083 17.3 -0.0 6 57-62 2-7 (38)
10 d3b57a1 a.211.1.1 (A:1-201) Un 2.4 2.6E+02 0.019 19.0 1.0 16 127-142 170-185 (201)
No 1
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
Probab=10.67 E-value=54 Score=22.65 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=19.5
Q ss_pred hhhhhhhhccChhhHHHHHHHHH
Q 031306 121 RTHGFRRRMRTTSGRAILKRRRA 143 (161)
Q Consensus 121 R~HGFraRM~T~~GRkVL~RRR~ 143 (161)
=-++++.+-.|+-|++.|+++-.
T Consensus 21 SL~~~ln~c~T~~GkRlLr~wLl 43 (297)
T d1wb9a1 21 TLASVLDCTVTPMGSRMLKRWLH 43 (297)
T ss_dssp SHHHHHCCCSSHHHHHHHHHHHH
T ss_pred cHHHHHcCCCCcHHHHHHHHHHh
Confidence 45799999999999999997643
No 2
>d1hd6a_ a.10.1.1 (A:) ER-22 {Euplotes raikovi [TaxId: 5938]}
Probab=7.85 E-value=37 Score=19.82 Aligned_cols=12 Identities=50% Similarity=1.198 Sum_probs=9.8
Q ss_pred ccccccCCCCCc
Q 031306 4 LSITTSIPPPWL 15 (161)
Q Consensus 4 ~~~~~~~~~~w~ 15 (161)
|++.++-+|||.
T Consensus 26 l~v~gsc~pp~s 37 (37)
T d1hd6a_ 26 LAVKGSCPPPWS 37 (37)
T ss_dssp HHHHHHSCSSCC
T ss_pred eeeeccCCCCCC
Confidence 678889999993
No 3
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=5.54 E-value=1.2e+02 Score=18.75 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=8.2
Q ss_pred HHHHHHHHcC
Q 031306 136 AILKRRRAKG 145 (161)
Q Consensus 136 kVL~RRR~KG 145 (161)
+||+.|++||
T Consensus 87 ~vi~~r~~kG 96 (96)
T d2dy1a5 87 RIVQERAQEG 96 (96)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhcCC
Confidence 5888888887
No 4
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=4.94 E-value=1.7e+02 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=14.3
Q ss_pred hhccChhhHHHHHHHHH
Q 031306 127 RRMRTTSGRAILKRRRA 143 (161)
Q Consensus 127 aRM~T~~GRkVL~RRR~ 143 (161)
.+|.|+.||++-..|.+
T Consensus 183 ~~m~T~~gk~~A~~R~~ 199 (216)
T d2qgsa1 183 DLMHTPTAKKLAEERHQ 199 (216)
T ss_dssp GGCCSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH
Confidence 47999999999888853
No 5
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
Probab=4.54 E-value=1.8e+02 Score=20.35 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.3
Q ss_pred hccChhhHHHHHHHH
Q 031306 128 RMRTTSGRAILKRRR 142 (161)
Q Consensus 128 RM~T~~GRkVL~RRR 142 (161)
+|.|+.||++=+.|.
T Consensus 188 ~m~T~~gk~lA~~R~ 202 (217)
T d2pq7a1 188 TFWTETARKMAEDRY 202 (217)
T ss_dssp TCSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHH
Confidence 799999999766654
No 6
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}
Probab=4.23 E-value=1.8e+02 Score=20.55 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.4
Q ss_pred hhccChhhHHHHHHHH
Q 031306 127 RRMRTTSGRAILKRRR 142 (161)
Q Consensus 127 aRM~T~~GRkVL~RRR 142 (161)
.+|.|+.||++-..|.
T Consensus 181 ~~m~T~~gr~~A~~R~ 196 (213)
T d3djba1 181 DLMNTNAAKQEAEVRH 196 (213)
T ss_dssp TSCCSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4799999999877775
No 7
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=3.95 E-value=2.1e+02 Score=20.06 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.7
Q ss_pred hhccChhhHHHHHHHH
Q 031306 127 RRMRTTSGRAILKRRR 142 (161)
Q Consensus 127 aRM~T~~GRkVL~RRR 142 (161)
.+|.|+.||++=.+|.
T Consensus 183 ~~m~T~~gk~lA~~R~ 198 (215)
T d2pjqa1 183 ALMNTDTAKALAAHRT 198 (215)
T ss_dssp HHCCSHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6899999999877775
No 8
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}
Probab=3.71 E-value=2.3e+02 Score=19.60 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.8
Q ss_pred hhccChhhHHHHHHHH
Q 031306 127 RRMRTTSGRAILKRRR 142 (161)
Q Consensus 127 aRM~T~~GRkVL~RRR 142 (161)
.+|.|+.||++=..|.
T Consensus 181 ~~~~T~~gr~~a~~R~ 196 (212)
T d3dtoa1 181 DLMNTETGKQLAKERH 196 (212)
T ss_dssp TTCCSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5799999999866664
No 9
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=1.1e+02 Score=17.30 Aligned_cols=6 Identities=67% Similarity=1.248 Sum_probs=3.1
Q ss_pred eeeeec
Q 031306 57 LHCSFV 62 (161)
Q Consensus 57 L~~sF~ 62 (161)
|+|||-
T Consensus 2 l~CSFC 7 (38)
T d2ds5a1 2 LYCSFC 7 (38)
T ss_dssp CBCTTT
T ss_pred cEeeCC
Confidence 455554
No 10
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}
Probab=2.44 E-value=2.6e+02 Score=19.00 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=12.3
Q ss_pred hhccChhhHHHHHHHH
Q 031306 127 RRMRTTSGRAILKRRR 142 (161)
Q Consensus 127 aRM~T~~GRkVL~RRR 142 (161)
.+|.|+.||++-..|.
T Consensus 170 ~~~~T~~gk~la~~r~ 185 (201)
T d3b57a1 170 DQLNTETAKTIAKEKQ 185 (201)
T ss_dssp HHCCCHHHHHTTHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5699999998765553
Done!