BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031307
MVMVMVSGLLANCPGLIHSSQRTKLPIEAGRCNRIRFIDYSAIQPVERILGGFRYPLANH
LGNNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPG
FQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRRTP

High Scoring Gene Products

Symbol, full name Information P value
AT4G38490 protein from Arabidopsis thaliana 1.3e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031307
        (161 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2121179 - symbol:AT4G38490 species:3702 "Arabi...   177  1.3e-13   1


>TAIR|locus:2121179 [details] [associations]
            symbol:AT4G38490 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] EMBL:CP002687
            GenomeReviews:CT486007_GR UniGene:At.48960 EMBL:AY054627
            EMBL:AY072477 IPI:IPI00523382 RefSeq:NP_568043.1 UniGene:At.26455
            STRING:Q940H5 EnsemblPlants:AT4G38490.1 GeneID:830005
            KEGG:ath:AT4G38490 TAIR:At4g38490 eggNOG:NOG309221
            HOGENOM:HOG000090554 InParanoid:Q940H5 OMA:INGRVSH PhylomeDB:Q940H5
            ProtClustDB:CLSN2689821 Genevestigator:Q940H5 Uniprot:Q940H5
        Length = 153

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/101 (35%), Positives = 51/101 (50%)

Query:    62 GNNCVNSVGRDYNQLTYNDDIPEE-PFWLSLVKDIIWALKSLFLFLVGQPSQLKHIEWPG 120
             G+  V SVG      + +  +PEE P WLSL++D++W+ +SL  F+  QPSQLK+IEWP 
Sbjct:    53 GSGTVGSVGSARESWSSHKKLPEEEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPT 112

Query:   121 FQXXXXXXXXXXXXXXXXXXXXXXXXXXXSFILALLLRRTP 161
             F                             +ILAL+LR+ P
Sbjct:   113 FASTLKTATLSLCLVAVFIVALSSVDAALCYILALILRKAP 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.143   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       134   0.00091  102 3  11 22  0.36    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.31u 0.23s 11.54t   Elapsed:  00:00:01
  Total cpu time:  11.31u 0.23s 11.54t   Elapsed:  00:00:01
  Start:  Fri May 10 21:10:38 2013   End:  Fri May 10 21:10:39 2013

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