Query 031307
Match_columns 161
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 12:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00584 SecE: SecE/Sec61-gamm 99.6 1.7E-15 3.6E-20 100.3 3.0 56 102-157 2-57 (57)
2 PRK05740 secE preprotein trans 99.5 1.4E-14 3E-19 106.0 4.3 59 100-158 34-92 (92)
3 PRK07597 secE preprotein trans 99.5 3.2E-14 6.8E-19 96.8 4.1 57 100-156 8-64 (64)
4 TIGR00964 secE_bact preprotein 99.5 3.2E-14 7E-19 94.9 2.9 54 103-156 2-55 (55)
5 COG0690 SecE Preprotein transl 99.4 1.3E-13 2.7E-18 97.5 3.3 55 100-154 18-72 (73)
6 PRK09400 secE preprotein trans 31.7 73 0.0016 22.2 3.3 46 100-145 8-53 (61)
7 PF04647 AgrB: Accessory gene 31.2 1.1E+02 0.0025 23.5 4.7 37 123-159 29-66 (185)
8 PRK09039 hypothetical protein; 31.2 33 0.00072 30.2 1.9 18 118-135 16-33 (343)
9 PF04024 PspC: PspC domain; I 25.3 1.2E+02 0.0026 20.7 3.5 15 142-157 41-55 (61)
10 PF14257 DUF4349: Domain of un 24.6 3.1E+02 0.0067 22.6 6.4 25 83-107 210-234 (262)
11 PRK01100 putative accessory ge 24.3 1.5E+02 0.0032 24.4 4.5 38 123-160 41-79 (210)
12 TIGR03059 psaOeuk photosystem 23.5 42 0.00091 25.3 1.0 9 84-92 49-57 (82)
13 PF12114 Period_C: Period prot 23.2 39 0.00084 28.5 0.9 27 90-116 120-150 (195)
14 TIGR00540 hemY_coli hemY prote 22.9 1.3E+02 0.0027 26.1 4.0 35 103-140 18-52 (409)
15 PF07219 HemY_N: HemY protein 22.8 1.5E+02 0.0033 21.5 3.8 15 116-132 5-19 (108)
16 COG4062 MtrB Tetrahydromethano 20.9 1.3E+02 0.0029 23.7 3.4 14 116-129 62-75 (108)
17 TIGR00327 secE_euk_arch protei 20.7 1.3E+02 0.0029 21.1 3.0 40 100-139 4-43 (61)
18 PF05313 Pox_P21: Poxvirus P21 20.6 2.3E+02 0.005 24.3 4.9 31 115-146 107-137 (189)
No 1
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=99.56 E-value=1.7e-15 Score=100.27 Aligned_cols=56 Identities=29% Similarity=0.497 Sum_probs=53.7
Q ss_pred HHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031307 102 LFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 157 (161)
Q Consensus 102 l~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L 157 (161)
+.+|+.|++.|+|||+||+++|++++|.+|++++++++++++.+|.++++++++++
T Consensus 2 ~~~f~~~~~~Elkkv~WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~i~ 57 (57)
T PF00584_consen 2 IKNFFREVKKELKKVTWPSRKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNLIL 57 (57)
T ss_dssp CHHHHHCHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 36899999999999999999999999999999999999999999999999999875
No 2
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=99.51 E-value=1.4e-14 Score=105.98 Aligned_cols=59 Identities=24% Similarity=0.532 Sum_probs=55.9
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR 158 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~Lr 158 (161)
+.+..|+.|.+.|+|||+||+++|++++|++|++++++++++++.+|.+++++++++++
T Consensus 34 ~~~~~F~k~v~~ElkKV~WPtr~e~~~~t~~Viv~~~i~~l~i~~~D~~~~~li~~i~~ 92 (92)
T PRK05740 34 KAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLISFITG 92 (92)
T ss_pred HHHHHHHHHHHHHhhhccCcCHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999999999999999999999999999999999998763
No 3
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=99.48 E-value=3.2e-14 Score=96.83 Aligned_cols=57 Identities=28% Similarity=0.485 Sum_probs=54.1
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 156 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~ 156 (161)
+.+.+|+.|.+.|+|||+||+++|+++++++|++++++++++++.+|.++.++++++
T Consensus 8 ~~~~~f~~~~~~ElkkV~WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~~l 64 (64)
T PRK07597 8 KKLKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLISLL 64 (64)
T ss_pred HHHHHHHHHHHHHHhhCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568899999999999999999999999999999999999999999999999998753
No 4
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=99.46 E-value=3.2e-14 Score=94.86 Aligned_cols=54 Identities=22% Similarity=0.472 Sum_probs=51.5
Q ss_pred HHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307 103 FLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 156 (161)
Q Consensus 103 ~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~ 156 (161)
.+|+.|.+.|+|||+||+++|+.+++++|++++++++++++.+|.+++++++++
T Consensus 2 ~~f~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~~i 55 (55)
T TIGR00964 2 FKFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKLISLI 55 (55)
T ss_pred hhHHHHHHHHHhcCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999999999999999999999998753
No 5
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=99.41 E-value=1.3e-13 Score=97.49 Aligned_cols=55 Identities=24% Similarity=0.495 Sum_probs=52.4
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILA 154 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla 154 (161)
+...+|+.|...|+|||+||+++|+++++++|+++++++++++..+|..++++++
T Consensus 18 k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i~ 72 (73)
T COG0690 18 KKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLVS 72 (73)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999999999999999999875
No 6
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=31.74 E-value=73 Score=22.20 Aligned_cols=46 Identities=20% Similarity=0.061 Sum_probs=34.0
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhh
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSV 145 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~V 145 (161)
..+.+|+.|..+=+|.-+=|+++|=.+.+-++.+-.+++-+.=..+
T Consensus 8 e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 8 ENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888999999988888877665554433333
No 7
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=31.17 E-value=1.1e+02 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=31.8
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hc
Q 031307 123 STLKTATLTLVLVALLIVALSSVDSALSFILALLL-RR 159 (161)
Q Consensus 123 eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L-r~ 159 (161)
|.+-+++..++.+.+++.+++.+..++.+++++.+ |+
T Consensus 29 e~il~~li~~~~~l~i~~~~g~~~~~li~l~~f~~lR~ 66 (185)
T PF04647_consen 29 ELILSNLIKIIIILLIGLLLGMFPETLIFLLSFIPLRS 66 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45667788889999999999999999999998887 54
No 8
>PRK09039 hypothetical protein; Validated
Probab=31.15 E-value=33 Score=30.22 Aligned_cols=18 Identities=39% Similarity=0.949 Sum_probs=14.3
Q ss_pred cCCccchhhhhHHHHHHH
Q 031307 118 WPGFQSTLKTATLTLVLV 135 (161)
Q Consensus 118 WPs~~eTlkTt~lvLVlV 135 (161)
||+|=+.+.|-++|++||
T Consensus 16 wpg~vd~~~~ll~~~~f~ 33 (343)
T PRK09039 16 WPGFVDALSTLLLVIMFL 33 (343)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 999999887777666655
No 9
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=25.27 E-value=1.2e+02 Score=20.75 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHHHh
Q 031307 142 LSSVDSALSFILALLL 157 (161)
Q Consensus 142 Ls~VDsaLs~lla~~L 157 (161)
++.. .++.|++.|++
T Consensus 41 ~~~~-~~l~Y~~~w~~ 55 (61)
T PF04024_consen 41 FTGG-GILLYLILWLL 55 (61)
T ss_pred HHhH-HHHHHHHHHHH
Confidence 4444 89999999987
No 10
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.61 E-value=3.1e+02 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=18.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHh
Q 031307 83 PEEPFWLSLVKDIIWALKSLFLFLV 107 (161)
Q Consensus 83 ~~ePf~l~~~k~~~~~~ksl~~Fl~ 107 (161)
++.+||-.+...+-.++..+..|+.
T Consensus 210 ~~~~~~~~~~~al~~~~~~~~~~~~ 234 (262)
T PF14257_consen 210 ESPSFGSRFRDALKNGWNALVSFLS 234 (262)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4567887777777777777776653
No 11
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=24.32 E-value=1.5e+02 Score=24.36 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.6
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hcC
Q 031307 123 STLKTATLTLVLVALLIVALSSVDSALSFILALLL-RRT 160 (161)
Q Consensus 123 eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L-r~~ 160 (161)
|++-..+.-++++.+++..++....++..++++++ |+.
T Consensus 41 ~~il~~i~k~i~il~i~~i~g~~~~tli~~l~f~~lR~~ 79 (210)
T PRK01100 41 EIILINVSKFAIVYLIALVTGLLLQTVTVHLSFLWLRRY 79 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhc
Confidence 34556667788888899999999999999998877 653
No 12
>TIGR03059 psaOeuk photosystem I protein PsaO. Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria.
Probab=23.49 E-value=42 Score=25.32 Aligned_cols=9 Identities=56% Similarity=1.486 Sum_probs=7.6
Q ss_pred CCchhHHHH
Q 031307 84 EEPFWLSLV 92 (161)
Q Consensus 84 ~ePf~l~~~ 92 (161)
++||||+++
T Consensus 49 ~~~fWL~li 57 (82)
T TIGR03059 49 DDPFWLLLF 57 (82)
T ss_pred CCchHHHHH
Confidence 379999997
No 13
>PF12114 Period_C: Period protein 2/3C-terminal region; InterPro: IPR022728 This domain is found in eukaryotes and is typically between 164 to 200 amino acids in length. Sequences represented by this entry are found C-terminal to PF08447 from PFAM.
Probab=23.22 E-value=39 Score=28.45 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH----HHHhhCCccccce
Q 031307 90 SLVKDIIWALKSLF----LFLVGQPSQLKHI 116 (161)
Q Consensus 90 ~~~k~~~~~~ksl~----~Fl~Eq~~ELKkV 116 (161)
.|+|+=.=.|+.+. .|-.|||+||.+|
T Consensus 120 ~VLkeD~ekLk~mq~~QP~fs~~Qk~EL~qv 150 (195)
T PF12114_consen 120 EVLKEDREKLKSMQKQQPRFSNEQKEELAQV 150 (195)
T ss_pred HHHHHHHHHHHHHHhhCCcchHHHHHHHHHh
Confidence 45666667788877 6889999999876
No 14
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=22.93 E-value=1.3e+02 Score=26.11 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=20.5
Q ss_pred HHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHH
Q 031307 103 FLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIV 140 (161)
Q Consensus 103 ~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~liv 140 (161)
.-++...|+.. -|.|++. ||-|++.+.++++++.+
T Consensus 18 ~~~~~~~~Gyv-~i~~~~~--~ie~s~~~~~~~~~~~~ 52 (409)
T TIGR00540 18 GPMIAGHQGYV-LIETANR--IIEMSITGLAIFFIIAL 52 (409)
T ss_pred HHHHcCCCCeE-EEEECCE--EEEeeHHHHHHHHHHHH
Confidence 44678888865 4777764 35565555544444333
No 15
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.81 E-value=1.5e+02 Score=21.53 Aligned_cols=15 Identities=27% Similarity=0.727 Sum_probs=6.9
Q ss_pred eecCCccchhhhhHHHH
Q 031307 116 IEWPGFQSTLKTATLTL 132 (161)
Q Consensus 116 VeWPs~~eTlkTt~lvL 132 (161)
|+|+.. ++-|+..+.
T Consensus 5 I~~~~~--~ie~sl~~~ 19 (108)
T PF07219_consen 5 ISWGGY--RIETSLWVA 19 (108)
T ss_pred EEECCE--EEEeeHHHH
Confidence 456544 344444433
No 16
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=20.87 E-value=1.3e+02 Score=23.68 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=11.2
Q ss_pred eecCCccchhhhhH
Q 031307 116 IEWPGFQSTLKTAT 129 (161)
Q Consensus 116 VeWPs~~eTlkTt~ 129 (161)
=+||+|+.|-.||-
T Consensus 62 nS~PgRegv~~~aG 75 (108)
T COG4062 62 NSFPGREGVYATAG 75 (108)
T ss_pred ccCCCccchHHHHH
Confidence 37999999987763
No 17
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=20.74 E-value=1.3e+02 Score=21.08 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHH
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLI 139 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~li 139 (161)
..+.+|+.|..+=+|.-+=|+++|=.+.+-+|.+-.+++-
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G 43 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVG 43 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999888887766544443
No 18
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=20.65 E-value=2.3e+02 Score=24.27 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=24.3
Q ss_pred ceecCCccchhhhhHHHHHHHHHHHHHHhhhH
Q 031307 115 HIEWPGFQSTLKTATLTLVLVALLIVALSSVD 146 (161)
Q Consensus 115 kVeWPs~~eTlkTt~lvLVlV~~livaLs~VD 146 (161)
++-||+-..++..+++.+++++ +.+++.++-
T Consensus 107 qi~~~~~~~~~gMsIvcv~~Si-~ti~~~~~s 137 (189)
T PF05313_consen 107 QIYNPGANNNVGMSIVCVIMSI-ITIIVNSVS 137 (189)
T ss_pred eeecCCCcceehhHHHHHHHHH-HHHHHHhhh
Confidence 4679999999999999888877 455565555
Done!