Query 031307
Match_columns 161
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 19:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_C SECE; RECA-type ATPase 99.6 2.5E-16 8.4E-21 107.6 4.8 59 100-158 2-60 (65)
2 2zjs_E Preprotein translocase 99.6 1.1E-16 3.9E-21 107.5 1.8 58 99-156 2-59 (60)
3 3din_D Preprotein translocase 99.6 2E-16 6.9E-21 108.1 1.6 58 100-157 2-59 (65)
4 3j01_B Preprotein translocase 99.4 9.2E-15 3.1E-19 110.2 -1.3 57 101-157 56-112 (116)
5 3bo0_B Preprotein translocase 99.0 1.1E-10 3.8E-15 78.3 2.5 54 100-153 4-64 (65)
6 3mp7_B Preprotein translocase 31.4 29 0.001 23.2 2.3 41 101-141 7-47 (61)
7 1rh5_B Preprotein translocase 29.5 36 0.0012 23.7 2.6 56 101-156 11-66 (74)
8 1m56_D Cytochrome C oxidase; m 28.7 29 0.001 22.6 1.9 17 126-142 34-50 (51)
9 1qle_D Cytochrome AA3, ccytoch 24.5 31 0.0011 21.8 1.4 17 126-142 26-42 (43)
10 3d31_C Sulfate/molybdate ABC t 15.6 1.2E+02 0.004 23.5 3.2 22 118-139 81-102 (295)
No 1
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=99.62 E-value=2.5e-16 Score=107.65 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=31.8
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR 158 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~Lr 158 (161)
+.+.+|+.|++.|+|||+|||++|+.++|++|+++++++++++..+|.++++++.+++.
T Consensus 2 ~k~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~ 60 (65)
T 3dl8_C 2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILS 60 (65)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999873
No 2
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=99.61 E-value=1.1e-16 Score=107.46 Aligned_cols=58 Identities=19% Similarity=0.466 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307 99 LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 156 (161)
Q Consensus 99 ~ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~ 156 (161)
++.+.+|+.|.+.|+|||+|||++|+.++|++|++++++++++++.+|.+++++++++
T Consensus 2 ~~~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i 59 (60)
T 2zjs_E 2 FARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp ----------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred chHHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999999999999998887653
No 3
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=99.59 E-value=2e-16 Score=108.06 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=49.4
Q ss_pred HHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 157 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L 157 (161)
+.+.+|+.|.+.|+|||+|||++|+.++|++|+++++++++++..+|.++++++.+++
T Consensus 2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~ 59 (65)
T 3din_D 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIF 59 (65)
T ss_dssp --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999987
No 4
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=99.41 E-value=9.2e-15 Score=110.23 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=55.0
Q ss_pred HHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031307 101 SLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 157 (161)
Q Consensus 101 sl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~L 157 (161)
.+.+|+.|.+.|+|||+|||++||.++|++|+++++++++++..+|.++++++.+++
T Consensus 56 ~~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~~~~v~~i~ 112 (116)
T 3j01_B 56 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT 112 (116)
T ss_dssp CTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999987
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=99.00 E-value=1.1e-10 Score=78.31 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCccccceecCCc----cchh---hhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGF----QSTL---KTATLTLVLVALLIVALSSVDSALSFIL 153 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~----~eTl---kTt~lvLVlV~~livaLs~VDsaLs~ll 153 (161)
+.+.+|+.|...|+|||.||++ +|+. ++|+++++++.+++.++..+|..+..++
T Consensus 4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~~l 64 (65)
T 3bo0_B 4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHC
T ss_pred chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999 9999 9999999999999999999999888764
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=31.40 E-value=29 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHH
Q 031307 101 SLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVA 141 (161)
Q Consensus 101 sl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~liva 141 (161)
.+.+|++|..+=+|+-+=|+++|=.+.+-++.+-.+++-+.
T Consensus 7 ~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 7 RIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp -CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888999999999999888887766665443
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=29.50 E-value=36 Score=23.69 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031307 101 SLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 156 (161)
Q Consensus 101 sl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~lla~~ 156 (161)
.+.+|+.|..+=+|.-+=|+++|=.+.+-++.+-.+++-+.=+.+-.+...+-+.+
T Consensus 11 ~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii 66 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 66 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34567777777788889999999999998888777776655555555555555444
No 8
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=28.66 E-value=29 Score=22.65 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 031307 126 KTATLTLVLVALLIVAL 142 (161)
Q Consensus 126 kTt~lvLVlV~~livaL 142 (161)
.+++++++++.+|++|+
T Consensus 34 ~gt~~~~~~ll~laif~ 50 (51)
T 1m56_D 34 WAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 35666667777777765
No 9
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=24.53 E-value=31 Score=21.82 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHH
Q 031307 126 KTATLTLVLVALLIVAL 142 (161)
Q Consensus 126 kTt~lvLVlV~~livaL 142 (161)
..++++++++.+|++|+
T Consensus 26 ~gt~~~~~~ll~maif~ 42 (43)
T 1qle_D 26 WVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34556666666666654
No 10
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=15.65 E-value=1.2e+02 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=9.9
Q ss_pred cCCccchhhhhHHHHHHHHHHH
Q 031307 118 WPGFQSTLKTATLTLVLVALLI 139 (161)
Q Consensus 118 WPs~~eTlkTt~lvLVlV~~li 139 (161)
|...-+|+.-++++.++..++.
T Consensus 81 ~~~l~nTl~~~~~~~~l~~~lg 102 (295)
T 3d31_C 81 ISSIFLSLYAGFLATLLALLLG 102 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554444444443333
Done!