Query 031307
Match_columns 161
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 19:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 32.8 25 0.0018 22.1 3.8 36 103-138 2-37 (56)
2 d1m56d_ f.23.8.1 (D:) Bacteria 15.6 50 0.0037 19.7 2.5 14 127-140 26-39 (42)
3 d1e5ea_ c.67.1.3 (A:) Methioni 14.8 41 0.003 26.7 2.4 26 99-125 268-293 (394)
4 d3bexa2 c.55.1.13 (A:119-245) 14.3 1.7E+02 0.012 19.3 5.5 54 99-152 31-84 (127)
5 d1qled_ f.23.8.1 (D:) Bacteria 13.8 46 0.0034 19.9 1.9 14 127-140 27-40 (43)
6 d2r6gf2 f.58.1.1 (F:261-504) M 10.3 83 0.006 22.0 2.7 20 118-137 14-33 (244)
7 d1qgna_ c.67.1.3 (A:) Cystathi 9.7 1.2E+02 0.0089 24.0 3.8 28 95-123 270-297 (398)
8 d1n8pa_ c.67.1.3 (A:) Cystathi 9.0 1.3E+02 0.0095 23.6 3.7 25 100-124 265-289 (393)
9 d1unld_ a.74.1.1 (D:) CDK5 act 8.4 22 0.0016 26.3 -1.2 39 73-115 94-147 (150)
10 d1qk7a_ g.3.6.2 (A:) Lectin SH 8.4 49 0.0036 18.7 0.6 10 12-21 13-22 (32)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=32.76 E-value=25 Score=22.06 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHhhCCccccceecCCccchhhhhHHHHHHHHHH
Q 031307 103 FLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALL 138 (161)
Q Consensus 103 ~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~l 138 (161)
.+|+.|..+=+|.-+=|+++|=.+++.++-+=.+++
T Consensus 2 k~F~~es~Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~ 37 (56)
T d1rh5b_ 2 KEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLL 37 (56)
T ss_dssp CHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999888776544443
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.63 E-value=50 Score=19.72 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHH
Q 031307 127 TATLTLVLVALLIV 140 (161)
Q Consensus 127 Tt~lvLVlV~~liv 140 (161)
++++.+++.+++++
T Consensus 26 ~~i~~i~~liflAi 39 (42)
T d1m56d_ 26 AAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 3
>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}
Probab=14.80 E-value=41 Score=26.72 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCCccccceecCCccchh
Q 031307 99 LKSLFLFLVGQPSQLKHIEWPGFQSTL 125 (161)
Q Consensus 99 ~ksl~~Fl~Eq~~ELKkVeWPs~~eTl 125 (161)
-..+.+||+++| +.++|.||+..+.-
T Consensus 268 A~~lA~~L~~hp-~V~~V~yPgl~s~p 293 (394)
T d1e5ea_ 268 AMKVAEYLKSHP-AVEKVYYPGFEDHE 293 (394)
T ss_dssp HHHHHHHHHTCT-TEEEEECTTCSSST
T ss_pred HHHHHHHHhhcC-CccEEeCCCccccc
Confidence 346789999998 68999999987754
No 4
>d3bexa2 c.55.1.13 (A:119-245) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}
Probab=14.26 E-value=1.7e+02 Score=19.30 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHHHhhCCccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 031307 99 LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFI 152 (161)
Q Consensus 99 ~ksl~~Fl~Eq~~ELKkVeWPs~~eTlkTt~lvLVlV~~livaLs~VDsaLs~l 152 (161)
++-..+=|.+.-.+|++++....++.+.+.+.-=+-.-+..-+.+.++..+-.+
T Consensus 31 ~~l~~~aL~~~Ta~Lp~~~~~~~~~~~g~~T~~ai~~G~~~g~~~~i~~~i~~~ 84 (127)
T d3bexa2 31 FFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRI 84 (127)
T ss_dssp HHHHHHHHHHTCSSCCCCCCCCCCSSSBSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhccccccccccccCCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444556667777888888888877788777776666666666667777766554
No 5
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=13.83 E-value=46 Score=19.95 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHH
Q 031307 127 TATLTLVLVALLIV 140 (161)
Q Consensus 127 Tt~lvLVlV~~liv 140 (161)
++++.+++.+++++
T Consensus 27 ~~i~~i~~liflAi 40 (43)
T d1qled_ 27 VSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 6
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.32 E-value=83 Score=21.99 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=8.1
Q ss_pred cCCccchhhhhHHHHHHHHH
Q 031307 118 WPGFQSTLKTATLTLVLVAL 137 (161)
Q Consensus 118 WPs~~eTlkTt~lvLVlV~~ 137 (161)
|+++-++++.|++..+.+++
T Consensus 14 ~~~~~~~l~~t~~~~~~~~~ 33 (244)
T d2r6gf2 14 QKPFLAIFVWTVVFSLITVF 33 (244)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333
No 7
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=9.66 E-value=1.2e+02 Score=23.95 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhCCccccceecCCccc
Q 031307 95 IIWALKSLFLFLVGQPSQLKHIEWPGFQS 123 (161)
Q Consensus 95 ~~~~~ksl~~Fl~Eq~~ELKkVeWPs~~e 123 (161)
..-.-..+.+||+++| +.++|.||+..+
T Consensus 270 ~~~nA~~lA~~L~~hp-~V~~V~yPgL~s 297 (398)
T d1qgna_ 270 QNSTALRMAEILEAHP-KVRHVYYPGLQS 297 (398)
T ss_dssp HHHHHHHHHHHHHTCT-TEEEEECTTSSS
T ss_pred HHHHHHHHHHHHHhCC-CeeecCCCCCCC
Confidence 3334456889999987 599999999875
No 8
>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.04 E-value=1.3e+02 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.503 Sum_probs=21.1
Q ss_pred HHHHHHHhhCCccccceecCCccch
Q 031307 100 KSLFLFLVGQPSQLKHIEWPGFQST 124 (161)
Q Consensus 100 ksl~~Fl~Eq~~ELKkVeWPs~~eT 124 (161)
..+.+||.+++...++|.||+..+-
T Consensus 265 ~~lA~~L~~~~~~V~~V~yP~l~~~ 289 (393)
T d1n8pa_ 265 NKIAEFLAADKENVVAVNYPGLKTH 289 (393)
T ss_dssp HHHHHHHTSCTTTEEEEECTTSTTS
T ss_pred HHHHHHHHhccCcEEEEeccccccc
Confidence 4688999988888999999997653
No 9
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.41 E-value=22 Score=26.27 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=27.6
Q ss_pred CccceecCCCCCCchhHHHHHHHHHHH---------------HHHHHHHhhCCccccc
Q 031307 73 YNQLTYNDDIPEEPFWLSLVKDIIWAL---------------KSLFLFLVGQPSQLKH 115 (161)
Q Consensus 73 ~~~l~~~dd~~~ePf~l~~~k~~~~~~---------------ksl~~Fl~Eq~~ELKk 115 (161)
+++.|| |=+||+.---||.+|.= .+=-.||.|+..|||.
T Consensus 94 GnEISY----PLKPFLve~~k~~FWdRCl~Iin~~S~kML~iN~dp~fFtevf~dLK~ 147 (150)
T d1unld_ 94 GNEISY----PLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKN 147 (150)
T ss_dssp CSSSCC----CSGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred Cccccc----CCcceeecccHHHHHHHHHHHHHHHhHHHhhhcCCcchHHHHHHHHHh
Confidence 355565 56899988889999961 1223588888888875
No 10
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=8.40 E-value=49 Score=18.68 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=8.2
Q ss_pred CCcccccccC
Q 031307 12 NCPGLIHSSQ 21 (161)
Q Consensus 12 ~~sg~v~~~~ 21 (161)
-|||.||+++
T Consensus 13 ccsgyvcs~t 22 (32)
T d1qk7a_ 13 CCSGYVCSRT 22 (32)
T ss_dssp CCTTEEECSS
T ss_pred cccceEecCc
Confidence 4899999776
Done!