RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031308
(161 letters)
>gnl|CDD|235522 PRK05591, rplQ, 50S ribosomal protein L17; Validated.
Length = 113
Score = 161 bits (409), Expect = 5e-52
Identities = 57/110 (51%), Positives = 77/110 (70%)
Query: 1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L A
Sbjct: 1 RKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHAR 60
Query: 61 RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
R+A A +R + +HKLF E+A RY DR GGYTR+L+ R GD APMA I
Sbjct: 61 RQAFARLRDKEAVHKLFDEIAPRYADRNGGYTRILKLGFRRGDNAPMAII 110
>gnl|CDD|223281 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal
structure and biogenesis].
Length = 116
Score = 143 bits (362), Expect = 6e-45
Identities = 55/109 (50%), Positives = 74/109 (67%)
Query: 2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L R
Sbjct: 5 KKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRR 64
Query: 62 RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
A A +R D + KLF E+A RY +R GGYTR+L+ R GD APMA I
Sbjct: 65 LAFARLRDKDAVKKLFDEIAPRYAERNGGYTRILKLGFRRGDNAPMAII 113
>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17.
Length = 97
Score = 139 bits (354), Expect = 6e-44
Identities = 49/94 (52%), Positives = 69/94 (73%)
Query: 17 MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKL 76
+LR + + L++HERIETT+AKAKE+R A+ ++ L K+G L A R+A +F+R +++ KL
Sbjct: 1 LLRNLATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALSFLRDKELVKKL 60
Query: 77 FTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
F ELA RY DR GGYTR+++ R GD APMA I
Sbjct: 61 FDELAPRYADRNGGYTRIIKLGPRRGDNAPMAII 94
>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17. Eubacterial and
mitochondrial. The mitochondrial form, from yeast,
contains an additional 110 amino acids C-terminal to the
region found by this model [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 112
Score = 121 bits (305), Expect = 2e-36
Identities = 53/112 (47%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 4 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
+RKL R + HR ++LR + S L++HE+I+TT+AKAKE+RR+ + ++ L K + R A
Sbjct: 2 YRKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREA 61
Query: 64 AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVD 115
A++R +++HKLF+E+A RY R GGYTR+L+ R GDAA MA I+ VD
Sbjct: 62 KAYIRNKEIVHKLFSEIAPRYAQRPGGYTRILKLGPRRGDAAEMAIIE-LVD 112
>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional.
Length = 253
Score = 81.0 bits (200), Expect = 3e-19
Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 4 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
FR+ + HR ++ + +L+++ R+E T+ +AKE+++ A+ ++ L K+ + + +
Sbjct: 19 FRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKV 78
Query: 64 AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIDRFVDRENELRQ 122
+ +R KL+ + Y+DR +TR++ R+R+ DAAPMAYI+ FVDR E+R
Sbjct: 79 ESMLRTPQGRRKLYEKYVPLYRDRPFFFTRVVNQWRLRLRDAAPMAYIE-FVDRPGEIRP 137
Query: 123 SKP 125
+KP
Sbjct: 138 AKP 140
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 30.6 bits (69), Expect = 0.34
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 32/148 (21%)
Query: 22 VSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 81
+S++++ RIE TV AK + A+ + GK G++ A A RG D+ KL E
Sbjct: 584 LSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGAVTVATNMAG--RGTDI--KLDEEAV 639
Query: 82 ----------YRYKDRAGGYTRLLRSRI-RVGDAAPMAYIDRFVDRENELRQSKPAVPQP 130
R++ R R LR R R+GD + F DR L S
Sbjct: 640 AVGGLYVIGTSRHQSRR--IDRQLRGRCARLGDPGAAKFFLSFEDRLMRLFAS------- 690
Query: 131 PPRAALDPWTRSRLTKNFAPPKQEKSSD 158
P+ + L ++F PP+ E SD
Sbjct: 691 -PKL-------NTLIRHFRPPEGEAMSD 710
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 29.9 bits (67), Expect = 0.65
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 22 VSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
+S L+K E IE V AK + A+ + Q G+ G+L A A RG D++
Sbjct: 465 MSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPGALTIATNMAG--RGTDIL 514
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit. The
proteins SecA-F and SecY, not all of which are
necessary, comprise the standard prokaryotic protein
translocation apparatus. Other, specialized
translocation systems also exist but are not as broadly
distributed. This model describes SecA, an essential
member of the apparatus. This model excludes SecA2 of
the accessory secretory system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 745
Score = 29.2 bits (66), Expect = 1.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 21 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
++S L+K I V AK R A+ + Q G++G++ A A RG D+
Sbjct: 420 LLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAG--RGTDIK 470
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed.
Length = 908
Score = 27.6 bits (61), Expect = 4.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 21 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
++++L+ E+I V AK R A+ + Q G+ G++ A A RG D++
Sbjct: 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMAG--RGTDIV 514
>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup
3 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 283
Score = 26.8 bits (60), Expect = 6.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 33 TTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
TT+ +RR + +L + G + AA+
Sbjct: 178 TTMKSPALLRRQIALLPELAERGLVHAAK 206
>gnl|CDD|216655 pfam01708, Gemini_mov, Geminivirus putative movement protein. This
family consists of putative movement proteins from Maize
streak and wheat dwarf virus.
Length = 92
Score = 25.5 bits (56), Expect = 8.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 124 KPAVPQPPPRAALDPWTR 141
P VP P ++ PW+R
Sbjct: 19 TPRVPTAAPSSSDLPWSR 36
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 26.3 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 60 ARRAAAFVRGDDVIHKLFTELA----------YRYKDRAGG 90
RR+AA RG IH +F + A Y D AGG
Sbjct: 9 QRRSAAVPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGG 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.383
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,347,935
Number of extensions: 777590
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 29
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)