RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031308
         (161 letters)



>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score =  124 bits (312), Expect = 5e-38
 Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE 117
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+  VDR 
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDRS 119


>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 113

 Score =  121 bits (304), Expect = 7e-37
 Identities = 42/108 (38%), Positives = 63/108 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 4   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 63

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA I
Sbjct: 64  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALI 111


>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 105

 Score =  106 bits (267), Expect = 2e-31
 Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD 70
           + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R     ++  
Sbjct: 1   SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60

Query: 71  DVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIDRFVD 115
            ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A ++  V+
Sbjct: 61  KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE-LVE 105


>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score =  103 bits (259), Expect = 3e-30
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 9/116 (7%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIH 74
           +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I 
Sbjct: 1   LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60

Query: 75  KLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQP 130
           KLF  LA RYKD+ GGYTR+L+   R  D A MA I+ +           P +P P
Sbjct: 61  KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE-YKGNC------LPPLPLP 109


>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
           subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 356

 Score = 24.5 bits (52), Expect = 7.6
 Identities = 11/64 (17%), Positives = 18/64 (28%)

Query: 82  YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQPPPRAALDPWTR 141
           +R +       R   +    G    M      +  +       P    P   A L P   
Sbjct: 220 FRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKY 279

Query: 142 SRLT 145
           +R+T
Sbjct: 280 NRMT 283


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,393
Number of extensions: 25041
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 8
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)