Your job contains 1 sequence.
>031309
MEKRRHCCERKGEREERTLLYKLCFHRNSSYCQFNIVFLLVLIGGYASNGAPGQGPQSEG
DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL
NGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIEYNA
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031309
(161 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 406 7.0e-38 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 401 2.4e-37 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 400 3.0e-37 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 391 2.7e-36 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 367 9.5e-34 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 301 9.4e-27 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 298 1.9e-26 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 292 8.4e-26 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 288 2.2e-25 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 248 6.5e-21 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 241 9.4e-20 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 232 6.3e-19 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 230 9.7e-19 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 222 2.2e-17 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 223 3.0e-17 1
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 212 2.9e-16 1
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 210 2.9e-16 1
ZFIN|ZDB-GENE-040426-2298 - symbol:rbm22 "RNA binding mot... 176 9.2e-13 1
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 176 1.2e-12 1
TAIR|locus:2043157 - symbol:MAC5B "MOS4-associated comple... 172 3.3e-12 1
UNIPROTKB|E7EW00 - symbol:U2SURP "U2 snRNP-associated SUR... 165 1.5e-11 1
UNIPROTKB|H0Y8D9 - symbol:U2SURP "U2 snRNP-associated SUR... 165 1.6e-11 1
UNIPROTKB|F5GWK3 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 1.8e-11 1
UNIPROTKB|F1NMD7 - symbol:RBM22 "Pre-mRNA-splicing factor... 164 1.8e-11 1
UNIPROTKB|Q5ZM16 - symbol:RBM22 "Pre-mRNA-splicing factor... 164 1.8e-11 1
RGD|1305770 - symbol:Rbm22 "RNA binding motif protein 22"... 164 1.8e-11 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 164 2.1e-11 1
UNIPROTKB|Q7ZXB5 - symbol:rbm22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|F2Z4G3 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|Q9NW64 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|Q4R4J1 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
UNIPROTKB|Q5RAY5 - symbol:RBM22 "Pre-mRNA-splicing factor... 163 2.3e-11 1
MGI|MGI:1914060 - symbol:Rbm22 "RNA binding motif protein... 163 2.3e-11 1
UNIPROTKB|E2RG35 - symbol:RBM22 "Uncharacterized protein"... 163 2.4e-11 1
UNIPROTKB|Q3B7L8 - symbol:RBM22 "Pre-mRNA-splicing factor... 162 3.0e-11 1
UNIPROTKB|Q6P616 - symbol:rbm22 "Pre-mRNA-splicing factor... 161 3.8e-11 1
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 166 4.2e-11 1
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 165 5.5e-11 1
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 165 5.5e-11 1
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 165 5.8e-11 1
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 165 5.8e-11 1
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 165 5.8e-11 1
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 165 5.9e-11 1
WB|WBGene00011722 - symbol:T11G6.8 species:6239 "Caenorha... 158 7.7e-11 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 157 8.8e-11 1
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 163 9.5e-11 1
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 163 9.5e-11 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 153 9.9e-11 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 153 1.0e-10 1
UNIPROTKB|I3LRX5 - symbol:TIA1 "Uncharacterized protein" ... 148 1.5e-10 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 149 1.8e-10 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 153 1.8e-10 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 155 2.2e-10 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 153 2.2e-10 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 153 2.3e-10 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 153 2.7e-10 1
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 158 2.8e-10 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 151 4.0e-10 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 150 4.6e-10 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 150 4.7e-10 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 150 5.2e-10 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 150 5.3e-10 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 150 5.3e-10 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 149 6.2e-10 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 149 6.4e-10 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 149 6.5e-10 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 150 6.5e-10 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 149 6.7e-10 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 149 6.7e-10 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 149 6.8e-10 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 149 6.8e-10 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 150 7.7e-10 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 148 8.4e-10 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 148 8.4e-10 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 148 8.5e-10 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 148 8.8e-10 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 147 1.5e-09 1
UNIPROTKB|Q9U1N0 - symbol:HRP65 "Hrp65 protein" species:7... 135 1.9e-09 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 137 2.2e-09 1
UNIPROTKB|I3LKW5 - symbol:RBM22 "Uncharacterized protein"... 143 3.2e-09 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 142 4.6e-09 1
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 140 4.8e-09 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 146 6.8e-09 1
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 144 7.4e-09 1
FB|FBgn0011305 - symbol:Rsf1 "Repressor splicing factor 1... 132 7.6e-09 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 142 9.3e-09 1
UNIPROTKB|F1SF34 - symbol:F1SF34 "Uncharacterized protein... 134 9.5e-09 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 119 1.0e-08 2
UNIPROTKB|B0QYV1 - symbol:RBM9 "RNA binding protein fox-1... 137 1.1e-08 1
TAIR|locus:2179295 - symbol:RRC1 "reduced red-light respo... 143 1.2e-08 1
FB|FBgn0037220 - symbol:CG14641 species:7227 "Drosophila ... 138 1.2e-08 1
UNIPROTKB|B0QYY7 - symbol:RBFOX2 "RNA-binding protein fox... 130 1.2e-08 1
UNIPROTKB|D6RBQ9 - symbol:HNRNPD "Heterogeneous nuclear r... 130 1.2e-08 1
UNIPROTKB|B0QYY4 - symbol:RBFOX2 "RNA-binding protein fox... 137 1.2e-08 1
UNIPROTKB|J9P300 - symbol:RBFOX2 "RNA binding protein fox... 137 1.3e-08 1
UNIPROTKB|F1M2V8 - symbol:Rbm9 "RNA binding protein fox-1... 137 1.3e-08 1
UNIPROTKB|F1LUP8 - symbol:Rbm9 "RNA binding protein fox-1... 137 1.3e-08 1
WB|WBGene00022235 - symbol:sqd-1 species:6239 "Caenorhabd... 135 1.4e-08 1
UNIPROTKB|F1P8W1 - symbol:RBFOX2 "RNA binding protein fox... 137 1.4e-08 1
UNIPROTKB|O43251 - symbol:RBFOX2 "RNA binding protein fox... 137 1.4e-08 1
WARNING: Descriptions of 861 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 74/103 (71%), Positives = 90/103 (87%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99
++L GGYASNGA G QS+GDSSNTTIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP G
Sbjct: 270 VILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAG 329
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
KGCGFVQF++R +A+EA+ KL+G +IGKQ+VRLSWGR+PANKQ
Sbjct: 330 KGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 372
Score = 113 (44.8 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 37/101 (36%), Positives = 51/101 (50%)
Query: 54 QGPQSEGDSS--NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGKG--CGFV 105
Q P SS N TI++G L + + L FSQ GE+ SVKI G+ GFV
Sbjct: 71 QSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFV 130
Query: 106 QFANRENAEEALHKLNGTVIG--KQSVRLSW-GRNPANKQA 143
+F AE+ L NGT++ +Q RL+W G + K+A
Sbjct: 131 EFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRA 171
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 73/103 (70%), Positives = 91/103 (88%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99
++L GG+ SNG+ G G QS+G+S+N TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVG
Sbjct: 296 VILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG 355
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
KGCGFVQFA+R++AE+A+ LNGTVIGK +VRLSWGR+P NKQ
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQ 397
Score = 107 (42.7 bits), Expect = 0.00044, P = 0.00044
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 66 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 118
++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + AL
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 119 KLNGTVIGKQSVRL 132
++NG + +R+
Sbjct: 263 EMNGAYCSNRQMRV 276
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 78/99 (78%), Positives = 86/99 (86%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GGY +GA +SEGD+ NTTIFVGGLD +VTDEDL+QPFS++GEI SVKIPVGKGCG
Sbjct: 288 GGYMPSGA---FTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG 344
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
FVQF NR NAEEAL KLNGTVIGKQ+VRLSWGRNPANKQ
Sbjct: 345 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 77/99 (77%), Positives = 84/99 (84%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GGY NG + P EGD NTTIFVGGLD +VTDEDL+QPF+++GEI SVKIPVGKGCG
Sbjct: 286 GGYMPNGTLTR-P--EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG 342
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
FVQF NR NAEEAL KLNGTVIGKQ+VRLSWGRNPANKQ
Sbjct: 343 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 106 (42.4 bits), Expect = 0.00063, P = 0.00063
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 111
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 112 NAEEALHKLNGTVIGKQSVRL 132
+A+ ++NG +++R+
Sbjct: 251 ERTKAMTEMNGVKCSSRAMRI 271
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 74/116 (63%), Positives = 91/116 (78%)
Query: 27 RNSSYCQFNIVFLLVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS 86
R ++Y Q N L L GG+ NG+ S+G+S+N+TIFVGGLD +VT+EDL QPFS
Sbjct: 294 RAAAYGQQNGSQALTLAGGHGGNGS-----MSDGESNNSTIFVGGLDADVTEEDLMQPFS 348
Query: 87 QYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
+GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +VRLSWGR+P NKQ
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQ 403
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 58/98 (59%), Positives = 70/98 (71%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
Q Q E D +NTTIFVGGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +A
Sbjct: 271 QATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASA 330
Query: 114 EEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSS 151
E+AL LNGT +G QS+RLSWGR+P++KQ + + S
Sbjct: 331 EQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGS 368
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFV 105
G G + + DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV
Sbjct: 165 GAGERRD-DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFV 223
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQ 153
+FA+ A+ ++NG + + +R+ ANK+ +P ++ Q
Sbjct: 224 KFADESEQLRAMTEMNGVLCSTRPMRIG---PAANKKPVGTPQKATYQ 268
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 55/89 (61%), Positives = 69/89 (77%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
QG E D +NTTIFVG +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR A
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACA 326
Query: 114 EEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
E+AL LNGT +G QS+RLSWGR+P+NKQ
Sbjct: 327 EQALSVLNGTQLGGQSIRLSWGRSPSNKQ 355
Score = 111 (44.1 bits), Expect = 0.00010, P = 0.00010
Identities = 37/116 (31%), Positives = 56/116 (48%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKI----PVG- 99
+A GA G+ Q+EG T+FVG L P+VTD L + F Y + K+ G
Sbjct: 157 WAQLGA-GERRQAEGPEH--TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213
Query: 100 -KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFT-SSTQ 153
KG GFV+FA+ A+ ++NG + +R N K ++ P + +TQ
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAAN--KKPLTMQPASYQNTQ 267
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 57/98 (58%), Positives = 72/98 (73%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFV 105
Y S+ A G ++ D +NTT+FVGGLD +VTD+ L+ FSQYGEI VKIP GK CGFV
Sbjct: 245 YQSSAA---GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFV 301
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA 143
QF+ + AEEAL LNG +G +VRLSWGR+P+NKQ+
Sbjct: 302 QFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQS 339
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 56/91 (61%), Positives = 71/91 (78%)
Query: 54 QGPQS-EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 112
QG + + D +NTTIFVGGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +
Sbjct: 248 QGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKAS 307
Query: 113 AEEALHKLNGTVIGKQSVRLSWGRNPANKQA 143
AE AL LNGT +G QS+RLSWGR+P NKQ+
Sbjct: 308 AEHALSVLNGTQLGGQSIRLSWGRSP-NKQS 337
Score = 114 (45.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 36/105 (34%), Positives = 50/105 (47%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------ 98
+A GA + Q+EG TIFVG L P VTD L F YG + K+ +
Sbjct: 137 WAQAGAGEKRFQTEGPDH--TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGR 194
Query: 99 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA 143
KG GFV+FA+ A+ ++NG + +R+ ANK A
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIG---PAANKNA 236
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 248 (92.4 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 55/112 (49%), Positives = 68/112 (60%)
Query: 44 GGYASNGAPGQG----PQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96
G Y GAP G PQ D +NTT+FVGGL VT+++LR F +GEI VKI
Sbjct: 258 GMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI 317
Query: 97 PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPF 148
P GKGCGFVQF R AE A++++ G IG VRLSWGR+ N + SP+
Sbjct: 318 PPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGPAGSPY 369
Score = 106 (42.4 bits), Expect = 0.00055, P = 0.00055
Identities = 34/111 (30%), Positives = 53/111 (47%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---PVG 99
GG A +GP+ +IFVG L P V + L F S++ S KI P+
Sbjct: 146 GGLADRSRDDRGPEY-------SIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPIS 198
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSP 147
+G GFV+F++ + + AL ++ G G + +R+S P NK + P
Sbjct: 199 GMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTA-TPKNKGPGVVP 248
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 241 (89.9 bits), Expect = 9.4e-20, P = 9.4e-20
Identities = 48/93 (51%), Positives = 65/93 (69%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGF 104
G+ S P PQ D++N+T+FVGGL V++E+L+ F +GEI VKIP GKGCGF
Sbjct: 286 GFYSAAQPV--PQF-ADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGF 342
Query: 105 VQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137
VQF NR++AE A+++L G +G +RLSWGRN
Sbjct: 343 VQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 125 (49.1 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 37/109 (33%), Positives = 56/109 (51%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---P---V 98
+AS G G +S +S +IFVG L PNV + D+ F S+Y S KI P V
Sbjct: 169 WASGG--GLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNV 226
Query: 99 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSP 147
+G GFV+F + + + AL ++ G + G + +R+ P +K SP
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA-TPKSKAHVFSP 274
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 232 (86.7 bits), Expect = 6.3e-19, P = 6.3e-19
Identities = 44/80 (55%), Positives = 59/80 (73%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 118
E D + TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+
Sbjct: 231 ESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQ 290
Query: 119 KLNGTVIGKQSVRLSWGRNP 138
++ G VIG+Q+VR+SW +NP
Sbjct: 291 RMQGQVIGQQAVRISWSKNP 310
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 230 (86.0 bits), Expect = 9.7e-19, P = 9.7e-19
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+FVGGL VT+++LR F +G+I VKIP GKGCGFVQF +R AE A++++
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQM 339
Query: 121 NGTVIGKQSVRLSWGRNPAN 140
G IG VRLSWGR+ N
Sbjct: 340 QGYPIGNSRVRLSWGRSQNN 359
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 222 (83.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF 107
SN P Q S D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ+
Sbjct: 281 SNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQY 339
Query: 108 ANRENAEEALHKLNGTVIGKQSVRLSWGRN 137
+ + AE+A++ + G ++G +RL+WG N
Sbjct: 340 SEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 223 (83.6 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 47/90 (52%), Positives = 61/90 (67%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
QG Q D +NTT+FVGGL +V++ L F +G I VKIP GK CGFV+++NRE A
Sbjct: 511 QGQQFV-DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEA 569
Query: 114 EEALHKLNGTVIGKQSVRLSWGR-NPANKQ 142
EEA+ + G VIG VRLSWGR + +NK+
Sbjct: 570 EEAIAAMQGFVIGGNRVRLSWGRVSVSNKK 599
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 212 (79.7 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 121 NGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQF 154
G ++G +RLSWGR ++ + S ++Q+
Sbjct: 416 QGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQY 449
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 210 (79.0 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 43/85 (50%), Positives = 57/85 (67%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ +R +AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 121 NGTVIGKQSVRLSWGRNPANKQASL 145
G I VRLSWGR+ KQ +L
Sbjct: 369 QGFPIANSRVRLSWGRSA--KQTAL 391
Score = 106 (42.4 bits), Expect = 0.00083, P = 0.00083
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 115
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 116 ALHKLNGTVIGKQSVRL 132
AL ++ G + +++++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 176 (67.0 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N +I + + + WGR+ A
Sbjct: 288 FNKLIINGRRLNVKWGRSQA 307
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 117 LHKL-NGTVIGKQSVRLSWGR-NP----ANKQASLS 146
+L N VI Q ++L+WGR P AN+Q ++
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQDGANQQGGVA 315
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 172 (65.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 117 LHKL-NGTVIGKQSVRLSWGR 136
+L N V+ Q ++L+WGR
Sbjct: 280 AEELSNRLVVNGQRLKLTWGR 300
>UNIPROTKB|E7EW00 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp IPI:IPI00979562 ProteinModelPortal:E7EW00 SMR:E7EW00
Ensembl:ENST00000488497 UCSC:uc011bnj.1 ArrayExpress:E7EW00
Bgee:E7EW00 Uniprot:E7EW00
Length = 425
Score = 165 (63.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>UNIPROTKB|H0Y8D9 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp Ensembl:ENST00000463563 Bgee:H0Y8D9 Uniprot:H0Y8D9
Length = 439
Score = 165 (63.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 258 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 315
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 316 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 356
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 163 (62.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 179 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 238
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 239 FNKLIVNGRRLNVKWGRSQA 258
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 164 (62.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121
+ NT+++VG + TD DLR FS YG+IA V+I + FV++ +E A +A+ ++N
Sbjct: 324 ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMN 383
Query: 122 GTVIGKQSVRLSWGRNPANKQASLSP 147
G + VR SWGR A +L+P
Sbjct: 384 GKEMAGNQVRCSWGRTQAVPNQALNP 409
Score = 151 (58.2 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEE 115
S + +FVG L +V++E L+ F+++GE++ K+ KG GFV F N++NAE
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 116 ALHKLNGTVIGKQSVRLSW 134
A+ +NG IGK++VR +W
Sbjct: 282 AIAGMNGKWIGKRAVRTNW 300
>UNIPROTKB|Q7ZXB5 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0017069
KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:BC045067 RefSeq:NP_001080776.1
UniGene:Xl.4959 ProteinModelPortal:Q7ZXB5 SMR:Q7ZXB5 GeneID:380469
KEGG:xla:380469 Xenbase:XB-GENE-971204 Uniprot:Q7ZXB5
Length = 417
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|F2Z4G3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
UniGene:Bt.28600 GeneTree:ENSGT00390000002792 EMBL:DAAA02020630
IPI:IPI00716918 ProteinModelPortal:F2Z4G3 SMR:F2Z4G3 PRIDE:F2Z4G3
Ensembl:ENSBTAT00000042873 NextBio:20925883 Uniprot:F2Z4G3
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q9NW64 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000060 "protein import into nucleus,
translocation" evidence=IDA] [GO:0048306 "calcium-dependent protein
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IDA] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=IDA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IDA]
[GO:0017069 "snRNA binding" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0005737 EMBL:CH471062 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 EMBL:AC008453
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW
EMBL:AL136933 EMBL:AK001152 EMBL:AK297019 EMBL:BC003402 EMBL:U39402
IPI:IPI00019046 IPI:IPI00909290 RefSeq:NP_060517.1
UniGene:Hs.713564 PDB:2YTC PDBsum:2YTC ProteinModelPortal:Q9NW64
SMR:Q9NW64 IntAct:Q9NW64 STRING:Q9NW64 PhosphoSite:Q9NW64
DMDM:74762758 PaxDb:Q9NW64 PRIDE:Q9NW64 DNASU:55696
Ensembl:ENST00000199814 Ensembl:ENST00000447771 GeneID:55696
KEGG:hsa:55696 UCSC:uc003lst.3 GeneCards:GC05M150050
HGNC:HGNC:25503 HPA:HPA001634 MIM:612430 neXtProt:NX_Q9NW64
PharmGKB:PA134982384 InParanoid:Q9NW64 EvolutionaryTrace:Q9NW64
GenomeRNAi:55696 NextBio:60521 ArrayExpress:Q9NW64 Bgee:Q9NW64
CleanEx:HS_RBM22 Genevestigator:Q9NW64 GermOnline:ENSG00000086589
Uniprot:Q9NW64
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q4R4J1 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9541
"Macaca fascicularis" [GO:0005487 "nucleocytoplasmic transporter
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0017069 "snRNA
binding" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
HOVERGEN:HBG083475 HSSP:Q6PHZ5 EMBL:AB169903
ProteinModelPortal:Q4R4J1 SMR:Q4R4J1 PRIDE:Q4R4J1 Uniprot:Q4R4J1
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q5RAY5 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9601
"Pongo abelii" [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0033120
"positive regulation of RNA splicing" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0036002 "pre-mRNA
binding" evidence=ISS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 KO:K12872 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 CTD:55696 HOVERGEN:HBG083475 HSSP:Q6PHZ5
EMBL:CR858876 RefSeq:NP_001125624.1 UniGene:Pab.12645
ProteinModelPortal:Q5RAY5 SMR:Q5RAY5 GeneID:100172542
KEGG:pon:100172542 InParanoid:Q5RAY5 Uniprot:Q5RAY5
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>MGI|MGI:1914060 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10090
"Mus musculus" [GO:0000060 "protein import into nucleus,
translocation" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=ISO] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO] [GO:0033554 "cellular response to stress"
evidence=ISO] [GO:0036002 "pre-mRNA binding" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048306
"calcium-dependent protein binding" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0090316 "positive
regulation of intracellular protein transport" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1914060 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
CTD:55696 HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:AK018452 EMBL:AK045116
EMBL:AK150271 EMBL:AK151758 EMBL:AK152252 EMBL:AK166600
EMBL:AK167509 EMBL:AK168919 EMBL:BC080205 IPI:IPI00221951
RefSeq:NP_080052.1 UniGene:Mm.275106 ProteinModelPortal:Q8BHS3
SMR:Q8BHS3 STRING:Q8BHS3 PhosphoSite:Q8BHS3 PaxDb:Q8BHS3
PRIDE:Q8BHS3 Ensembl:ENSMUST00000025506 GeneID:66810 KEGG:mmu:66810
UCSC:uc008fal.1 InParanoid:Q8BHS3 ChiTaRS:RBM22 NextBio:322703
Bgee:Q8BHS3 CleanEx:MM_RBM22 Genevestigator:Q8BHS3
GermOnline:ENSMUSG00000024604 Uniprot:Q8BHS3
Length = 420
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKLIVNGRRLNVKWGRSQA 307
>UNIPROTKB|E2RG35 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0090316 "positive regulation of intracellular
protein transport" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent protein
binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0033554 "cellular response to stress"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0000060 "protein import
into nucleus, translocation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005737 GO:GO:0033554
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0000060 GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 OMA:ILADKAC
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
GeneTree:ENSGT00390000002792 EMBL:AAEX03003093
ProteinModelPortal:E2RG35 Ensembl:ENSCAFT00000028740 Uniprot:E2RG35
Length = 422
Score = 163 (62.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 230 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 289
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 290 FNKLIVNGRRLNVKWGRSQA 309
>UNIPROTKB|Q3B7L8 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9913
"Bos taurus" [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0017069 "snRNA binding" evidence=ISS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=ISS] [GO:0090316
"positive regulation of intracellular protein transport"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0033554 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 GO:GO:0005487
EMBL:BC107551 IPI:IPI00709529 RefSeq:NP_001032907.1
UniGene:Bt.28600 ProteinModelPortal:Q3B7L8 SMR:Q3B7L8 PRIDE:Q3B7L8
GeneID:512330 KEGG:bta:512330 CTD:55696 HOVERGEN:HBG083475
InParanoid:Q3B7L8 OrthoDB:EOG40S0FW NextBio:20870344 Uniprot:Q3B7L8
Length = 420
Score = 162 (62.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 288 FNKFIVNGRRLNVKWGRSQA 307
>UNIPROTKB|Q6P616 [details] [associations]
symbol:rbm22 "Pre-mRNA-splicing factor RBM22" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0017069 eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
OMA:RNRAHIC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:CR761977 EMBL:BC062518
RefSeq:NP_989108.1 UniGene:Str.5987 ProteinModelPortal:Q6P616
SMR:Q6P616 STRING:Q6P616 Ensembl:ENSXETT00000044114 GeneID:394713
KEGG:xtr:394713 Xenbase:XB-GENE-971198 InParanoid:Q6P616
Bgee:Q6P616 Uniprot:Q6P616
Length = 417
Score = 161 (61.7 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIE 158
N ++ + + + WGR+ A + SS K+E
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAARGKERERDGSSDPGMKLE 326
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 166 (63.5 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 35/98 (35%), Positives = 57/98 (58%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV------- 98
S+ + G GD + T +++G L+P ++++ L + F +YG +AS+KI P
Sbjct: 199 SSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQR 258
Query: 99 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G+ CGFV + +R++AE AL LNG I +RL WG+
Sbjct: 259 GRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGK 296
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 165 (63.1 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 213 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 270
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 271 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 311
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 165 (63.1 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 212 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 269
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 270 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 310
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 165 (63.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 165 (63.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 165 (63.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 165 (63.1 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 39/101 (38%), Positives = 56/101 (55%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG--- 99
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI P
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>WB|WBGene00011722 [details] [associations]
symbol:T11G6.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
GeneTree:ENSGT00390000002792 EMBL:Z69384 PIR:T24851
RefSeq:NP_502014.2 ProteinModelPortal:Q22412 SMR:Q22412
STRING:Q22412 PaxDb:Q22412 EnsemblMetazoa:T11G6.8.1
EnsemblMetazoa:T11G6.8.2 GeneID:177979 KEGG:cel:CELE_T11G6.8
UCSC:T11G6.8.1 CTD:177979 WormBase:T11G6.8 InParanoid:Q22412
OMA:CAFVQYT NextBio:899214 Uniprot:Q22412
Length = 408
Score = 158 (60.7 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 36/105 (34%), Positives = 58/105 (55%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPN----VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQ 106
AP P + D++ TT+++G L P+ VT++DL F QYG+I +++ KGC F++
Sbjct: 223 APTLSPPA--DTTITTLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIE 280
Query: 107 FANRENAEEALHK-LNGTVIGKQSVRLSWGRNPANKQASLSPFTS 150
F RE AE A + N T I + + + WG A + A S + +
Sbjct: 281 FTTREAAERAAERSFNKTFIKGKRLTIRWGEPQAKRAADNSNYVT 325
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 157 (60.3 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 35/116 (30%), Positives = 60/116 (51%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T +D+R F+ +G I+ ++ GK G
Sbjct: 80 NWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGY 139
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ ++ G +G + +R +W R P +A+ T F ++
Sbjct: 140 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEV 195
Score = 145 (56.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I V++ KG FV+F + E+A A+
Sbjct: 197 NQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAI 256
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT + V+ WG+
Sbjct: 257 VSVNGTSLEGHIVKCYWGK 275
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 101
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 261 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 318
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 319 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 163 (62.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG-------KG 101
APG GD S T +++G ++P + +E L Q F ++G +ASVKI P +
Sbjct: 261 APGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERN 318
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 319 CGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 153 (58.9 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 75 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 134
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
GFV F N+ +AE A+ ++ G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 135 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 188
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 153 (58.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
GFV F N+ +AE A+ ++ G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 192
Score = 103 (41.3 bits), Expect = 0.00082, P = 0.00082
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLS 146
AL +NG ++GK+ V+++W P++++ S
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTS 92
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 41 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 100
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 101 VSVNGTTIEGHVVKCYWGK 119
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 149 (57.5 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 75 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 134
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 135 VSVNGTTIEGHVVKCYWGK 153
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 153 (58.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ ++D+ +RQ FS +G+I +++ KG FV+F + E A A+
Sbjct: 199 NQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAI 258
Query: 118 HKLNGTVIGKQSVRLSWGRNPANKQA 143
+NGT I +V+ WG+ A+ ++
Sbjct: 259 VSVNGTCIEGHTVKCYWGKETADMRS 284
Score = 149 (57.5 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 31/98 (31%), Positives = 56/98 (57%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P ++ +D+R F+ +G+I+ ++ GK G
Sbjct: 81 NWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGY 140
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPA 139
GF+ F N+ +AE A+ ++NG +G + +R +W R P+
Sbjct: 141 GFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPS 178
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 155 (59.6 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---P---VGKGCGF 104
+PG P+++ SS+ IFVG L P + E LR+ F+ +GEI++ +I P KG F
Sbjct: 82 SPGNQPKTD-ISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAF 140
Query: 105 VQFANRENAEEALHKLNGTVIGKQSVRLSW 134
V F + AE A+ +NG IG +S+R +W
Sbjct: 141 VSFVKKAEAENAIQAMNGQWIGSRSIRTNW 170
Score = 138 (53.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 37/113 (32%), Positives = 58/113 (51%)
Query: 43 IGGYASNGAPGQGPQ--------SEGDSSNTTIFVGGLDPNVTDEDL-RQPFSQYGEIAS 93
+GG NG+ +G Q ++ +NTT++ GG PNV +DL + F Q+G I
Sbjct: 191 MGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQD 250
Query: 94 VKIPVGKGCGFVQFANRENAEEAL-HKLNGTVIGKQSVRLSWGR-NPANKQAS 144
V++ KG F++F +E A A+ H N V G V+ WG+ N + A+
Sbjct: 251 VRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNL-VKCFWGKENGGDNSAN 302
Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKGCGFVQFANRENAEEAL 117
+S T++VG LD +V+++ L FS G + S KI P F++++N + A AL
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTAL 62
Query: 118 HKLNGTVIGKQSVRLSWGRNPANK 141
+N + ++ ++++W +P N+
Sbjct: 63 TAMNKRLFLEKEIKVNWATSPGNQ 86
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 153 (58.9 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
GFV F N+ +AE A+ ++ G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 192
Score = 148 (57.2 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 196 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 255
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 256 VSVNGTTIEGHVVKCYWGK 274
Score = 104 (41.7 bits), Expect = 0.00097, P = 0.00097
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAS 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLS 146
AL +NG ++GK+ V+++W P++++ S
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTS 92
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 153 (58.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G I+ ++ GK G
Sbjct: 79 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY 138
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
GFV F N+ +AE A+ ++ G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 139 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 192
Score = 149 (57.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
S+ N T++ GG+ +T++ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 196 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 255
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 256 VSVNGTTIEGHVVKCYWGK 274
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 153 (58.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 33/99 (33%), Positives = 59/99 (59%)
Query: 52 PGQGPQSEGDSS-NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGF 104
PGQ QS+ D++ + +FVG L V ++ LR+ F +G+++ K+ KG GF
Sbjct: 122 PGQ-QQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGF 180
Query: 105 VQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQ 142
V + RE AE A+ ++NG +G++++R +W R P +++
Sbjct: 181 VSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQE 219
Score = 152 (58.6 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
Q+ GD NT+++VG + ++T++++RQ F+ +G I V+I +G FV+F N++ A +A
Sbjct: 235 QTSGD--NTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 291
Query: 117 LHKLNGTVIGKQSVRLSWGR 136
+ ++N +G Q VR SWG+
Sbjct: 292 IVQMNNQDVGGQLVRCSWGK 311
Score = 111 (44.1 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKG--CGFVQFANRENAEEA 116
G T++VG LD VT++ + F+Q G + K+ G FV+F++ A +A
Sbjct: 41 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQA 100
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQASL 145
L +N ++ + ++++W P +Q+ +
Sbjct: 101 LQTMNKRLLLDREMKVNWAVEPGQQQSKI 129
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 158 (60.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 37/97 (38%), Positives = 54/97 (55%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG------- 99
+ APG GD + T +++G ++P + +E L Q F +YG +ASVKI P
Sbjct: 194 DSAPGS--HDVGDPTTTNLYLGNINPQMNEEMLCQEFGRYGPLASVKIMWPRTDEERARE 251
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F R +AE AL LNG +I ++L WG+
Sbjct: 252 RNCGFVAFMTRRDAERALKHLNGKMIMNFEMKLGWGK 288
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 151 (58.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
S+ +N T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+
Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 267 VSVNGTTIEGHVVKCYWGK 285
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
AL +NG ++GK+ V+++W P++++ S T STQ
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 100
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 150 (57.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDV 213
Score = 149 (57.5 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 150 (57.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDV 213
Score = 149 (57.5 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 150 (57.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 26/90 (28%), Positives = 51/90 (56%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +T+ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 216 NQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAI 275
Query: 118 HKLNGTVIGKQSVRLSWGRNPANKQASLSP 147
+NGT I V+ WG+ + ++ P
Sbjct: 276 VSVNGTTIEGHVVKCYWGKESPDMAKNVQP 305
Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T +D+R F+ +G+I+ ++ GK G
Sbjct: 99 NWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGY 158
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 138
GFV F N+ +AE A+ + G +G + +R +W R P
Sbjct: 159 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 195
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 150 (57.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDV 213
Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 150 (57.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDV 213
Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 149 (57.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 258 VSVNGTTIEGHVVKCYWGK 276
Score = 149 (57.5 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 196
Score = 107 (42.7 bits), Expect = 0.00035, P = 0.00035
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 114
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 115 EALHKLNGT-VIGKQSVRLSWGRNPANKQASLS 146
AL +NG ++GK+ V+++W P++++ S
Sbjct: 63 AALAAMNGRKILGKE-VKVNWATTPSSQKKDTS 94
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 149 (57.5 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 258 VSVNGTTIEGHVVKCYWGK 276
Score = 149 (57.5 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 196
Score = 107 (42.7 bits), Expect = 0.00036, P = 0.00036
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 114
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 115 EALHKLNGT-VIGKQSVRLSWGRNPANKQASLS 146
AL +NG ++GK+ V+++W P++++ S
Sbjct: 63 AALAAMNGRKILGKE-VKVNWATTPSSQKKDTS 94
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
S+ N T++ GG+ +T++ +RQ FS +G+I +++ KG F++F++ E+A A+
Sbjct: 203 SQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAI 262
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 263 VSVNGTTIEGHVVKCYWGK 281
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 164 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 199
Score = 106 (42.4 bits), Expect = 0.00052, P = 0.00052
Identities = 32/95 (33%), Positives = 52/95 (54%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEEALHKL 120
T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A AL +
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAM 62
Query: 121 NGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
NG ++GK+ V+++W P++++ S T STQ
Sbjct: 63 NGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 96
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 150 (57.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 52 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFV 105
PG+ S + +FVG L + LR+ F ++GE++ KI GKG GFV
Sbjct: 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRLSWG-RNP 138
+ RE+AE A+ ++NG +G++++R +W R P
Sbjct: 179 SYPRREDAERAIDEMNGAWLGRRTIRTNWATRKP 212
Score = 136 (52.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 26/80 (32%), Positives = 51/80 (63%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ + NT+++VG + N+ ++++R+ F ++G I V+ +G FV+F +E+A A+
Sbjct: 249 NQAAADNTSVYVGNI-ANLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAI 307
Query: 118 HKLNGTVIGKQSVRLSWGRN 137
++N IG Q VR SWG++
Sbjct: 308 VQMNNADIGGQIVRCSWGKS 327
Score = 115 (45.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 34/106 (32%), Positives = 52/106 (49%)
Query: 51 APGQGPQ-SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FV 105
A +G Q + G T+FV LDP +TDE L F+Q G + KI + +G FV
Sbjct: 25 AEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKI-IFEGLNDPYAFV 83
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLS-PFTS 150
+F++ A AL NG + ++ + ++W P + S P TS
Sbjct: 84 EFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETS 129
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 214 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 273
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 274 VSVNGTTIEGHVVKCYWGK 292
Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 97 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 156
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 157 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 212
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 213
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 213
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
Score = 149 (57.5 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 213
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 150 (57.9 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 42/114 (36%), Positives = 60/114 (52%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-PV---- 98
GGY AP + + ++VGGLDP VT++ L+Q F G + SVKI P
Sbjct: 77 GGYVRRAAP--------EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFN 128
Query: 99 GKGC--GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG--RNPANKQASLSPF 148
KG GFV+F + AE A+ LNG I + +R++W N ANK+ + + F
Sbjct: 129 SKGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHF 182
Score = 134 (52.2 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 37/107 (34%), Positives = 55/107 (51%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK- 100
Y SN A E S++ IFVG L V DE L Q FS +G ++ ++ G+
Sbjct: 168 YQSNTA-----NKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRS 222
Query: 101 -GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLS 146
G GFV F R +AE+AL ++G +G +++R +W Q S+S
Sbjct: 223 RGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKG--QPSIS 267
Score = 127 (49.8 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 124
TT +VG L P T D+ F +G + ++ +G F++ ENA A+ +LNG
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYN 367
Query: 125 IGKQSVRLSWGRN--PANK------QASLSPFTSS 151
+ + ++ SWG++ P + Q + SPF SS
Sbjct: 368 VNGRPLKCSWGKDRPPTGQFDNFPGQQANSPFASS 402
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 148 (57.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 267 VSVNGTTIEGHVVKCYWGK 285
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
AL +NG ++GK+ V+++W P++++ S T STQ
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 100
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 148 (57.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 267 VSVNGTTIEGHVVKCYWGK 285
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
AL +NG ++GK+ V+++W P++++ S T STQ
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 100
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 267 VSVNGTTIEGHVVKCYWGK 285
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
AL +NG ++GK+ V+++W P++++ S T STQ
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 100
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 148 (57.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+NGT I V+ WG+
Sbjct: 267 VSVNGTTIEGHVVKCYWGK 285
Score = 144 (55.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
AL +NG ++GK+ V+++W P++++ S T STQ
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 100
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NT I+V LD + + L+ F YGEI+ +K+ K FV F NRE+AE A L
Sbjct: 209 DPNNTAIYVSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAFG-L 267
Query: 121 NGTVIGKQSVRLSWGRN--PANKQASLSP 147
N +G +++ WG+N P K ++P
Sbjct: 268 NNFPVGNTRLKVQWGKNVAPPPKSPPMTP 296
Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
Identities = 31/110 (28%), Positives = 57/110 (51%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKI------PVGKGCGFVQ 106
Q Q + S+ ++++G L +VTD+ L F +Y + S ++ + +G GFV+
Sbjct: 102 QQQQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVK 161
Query: 107 FANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK----QASLSPFTSST 152
FA+ ++AL +NG I + ++++ NP +K Q S P +ST
Sbjct: 162 FASDVEKDKALIDMNGFYINNKPIKVN---NPTHKRLNSQTSTIPDLTST 208
>UNIPROTKB|Q9U1N0 [details] [associations]
symbol:HRP65 "Hrp65 protein" species:7153 "Chironomus
tentans" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005856
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
EMBL:AJ243013 EMBL:AJ404654 ProteinModelPortal:Q9U1N0
InterPro:IPR012975 Pfam:PF08075 Uniprot:Q9U1N0
Length = 535
Score = 135 (52.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121
S +++G L +VT+E+L++ FS YGEI+ I K F++ R NAE A L+
Sbjct: 110 SGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLD 169
Query: 122 GTVIGKQSVRLSWGRNPAN-KQASLSPFTSSTQ-FKKIE 158
G + + +R+ + N + +L+PF S+ FK E
Sbjct: 170 GRMRKNKPIRIRFAPNATTIRVKNLTPFVSNELLFKSFE 208
Score = 34 (17.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 50 GAPGQGPQSEGDSSNTTIFV 69
G PG GP+ G N V
Sbjct: 68 GGPGMGPR--GPMKNEDFIV 85
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ GK G GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNP 138
G +G + +R +W R P
Sbjct: 168 GGQWLGGRQIRTNWATRKP 186
Score = 108 (43.1 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANRENAEE 115
D T++VG L +VT+ + Q FSQ G + K+ G C FV+F +A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 116 ALHKLNGT-VIGKQSVRLSWGRNPANKQASLSPFTS-STQ 153
AL +NG ++GK+ V+++W P++++ S T STQ
Sbjct: 62 ALAAMNGRKIMGKE-VKVNWATTPSSQKKDTSSSTVVSTQ 100
>UNIPROTKB|I3LKW5 [details] [associations]
symbol:RBM22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090316 "positive regulation of intracellular protein
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0036002 "pre-mRNA binding" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005487 "nucleocytoplasmic transporter activity" evidence=IEA]
[GO:0000060 "protein import into nucleus, translocation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 OMA:ILADKAC GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 GeneTree:ENSGT00390000002792
Ensembl:ENSSSCT00000022932 Uniprot:I3LKW5
Length = 402
Score = 143 (55.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL + +++L F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 210 DKTITTLYVGGLGRDGVEKNLPNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 269
Query: 120 LNGTVIGKQSVRLSWGRNPA 139
N ++ + + + WGR+ A
Sbjct: 270 FNKLIVNGRRLNVKWGRSQA 289
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 142 (55.0 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A G Q E SS+ IFVG L P VTD L Q FS + + ++ G+ G
Sbjct: 129 NWAYATG-QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGF 187
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139
GFV F N+++A+ A++++NG + + +R +W A
Sbjct: 188 GFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Score = 114 (45.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVGKGCGFVQFANRENAEEA 116
E +S TT++VG L P VT DL + F G I V++ KG GFV++ A A
Sbjct: 259 ENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALA 318
Query: 117 LHKLNGT-VIGKQSVRLSWGRNPANKQASLSP 147
+ N + + ++ SWG P + +P
Sbjct: 319 IQMGNTQPYLFNRQIKCSWGNKPTPPGTASNP 350
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 140 (54.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PV-GKGCGFVQFANRENAEE 115
D N+ ++VGGL ++T+E +R+ FS YG + +VKI V GK GFV F+NR +A++
Sbjct: 4 DDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADD 62
Query: 116 ALHKLNGTVIGKQSVRLS 133
A+ ++G IG ++VR++
Sbjct: 63 AIEDMDGKSIGGRAVRVN 80
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 146 (56.5 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
+S + I++G + N+ ++++R+ +YGEI S++I K C FV F N NA AL L
Sbjct: 1007 NSISRAIYIGNVSDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTL 1066
Query: 121 NGTVIGKQSVRLSWGR 136
NG +G VR+++G+
Sbjct: 1067 NGKKLGDTIVRVNYGK 1082
Score = 116 (45.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANREN 112
G G + E + ++VG + +V+++DL+ F +GE+ SV+I K C FV F +
Sbjct: 903 GDG-EDEDHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNE 961
Query: 113 AEEALHKLNGTVIGKQSVRLSWGRNP 138
A A ++ V+G Q + +++ R+P
Sbjct: 962 AINAKKGMHNQVLGSQYIVVNF-RHP 986
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 144 (55.7 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PV---GKGCGFVQFANRENAEEALHKL 120
IFVG L + + LR+ F+ +GEI+ ++ P KG GFV F + AE A+ +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFT 149
NG +G +S+R +W R P + ++ P T
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKENIKPLT 552
Score = 140 (54.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 58 SEGDSSNTTIFVGGLDPNVT---DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAE 114
++ SN T++VGG++ +T +E L++ F+ YG I +++ KG FV+F+ +E A
Sbjct: 558 NQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAAT 617
Query: 115 EALHKLNGTVIGKQSVRLSWGR---NPANKQ 142
A+ ++ T I Q V+ SWG+ +P N Q
Sbjct: 618 HAIVGVHNTEINAQPVKCSWGKESGDPNNAQ 648
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALH 118
GD T ++VG L V +DL F++YG++ SV I G FV+F +R++AE+A
Sbjct: 2 GDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACD 61
Query: 119 KLNGT-VIGKQ-SVRLSWGR 136
LNG+ ++G Q V +S GR
Sbjct: 62 ILNGSELLGSQLRVEISKGR 81
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 142 (55.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 31/94 (32%), Positives = 55/94 (58%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 116
S +++ LD +V DE L++ FS+YG + S K+ P G +G GFV ++N E A A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTS 150
L ++NG +IG++ + ++ + +++A L S
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEA 116
S IF+ LD ++ ++ L + FS +G I S K+ + KG GFVQF E+A+ A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 117 LHKLNGTVIGKQSV 130
+ KLNG ++ + V
Sbjct: 193 IDKLNGMLMNDKQV 206
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 134 (52.2 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
++ S N T++ GG+ +TD+ +RQ FS +G+I +++ K FV+F+ +A A+
Sbjct: 76 NQSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKRYSFVRFSTHGSAAHAI 135
Query: 118 HKLNGTVIGKQSVRLSWGR 136
+ GT I + V+ WG+
Sbjct: 136 VSVTGTTIEGRVVKCYWGK 154
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 119 (46.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 41 VLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---- 96
++ GGY S+G G D S ++FVG + +V+++ +R FS+ G + S+K+
Sbjct: 1 MMSGGYKSSGV-G------NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDR 53
Query: 97 PVGK--GCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132
GK G GF++F + + AE A+ LNG + + +R+
Sbjct: 54 ETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRV 91
Score = 37 (18.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 140 NKQASLSPFTSSTQ 153
NK A+L+PF ++ Q
Sbjct: 197 NKAATLTPFHNTPQ 210
>UNIPROTKB|B0QYV1 [details] [associations]
symbol:RBM9 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044 InterPro:IPR025670
Pfam:PF12414 EMBL:AL079295 IPI:IPI00843981 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
SMR:B0QYV1 STRING:B0QYV1 Ensembl:ENST00000397303 Uniprot:B0QYV1
Length = 357
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 68 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 127
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 128 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 186
Query: 155 KKI 157
+
Sbjct: 187 SPV 189
>TAIR|locus:2179295 [details] [associations]
symbol:RRC1 "reduced red-light responses in cry1cry2
background 1" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0045492
"xylan biosynthetic process" evidence=RCA] [GO:0050665 "hydrogen
peroxide biosynthetic process" evidence=RCA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
PROSITE:PS50800 SMART:SM00360 SMART:SM00648 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 EMBL:AF360212 EMBL:AY040060 IPI:IPI00527464
RefSeq:NP_568464.1 UniGene:At.23362 PDB:2E62 PDBsum:2E62
ProteinModelPortal:Q9C5J3 SMR:Q9C5J3 IntAct:Q9C5J3 PRIDE:Q9C5J3
EnsemblPlants:AT5G25060.1 GeneID:832577 KEGG:ath:AT5G25060
TAIR:At5g25060 HOGENOM:HOG000030509 InParanoid:Q9C5J3 OMA:EPYIMIT
PhylomeDB:Q9C5J3 ProtClustDB:CLSN2689864 EvolutionaryTrace:Q9C5J3
ArrayExpress:Q9C5J3 Genevestigator:Q9C5J3 Uniprot:Q9C5J3
Length = 946
Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PVG------- 99
+G PG +GD T ++VG L P V + L + F ++G IASVKI P
Sbjct: 165 SGRPGSF--DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQ 222
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR + + A ++ G ++ + +++ WG+
Sbjct: 223 RNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGK 259
>FB|FBgn0037220 [details] [associations]
symbol:CG14641 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:NOG277760
KO:K12872 GO:GO:0000381 HSSP:P33240 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AY061516 RefSeq:NP_649440.3 UniGene:Dm.3575
SMR:Q95RB1 IntAct:Q95RB1 MINT:MINT-289131 STRING:Q95RB1
EnsemblMetazoa:FBtr0078985 GeneID:40529 KEGG:dme:Dmel_CG14641
UCSC:CG14641-RA FlyBase:FBgn0037220 InParanoid:Q95RB1
OrthoDB:EOG4N5TC7 GenomeRNAi:40529 NextBio:819204 Uniprot:Q95RB1
Length = 418
Score = 138 (53.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VG L +T+ +LR F Q+GEI S+ + + C FVQ+ R AE A +
Sbjct: 228 DRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPRQQCAFVQYTKRNAAELAAERT 287
Query: 120 LNGTVIGKQSVRLSWGRNPANKQAS 144
N VI + V + W + A KQ +
Sbjct: 288 FNKLVIQGRKVSIKWAHSQA-KQGT 311
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/89 (38%), Positives = 46/89 (51%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 110 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 169
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI 125
KG GFV F N +A+ A KL+GTV+
Sbjct: 170 RGSKGFGFVTFENSADADRAREKLHGTVV 198
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/100 (37%), Positives = 56/100 (56%)
Query: 44 GGYASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--S 93
GG AS G G +SEG D+S +F+GGL + T +DL+ FS++GE+ +
Sbjct: 49 GGTASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
Query: 94 VKI-PV---GKGCGFVQFANRENAEEAL----HKLNGTVI 125
+K+ P+ +G GFV F E+ ++ + HKLNG VI
Sbjct: 109 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 148
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 67 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 126
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 127 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 185
Query: 155 KKI 157
+
Sbjct: 186 SPV 188
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 87 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 146
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 147 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 205
Query: 155 KKI 157
+
Sbjct: 206 SPV 208
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 87 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 146
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 147 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 205
Query: 155 KKI 157
+
Sbjct: 206 SPV 208
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 137 (53.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 87 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 146
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 147 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 205
Query: 155 KKI 157
+
Sbjct: 206 SPV 208
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 135 (52.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 43 IGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---- 98
I G AS G ++G+ IFVGG+ P V +EDL F+QYGE+A ++
Sbjct: 8 INGNASETIKENGHSTKGNEDKK-IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTN 66
Query: 99 --GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
+G FV+F E + AL T+ GK SV + ++ NK+
Sbjct: 67 GRSRGFAFVEFTTGEGCKLALAAREQTIKGK-SVEVKPAKSRENKK 111
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 97 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 156
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 157 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 215
Query: 155 KKI 157
+
Sbjct: 216 SPV 218
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 97 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 156
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 157 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 215
Query: 155 KKI 157
+
Sbjct: 216 SPV 218
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 103 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 162
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 163 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 221
Query: 155 KKI 157
+
Sbjct: 222 SPV 224
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 105 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 164
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 165 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 223
Query: 155 KKI 157
+
Sbjct: 224 SPV 226
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 122 (48.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANR 110
QS ++ +FVG LD TD DL++ F Q G+I V++ GK G GFV F +
Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDI 279
Query: 111 ENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIE 158
+ +A+ +G S RL +G + + + + SP S +F E
Sbjct: 280 DTCMKAME------LGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDAE 321
Score = 34 (17.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 2 EKRRHCCERKGERE 15
++++H E++GE E
Sbjct: 20 KRKKHESEKEGENE 33
>UNIPROTKB|F1N2A9 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0003714
GO:GO:0045892 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 InterPro:IPR025670
Pfam:PF12414 IPI:IPI00685735 OMA:HGEQSTN EMBL:DAAA02013800
Ensembl:ENSBTAT00000026808 Uniprot:F1N2A9
Length = 398
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 105 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 164
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 165 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 223
Query: 155 KKI 157
+
Sbjct: 224 SPV 226
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ GK G
Sbjct: 42 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 101
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVR 131
GFV F N+ +AE A+ + G +G + +R
Sbjct: 102 GFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 140 (54.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 34/108 (31%), Positives = 56/108 (51%)
Query: 44 GGYASNGAPGQ-GP--QSEGDSSNTT----IFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96
GGY P Q P Q++G ++ G ++P T+E++R FSQ+G + ++KI
Sbjct: 149 GGYMGGNGPNQMAPHYQNKGAGGQLEPTKIVWAGNINPESTEEEVRHLFSQFGYLQAIKI 208
Query: 97 PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQAS 144
K C F+ FA+ A +A LNGT+ ++L +G+ QA+
Sbjct: 209 IPNKQCAFITFADVNCAIQAQFNLNGTIFRGLPLKLGFGKVENAPQAN 256
Score = 129 (50.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/89 (29%), Positives = 53/89 (59%)
Query: 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEE 115
P E ++ +++G ++ NV+ E L+Q F Q+G + +++I G+GC FV F E+A
Sbjct: 268 PHQE-ETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGRGCAFVNFFTVESAAA 326
Query: 116 ALHKLNGTVIGKQSVRLSWGRNPANKQAS 144
A + LNGT++ +++++ + ++ S
Sbjct: 327 ARNGLNGTMVCGMPLKINFRKEEDSRHIS 355
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 156 K 156
+
Sbjct: 200 E 200
>UNIPROTKB|F1NCA4 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003714 "transcription
corepressor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IEA] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AADN02006252 EMBL:AADN02006253 IPI:IPI00583090
Ensembl:ENSGALT00000020480 Uniprot:F1NCA4
Length = 377
Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 88 GGAQTDGQQSQTQSSENTESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 147
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 148 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 206
Query: 155 KKI 157
+
Sbjct: 207 SPV 209
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 139 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 198
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 199 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 257
Query: 155 KKI 157
+
Sbjct: 258 SPV 260
>MGI|MGI:1933973 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C.
elegans) 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IGI;IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724
"regulation of definitive erythrocyte differentiation"
evidence=IDA] [GO:0021942 "radial glia guided migration of Purkinje
cell" evidence=IMP] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0050885 "neuromuscular process
controlling balance" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933973
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1
OrthoDB:EOG4NVZKS eggNOG:NOG293807 CTD:23543 OMA:HGEQSTN
ChiTaRS:RBFOX2 EMBL:AF387322 EMBL:AY659951 EMBL:AY659952
EMBL:AY659953 EMBL:AF229055 EMBL:AY904025 EMBL:DQ017388
EMBL:DQ017389 EMBL:AK044929 EMBL:AK077594 EMBL:BC002124
EMBL:BC027263 IPI:IPI00153656 IPI:IPI00223425 IPI:IPI00331207
IPI:IPI00606741 IPI:IPI00785326 IPI:IPI00877224 IPI:IPI00877264
IPI:IPI00877283 IPI:IPI00886410 RefSeq:NP_001104297.1
RefSeq:NP_001104298.1 RefSeq:NP_001104299.1 RefSeq:NP_001104300.1
RefSeq:NP_444334.3 RefSeq:NP_780596.1 UniGene:Mm.202774
ProteinModelPortal:Q8BP71 SMR:Q8BP71 STRING:Q8BP71
PhosphoSite:Q8BP71 PaxDb:Q8BP71 PRIDE:Q8BP71
Ensembl:ENSMUST00000048145 Ensembl:ENSMUST00000111581
Ensembl:ENSMUST00000166610 Ensembl:ENSMUST00000171751 GeneID:93686
KEGG:mmu:93686 UCSC:uc007wnc.2 UCSC:uc007wnd.2 UCSC:uc007wne.2
UCSC:uc007wnf.2 UCSC:uc007wng.2 UCSC:uc007wni.2 UCSC:uc011zvf.1
UCSC:uc011zvg.1 NextBio:351415 Bgee:Q8BP71 CleanEx:MM_RBM9
Genevestigator:Q8BP71 Uniprot:Q8BP71
Length = 449
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTT---IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG- 99
GG ++G Q SE S +T + V + D DLRQ F Q+G+I V+I
Sbjct: 156 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 215
Query: 100 ---KGCGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQF 154
KG GFV F N +A+ A KL+GTV+ G++ V + R NK+ ++P+ + +
Sbjct: 216 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM-VTPYANGWKL 274
Query: 155 KKI 157
+
Sbjct: 275 SPV 277
>UNIPROTKB|F1P555 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AADN02043825 EMBL:AADN02043826 IPI:IPI00574618
Ensembl:ENSGALT00000003963 ArrayExpress:F1P555 Uniprot:F1P555
Length = 647
Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 34/108 (31%), Positives = 61/108 (56%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGF 104
G+ +N + + P + + +FVG L ++TDED ++ F++YGE V I GKG GF
Sbjct: 217 GFKANLSLLRRPGEKTYTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGF 276
Query: 105 VQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
++ +R AE A +L+ T + + +R+ + + A +LSP+ S+
Sbjct: 277 IKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSN 324
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 121 NGTVIGKQSVRLSWGRNPAN 140
NG + + +R+ +N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSN 87
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 130 (50.8 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 102 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 161
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTS 150
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+
Sbjct: 162 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTN 211
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 133 (51.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 47 ASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI 96
AS G G +SEG D+S +F+GGL + T +DL+ FS++GE+ ++K+
Sbjct: 19 ASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 78
Query: 97 -PV---GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLS 146
P+ +G GFV F E+ ++ + HKLNG VI + + + P K LS
Sbjct: 79 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLS 138
Query: 147 PFTSSTQFKK 156
P T + ++
Sbjct: 139 PDTPEEKIRE 148
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 131 (51.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 97 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 156
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 157 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 213
>UNIPROTKB|F8VZY7 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
Uniprot:F8VZY7
Length = 263
Score = 131 (51.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 214
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 38/108 (35%), Positives = 58/108 (53%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGFVQFANREN 112
E S++ IFVG L V DE L Q FS +G ++ ++ G+ G GFV F +R +
Sbjct: 170 EDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSD 229
Query: 113 AEEALHKLNGTVIGKQSVRLSWGRN---P--ANKQA-SLSPFTSSTQF 154
AE+AL ++G +G +++R +W P A +QA S T +T F
Sbjct: 230 AEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAMSAVGMTPTTPF 277
Score = 128 (50.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV 124
TT +VG L P T D+ F +G + + +G F++ + ENA +A+ LNG
Sbjct: 302 TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYN 361
Query: 125 IGKQSVRLSWGR--NPANKQASLSP 147
+ + ++ SWG+ N N Q + P
Sbjct: 362 VNGRPLKCSWGKDKNSTNPQGNFDP 386
Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-P----VGKGCGFVQFANRENAEE 115
+ + ++VGGLD VT++ LRQ F G + +VKI P G GFV++ + A+
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 140
Query: 116 ALHKLNGTVIGKQSVRLSWGRNPA 139
A+ LNG + + +R++W A
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQAA 164
>RGD|1311210 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C. elegans)
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005802 "trans-Golgi network" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 RGD:1311210 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS IPI:IPI00949707
ProteinModelPortal:D4A2J5 Ensembl:ENSRNOT00000065101
UCSC:RGD:1311210 ArrayExpress:D4A2J5 Uniprot:D4A2J5
Length = 367
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 39/118 (33%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 90 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 149
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+A ++P+T+ + +
Sbjct: 150 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKA-VNPYTNGWKLNPV 206
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 130 (50.8 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 13 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 72
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 73 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 132
Query: 156 K 156
+
Sbjct: 133 E 133
>FB|FBgn0027548 [details] [associations]
symbol:nito "spenito" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0048749 "compound eye
development" evidence=IMP] [GO:0030177 "positive regulation of Wnt
receptor signaling pathway" evidence=IGI] [GO:0035222 "wing disc
pattern formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 HSSP:P19339 GO:GO:0071011 GO:GO:0000398
InterPro:IPR012921 Pfam:PF07744 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 GeneTree:ENSGT00530000063730
EMBL:AF145664 RefSeq:NP_610339.1 RefSeq:NP_724633.1 UniGene:Dm.2130
SMR:Q7KMJ6 IntAct:Q7KMJ6 STRING:Q7KMJ6 EnsemblMetazoa:FBtr0088857
EnsemblMetazoa:FBtr0088858 GeneID:35756 KEGG:dme:Dmel_CG2910
UCSC:CG2910-RA CTD:35756 FlyBase:FBgn0027548 InParanoid:Q7KMJ6
OMA:CKVELSG OrthoDB:EOG4W3R31 GenomeRNAi:35756 NextBio:795063
Uniprot:Q7KMJ6
Length = 793
Score = 138 (53.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 36/109 (33%), Positives = 59/109 (54%)
Query: 57 QSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKG--CGFVQFANR 110
Q E D +T T+F G L+ + D++LR+ F +YG + + I P G G FV++ N
Sbjct: 305 QPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNL 364
Query: 111 ENAEEALHKLNGTVIGKQSVRLSWGR-NPANKQ--ASLSPFTSSTQFKK 156
+ A A +L+G IGK ++ +G+ PA + L +TS TQ ++
Sbjct: 365 DMAHRAKIELSGQYIGKFQCKIGYGKVTPATRMWIGGLGAWTSVTQLER 413
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 104
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 105 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQASLS 146
V A+R AE A N + G K +V L++ G P + Q +
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFA 123
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 129 (50.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 82
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 83 RIVGSKPLYVALAQRKEERKAHLT 106
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 132 (51.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 40/133 (30%), Positives = 67/133 (50%)
Query: 44 GGYASNGAPGQGPQSEG---DSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--S 93
GG A G G ++EG D+S +F+GGL + T +DL+ FS++G++ +
Sbjct: 47 GGSAPGGTEGGSTEAEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCT 106
Query: 94 VKI-PV---GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QA 143
+K+ P+ +G GFV F E+ ++ + HKLNG VI + + + P K
Sbjct: 107 LKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVG 166
Query: 144 SLSPFTSSTQFKK 156
LSP T + ++
Sbjct: 167 GLSPDTPEEKIRE 179
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 136 (52.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 54 QGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQF 107
QG G+ ++V LD VTDE LR+ F+++G I S K+ P G KG GFV F
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAF 375
Query: 108 ANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASL 145
+ A L+++NG ++G + + ++ + ++A L
Sbjct: 376 SAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 124 (48.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 44 GGYASNGAPGQGPQSEGDSSN----TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--- 96
G ++ PG G GD +++VG LD NVTD L F++ ++ SV++
Sbjct: 21 GAATASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRD 80
Query: 97 ---PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQAS 144
G G+V ++N ++AE+A+ KLN + + + +R+++ ++ + S
Sbjct: 81 AATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRS 131
Score = 111 (44.1 bits), Expect = 0.00020, P = 0.00020
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
+FV LD +V ++ L + FS G I S K+ +G GFVQF ++A+ A+ KLN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 122 GTVIGKQSV 130
G V+ + +
Sbjct: 196 GKVLNDKQI 204
Score = 109 (43.4 bits), Expect = 0.00042, P = 0.00042
Identities = 31/96 (32%), Positives = 47/96 (48%)
Query: 57 QSEGDSSN-TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVGKG---C-GFVQFANR 110
+S D T ++V L TD++L+ F QYG I+S V + G G C GFV F N
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENP 275
Query: 111 ENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLS 146
E+A A+ LNG + + + + ++ LS
Sbjct: 276 EDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS 311
>ZFIN|ZDB-GENE-030131-4817 [details] [associations]
symbol:wu:fd99c08 "wu:fd99c08" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046660 "female sex differentiation"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4817 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0046660 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:CABZ01087003 EMBL:CABZ01087004
EMBL:CABZ01087005 EMBL:CABZ01088109 EMBL:CU499333 IPI:IPI00900531
Ensembl:ENSDART00000112675 Bgee:E7FF46 Uniprot:E7FF46
Length = 1286
Score = 139 (54.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC ++ +R++A AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTG 535
Query: 123 TV-IGKQSVRLSWGRNPANKQ 142
+ IG + ++++W N KQ
Sbjct: 536 SYKIGSKVIKIAWALNKGVKQ 556
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 130 (50.8 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 156 K 156
+
Sbjct: 200 E 200
Score = 98 (39.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 120
IFVGGL P+ +E +R+ F +GE+ S+++P+ +G F+ F E ++ + K
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Query: 121 NGTV-IGKQSVRLSWGRNPANKQ 142
V + K ++++ + +Q
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQ 266
Score = 42 (19.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 44 GGYASNGAPGQGPQSEG 60
GG A+ G G +SEG
Sbjct: 49 GGTAAGGTEGSSAESEG 65
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 122 GTVIGKQSVRLS--WGRNPANKQASLSPFTS 150
G ++ + V + R + A+ + FT+
Sbjct: 186 GMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 32/89 (35%), Positives = 54/89 (60%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 116
SSN ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA
Sbjct: 317 SSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEA 374
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQASL 145
+ +L+G +I + + ++ + +++ L
Sbjct: 375 MSQLSGKMIESKPLYVAIAQRKEDRRVRL 403
Score = 117 (46.2 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 34/123 (27%), Positives = 61/123 (49%)
Query: 47 ASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGK-- 100
A AP G + NT+++VG LD NVTD L F Q G + +V++ V +
Sbjct: 17 AVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRS 76
Query: 101 -GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIE 158
G G+V F N ++A A+ +LN + + +R+ + R+P+ +++ + I+
Sbjct: 77 LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESID 136
Query: 159 YNA 161
+ A
Sbjct: 137 HKA 139
Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG----KGCGFVQFANRENAEEALHK 119
T ++V L + TD+DL+ F +YG+I S V + G KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 120 LNG 122
LNG
Sbjct: 275 LNG 277
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 130 (50.8 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 39/125 (31%), Positives = 64/125 (51%)
Query: 49 NGAPGQGPQSEGDSSNTT-----IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV-- 98
NG G+ S+ D+S +FVGGL + T +DL+ F+++GE+ ++K+ P+
Sbjct: 33 NGGQGEAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTG 92
Query: 99 -GKGCGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSS 151
+G GFV F E+ E+ + HKLNG VI + + + P K LSP T
Sbjct: 93 RSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPE 152
Query: 152 TQFKK 156
+ ++
Sbjct: 153 EKIRE 157
>WB|WBGene00006331 [details] [associations]
symbol:sup-26 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003730
EMBL:Z50874 GeneTree:ENSGT00630000089747 GeneID:175551
KEGG:cel:CELE_R10E4.2 CTD:175551 RefSeq:NP_001254892.1
ProteinModelPortal:D5MCR3 SMR:D5MCR3 EnsemblMetazoa:R10E4.2q
WormBase:R10E4.2q ArrayExpress:D5MCR3 Uniprot:D5MCR3
Length = 476
Score = 133 (51.9 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 42/126 (33%), Positives = 61/126 (48%)
Query: 45 GYASNGAPGQGPQSEGDS---SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
GY AP +G Q DS S+T +++ GL PN D+ LR+ S+YG IAS K + K
Sbjct: 126 GYGRYTAP-RGDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKA 184
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQF 154
G GFV F + + A A+ LN + Q +L ++P N + P + Q
Sbjct: 185 TNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFTEQM 244
Query: 155 KKIEYN 160
+ E N
Sbjct: 245 LETELN 250
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 115
S +FVGGL + ++ L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 116 ALHKLNGTV---IGKQSVRLSWGRNPANKQASLSP 147
A+ +NG V + +S G PAN LSP
Sbjct: 63 AMMAMNGKVRIRVLSRSPVSRMGHPPANPSRPLSP 97
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 132 (51.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GC 102
N A G Q E SS+ IFVG L P VTD L FS Y + ++ G+ G
Sbjct: 124 NWAYASG-QREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGF 182
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA----NKQAS 144
GFV F N+++A+ A+ ++ G +G + +R +W A +KQ+S
Sbjct: 183 GFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSS 228
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/110 (28%), Positives = 52/110 (47%)
Query: 42 LIGGYASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPV 98
L G + +G G E ++ TT++VG L P V+ DL + F G I V++
Sbjct: 236 LTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQR 295
Query: 99 GKGCGFVQFANRENAEEALHKLNG-TVIGKQSVRLSWGRNPANKQASLSP 147
KG GFV+++ A A+ N + + + ++ SWG P + +P
Sbjct: 296 DKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNP 345
>UNIPROTKB|D4A288 [details] [associations]
symbol:D4A288 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG469QV2
IPI:IPI00358787 ProteinModelPortal:D4A288
Ensembl:ENSRNOT00000039637 Uniprot:D4A288
Length = 291
Score = 129 (50.5 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 49 NGAPGQGPQSEGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------G 101
NGAP S D S T +++ GL P++TD+DL + YG+I S K + K G
Sbjct: 8 NGAPNSSRSSGNDQMSKTNLYIRGLQPSITDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 67
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQ 153
GFV F + +A +A+ L + + Q + ++PAN S P + Q
Sbjct: 68 YGFVDFDSPSSAHKAVTALKASGMQAQMAKQQ-EQDPANLYISNLPLSMDEQ 118
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 125 (49.1 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 123 TVIGKQSVRLSWGR 136
++G + + ++ G+
Sbjct: 200 RIVGSKPLHVTLGQ 213
>UNIPROTKB|F1Q2X1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 EMBL:AAEX03004562 EMBL:AAEX03004563 EMBL:AAEX03004564
GeneID:609116 KEGG:cfa:609116 RefSeq:XP_863775.1
Ensembl:ENSCAFT00000030298 Uniprot:F1Q2X1
Length = 395
Score = 131 (51.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 177
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 178 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 234
>MGI|MGI:1926224 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C.
elegans) 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005802 "trans-Golgi network" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1926224 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 Reactome:REACT_24972 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ OrthoDB:EOG4NVZKS
ChiTaRS:RBFOX1 EMBL:AF107204 EMBL:AY659954 EMBL:AY659955
EMBL:AY659956 EMBL:AY659957 EMBL:AY659958 EMBL:AF191501
EMBL:AB041596 EMBL:AK134833 EMBL:BC059002 IPI:IPI00121045
IPI:IPI00605392 IPI:IPI00606138 IPI:IPI00607041 IPI:IPI00885248
IPI:IPI00886040 IPI:IPI00886174 RefSeq:NP_067452.2
RefSeq:NP_899011.2 UniGene:Mm.370334 ProteinModelPortal:Q9JJ43
SMR:Q9JJ43 STRING:Q9JJ43 PhosphoSite:Q9JJ43 PaxDb:Q9JJ43
PRIDE:Q9JJ43 Ensembl:ENSMUST00000056416 Ensembl:ENSMUST00000115841
GeneID:268859 KEGG:mmu:268859 UCSC:uc007ycb.2 UCSC:uc007ycc.2
UCSC:uc007ycf.2 UCSC:uc007ycg.2 UCSC:uc007ych.2 UCSC:uc007yci.2
NextBio:392539 Bgee:Q9JJ43 CleanEx:MM_A2BP1 Genevestigator:Q9JJ43
GermOnline:ENSMUSG00000008658 Uniprot:Q9JJ43
Length = 396
Score = 131 (51.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 97 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 156
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 157 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 213
>UNIPROTKB|Q9NWB1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0050658 "RNA transport" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005802 GO:GO:0043484
GO:GO:0050658 eggNOG:NOG258617 KO:K14946 CTD:54715
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ
EMBL:AF107203 EMBL:AF229057 EMBL:AF094849 EMBL:AF109106
EMBL:AF109120 EMBL:AF109107 EMBL:AF109108 EMBL:AF109109
EMBL:AF109110 EMBL:AF109111 EMBL:AF109112 EMBL:AF109113
EMBL:AF109114 EMBL:AF109115 EMBL:AF109116 EMBL:AF109117
EMBL:AF109118 EMBL:AF109119 EMBL:AF448859 EMBL:AK001027
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 EMBL:BC113691 IPI:IPI00152050
IPI:IPI00170678 IPI:IPI00170712 IPI:IPI01021020 IPI:IPI01022902
RefSeq:NP_001135805.1 RefSeq:NP_001135806.1 RefSeq:NP_061193.2
RefSeq:NP_665898.1 RefSeq:NP_665899.1 RefSeq:NP_665900.1
UniGene:Hs.459842 PDB:2ERR PDBsum:2ERR ProteinModelPortal:Q9NWB1
SMR:Q9NWB1 IntAct:Q9NWB1 MINT:MINT-2854938 STRING:Q9NWB1
PhosphoSite:Q9NWB1 DMDM:166897979 PaxDb:Q9NWB1 PRIDE:Q9NWB1
Ensembl:ENST00000311745 Ensembl:ENST00000355637
Ensembl:ENST00000436368 Ensembl:ENST00000547338
Ensembl:ENST00000550418 Ensembl:ENST00000553186 GeneID:54715
KEGG:hsa:54715 UCSC:uc002cys.2 UCSC:uc002cyt.2 UCSC:uc002cyw.2
UCSC:uc002cyx.2 UCSC:uc002cyy.2 GeneCards:GC16P006033
HGNC:HGNC:18222 HPA:HPA040809 MIM:605104 neXtProt:NX_Q9NWB1
ChiTaRS:RBFOX1 EvolutionaryTrace:Q9NWB1 GenomeRNAi:54715
NextBio:57277 ArrayExpress:Q9NWB1 Bgee:Q9NWB1 Genevestigator:Q9NWB1
GermOnline:ENSG00000078328 Uniprot:Q9NWB1
Length = 397
Score = 131 (51.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 157
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 214
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 128 (50.1 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 44/125 (35%), Positives = 59/125 (47%)
Query: 52 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQ 106
P GP+ G IFVGG+D + DLR+ FSQYG + VKI V KG GF+
Sbjct: 21 PTSGPRY-GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFIT 79
Query: 107 FANRENAEEALH----------KLN-GTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFK 155
F +E+A++ L KLN G I KQ V + R+ A T+ST +
Sbjct: 80 FETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIP--RSSLMPAAGTMYLTTSTGYP 137
Query: 156 KIEYN 160
+N
Sbjct: 138 YTYHN 142
>UNIPROTKB|J3KNW3 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 ProteinModelPortal:J3KNW3 Ensembl:ENST00000340209
Uniprot:J3KNW3
Length = 402
Score = 131 (51.2 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 103 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 162
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 163 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 219
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 130 (50.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 156 K 156
+
Sbjct: 200 E 200
Score = 98 (39.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 120
IFVGGL P+ +E +R+ F +GE+ S+++P+ +G F+ F E ++ + K
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Query: 121 NGTV-IGKQSVRLSWGRNPANKQ 142
V + K ++++ + +Q
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQ 266
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 44 GGYASNGAPGQGPQSEG 60
GG AS G G +SEG
Sbjct: 49 GGTASGGTEGGSAESEG 65
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 130 (50.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 156 K 156
+
Sbjct: 200 E 200
Score = 98 (39.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 120
IFVGGL P+ +E +R+ F +GE+ S+++P+ +G F+ F E ++ + K
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Query: 121 NGTV-IGKQSVRLSWGRNPANKQ 142
V + K ++++ + +Q
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQ 266
Score = 42 (19.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 44 GGYASNGAPGQGPQSEG 60
GG A+ G G +SEG
Sbjct: 49 GGTAAGGTEGSSAESEG 65
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 130 (50.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 156 K 156
+
Sbjct: 200 E 200
Score = 98 (39.6 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKL 120
IFVGGL P+ +E +R+ F +GE+ S+++P+ +G F+ F E ++ + K
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 243
Query: 121 NGTV-IGKQSVRLSWGRNPANKQ 142
V + K ++++ + +Q
Sbjct: 244 YHNVGLSKCEIKVAMSKEQYQQQ 266
Score = 40 (19.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 44 GGYASNGAPGQGPQSEG 60
GG A+ G G +SEG
Sbjct: 49 GGTAAGGTEGGSAESEG 65
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 126 (49.4 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 104
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 105 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQASLS 146
V A+R AE A N + G K +V L++ G P + Q +
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFA 123
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 126 (49.4 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 104
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 105 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQASLS 146
V A+R AE A N + G K +V L++ G P + Q +
Sbjct: 80 VTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFA 123
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 131 (51.2 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 33/79 (41%), Positives = 42/79 (53%)
Query: 58 SEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN 109
S GD+ N T IFVGGL P +TDE+ RQ F YG + V I +G GFV F +
Sbjct: 101 SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 110 RENAEEALHKLNGTVIGKQ 128
+ + LHK + GKQ
Sbjct: 161 EDAVDSVLHKTFHDLSGKQ 179
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 163
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 164 MNGKEISGKIIFVGRAQKKVERQAEL 189
>UNIPROTKB|H0YKS1 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC066612 EMBL:AC090526 HGNC:HGNC:17940
Ensembl:ENST00000560172 Uniprot:H0YKS1
Length = 126
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI--ASVKIPVGK-- 100
G+ S G G G + S IFV L ++T + L++ FSQ G + A +K+ GK
Sbjct: 30 GFLS-GPMGSGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSK 88
Query: 101 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137
GCG V+F + E+AE+A +NG I + + + RN
Sbjct: 89 GCGTVRFDSPESAEKACRIMNGIKISGREIDVRLDRN 125
>UNIPROTKB|F1Q2W1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 OMA:PPDTMAQ EMBL:AAEX03004562 EMBL:AAEX03004563
EMBL:AAEX03004564 RefSeq:XP_851461.1 ProteinModelPortal:F1Q2W1
Ensembl:ENSCAFT00000030301 GeneID:609116 KEGG:cfa:609116
Uniprot:F1Q2W1
Length = 418
Score = 131 (51.2 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 177
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 178 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 234
>UNIPROTKB|B7Z1U7 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC005774 EMBL:AC006075
EMBL:AC006112 EMBL:AC007012 EMBL:AC007217 EMBL:AC007222
EMBL:AC007223 EMBL:AC009135 EMBL:AC022206 EMBL:AC023829
EMBL:AC027683 EMBL:AC079410 EMBL:AC125796 EMBL:AC131390
UniGene:Hs.459842 HGNC:HGNC:18222 ChiTaRS:RBFOX1 EMBL:AK293951
IPI:IPI00910807 SMR:B7Z1U7 STRING:B7Z1U7 Ensembl:ENST00000422070
UCSC:uc010uxz.1 Uniprot:B7Z1U7
Length = 425
Score = 131 (51.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 141 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 200
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 201 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 257
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 128 (50.1 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 44/125 (35%), Positives = 59/125 (47%)
Query: 52 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQ 106
P GP+ G IFVGG+D + DLR+ FSQYG + VKI V KG GF+
Sbjct: 33 PTSGPRY-GTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFIT 91
Query: 107 FANRENAEEALH----------KLN-GTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFK 155
F +E+A++ L KLN G I KQ V + R+ A T+ST +
Sbjct: 92 FETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIP--RSSIMPAAGTMYLTTSTGYP 149
Query: 156 KIEYN 160
+N
Sbjct: 150 YTYHN 154
>UNIPROTKB|E1C0S2 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 IPI:IPI00584056
EMBL:AADN02005081 EMBL:AADN02005082 EMBL:AADN02005083
EMBL:AADN02005084 Ensembl:ENSGALT00000027687 ArrayExpress:E1C0S2
Uniprot:E1C0S2
Length = 523
Score = 132 (51.5 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 32/109 (29%), Positives = 59/109 (54%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GG+ + P + + +FVG L ++T+ED ++ F +YGE + V I +G G
Sbjct: 60 GGFTIDIKSFLKPGEKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 119
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
F++ +R AE A +L+GT++ + +R+ + + A +LSP S+
Sbjct: 120 FIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSN 168
>UNIPROTKB|Q5ZK88 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OrthoDB:EOG444KKN EMBL:AJ720196
IPI:IPI00584056 RefSeq:NP_001026002.1 UniGene:Gga.4178 HSSP:Q99K48
ProteinModelPortal:Q5ZK88 SMR:Q5ZK88 PRIDE:Q5ZK88 GeneID:418955
KEGG:gga:418955 InParanoid:Q5ZK88 NextBio:20822076 Uniprot:Q5ZK88
Length = 523
Score = 132 (51.5 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 32/109 (29%), Positives = 59/109 (54%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GG+ + P + + +FVG L ++T+ED ++ F +YGE + V I +G G
Sbjct: 60 GGFTIDIKSFLKPGEKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 119
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
F++ +R AE A +L+GT++ + +R+ + + A +LSP S+
Sbjct: 120 FIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSN 168
>UNIPROTKB|F1N941 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:DNREQEM EMBL:AADN02005081
EMBL:AADN02005082 EMBL:AADN02005083 EMBL:AADN02005084
IPI:IPI00819057 Ensembl:ENSGALT00000036438 ArrayExpress:F1N941
Uniprot:F1N941
Length = 524
Score = 132 (51.5 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 32/109 (29%), Positives = 59/109 (54%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GG+ + P + + +FVG L ++T+ED ++ F +YGE + V I +G G
Sbjct: 60 GGFTIDIKSFLKPGEKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFG 119
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
F++ +R AE A +L+GT++ + +R+ + + A +LSP S+
Sbjct: 120 FIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSN 168
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 132 (51.5 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PV---GKGCGFVQFANRENAEEALHKL 120
IFVG L + + L+ F+ +GEI+ ++ P KG GFV F + AE A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLS--PFT 149
NG +G +S+R +W R P +A ++ P T
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLT 189
Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 26/83 (31%), Positives = 50/83 (60%)
Query: 58 SEGDSSNTTIFVGGLDPNVT----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
++ +N T++ GG++ ++ +E L++ FS YG I +++ KG FV+F+ +E A
Sbjct: 195 NQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAA 254
Query: 114 EEALHKLNGTVIGKQSVRLSWGR 136
A+ +N T I +Q V+ +WG+
Sbjct: 255 THAIVAVNNTEINQQPVKCAWGK 277
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 128 (50.1 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
IFVGGL P VTD DL + FS++G+I +I + +G GF+ FA+R +E++ ++
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 121 NGTVIGKQSVRLS 133
+G G + + ++
Sbjct: 69 HGRDFGDRVISVN 81
>UNIPROTKB|F8VZG9 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 IPI:IPI01022127 ProteinModelPortal:F8VZG9 SMR:F8VZG9
Ensembl:ENST00000547372 ArrayExpress:F8VZG9 Bgee:F8VZG9
Uniprot:F8VZG9
Length = 466
Score = 131 (51.2 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 48 SNGAPGQGPQ--SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KG 101
++G P P +E S + V + D DLRQ F Q+G+I V+I KG
Sbjct: 141 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG 200
Query: 102 CGFVQFANRENAEEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
GFV F N +A+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 201 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 257
>UNIPROTKB|E1C9H9 [details] [associations]
symbol:MANF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 OMA:KRDSERN GeneTree:ENSGT00530000063730
EMBL:AADN02056521 IPI:IPI00572917 ProteinModelPortal:E1C9H9
Ensembl:ENSGALT00000003739 Uniprot:E1C9H9
Length = 557
Score = 132 (51.5 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 35/101 (34%), Positives = 56/101 (55%)
Query: 59 EGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV-GKG--CGFVQFANREN 112
E D T +F+G LD NV++ +LR+ F +YG I V I P G+G F++F N +
Sbjct: 3 EDDQRATRNLFIGNLDHNVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDM 62
Query: 113 AEEALHKLNGTVIGKQSVRLSWGR-NPANKQ--ASLSPFTS 150
A A ++G V+G+ +++ +G+ NP + L P TS
Sbjct: 63 AHRAKVAMSGRVVGRNPIKIGYGKANPTTRLWVGGLGPSTS 103
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 51 APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK--GCGF 104
APG S+ D++ T IFVGGL + TD LR+ F +G+I + GK G GF
Sbjct: 20 APGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 79
Query: 105 VQFANRENAEEALHKLNGTVIG-KQSVRLSW-GRNPANKQASLS 146
V A+R AE A N + G K +V L++ G P + Q +
Sbjct: 80 VTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFA 123
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVG L P+ DE L++ FS+Y ++ V +P+ KG GFV F E+ A ++
Sbjct: 58 LFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEM 117
Query: 121 NGTVIGKQSVRLSWGRNPANKQ 142
NG IG+ V+L + K+
Sbjct: 118 NGKYIGQHPVQLKRAESSVPKK 139
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVG L P+ DE L++ FS+Y ++ V +P+ KG GFV F E+ A ++
Sbjct: 58 LFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEM 117
Query: 121 NGTVIGKQSVRLSWGRNPANKQ 142
NG IG+ V+L + K+
Sbjct: 118 NGKYIGQHPVQLKRAESSVPKK 139
>ZFIN|ZDB-GENE-041008-192 [details] [associations]
symbol:rbm15 "RNA binding motif protein 15"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041008-192 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
OMA:DYLVMIV EMBL:BX324132 IPI:IPI00902274
Ensembl:ENSDART00000111617 Bgee:F1RCY7 Uniprot:F1RCY7
Length = 855
Score = 134 (52.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 34/103 (33%), Positives = 56/103 (54%)
Query: 59 EGDS-SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI--PV-GKGC--GFVQFANREN 112
E D +N T+F+G LD VT+ DLR+ F ++G I V I P G+ GF++F N +
Sbjct: 302 EDDQRANRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDM 361
Query: 113 AEEALHKLNGTVIGKQSVRLSWGR-NPANKQ--ASLSPFTSST 152
A A ++G V+G+ +++ +G+ P + L P+ T
Sbjct: 362 AHRAKISMSGKVVGRNPIKIGYGKATPTTRLWVGGLGPWVPLT 404
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 133 (51.9 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 52 PGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRE 111
P + P + S ++V L +V+++ L++ F QYG++ VK + K F+ F +R+
Sbjct: 327 PQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVK-KI-KDYAFIHFEDRD 384
Query: 112 NAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
+A EA+ LNG IG ++ +S + P++K+
Sbjct: 385 SAVEAMRGLNGKEIGASNIEVSLAKPPSDKK 415
>ZFIN|ZDB-GENE-030131-9530 [details] [associations]
symbol:pspc1 "paraspeckle component 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9530 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN EMBL:BC116549 IPI:IPI00650514
RefSeq:NP_001038723.1 UniGene:Dr.75397 ProteinModelPortal:Q1JPY8
SMR:Q1JPY8 STRING:Q1JPY8 Ensembl:ENSDART00000102335 GeneID:692285
KEGG:dre:692285 InParanoid:Q1JPY8 NextBio:20902486
ArrayExpress:Q1JPY8 Bgee:Q1JPY8 Uniprot:Q1JPY8
Length = 512
Score = 131 (51.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 30/86 (34%), Positives = 50/86 (58%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126
+FVG L ++ DED ++ F +YG+ V I +G GF++ R AE A +L+GTV+G
Sbjct: 78 LFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDRGFGFIRLETRTLAEIAKAELDGTVLG 137
Query: 127 KQSVRLSWGRNPANKQA-SLSPFTSS 151
+ +R+ + + A +LSP S+
Sbjct: 138 NRPIRIRFATHGAALTVRNLSPVVSN 163
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 129 (50.5 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A++++NG
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNG 363
Query: 123 TVIGKQSVRLSWGR 136
V+G +++ ++ G+
Sbjct: 364 RVVGSKTLHVTLGQ 377
Score = 105 (42.0 bits), Expect = 0.00071, P = 0.00071
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +FV ++ DE L++ FS+YG SVK+ GK G GFV++ E A++A+ +
Sbjct: 199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLE 258
Query: 120 LNGTVI-GK 127
L+G I GK
Sbjct: 259 LHGKSIDGK 267
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++GE+ ++K+ P+ +G
Sbjct: 80 SNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
Query: 156 K 156
+
Sbjct: 200 E 200
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 188
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++ + + ++ + +QA L+
Sbjct: 189 RIVATKPLYVALAQRKEERQAHLT 212
Score = 103 (41.3 bits), Expect = 0.00067, P = 0.00067
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 119
T +++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ +
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG + + + + + +Q L
Sbjct: 84 MNGKELNGKQIYVGRAQKKVERQTEL 109
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/108 (28%), Positives = 50/108 (46%)
Query: 46 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------G 99
+ S A Q P +T +FV GL T E LR F+Q+GE+A K+
Sbjct: 37 FLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYS 96
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSP 147
KG GFV++A E++ + + ++G + + + R P + S P
Sbjct: 97 KGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR-PREQSQSYQP 143
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQ 106
G P D T+F+G L N + + + F+++GE+ SV+IP KG G+VQ
Sbjct: 259 GDTPSEPSD----TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 314
Query: 107 FANRENAEEALHKLNGTVIGKQSVRLSWGR-NPAN 140
F+N E+A++AL L G I + VRL + P N
Sbjct: 315 FSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 349
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 51 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 110
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 111 RIVGSKPLYVALAQRKEERKAHLT 134
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NT ++V L N+T ++LR F +GEI + V G + FA R AE+A++++
Sbjct: 185 DPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEM 242
Query: 121 NGTVIGKQSVRLSWGRNPANKQASLSPFTSST 152
N + ++LSW R P+ +L P ST
Sbjct: 243 NNFPLHGVRIQLSWARPPS---MALLPSKQST 271
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 135 (52.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 477 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSG 536
Query: 123 TV-IGKQSVRLSWGRNPANK 141
+ IG + ++++W N K
Sbjct: 537 SYKIGSKIIKIAWALNKGVK 556
>FB|FBgn0034598 [details] [associations]
symbol:CG4266 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K13191 GeneTree:ENSGT00530000063946 RefSeq:NP_001097394.1
UniGene:Dm.4151 ProteinModelPortal:A8DYK5 SMR:A8DYK5 STRING:A8DYK5
EnsemblMetazoa:FBtr0113100 GeneID:37411 KEGG:dme:Dmel_CG4266
UCSC:CG4266-RB FlyBase:FBgn0034598 OMA:RAITISW OrthoDB:EOG4NK99F
PhylomeDB:A8DYK5 GenomeRNAi:37411 NextBio:803495 Bgee:A8DYK5
Uniprot:A8DYK5
Length = 1306
Score = 123 (48.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 123
+TT++VG L V E+L F +YG+I S+ V +GC F+ R++A +A+ L
Sbjct: 491 STTLWVGHLSKLVYQEELSDTFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNH 550
Query: 124 VIGKQSVRLSW--GRNPANKQ 142
+ +++ +SW G+ +K+
Sbjct: 551 KLQGRAITISWAAGKGVKSKE 571
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 43 IGGYASNGAP-GQGPQSEGDSSNTTIFVG 70
+GG G G GP S G S I G
Sbjct: 148 VGGSGGQGGGVGPGPSSSGALSLADISSG 176
>ZFIN|ZDB-GENE-040718-69 [details] [associations]
symbol:nelfe "negative elongation factor complex
member E" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040718-69 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089917
EMBL:FP102194 IPI:IPI00934333 Ensembl:ENSDART00000113250
ArrayExpress:F1QK79 Bgee:F1QK79 Uniprot:F1QK79
Length = 378
Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEE 115
P+ G T++V G + ++ LR F+Q+G I + + + C FV F E+A++
Sbjct: 259 PERRGVRKGNTVYVYGT--GLVEDSLRTAFAQHGNIIDLSMDSPRNCAFVTFEKIESADQ 316
Query: 116 ALHKLNGTVIGKQSVRLSWGR 136
A+ +LNGT +G ++++S R
Sbjct: 317 AVAELNGTTVGDVNIKVSIAR 337
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 54 QGPQSEG-DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFA 108
Q PQ ++V LD + DE LR+ FS +G I S K+ + KG GFV F+
Sbjct: 292 QVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFS 351
Query: 109 NRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLS 146
+ E A +A+ ++NG ++ + + ++ + +QA LS
Sbjct: 352 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLS 389
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
IFV LD ++ + L FS +G I S K+ KG GFV F +E AE A+ K+NG
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
+ + V + ++ ++QA L
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQAEL 183
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGKGCGF--VQFANRE 111
S+ S +++VG L P+VT+ L + FS G I S+++ + G+ V F E
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLE 63
Query: 112 NAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASL 145
+AE AL +N VI + VR+ W R+P+ +++ +
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGV 98
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 30/101 (29%), Positives = 50/101 (49%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 119
T +++ L ++ DE L+ FS++G SVK+ KG GFV F E+A +A+ +
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASLS-PFTSSTQFK-KIE 158
+NG + + + + + +Q L F Q K KIE
Sbjct: 251 MNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIE 291
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKGCGFVQFANRENAEEAL--- 117
+F+GGL + T +DL+ FS++GE+ ++K+ P+ +G GFV F E+ ++ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 118 -HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFKK 156
HKLNG VI + + + P K LSP T + ++
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIRE 102
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEE 115
S +F+GGL+ + +E L Q FS+YG+I+ V + +G GFV F N ++A++
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 116 ALHKLNGTVIGKQSVRLSW-GRNPANKQ 142
A+ +NG + + +R+ G++ +++
Sbjct: 62 AMMAMNGKAVDGRQIRVDQAGKSSGDRR 89
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 224
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++ + + ++ + +QA L+
Sbjct: 225 RIVATKPLYVALAQRKEERQAHLT 248
>UNIPROTKB|F1PC86 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
CTD:22828 KO:K13191 GeneTree:ENSGT00530000063946 OMA:YRFPPIE
EMBL:AAEX03000284 RefSeq:XP_533458.3 Ensembl:ENSCAFT00000000878
GeneID:476252 KEGG:cfa:476252 Uniprot:F1PC86
Length = 1267
Score = 134 (52.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 472 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 531
Query: 123 TV-IGKQSVRLSWGRNPANK 141
+ IG + ++++W N K
Sbjct: 532 SYKIGSKVIKIAWALNKGVK 551
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 134 (52.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 123 TV-IGKQSVRLSWGRNPANK 141
+ IG + ++++W N K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>UNIPROTKB|Q9UPN6 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006366 GO:GO:0016363
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 EMBL:AB029039 EMBL:AL121952
EMBL:AL136976 EMBL:AL591499 EMBL:BC070071 IPI:IPI01012434
RefSeq:NP_055707.3 UniGene:Hs.591329 PDB:2DIW PDB:3D9I PDB:3D9J
PDB:3D9K PDB:3D9L PDB:3D9M PDB:3D9N PDB:3D9O PDB:3D9P PDBsum:2DIW
PDBsum:3D9I PDBsum:3D9J PDBsum:3D9K PDBsum:3D9L PDBsum:3D9M
PDBsum:3D9N PDBsum:3D9O PDBsum:3D9P ProteinModelPortal:Q9UPN6
SMR:Q9UPN6 STRING:Q9UPN6 PhosphoSite:Q9UPN6 DMDM:30580495
PaxDb:Q9UPN6 PRIDE:Q9UPN6 Ensembl:ENST00000367178
Ensembl:ENST00000417268 GeneID:22828 KEGG:hsa:22828 UCSC:uc003qpz.3
CTD:22828 GeneCards:GC06P155055 HGNC:HGNC:20959 HPA:HPA035602
neXtProt:NX_Q9UPN6 PharmGKB:PA128394587 HOVERGEN:HBG055796
InParanoid:Q9UPN6 KO:K13191 OrthoDB:EOG45MN4V PhylomeDB:Q9UPN6
ChiTaRS:SCAF8 EvolutionaryTrace:Q9UPN6 GenomeRNAi:22828
NextBio:43242 ArrayExpress:Q9UPN6 Bgee:Q9UPN6 CleanEx:HS_RBM16
Genevestigator:Q9UPN6 GermOnline:ENSG00000146426 Uniprot:Q9UPN6
Length = 1271
Score = 134 (52.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 476 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 535
Query: 123 TV-IGKQSVRLSWGRNPANK 141
+ IG + ++++W N K
Sbjct: 536 SYKIGSKVIKIAWALNKGVK 555
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 48 SNGAPGQGPQS-EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------ 100
SNG + GD T + V L N+T ++LR FS GE+ S K+ K
Sbjct: 2 SNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 101 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141
G GFV + ++AE A++ LNG + +++++S+ R P+++
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSE 101
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV----------KIPV 98
N A G Q E SS+ IFVG L P VTD L FS + +S K
Sbjct: 133 NWAYATG-QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGR 191
Query: 99 GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139
+G GFV F N+++A+ A++++NG + + +R +W A
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 232
Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVGKGCGFVQFANRENAEEA 116
E + TT++VG L P VT DL + F G I V++ KG GFV++ + A A
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALA 326
Query: 117 LHKLNGT-VIGKQSVRLSWGRNPANKQASLSP 147
+ N + + +R SWG P + +P
Sbjct: 327 IQMGNAQPFLFSRQIRCSWGNKPTPSGTASNP 358
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
I++ LD + DE L++ FS +G I+ K+ V GKG G + F++ E A +A+ ++NG
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNG 363
Query: 123 TVIGKQSVRLSWGR 136
++G + ++++ G+
Sbjct: 364 RIVGSKPLQVTLGQ 377
>UNIPROTKB|B7Z888 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:AL121952 EMBL:AL136976 EMBL:AL591499
UniGene:Hs.591329 HGNC:HGNC:20959 HOVERGEN:HBG055796 ChiTaRS:SCAF8
OMA:YRFPPIE HOGENOM:HOG000154078 EMBL:AK303001 IPI:IPI00871240
SMR:B7Z888 STRING:B7Z888 Ensembl:ENST00000367186 UCSC:uc010kji.3
Uniprot:B7Z888
Length = 1337
Score = 134 (52.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 542 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 601
Query: 123 TV-IGKQSVRLSWGRNPANK 141
+ IG + ++++W N K
Sbjct: 602 SYKIGSKVIKIAWALNKGVK 621
>UNIPROTKB|F1SB23 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:CU633674
EMBL:FP565558 Ensembl:ENSSSCT00000004499 Uniprot:F1SB23
Length = 1347
Score = 134 (52.2 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN-G 122
+TT++VG +D T +DL F ++G+I S+ + +GC +V +R++A AL KL+ G
Sbjct: 554 STTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSG 613
Query: 123 TV-IGKQSVRLSWGRNPANK 141
+ IG + ++++W N K
Sbjct: 614 SYKIGSKVIKIAWALNKGVK 633
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
++V LD ++ DE LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILT 379
>RGD|1310122 [details] [associations]
symbol:Pspc1 "paraspeckle component 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310122 GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
eggNOG:NOG298586 GeneTree:ENSGT00390000005004 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM OrthoDB:EOG444KKN
HSSP:Q99K48 EMBL:BC099204 IPI:IPI00203753 RefSeq:NP_001020843.1
UniGene:Rn.140724 ProteinModelPortal:Q4KLH4 SMR:Q4KLH4
STRING:Q4KLH4 PhosphoSite:Q4KLH4 Ensembl:ENSRNOT00000028219
GeneID:305910 KEGG:rno:305910 UCSC:RGD:1310122 InParanoid:Q4KLH4
NextBio:655234 Genevestigator:Q4KLH4 Uniprot:Q4KLH4
Length = 522
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126
+FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+GT++
Sbjct: 83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 142
Query: 127 KQSVRLSWGRNPANKQA-SLSPFTSS 151
+ +R+ + + A +LSP S+
Sbjct: 143 SRPLRIRFATHGAALTVKNLSPVVSN 168
>UNIPROTKB|Q8WXF1 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 EMBL:CH471075
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 EMBL:AL354808
eggNOG:NOG298586 PDB:3SDE PDBsum:3SDE HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM OrthoDB:EOG444KKN
EMBL:AF448795 EMBL:AF449627 EMBL:AK001817 EMBL:BC014184
EMBL:CR457272 EMBL:AL834505 IPI:IPI00103525 IPI:IPI00395775
RefSeq:NP_001035879.1 UniGene:Hs.213198 ProteinModelPortal:Q8WXF1
SMR:Q8WXF1 IntAct:Q8WXF1 MINT:MINT-1395719 STRING:Q8WXF1
PhosphoSite:Q8WXF1 DMDM:74762636 PaxDb:Q8WXF1 PRIDE:Q8WXF1
DNASU:55269 Ensembl:ENST00000338910 Ensembl:ENST00000427943
Ensembl:ENST00000471658 Ensembl:ENST00000492741 GeneID:55269
KEGG:hsa:55269 UCSC:uc021rgx.1 GeneCards:GC13M020249
H-InvDB:HIX0011177 HGNC:HGNC:20320 HPA:HPA038904 MIM:612408
neXtProt:NX_Q8WXF1 PharmGKB:PA134968603 InParanoid:Q8WXF1
PhylomeDB:Q8WXF1 ChiTaRS:PSPC1 GenomeRNAi:55269 NextBio:59380
ArrayExpress:Q8WXF1 Bgee:Q8WXF1 CleanEx:HS_PSPC1
Genevestigator:Q8WXF1 Uniprot:Q8WXF1
Length = 523
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126
+FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+GT++
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 143
Query: 127 KQSVRLSWGRNPANKQA-SLSPFTSS 151
+ +R+ + + A +LSP S+
Sbjct: 144 SRPLRIRFATHGAALTVKNLSPVVSN 169
>MGI|MGI:1913895 [details] [associations]
symbol:Pspc1 "paraspeckle protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1913895 GO:GO:0005737 GO:GO:0005730 GO:GO:0006355
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN HSSP:Q99K48 ChiTaRS:PSPC1 EMBL:AK011272
EMBL:AK017689 EMBL:AK150823 EMBL:AK160722 EMBL:BC026772
IPI:IPI00321266 IPI:IPI00857897 RefSeq:NP_079958.3 UniGene:Mm.20129
ProteinModelPortal:Q8R326 SMR:Q8R326 IntAct:Q8R326 MINT:MINT-218330
STRING:Q8R326 PhosphoSite:Q8R326 PaxDb:Q8R326 PRIDE:Q8R326
Ensembl:ENSMUST00000022507 Ensembl:ENSMUST00000163924 GeneID:66645
KEGG:mmu:66645 UCSC:uc007ucj.1 UCSC:uc007uck.1 InParanoid:Q8R326
NextBio:322261 Bgee:Q8R326 CleanEx:MM_PSPC1 Genevestigator:Q8R326
Uniprot:Q8R326
Length = 523
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126
+FVG L ++T+ED ++ F +YGE + V I +G GF++ +R AE A +L+GT++
Sbjct: 83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 142
Query: 127 KQSVRLSWGRNPANKQA-SLSPFTSS 151
+ +R+ + + A +LSP S+
Sbjct: 143 SRPLRIRFATHGAALTVKNLSPVVSN 168
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 125 (49.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++G++ ++K+ P+ +G
Sbjct: 78 SNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRG 137
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 138 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 197
Query: 156 K 156
+
Sbjct: 198 E 198
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 123 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 182
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 183 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 226
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 21 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 80
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 81 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 121
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 129 (50.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 257
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 258 RIVGSKPLYVALAQRKEERKAHLT 281
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 153 MNGKEISGKIIFVGRAQKKVERQAEL 178
Score = 107 (42.7 bits), Expect = 0.00061, P = 0.00061
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 62
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 63 MLLNDRKVFVGRFKSRKEREAEL 85
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 126 (49.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 48 SNGAPGQGPQS-EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------ 100
SNG + GD T + V L N+T ++LR FS GE+ S K+ K
Sbjct: 29 SNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 88
Query: 101 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141
G GFV + ++AE A++ LNG + +++++S+ R P+++
Sbjct: 89 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR-PSSE 128
>UNIPROTKB|E2RIS4 [details] [associations]
symbol:E2RIS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03026810
ProteinModelPortal:E2RIS4 Ensembl:ENSCAFT00000029021 OMA:NEREMPP
Uniprot:E2RIS4
Length = 663
Score = 130 (50.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/86 (33%), Positives = 53/86 (61%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126
+FVG L ++T+++L++ F++YGE V I GKG G ++ +R AE A +L+ T +
Sbjct: 255 LFVGNLPADITEDELKRLFAKYGEPGEVFINKGKGFGLIKLESRALAEIAKAELDDTPMR 314
Query: 127 KQSVRLSWGRNPANKQA-SLSPFTSS 151
+ +R+ + +PA +LSP+ S+
Sbjct: 315 GRQLRVRFATHPAALSVRNLSPYVSN 340
>TAIR|locus:2146668 [details] [associations]
symbol:AT5G04210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL391716
eggNOG:NOG277760 KO:K12872 UniGene:At.27184 IPI:IPI00523206
RefSeq:NP_196041.1 UniGene:At.50700 ProteinModelPortal:Q9FYE0
SMR:Q9FYE0 EnsemblPlants:AT5G04210.1 GeneID:830300
KEGG:ath:AT5G04210 TAIR:At5g04210 InParanoid:Q9FYE0
PhylomeDB:Q9FYE0 Genevestigator:Q9FYE0 Uniprot:Q9FYE0
Length = 193
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 38 FLLVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGL-DPNVTDEDLRQPFSQYGEIASVKI 96
F+L ++ A N P + P+ D S T+++ L + +V ++D+R F YGEI S+ I
Sbjct: 54 FVLEVLAR-ACNTGPLKPPE---DQSIKTLYIRRLINSSVLEQDIRDHFCPYGEIESIVI 109
Query: 97 PVGKG---CGFVQFANRENAEEALHKLNG-TVIGKQSVRLSWGRNPANKQASLSPFTSST 152
+G C F+ + R AE+A+ +L+ T I Q V+L WG + SST
Sbjct: 110 FPHRGGGTCAFLTYTTRLAAEKAMLELSSWTDIKGQRVKLLWGPTEKWQHKMTGAAISST 169
Query: 153 Q 153
Q
Sbjct: 170 Q 170
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 23 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 82
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 23 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 82
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 285 RIVGSKPLYVALAQRKEERKAHLT 308
Score = 123 (48.4 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG + +S+ + + +QA L
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAEL 205
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQLYQS 233
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 28 GPSSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 87
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 28 GPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 87
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 221
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 16 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 75
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 221
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 16 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 75
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 76 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 120 (47.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKGCGFVQFANRENAEEAL--- 117
+F+GGL + T +DL+ FS++GE+ ++K+ P+ +G GFV F E+ ++ +
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 62
Query: 118 -HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFKK 156
HKLNG VI + + + P K LSP T + ++
Sbjct: 63 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIRE 104
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 23 GPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 82
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 228
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 23 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 82
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 83 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 141 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 200
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 201 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 244
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 39 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 98
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 99 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 139
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 123 (48.4 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAEL 276
Score = 107 (42.7 bits), Expect = 0.00071, P = 0.00071
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEL 183
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 129 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 188
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 189 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 232
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 27 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 86
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 87 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 127
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 28 GPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 87
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQS 233
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 28 GPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 87
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 88 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 128
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 123 (48.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 41/110 (37%), Positives = 54/110 (49%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 118
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 106
Query: 119 -------KLN-GTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIEYN 160
KLN G I KQ V + R+ A T+ST + +N
Sbjct: 107 KLNYKDKKLNIGPAIRKQQVGIP--RSSIMPAAGTMYLTTSTGYPYTYHN 154
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRI 205
Query: 112 NAEEALHKLNGTV--IGKQSVRLSWGRNPANK--QASLS 146
AEEA+ LNG + + + + NP+ K QA LS
Sbjct: 206 EAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQAILS 244
Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK--- 100
G A N + S T + V L ++T E+L+ F GEI S K+ K
Sbjct: 46 GSNAINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITG 105
Query: 101 ---GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 106 QSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYAR 144
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ ++ DE L++ FS+YG+ SVK+ P GK G GFV F E+A +A+ +
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + V + + +QA L
Sbjct: 251 MNGKDINGKMVFVGRAQKKVERQAEL 276
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE+L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAEL 276
Score = 107 (42.7 bits), Expect = 0.00074, P = 0.00074
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEL 183
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAEL 276
Score = 107 (42.7 bits), Expect = 0.00074, P = 0.00074
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEL 183
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG + +S+ + + +QA L
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQAEL 276
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 357 RIVGSKPLYVALAQRKEERKAHLT 380
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ ++ D+ L++ F +YG+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NGT + ++V + + +QA L
Sbjct: 252 MNGTELNGKTVFVGRAQKKMERQAEL 277
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANR 110
Q E S N I+V + P++++ED++ F +G I K+ G KG GF+++AN+
Sbjct: 220 QEEAKSFNR-IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANK 278
Query: 111 ENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSST 152
+ +EA+ +N +G Q +R+ P N A P T+ST
Sbjct: 279 QAMDEAIASMNLFDLGGQLLRVGRSITPPNALAC--PTTNST 318
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 116 (45.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR 116
>UNIPROTKB|F1RN28 [details] [associations]
symbol:PSPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042382 "paraspeckles" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:DNREQEM EMBL:CU928808
Ensembl:ENSSSCT00000010490 Uniprot:F1RN28
Length = 460
Score = 127 (49.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GG+ + P + + +FVG L ++T++D ++ F +YGE + V I +G G
Sbjct: 59 GGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFG 118
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
F++ +R AE A +L+GT++ + +R+ + + A +LSP S+
Sbjct: 119 FIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSN 167
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAEL 276
Score = 107 (42.7 bits), Expect = 0.00076, P = 0.00076
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEL 183
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
++V LD ++ DE LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RILGTKPLYVALAQRKEERKAILT 379
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE+L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 251 MNGKEITGKVIFVGRAQKKVERQAEL 276
Score = 107 (42.7 bits), Expect = 0.00076, P = 0.00076
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEL 183
>UNIPROTKB|F1NBH4 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005802 "trans-Golgi network"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 GeneTree:ENSGT00390000013767
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ EMBL:AADN02023354
EMBL:AADN02023355 EMBL:AADN02023356 EMBL:AADN02023357
EMBL:AADN02023358 EMBL:AADN02023359 EMBL:AADN02023360
EMBL:AADN02023361 EMBL:AADN02023362 EMBL:AADN02023363
EMBL:AADN02023364 EMBL:AADN02023365 EMBL:AADN02023366
EMBL:AADN02023367 EMBL:AADN02023368 EMBL:AADN02023369
EMBL:AADN02023370 EMBL:AADN02023371 EMBL:AADN02023372
EMBL:AADN02023373 EMBL:AADN02023374 EMBL:AADN02023375
EMBL:AADN02023376 EMBL:AADN02023377 EMBL:AADN02023378
EMBL:AADN02023379 EMBL:AADN02023380 EMBL:AADN02023381
EMBL:AADN02023382 EMBL:AADN02023383 IPI:IPI00600787
Ensembl:ENSGALT00000011913 Uniprot:F1NBH4
Length = 399
Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENA 113
+E S + V + D DLRQ F Q+G+I V+I KG GFV F N +A
Sbjct: 112 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 171
Query: 114 EEALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTSSTQFKKI 157
+ A KL+GTV+ G++ V + R NK+ +++P+T+ + +
Sbjct: 172 DRAREKLHGTVVEGRKIEVNNATARVMTNKK-TVNPYTNGWKLNPV 216
>ZFIN|ZDB-GENE-030131-6724 [details] [associations]
symbol:zgc:77304 "zgc:77304" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6724 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG009324 KO:K13188 HSSP:O08583
EMBL:BC049507 IPI:IPI00496411 RefSeq:NP_956219.1 UniGene:Dr.75468
ProteinModelPortal:Q7ZWA5 SMR:Q7ZWA5 STRING:Q7ZWA5 GeneID:334784
KEGG:dre:334784 NextBio:20810542 ArrayExpress:Q7ZWA5 Uniprot:Q7ZWA5
Length = 252
Score = 122 (48.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKG--CGFVQFANRENAEE 115
D ++ T+FVG LDP VT+E + + F Q G + VKIP GK FV F + +
Sbjct: 5 DEADRTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNEGKSKLFAFVNFKHEVSVPY 64
Query: 116 ALHKLNGTVI-GKQ-SVRLSWGRNPANKQASLSPFTS 150
AL+ LNG + G+Q +++ G + N++ SP S
Sbjct: 65 ALNLLNGIRLHGRQLNIKFKTGSSHINQEGK-SPANS 100
>UNIPROTKB|F1NRZ4 [details] [associations]
symbol:LOC100859595 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007221
"positive regulation of transcription of Notch receptor target"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0060674 "placenta blood vessel development"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 InterPro:IPR012921
Pfam:PF07744 GO:GO:0045638 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AADN02044860 IPI:IPI00578434 Ensembl:ENSGALT00000000546
Uniprot:F1NRZ4
Length = 957
Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 44 GGYASNGAPGQGPQSEGDS--SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-VGK 100
GG GA G+ S D +N T+F+G LD V++ DLR+ F ++G I V I G+
Sbjct: 344 GGGGGAGAAGEEEISPEDDQRANRTLFLGNLDITVSETDLRRAFDRFGVITEVDIKRPGR 403
Query: 101 G----CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GF++F N + A A ++G V+ + +++ +G+
Sbjct: 404 GQTSTYGFLKFENLDMAHRAKLAMSGKVLLRNPIKIGYGK 443
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 35/116 (30%), Positives = 59/116 (50%)
Query: 54 QGPQSEGDSSNT------TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGK--GC 102
Q SE S N ++VG + ++ + DL+ F +GE+ V++ G+ G
Sbjct: 256 QARNSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGY 315
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN---PANKQASLSPFTSSTQFK 155
GFVQF + A EAL K+NG +G +++R+ G + P N Q + S + + F+
Sbjct: 316 GFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSNFQ 371
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 129 (50.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLT 379
Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T +++ V DE+LR+ FSQ+G+ SVK+ KG GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG + +S+ + + +QA L
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQAEL 276
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++G++ ++K+ P+ +G
Sbjct: 78 SNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRG 137
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 138 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 197
Query: 156 K 156
+
Sbjct: 198 E 198
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKI-PV---GKG 101
SN +P + +F+GGL + T +DL+ FS++G++ ++K+ P+ +G
Sbjct: 78 SNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRG 137
Query: 102 CGFVQFANRENAEEAL----HKLNGTVIGKQSVRLSWGRNPANK--QASLSPFTSSTQFK 155
GFV F E+ ++ + HKLNG VI + + + P K LSP T + +
Sbjct: 138 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 197
Query: 156 K 156
+
Sbjct: 198 E 198
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 45 GYASNGAPGQGPQSEG---DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK- 100
G +SN P G D S T + V L N+T E+ R F GEI S K+ K
Sbjct: 65 GPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI 124
Query: 101 -----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
G GFV + + ++AE+A++ LNG + +++++S+ R
Sbjct: 125 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 165
Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 167 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRI 226
Query: 112 NAEEALHKLNGTVIG--KQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 227 EAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQS 270
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFAN 109
P SE ++V GL N++ DL F+ +G+I + +I + KG GF++F
Sbjct: 122 PSSES-IKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQ 180
Query: 110 RENAEEALHKLNG-TVIG-KQSVRLSWGRNPANK-QASLSP 147
R AE A+ +LNG T G + + + + NP+N +A ++P
Sbjct: 181 RNEAERAIQELNGKTPKGYAEPITVKFANNPSNSAKAQIAP 221
Score = 77 (32.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
NG+ D S T + V L +T E++R FS GE+ S K+ K G
Sbjct: 10 NGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSG 64
Score = 72 (30.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 101 GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141
G GFV + E+AE+A++ LNG + + +++S+ R P+++
Sbjct: 86 GYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYAR-PSSE 125
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 123 (48.4 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 41/110 (37%), Positives = 54/110 (49%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 118
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94
Query: 119 -------KLN-GTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIEYN 160
KLN G I KQ V + R+ A T+ST + +N
Sbjct: 95 KLNYKDKKLNIGPAIRKQQVGIP--RSSIMPAAGTMYLTTSTGYPYTYHN 142
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 116 (45.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR 116
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR 116
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR 116
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 116 (45.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR 116
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 129 (50.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 395
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 396 RIVGSKPLYVALAQRKEERKAHLT 419
Score = 124 (48.7 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 291 MNGKEISGKVIFVGRAQKKVERQAEL 316
Score = 107 (42.7 bits), Expect = 0.00084, P = 0.00084
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 200
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 201 MLLNDRKVFVGRFKSRKEREAEL 223
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKG 101
S G G + + T++ + L T DLR+ F +YG+I V IP KG
Sbjct: 2 SRGGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133
GFV+F R +AE AL + +G ++ + +R++
Sbjct: 62 FGFVRFYERRDAEHALDRTDGKLVDGRELRVT 93
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 48 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKG 101
S G G + + T++ + L T DLR+ F +YG+I V IP KG
Sbjct: 2 SRGGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61
Query: 102 CGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133
GFV+F R +AE AL + +G ++ + +R++
Sbjct: 62 FGFVRFYERRDAEHALDRTDGKLVDGRELRVT 93
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 123 (48.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 59 EGDSS-NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRE 111
E D + + IFVGGL +VT+ L F +YG+I +I VG+ G GF+ F +R
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 112 NAEEALHKLNGTVIGKQSVRLS 133
A++A+ ++G +G + + ++
Sbjct: 65 GADDAIKHMHGRELGNKVISVN 86
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 120 (47.3 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEE 115
S +F+GGL + T++ L + FS+YG IA V + +G GFV F N E+A++
Sbjct: 20 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 79
Query: 116 ALHKLNGTVIGKQSVRL 132
A+ +NG + + +R+
Sbjct: 80 AMAAMNGKQVDGRMIRV 96
>UNIPROTKB|F1LQW3 [details] [associations]
symbol:Sfpq "Protein Sfpq" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:727923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 IPI:IPI00627068 PRIDE:F1LQW3
Ensembl:ENSRNOT00000018049 Uniprot:F1LQW3
Length = 606
Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/108 (28%), Positives = 61/108 (56%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGF 104
G+ +N + + P + + +FVG L ++T+++ ++ F++YGE V I GKG GF
Sbjct: 176 GFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGF 235
Query: 105 VQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
++ +R AE A +L+ T + + +R+ + + A +LSP+ S+
Sbjct: 236 IKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSN 283
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 123 (48.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 41/110 (37%), Positives = 54/110 (49%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 118
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 106
Query: 119 -------KLN-GTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIEYN 160
KLN G I KQ V + R+ A T+ST + +N
Sbjct: 107 KLNYKDKKLNIGPAIRKQQVGIP--RSSIMPAAGTMYLTTSTGYPYTYHN 154
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 123 (48.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 41/110 (37%), Positives = 54/110 (49%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALH--- 118
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F +E+A++ L
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 106
Query: 119 -------KLN-GTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKIEYN 160
KLN G I KQ V + R+ A T+ST + +N
Sbjct: 107 KLNYKDKKLNIGPAIRKQQVGIP--RSSIMPAAGTMYLTTSTGYPYTYHN 154
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
I++ LD + DE L++ FS +G I+ K+ V GKG G V F++ E+A +A+ ++NG
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNG 363
Query: 123 TVIGKQSVRLSWGR 136
+G + + ++ G+
Sbjct: 364 RTVGSKPLHVTLGQ 377
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 363
Query: 123 TVIGKQSVRLSWGR 136
++G + + ++ G+
Sbjct: 364 RIVGSKPLHVTLGQ 377
>UNIPROTKB|Q1LZD9 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 HOGENOM:HOG000231095
HOVERGEN:HBG009801 EMBL:BC116062 IPI:IPI00706558
RefSeq:NP_001068745.1 UniGene:Bt.55499 ProteinModelPortal:Q1LZD9
SMR:Q1LZD9 PRIDE:Q1LZD9 Ensembl:ENSBTAT00000005134 GeneID:506696
KEGG:bta:506696 CTD:55269 InParanoid:Q1LZD9 OMA:DNREQEM
OrthoDB:EOG444KKN NextBio:20867718 Uniprot:Q1LZD9
Length = 520
Score = 127 (49.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GG+ + P + + +FVG L ++T++D ++ F +YGE + V I +G G
Sbjct: 58 GGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFG 117
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQA-SLSPFTSS 151
F++ +R AE A +L+GT++ + +R+ + + A +LSP S+
Sbjct: 118 FIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSN 166
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 205
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 206 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 249
Score = 116 (45.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 123 KAINTLNGLRLQTKTIKVSYAR 144
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 206
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 250
Score = 116 (45.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 124 KAINTLNGLRLQTKTIKVSYAR 145
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRE 111
S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 206
Query: 112 NAEEALHKLNGTVI--GKQSVRLSWGRNPANK--QASLSPFTSS 151
AEEA+ LNG + + + + NP+ K QA LS S
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 250
Score = 116 (45.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
+ S T + V L N+T E+L+ F GEI S K+ K G GFV + + ++AE
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 115 EALHKLNGTVIGKQSVRLSWGR 136
+A++ LNG + +++++S+ R
Sbjct: 124 KAINTLNGLRLQTKTIKVSYAR 145
WARNING: HSPs involving 711 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 161 161 0.00074 107 3 11 22 0.40 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 961
No. of states in DFA: 586 (62 KB)
Total size of DFA: 146 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.69u 0.08s 15.77t Elapsed: 00:00:01
Total cpu time: 15.71u 0.08s 15.79t Elapsed: 00:00:01
Start: Fri May 10 21:11:28 2013 End: Fri May 10 21:11:29 2013
WARNINGS ISSUED: 2