BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031309
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/103 (71%), Positives = 90/103 (87%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99
++L GGYASNGA G QS+GDSSNTTIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP G
Sbjct: 270 VILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAG 329
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
KGCGFVQF++R +A+EA+ KL+G +IGKQ+VRLSWGR+PANKQ
Sbjct: 330 KGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQ 372
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC------GFVQFANRENAEEAL 117
N TI++G L + + L FSQ GE+ SVKI K GFV+F AE+ L
Sbjct: 83 NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVL 142
Query: 118 HKLNGTVI--GKQSVRLSW 134
NGT++ +Q RL+W
Sbjct: 143 QSYNGTMMPNTEQPFRLNW 161
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENAEE 115
S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F +
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSR 234
Query: 116 ALHKLNGTVIGKQSVRL 132
A+ ++NG +++R+
Sbjct: 235 AMTEMNGVYCSSRAMRI 251
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 91/103 (88%), Gaps = 1/103 (0%)
Query: 40 LVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99
++L GG+ SNG+ G G QS+G+S+N TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVG
Sbjct: 296 VILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG 355
Query: 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
KGCGFVQFA+R++AE+A+ LNGTVIGK +VRLSWGR+P NKQ
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQ 397
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEA 116
+ ++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 117 LHKLNGTVIGKQSVRL 132
L ++NG + +R+
Sbjct: 261 LTEMNGAYCSNRQMRV 276
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T++VG L + + L FS GE++SVK+ K G GFV+F +R AEE L
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 120 LNGTVI--GKQSVRLSW 134
+G+V+ Q R++W
Sbjct: 169 YSGSVMPNSDQPFRINW 185
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 86/99 (86%), Gaps = 3/99 (3%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GGY +GA +SEGD+ NTTIFVGGLD +VTDEDL+QPFS++GEI SVKIPVGKGCG
Sbjct: 288 GGYMPSGA---FTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCG 344
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
FVQF NR NAEEAL KLNGTVIGKQ+VRLSWGRNPANKQ
Sbjct: 345 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 111
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 112 NAEEALHKLNGTVIGKQSVRL 132
+A+ ++NG +++R+
Sbjct: 253 ERTKAMTEMNGVKCSSRAMRI 273
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS--QYGEIASVKIPVGK------GCGF 104
G Q+ + N TI+VG L + + L F+ + EI S+K+ K G GF
Sbjct: 91 GNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGF 150
Query: 105 VQFANRENAEEALHKLNGTVI--GKQSVRLSW 134
V+F + + A++ L + NG + Q RL+W
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNW 182
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/99 (76%), Positives = 83/99 (83%), Gaps = 3/99 (3%)
Query: 44 GGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG 103
GGY NG + EGD NTTIFVGGLD +VTDEDL+QPF+++GEI SVKIPVGKGCG
Sbjct: 286 GGYMPNGTLTR---PEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCG 342
Query: 104 FVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
FVQF NR NAEEAL KLNGTVIGKQ+VRLSWGRNPANKQ
Sbjct: 343 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANRE 111
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 112 NAEEALHKLNGTVIGKQSVRL 132
+A+ ++NG +++R+
Sbjct: 251 ERTKAMTEMNGVKCSSRAMRI 271
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKI------PVGKGCGFVQFA 108
Q+ + N TI+VG L + + L F+ E I SVK+ + +G GFV+F
Sbjct: 93 QNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFE 152
Query: 109 NRENAEEALHKLNGTVI--GKQSVRLSWG 135
+ + A++ L + NGT + Q RL+W
Sbjct: 153 SHDVADKVLREFNGTTMPNTDQPFRLNWA 181
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 91/116 (78%), Gaps = 6/116 (5%)
Query: 27 RNSSYCQFNIVFLLVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS 86
R ++Y Q N L L GG+ NG+ S+G+S+N+TIFVGGLD +VT+EDL QPFS
Sbjct: 294 RAAAYGQQNGSQALTLAGGHGGNGS-----MSDGESNNSTIFVGGLDADVTEEDLMQPFS 348
Query: 87 QYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
+GE+ SVKIPVGKGCGFVQFANR++AEEA+ LNGTVIGK +VRLSWGR+P NKQ
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQ 403
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T++VG L + + L FS E++SVK+ K G GFV+F +R AEEAL
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 120 LNGTVI--GKQSVRLSW 134
+G + +Q RL+W
Sbjct: 180 FSGVTMPNAEQPFRLNW 196
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 66 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 118
+IFVG L P+V+D L + F+ +Y + K+ + KG GFV+F + A+
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 119 KLNGTVIGKQSVRL 132
++NG + +R+
Sbjct: 274 EMNGAFCSSRQMRV 287
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
Q Q E D +NTTIFVGGLDP V +E LRQ FS YGE+ VKI GK CGFVQF R +A
Sbjct: 271 QATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASA 330
Query: 114 EEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
E+AL LNGT +G QS+RLSWGR+P++KQ
Sbjct: 331 EQALSSLNGTQLGGQSIRLSWGRSPSSKQ 359
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENA 113
DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV+FA+
Sbjct: 172 DSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQ 231
Query: 114 EEALHKLNGTVIGKQSVRL 132
A+ ++NG + + +R+
Sbjct: 232 LRAMTEMNGVLCSTRPMRI 250
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
++++G L + + L F GE+ S K+ K G GF++F + AE L
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 120 LNGTVIG--KQSVRLSWG 135
NGT++ +Q+ R++W
Sbjct: 145 YNGTLMPNVEQNFRMNWA 162
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 69/89 (77%)
Query: 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENA 113
QG E D +NTTIFVG +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+ANR A
Sbjct: 267 QGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACA 326
Query: 114 EEALHKLNGTVIGKQSVRLSWGRNPANKQ 142
E+AL LNGT +G QS+RLSWGR+P+NKQ
Sbjct: 327 EQALSVLNGTQLGGQSIRLSWGRSPSNKQ 355
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 53 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFV 105
G G + + + T+FVG L P+VTD L + F + Y + K+ KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 106 QFANRENAEEALHKLNGTVIGKQSVR 131
+FA+ A+ ++NG + +R
Sbjct: 221 RFADESEQIRAMTEMNGQYCSSRPMR 246
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
++++G L P + + L F GE + K+ K G GF++F N AE L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 120 LNGTVI--GKQSVRLSWGR 136
NG + +Q+ RL+W +
Sbjct: 141 YNGAPMPSSEQAFRLNWAQ 159
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 68/89 (76%)
Query: 55 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAE 114
G ++ D +NTT+FVGGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+ + AE
Sbjct: 251 GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAE 310
Query: 115 EALHKLNGTVIGKQSVRLSWGRNPANKQA 143
EAL LNG +G +VRLSWGR+P+NKQ+
Sbjct: 311 EALRMLNGVQLGGTTVRLSWGRSPSNKQS 339
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPVG------KGCGFVQFANRENA 113
DS + TIFVG L +VTD L + F + Y + K+ + KG GFV+F++
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 114 EEALHKLNGTVIGKQSVRL 132
A+ ++NG + +R+
Sbjct: 211 IRAMTEMNGVPCSTRPMRI 229
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHK 119
T+++G L + + L F+ GE+ S K+ K G GF++FA+ AE L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 120 LNGTVI---GKQSVRLSW 134
N I Q RL+W
Sbjct: 123 FNNAPIPSFPDQLFRLNW 140
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 118
+ D +NTTIFVGGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN+ +AE AL
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALS 313
Query: 119 KLNGTVIGKQSVRLSWGRNPANKQA 143
LNGT +G QS+RLSWGR+P NKQ+
Sbjct: 314 VLNGTQLGGQSIRLSWGRSP-NKQS 337
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFAN 109
Q+EG + TIFVG L P VTD L F YG + K+ + KG GFV+FA+
Sbjct: 148 QTEG--PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
Query: 110 RENAEEALHKLNGTVIGKQSVRL 132
A+ ++NG + +R+
Sbjct: 206 ENEQMRAMTEMNGQYCSTRPMRI 228
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 53 GQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFV 105
G G Q+ G +S+ ++++G L + + + F+Q GE S K+ K G GF+
Sbjct: 47 GIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 106 QFANRENAEEALHKLNGTVI--GKQSVRLSWGR 136
+F + AE L NG + +Q+ RL+W +
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQ 139
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 71/107 (66%), Gaps = 3/107 (2%)
Query: 31 YCQFNIVFLLVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 90
+ N+V + + G+ S P PQ D++N+T+FVGGL V++E+L+ F +GE
Sbjct: 272 FSPVNVVPVSMPPVGFYSAAQPV--PQF-ADTANSTVFVGGLSKFVSEEELKYLFQNFGE 328
Query: 91 IASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137
I VKIP GKGCGFVQF NR++AE A+++L G +G +RLSWGRN
Sbjct: 329 IVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAE 114
+S +IFVG L PNV + D+ F S+Y S KI V +G GFV+F + + +
Sbjct: 183 ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQK 242
Query: 115 EALHKLNGTVIGKQSVRLSWGRNPANKQASLSP 147
AL ++ G + G + +R+ P +K SP
Sbjct: 243 SALAEMQGQICGDRPIRVGLA-TPKSKAHVFSP 274
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG------FVQFANRENAEEALH 118
TT+++G L+P VT+ ++Q ++ G+ VK+ + G FV+FA+ A A+
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 119 KLNGTVIGKQSV-RLSWGRNPANKQASLS 146
N + G + +L+W ++ S+S
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSIS 181
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 59/80 (73%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALH 118
E D + TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF R +AEEA+
Sbjct: 231 ESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQ 290
Query: 119 KLNGTVIGKQSVRLSWGRNP 138
++ G VIG+Q+VR+SW +NP
Sbjct: 291 RMQGQVIGQQAVRISWSKNP 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 66 TIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFANRENAEEALH 118
+IFVG L P+VTD L++ F Y + K+ KG GFV+FA A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 119 KLNGTVIGKQSVRLS 133
++NG + +R+S
Sbjct: 177 EMNGLYCSTRPMRIS 191
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 52 PGQGPQSEGDSSNT-----TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------ 100
P Q PQ T T+++G L V + L FSQ GE+ SVK+ K
Sbjct: 6 PPQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPE 65
Query: 101 GCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWG 135
G GF++F + AE L NGT + + + RL+W
Sbjct: 66 GYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWA 102
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 56/77 (72%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ + AE+A++ +
Sbjct: 293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTM 352
Query: 121 NGTVIGKQSVRLSWGRN 137
G ++G +RL+WG N
Sbjct: 353 QGALVGTSHIRLAWGHN 369
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 66 TIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFANRENAEEALH 118
+IFVG L P D DL F S Y S KI V + GFV+F++ + + AL
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 119 KLNGTVIGKQSVRLS 133
+ G + + +R+S
Sbjct: 243 HMQGYLCQGRPLRIS 257
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----- 103
+ P Q G + T+++G L+P + ++Q ++ E +VK+ K
Sbjct: 69 SSTPLQDVAGVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLI 128
Query: 104 ---FVQFANRENAEEALHKLNGTVI--GKQSVRLSWG 135
FVQF++ AE AL K N T+I + +L+W
Sbjct: 129 SYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWA 165
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ +R +AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 121 NGTVIGKQSVRLSWGRNPANKQASL 145
G I VRLSWGR+ KQ +L
Sbjct: 369 QGFPIANSRVRLSWGRSA--KQTAL 391
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANRENAEE 115
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F N + +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 116 ALHKLNGTVIGKQSVRL 132
AL ++ G + +++++
Sbjct: 221 ALSEMQGVFLNGRAIKV 237
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 121 NGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQF 154
G ++G +RLSWGR ++ + S ++Q+
Sbjct: 416 QGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQY 449
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 66 TIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI---PV---GKGCGFVQFANRENAEEALH 118
++FVG L P T+ DL F +++ + +V++ P+ + GFV+F + + AL
Sbjct: 193 SLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALI 252
Query: 119 KLNGTVIGKQSVRLSWG 135
+++G +++R+++
Sbjct: 253 EMSGKWFQGRALRVAYA 269
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV + +RE AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 117 LHKL-NGTVIGKQSVRLSWGR 136
+L N VI Q ++L+WGR
Sbjct: 280 AQELSNRLVINGQRLKLTWGR 300
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N +I + + + WGR+ A +
Sbjct: 288 FNKLIINGRRLNVKWGRSQAAR 309
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEA 116
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV + RE AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 117 LHKL-NGTVIGKQSVRLSWGR 136
+L N V+ Q ++L+WGR
Sbjct: 280 AEELSNRLVVNGQRLKLTWGR 300
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 55 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFV 105
G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV
Sbjct: 263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFV 322
Query: 106 QFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
F NR +AE AL LNG +I ++L WG+
Sbjct: 323 AFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-------- 96
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 97 -PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 45 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-------- 96
G + APG GD S T +++G ++P + +E L Q F ++G +ASVKI
Sbjct: 256 GVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEE 313
Query: 97 -PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136
+ CGFV F NR +AE AL LNG +I ++L WG+
Sbjct: 314 RARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D S T+++GGLD VT++DLR F +GEI ++++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 121 -NGTVIGKQSVRLSWGRNPANK 141
N VI ++L WG+ A K
Sbjct: 284 ANKLVIKGVRLKLMWGKPQAPK 305
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D S T+++GGL+ +T++DLR F +GEI S+++ + + C FV + RE AE+A +L
Sbjct: 224 DESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 121 -NGTVIGKQSVRLSWGRNPANK 141
N VI ++L WG+ A K
Sbjct: 284 ANKLVIKGIRLKLMWGKPQAPK 305
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKFIVNGRRLNVKWGRSQAAR 309
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R++AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK- 119
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA R+ AE A K
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKS 287
Query: 120 LNGTVIGKQSVRLSWGRNPANK 141
N ++ + + + WGR+ A +
Sbjct: 288 FNKLIVNGRRLNVKWGRSQAAR 309
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117
S+ +N T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+
Sbjct: 207 SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAI 266
Query: 118 HKLNGTVIGKQSVRLSWGR------NPANKQASL 145
+NGT I V+ WG+ NP +Q +
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 300
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAEEA 116
D T++VG L +VT+ + Q FSQ G + K+ + FV+F +A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQASLSPFT 149
L +NG I + V+++W P++++ S T
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 95
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 123
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 204 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 124 VIGKQSVRLSWGR 136
I V+ WG+
Sbjct: 264 TIEGHVVKCYWGK 276
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 141 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 196
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAE 114
E D T++VG L +VT+ + Q FSQ G S K+ FV+F +A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 115 EALHKLNGTVIGKQSVRLSWGRNPANKQASLS 146
AL +NG I + V+++W P++++ S
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDTS 94
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT 123
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT
Sbjct: 221 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 124 VIGKQSVRLSWGR 136
I V+ WG+
Sbjct: 281 TIEGHVVKCYWGK 293
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 49 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 102
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKI 157
GFV F N+ +AE A+ + G +G + +R +W R P +++ T +F+ +
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDV 213
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--------VGKGCGF------ 104
E D T++VG L +VT+ + Q FSQ G S K+ V GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 105 -------VQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLS 146
V+F +A AL +NG I + V+++W P++++ S
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTS 111
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 122
SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+ +NG
Sbjct: 212 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Query: 123 TVIGKQSVRLSWGR------NPANKQASL 145
T I V+ WG+ NP +Q +
Sbjct: 272 TTIEGHVVKCYWGKETLDMINPVQQQNQI 300
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKL 120
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N+ +AE A+ ++
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 121 NGTVIGKQSVRLSWG-RNPANKQASLSPFTSSTQFKKIEYN 160
G +G + +R +W R P A S + S+T K++ Y+
Sbjct: 168 GGQWLGGRQIRTNWATRKPP---APKSTYESNT--KQLSYD 203
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCG----FVQFANRENAEEA 116
D T++VG L +VT+ + Q FSQ G + K+ + FV+F +A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQASLSPFT 149
L +NG I + V+++W P++++ S T
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSST 95
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEA 116
S +++ LD +V DE L++ FS+YG + S K+ P G +G GFV ++N E A A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 117 LHKLNGTVIGKQSVRLSWGRNPANKQASL 145
L ++NG +IG++ + ++ + +++A L
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
IF+ LD ++ ++ L + FS +G I S K+ + KG GFVQF E+A+ A+ KLN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 122 GTVIGKQSV 130
G ++ + V
Sbjct: 198 GMLMNDKQV 206
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-----GCGFVQFANRENAEEALH 118
N++++ G LDP VT+ L F + SV++ + G ++ F+N +A A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 119 KLNGTVIGKQSVRLSWG-RNPANK 141
LN T + + +R+ R+P+ +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTR 131
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-----CGFVQFANRENAEEALHK 119
T ++V L + +++LR+ F ++G I+S + + GFV F E A A+ K
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG +G + + + + ++ L
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEEL 314
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKL 120
+FVGGL+ T+E L Q FS+YG++A V + +G GFV F N E+A++A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 121 NGTVIGKQSVRLSWGRNPAN 140
NG + + +R+ +N
Sbjct: 68 NGKSVDGRQIRVDQAGKSSN 87
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 119
+ +++ LD +V DE L++ FS+YG + S K+ + +G GFV ++N E A A+ +
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 401
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG +IG++ + ++ + +QA L
Sbjct: 402 MNGKMIGRKPLYVALAQRKEERQAHL 427
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
+F+ LD ++ ++ L + FS +G I S K+ + KG GFVQF E A+ A+ KLN
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 122 GTVIGKQSV 130
G ++ + V
Sbjct: 208 GMLLNDKQV 216
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEAL 117
S T ++V L +TD++L++ F +YG+I+S + + GFV F + E A A+
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 118 HKLNGTVIGKQSVRLSWGRNPANKQASL 145
K+NG +G+ + + + ++++ L
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDREEEL 324
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI-----PVGKGCGFVQFANRENAEEALH 118
N++++VG LDP+V + L F+Q + ++++ G +V FAN E+A A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 117
Query: 119 KLNGTVIGKQSVRLSWG-RNPANK 141
LN I + +R+ R+P+ +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTR 141
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 119
T+F+G L N + + + F+++GE+ SV+IP KG G+VQF+N E+A++AL
Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 120 LNGTVIGKQSVRLSW 134
L G I + VRL +
Sbjct: 328 LQGEYIDNRPVRLDF 342
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHK 119
TIFVG L ++ DE L++ F G + ++ +G G+V F N+ AE+A+ +
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 120 LNGTVI 125
+ G I
Sbjct: 229 MQGKEI 234
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG--KGCGFVQFANRENAEEALH 118
++ ++V LDP+++DE L++ FS +G + S K+ P G KG GFV FA E A EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 119 KLNGTVIGKQSVRLSWGRNPANKQASL 145
+L+G +I + + ++ + +++ L
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRRVRL 403
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
IF+ LD ++ + L FS +G I S K+ V KG GFVQ+AN E+A++A+ KLN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 122 GTVIGKQSV 130
G ++ + V
Sbjct: 186 GMLLNDKQV 194
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEAL 117
NT+++VG LD NVTD L F Q G + +V++ G G+V F N ++A A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 118 HKLNGTVIGKQSVRLSWG-RNPANKQA 143
+LN + + +R+ + R+P+ +++
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRS 121
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T ++V L + TD+DL+ F +YG+I S + KG GFV F N ++A A+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 120 LNG 122
LNG
Sbjct: 275 LNG 277
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121
S +++G L +VT+E+L++ FS YGEI+ I K F++ R NAE A L+
Sbjct: 110 SGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLD 169
Query: 122 GTVIGKQSVRLSWGRNPAN-KQASLSPFTSS 151
G + + +R+ + N + +L+PF S+
Sbjct: 170 GRMRKNKPIRIRFAPNATTIRVKNLTPFVSN 200
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GK--GCGFVQFANRENAEEAL 117
TTI V L P V++E L + F +G++ I V GK G G V+FA + A AL
Sbjct: 187 TTIRVKNLTPFVSNELLFKSFEVFGQVERAVIIVDDRGKTTGEGIVEFARKSGAMSAL 244
>sp|O94621|US109_SCHPO U1 snRNP-associated protein usp109 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp109 PE=1 SV=2
Length = 365
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120
D +NT ++V L N+T ++LR F +GEI + V G + FA R AE+A++++
Sbjct: 185 DPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAINEM 242
Query: 121 NGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQFKKI 157
N + ++LSW R P+ +L P ST + +
Sbjct: 243 NNFPLHGVRIQLSWARPPS---MALLPSKQSTYWPAL 276
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG----CGFVQFANRENAEEALHKLNG 122
+F+ +DP V++ D++ F +Y I++ + G F+ AN + + A ++ G
Sbjct: 88 LFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQG 147
Query: 123 TVIGKQSV 130
K+S+
Sbjct: 148 AFCLKRSI 155
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKL 120
+++ LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++
Sbjct: 294 VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 121 NGTVIGKQSVRLSWGRNPANKQASLS 146
NG ++G + + ++ + ++A L+
Sbjct: 354 NGRIVGSKPLYVALAQRKEERKAHLT 379
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANRENAEEALHK 119
T +++ V DE L++ FSQ+G+ SVK+ P GK G GFV + E+A +A+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
+NG I + + + + +QA L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAEL 276
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
+F+ LD ++ ++ L FS +G I S K+ KG FV F +E A++A+ K+NG
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEL 183
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALH 118
+++VG L +VT+ L + FS G + S+++ G +V F +AE AL
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 119 KLNGTVIGKQSVRLSWG-RNPANKQASL 145
+N VI + +R+ W R+P+ +++ +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGV 98
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
++V LD ++ D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++G + + ++ + ++A L+
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILT 379
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHK 119
+++VG L P+VT+ L + FS G I S+++ G ++ F +AE AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 120 LNGTVIGKQSVRLSWG-RNPANKQASL 145
+N ++ Q +R+ W R+P +++ +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGV 98
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
IF+ L+ ++ ++ L FS +G I S K+ +G GFV F E A++A++ +NG
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNDRKVFVGHFKSRREREAEL 183
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHK 119
T I+V L +V ++ L+ FSQ+G++ SVK+ + GFV F E A++A+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 120 LNG 122
+NG
Sbjct: 251 MNG 253
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK---GCGFVQFANRENAEE 115
++NT+++VG LDP+VT+ L + FS G +AS+++ V + G +V F N + E
Sbjct: 44 ANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGER 103
Query: 116 ALHKLNGTVIGKQSVRLSWG-RNPA 139
A+ +LN ++I + R+ W R+PA
Sbjct: 104 AMEQLNYSLIRNRPCRIMWSQRDPA 128
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T ++ +DP VTD++ + F+++G+I S + KG GFV F + A++A+ +
Sbjct: 227 TNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDE 286
Query: 120 LNGTVIGKQSVRLSWGRNPANKQASL 145
L+ + Q + ++ + + ++ L
Sbjct: 287 LHDSDFKGQKLFVARAQKKSEREEEL 312
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
+++ + + DE LR+ F+ +G I S KI V +G GFV ++ E A +A+ +
Sbjct: 330 VNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSE 389
Query: 120 LNGTVIGKQSVRLSWGR 136
+NG ++ + + ++ +
Sbjct: 390 MNGKMLDNRPLYVALAQ 406
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNG 122
IF+ LD + ++ L F+ +G I S K+ + G GFV + E AE A+ +NG
Sbjct: 137 IFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNG 196
Query: 123 TVIGKQSV 130
++ + V
Sbjct: 197 MLLNDKKV 204
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 58 SEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN 109
S GD+ N T IFVGGL P +TDE+ RQ F YG + V I +G GFV F +
Sbjct: 101 SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 110 RENAEEALHKLNGTVIGKQ 128
+ + LHK + GKQ
Sbjct: 161 EDAVDSVLHKTFHDLSGKQ 179
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAE 114
DS +FVGG+ ++ LR+ F+ YGE++ + K G GFV F++ +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 115 EALHK 119
L +
Sbjct: 62 RVLQE 66
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 47 ASNGAPGQGPQSEGDSSNT-TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK-- 100
AS AP ++ N+ +++VG LDP+VT+ L + FS G++AS+++ V +
Sbjct: 29 ASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRS 88
Query: 101 -GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG-RNPA 139
G +V + + E+ E+AL +LN TVI + R+ W R+PA
Sbjct: 89 LGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPA 129
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHK 119
T I+V +D +VTDED R+ F ++G+I S I +G GFV + E A A+
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDH 288
Query: 120 LN 121
LN
Sbjct: 289 LN 290
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
+F+ LD + ++ L F+ +G I S K+ KG GFV + E A A+ +N
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 122 GTVIGKQSV 130
G ++ ++ V
Sbjct: 198 GMLLNEKKV 206
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 50 GAPGQGPQS--------EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-- 99
G P PQ+ E S I+V + P++++ED++ F +G I K+ G
Sbjct: 204 GRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTS 263
Query: 100 ----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSST 152
KG GF+++AN++ +EA+ +N +G Q +R+ P N A P T+ST
Sbjct: 264 LHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALA--CPTTNST 318
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 9/80 (11%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVG---KGCGFVQFANRENAEEALHKL 120
++VG + + ++ +R F+ +G I S+ + P+ KG FV++ E A+ AL ++
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 121 NGTVIGKQSVRLSWGRNPAN 140
NG ++G +++++ GR P+N
Sbjct: 192 NGALMGGRNIKV--GR-PSN 208
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126
+FVG L ++ DED ++ F +YG+ V I +G GF++ R AE A +L+GTV+G
Sbjct: 78 LFVGNLPSDMADEDFKKLFFKYGDAKEVFINRDRGFGFIRLETRTLAEIAKAELDGTVLG 137
Query: 127 KQSVRLSWGRNPANKQA-SLSPFTSS 151
+ +R+ + + A +LSP S+
Sbjct: 138 NRPIRIRFATHGAALTVRNLSPVVSN 163
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-----GCGFVQFANRENAEEAL-H 118
+ V L P V++E L Q FSQ+G + + V G G V+FAN+ A +AL H
Sbjct: 150 AALTVRNLSPVVSNELLEQAFSQFGPVERAIVIVDDRGRPTGKGIVEFANKPAARKALDH 209
Query: 119 KLNGTVIGKQSVR 131
+G ++ S R
Sbjct: 210 CADGALLLTTSPR 222
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
++V LD + DE LR+ FS +G I S K+ + KG GFV F++ E A +A+ ++NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 123 TVIGKQSVRLSWGRNPANKQASLS 146
++ + + ++ + +QA L+
Sbjct: 356 RIVATKPLYVALAQRKEERQAYLT 379
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGKGC---GFVQFANRENAEEALHK 119
+++VG L P+VT+ L + FS G I S++I + G +V F + ++AE AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 120 LNGTVIGKQSVRLSWG-RNPANKQASL 145
+N VI + VR+ W R+P+ +++ +
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGV 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNG 122
IFV LD ++ ++ L S +G I S + KG GFV F E AE A+ K+NG
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 123 TVIGKQSVRLSWGRNPANKQASL 145
++ + V + ++ ++A L
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAEL 183
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLN 121
+++ ++ DE L+ F ++G SVK+ KG GFV F E+A++A+ ++N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 122 GTVIGKQSVRLSWGRNPANKQASL 145
G + + + + + +Q L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTEL 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,946,324
Number of Sequences: 539616
Number of extensions: 2493725
Number of successful extensions: 7882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 437
Number of HSP's that attempted gapping in prelim test: 6038
Number of HSP's gapped (non-prelim): 1709
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)