Query 031309
Match_columns 161
No_of_seqs 154 out of 1733
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 9.8E-18 2.1E-22 117.2 13.3 79 61-139 31-115 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.7E-21 126.2 11.5 77 63-139 268-350 (352)
3 KOG0107 Alternative splicing f 99.7 6.6E-17 1.4E-21 113.3 7.8 79 62-140 8-87 (195)
4 PF00076 RRM_1: RNA recognitio 99.7 2.5E-16 5.3E-21 96.3 8.0 65 67-131 1-70 (70)
5 KOG0148 Apoptosis-promoting RN 99.7 8.3E-16 1.8E-20 114.5 10.5 82 59-140 159-240 (321)
6 TIGR01659 sex-lethal sex-letha 99.7 8.2E-16 1.8E-20 121.4 11.0 80 59-138 102-187 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.3E-16 1.8E-20 121.5 10.5 77 63-139 2-84 (352)
8 KOG0122 Translation initiation 99.6 2.4E-15 5.2E-20 110.5 10.5 79 60-138 185-269 (270)
9 KOG0125 Ataxin 2-binding prote 99.6 2.1E-15 4.5E-20 114.9 9.0 82 57-138 89-174 (376)
10 KOG0121 Nuclear cap-binding pr 99.6 1.3E-15 2.8E-20 101.9 6.5 76 62-137 34-115 (153)
11 PLN03120 nucleic acid binding 99.6 5.3E-15 1.2E-19 111.0 10.5 73 64-137 4-79 (260)
12 PLN03213 repressor of silencin 99.6 1.4E-14 3E-19 115.8 9.6 77 61-137 7-87 (759)
13 PF14259 RRM_6: RNA recognitio 99.6 2.5E-14 5.5E-19 87.7 8.7 65 67-131 1-70 (70)
14 TIGR01648 hnRNP-R-Q heterogene 99.6 3E-14 6.4E-19 118.4 11.6 77 62-140 231-309 (578)
15 KOG0111 Cyclophilin-type pepti 99.6 3.6E-15 7.8E-20 108.3 5.1 89 63-151 9-104 (298)
16 TIGR01659 sex-lethal sex-letha 99.6 3.5E-14 7.6E-19 112.1 10.9 77 62-138 191-275 (346)
17 KOG0117 Heterogeneous nuclear 99.6 1.1E-14 2.4E-19 114.9 7.7 87 54-142 249-335 (506)
18 TIGR01645 half-pint poly-U bin 99.6 3.4E-14 7.5E-19 118.4 10.9 79 63-141 203-287 (612)
19 KOG0105 Alternative splicing f 99.5 2.4E-14 5.3E-19 101.5 7.7 77 62-138 4-83 (241)
20 KOG4207 Predicted splicing fac 99.5 2.2E-14 4.8E-19 103.3 7.2 76 61-136 10-91 (256)
21 smart00362 RRM_2 RNA recogniti 99.5 1E-13 2.2E-18 84.0 9.2 68 66-133 1-72 (72)
22 PLN03121 nucleic acid binding 99.5 8.1E-14 1.8E-18 103.3 10.1 74 62-136 3-79 (243)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2E-13 4.3E-18 112.5 12.6 78 61-138 272-351 (481)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.2E-13 2.7E-18 113.7 11.3 75 64-138 2-78 (481)
25 TIGR01645 half-pint poly-U bin 99.5 9E-14 2E-18 115.9 10.2 75 62-136 105-185 (612)
26 KOG0117 Heterogeneous nuclear 99.5 1.5E-13 3.2E-18 108.6 10.3 88 50-137 69-163 (506)
27 KOG0130 RNA-binding protein RB 99.5 7.2E-14 1.5E-18 94.4 7.3 80 58-137 66-151 (170)
28 KOG0114 Predicted RNA-binding 99.5 2.8E-13 6.1E-18 87.6 9.7 77 62-138 16-95 (124)
29 KOG0144 RNA-binding protein CU 99.5 2.9E-14 6.4E-19 112.1 6.0 80 62-141 122-209 (510)
30 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-13 3.1E-18 114.4 10.3 78 59-136 53-136 (578)
31 TIGR01628 PABP-1234 polyadenyl 99.5 1.6E-13 3.5E-18 114.9 10.5 72 66-137 2-79 (562)
32 PF13893 RRM_5: RNA recognitio 99.5 4.4E-13 9.5E-18 78.8 8.8 55 81-135 1-56 (56)
33 TIGR01622 SF-CC1 splicing fact 99.5 4.4E-13 9.5E-18 109.5 11.9 74 64-137 186-265 (457)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.4E-13 9.6E-18 110.8 11.8 75 63-137 294-374 (509)
35 KOG0145 RNA-binding protein EL 99.5 3.5E-13 7.6E-18 100.2 10.0 82 61-142 38-125 (360)
36 TIGR01628 PABP-1234 polyadenyl 99.5 2.7E-13 5.9E-18 113.5 10.5 77 62-138 283-364 (562)
37 cd00590 RRM RRM (RNA recogniti 99.4 1.4E-12 3.1E-17 79.3 9.4 69 66-134 1-74 (74)
38 KOG0113 U1 small nuclear ribon 99.4 1.1E-12 2.4E-17 99.1 10.2 78 61-138 98-181 (335)
39 KOG0149 Predicted RNA-binding 99.4 2.9E-13 6.3E-18 99.1 6.7 74 62-136 10-89 (247)
40 KOG0131 Splicing factor 3b, su 99.4 2.7E-13 5.9E-18 95.8 6.2 75 62-136 7-87 (203)
41 TIGR01622 SF-CC1 splicing fact 99.4 2.4E-12 5.2E-17 105.2 11.5 76 61-137 86-167 (457)
42 KOG0109 RNA-binding protein LA 99.4 6.8E-13 1.5E-17 100.0 5.9 72 65-138 3-74 (346)
43 COG0724 RNA-binding proteins ( 99.4 3.5E-12 7.5E-17 95.8 9.7 73 64-136 115-193 (306)
44 smart00360 RRM RNA recognition 99.4 4.7E-12 1E-16 76.3 7.9 65 69-133 1-71 (71)
45 KOG0127 Nucleolar protein fibr 99.4 2.6E-12 5.7E-17 103.8 8.3 76 64-139 117-197 (678)
46 KOG0145 RNA-binding protein EL 99.4 7.6E-12 1.7E-16 93.2 10.1 77 61-137 275-357 (360)
47 TIGR01642 U2AF_lg U2 snRNP aux 99.3 7.7E-12 1.7E-16 103.5 10.4 75 61-136 172-258 (509)
48 KOG0126 Predicted RNA-binding 99.3 3.6E-13 7.7E-18 95.3 0.6 75 61-135 32-112 (219)
49 KOG0144 RNA-binding protein CU 99.3 9.1E-12 2E-16 98.2 8.2 81 61-141 31-120 (510)
50 KOG0108 mRNA cleavage and poly 99.3 7.1E-12 1.5E-16 101.0 7.8 75 65-139 19-99 (435)
51 KOG0148 Apoptosis-promoting RN 99.3 1E-11 2.2E-16 92.8 6.9 76 64-139 62-143 (321)
52 KOG0151 Predicted splicing reg 99.3 1.2E-11 2.6E-16 102.5 7.8 129 1-137 119-256 (877)
53 KOG0153 Predicted RNA-binding 99.3 2.9E-11 6.3E-16 93.1 9.2 81 57-137 221-302 (377)
54 KOG0132 RNA polymerase II C-te 99.2 2.8E-11 6E-16 101.2 7.9 78 64-141 421-498 (894)
55 KOG0109 RNA-binding protein LA 99.2 2.4E-11 5.2E-16 91.7 6.5 130 5-138 20-150 (346)
56 KOG4206 Spliceosomal protein s 99.2 1E-10 2.3E-15 85.4 8.0 77 64-140 9-92 (221)
57 KOG0127 Nucleolar protein fibr 99.2 6.1E-11 1.3E-15 96.1 7.3 78 63-140 4-87 (678)
58 KOG0147 Transcriptional coacti 99.2 4.6E-11 9.9E-16 96.6 6.2 71 66-136 280-356 (549)
59 KOG0415 Predicted peptidyl pro 99.2 1.1E-10 2.3E-15 90.4 7.3 85 56-140 231-321 (479)
60 KOG0124 Polypyrimidine tract-b 99.1 4.4E-11 9.5E-16 92.9 4.4 70 64-133 113-188 (544)
61 smart00361 RRM_1 RNA recogniti 99.1 3.4E-10 7.3E-15 69.5 7.4 56 78-133 2-70 (70)
62 KOG0146 RNA-binding protein ET 99.1 1E-10 2.3E-15 87.5 6.0 84 58-141 279-368 (371)
63 KOG0131 Splicing factor 3b, su 99.1 1.5E-10 3.2E-15 82.1 6.1 83 59-141 91-180 (203)
64 KOG4212 RNA-binding protein hn 99.1 3E-10 6.5E-15 90.1 8.0 74 64-137 44-123 (608)
65 KOG1457 RNA binding protein (c 99.1 2E-09 4.3E-14 78.8 11.4 80 61-140 31-120 (284)
66 KOG0123 Polyadenylate-binding 99.1 8.2E-10 1.8E-14 88.0 9.8 75 66-141 78-156 (369)
67 KOG4661 Hsp27-ERE-TATA-binding 99.1 6.6E-10 1.4E-14 90.7 8.5 81 59-139 400-486 (940)
68 KOG0146 RNA-binding protein ET 99.1 3.2E-10 7E-15 84.9 6.0 80 62-141 17-104 (371)
69 KOG0110 RNA-binding protein (R 99.1 9E-10 1.9E-14 91.6 9.0 72 65-136 516-596 (725)
70 KOG0110 RNA-binding protein (R 99.0 3.9E-10 8.4E-15 93.7 5.7 77 62-138 611-693 (725)
71 KOG0106 Alternative splicing f 99.0 7.7E-10 1.7E-14 81.3 4.9 71 65-137 2-72 (216)
72 KOG4212 RNA-binding protein hn 99.0 2.5E-09 5.5E-14 84.9 8.0 76 60-135 532-608 (608)
73 KOG4208 Nucleolar RNA-binding 98.9 1.2E-08 2.5E-13 73.8 8.2 81 58-138 43-130 (214)
74 KOG0123 Polyadenylate-binding 98.9 1.2E-08 2.5E-13 81.5 8.1 71 66-139 3-76 (369)
75 KOG1190 Polypyrimidine tract-b 98.8 2.9E-08 6.2E-13 78.3 9.0 75 64-138 297-373 (492)
76 KOG0124 Polypyrimidine tract-b 98.8 1.3E-08 2.8E-13 79.4 6.6 76 64-139 210-291 (544)
77 PF04059 RRM_2: RNA recognitio 98.8 4.8E-08 1E-12 63.5 8.2 75 65-139 2-88 (97)
78 KOG4660 Protein Mei2, essentia 98.8 9.9E-09 2.1E-13 83.5 5.4 73 59-131 70-143 (549)
79 KOG0116 RasGAP SH3 binding pro 98.8 3E-08 6.5E-13 79.8 8.0 75 63-138 287-367 (419)
80 KOG0533 RRM motif-containing p 98.7 6.7E-08 1.5E-12 72.5 8.6 77 62-138 81-162 (243)
81 KOG1548 Transcription elongati 98.7 8.1E-08 1.8E-12 74.3 8.5 78 61-138 131-221 (382)
82 KOG4205 RNA-binding protein mu 98.7 6.7E-08 1.4E-12 75.2 6.7 77 64-141 97-179 (311)
83 KOG4209 Splicing factor RNPS1, 98.7 8.4E-08 1.8E-12 71.9 7.0 80 58-138 95-180 (231)
84 KOG4205 RNA-binding protein mu 98.7 3.3E-08 7.2E-13 76.8 4.8 77 63-140 5-87 (311)
85 KOG4454 RNA binding protein (R 98.5 4.7E-08 1E-12 71.5 2.0 76 62-137 7-86 (267)
86 KOG0226 RNA-binding proteins [ 98.4 4.5E-07 9.7E-12 67.7 4.5 76 58-133 184-265 (290)
87 PF11608 Limkain-b1: Limkain b 98.4 2.8E-06 6E-11 53.3 6.9 69 65-137 3-76 (90)
88 KOG1457 RNA binding protein (c 98.3 1.2E-06 2.5E-11 64.5 4.2 63 64-126 210-274 (284)
89 COG5175 MOT2 Transcriptional r 98.2 2.8E-06 6E-11 66.0 6.1 75 63-137 113-202 (480)
90 PF08777 RRM_3: RNA binding mo 98.2 4.3E-06 9.4E-11 55.3 5.8 70 64-133 1-75 (105)
91 KOG0106 Alternative splicing f 98.2 1.6E-06 3.4E-11 64.0 3.4 72 61-134 96-167 (216)
92 KOG4206 Spliceosomal protein s 98.1 2.5E-05 5.3E-10 57.5 9.0 79 58-136 140-220 (221)
93 KOG0120 Splicing factor U2AF, 98.1 4.7E-06 1E-10 68.4 5.4 81 59-139 284-370 (500)
94 KOG1456 Heterogeneous nuclear 98.0 5.6E-05 1.2E-09 59.6 9.4 79 59-137 282-362 (494)
95 KOG0105 Alternative splicing f 97.9 0.0004 8.6E-09 50.0 11.0 68 58-126 109-176 (241)
96 KOG4211 Splicing factor hnRNP- 97.9 9.6E-05 2.1E-09 60.0 8.5 75 61-137 7-85 (510)
97 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.7E-05 1E-09 44.0 5.1 52 65-117 2-53 (53)
98 KOG1190 Polypyrimidine tract-b 97.8 0.00012 2.6E-09 58.3 7.3 77 62-138 412-491 (492)
99 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00028 6.1E-09 46.1 7.3 72 63-136 5-90 (100)
100 KOG1995 Conserved Zn-finger pr 97.7 9.3E-05 2E-09 57.9 5.6 79 61-139 63-155 (351)
101 KOG3152 TBP-binding protein, a 97.7 2.5E-05 5.3E-10 58.6 2.2 67 63-129 73-157 (278)
102 KOG0147 Transcriptional coacti 97.7 2.4E-05 5.3E-10 64.1 2.2 77 59-136 174-256 (549)
103 KOG2314 Translation initiation 97.6 0.00034 7.4E-09 57.9 8.4 74 62-135 56-141 (698)
104 KOG2416 Acinus (induces apopto 97.6 5.6E-05 1.2E-09 62.7 3.8 78 60-137 440-521 (718)
105 KOG0112 Large RNA-binding prot 97.6 0.00015 3.2E-09 62.7 6.4 79 60-138 451-531 (975)
106 KOG1456 Heterogeneous nuclear 97.6 0.00047 1E-08 54.5 8.7 81 63-143 119-204 (494)
107 KOG0120 Splicing factor U2AF, 97.6 0.00026 5.6E-09 58.3 7.3 55 82-136 427-490 (500)
108 KOG4211 Splicing factor hnRNP- 97.5 0.00047 1E-08 56.1 7.8 71 62-133 101-177 (510)
109 KOG4210 Nuclear localization s 97.4 0.00019 4.2E-09 55.6 4.2 77 64-141 185-267 (285)
110 KOG1548 Transcription elongati 97.4 0.0009 1.9E-08 52.4 7.5 80 58-137 259-351 (382)
111 KOG4849 mRNA cleavage factor I 97.3 0.00034 7.3E-09 54.9 4.2 72 61-132 77-156 (498)
112 KOG1855 Predicted RNA-binding 97.2 0.00056 1.2E-08 54.8 4.7 62 62-123 229-309 (484)
113 KOG0129 Predicted RNA-binding 97.2 0.0018 4E-08 53.0 7.2 59 61-120 256-326 (520)
114 PF08952 DUF1866: Domain of un 97.1 0.0029 6.2E-08 44.0 7.1 55 80-137 52-106 (146)
115 KOG2193 IGF-II mRNA-binding pr 97.0 0.00056 1.2E-08 54.9 2.8 74 65-138 2-76 (584)
116 KOG2135 Proteins containing th 97.0 0.0015 3.3E-08 53.0 5.1 82 57-139 365-447 (526)
117 PF08675 RNA_bind: RNA binding 96.9 0.0091 2E-07 37.5 7.2 58 62-122 7-64 (87)
118 KOG0129 Predicted RNA-binding 96.8 0.0047 1E-07 50.7 6.9 62 58-119 364-432 (520)
119 KOG2202 U2 snRNP splicing fact 96.7 0.00075 1.6E-08 50.7 1.7 55 82-136 86-146 (260)
120 KOG4307 RNA binding protein RB 96.7 0.0078 1.7E-07 51.3 7.8 70 65-134 868-943 (944)
121 KOG1996 mRNA splicing factor [ 96.7 0.0069 1.5E-07 46.7 6.3 57 80-136 302-365 (378)
122 PF04847 Calcipressin: Calcipr 96.5 0.013 2.7E-07 42.7 6.7 62 77-138 8-71 (184)
123 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0092 2E-07 43.1 5.4 75 62-136 5-96 (176)
124 KOG4676 Splicing factor, argin 96.4 0.0077 1.7E-07 48.1 5.2 67 66-133 9-84 (479)
125 KOG2253 U1 snRNP complex, subu 96.3 0.0025 5.5E-08 53.7 2.5 77 55-134 31-107 (668)
126 KOG0112 Large RNA-binding prot 96.2 0.001 2.2E-08 57.8 -0.5 75 61-135 369-448 (975)
127 KOG2068 MOT2 transcription fac 96.1 0.002 4.4E-08 50.2 0.7 77 62-138 75-163 (327)
128 PF07576 BRAP2: BRCA1-associat 95.9 0.14 3E-06 34.1 8.7 62 65-126 13-80 (110)
129 KOG1365 RNA-binding protein Fu 95.9 0.017 3.7E-07 46.1 5.0 72 64-135 280-359 (508)
130 PF10309 DUF2414: Protein of u 95.9 0.064 1.4E-06 31.9 6.3 54 65-120 6-62 (62)
131 KOG4285 Mitotic phosphoprotein 95.8 0.068 1.5E-06 41.4 7.9 69 64-134 197-266 (350)
132 PF15023 DUF4523: Protein of u 95.8 0.076 1.7E-06 36.9 7.3 76 59-136 81-160 (166)
133 KOG4574 RNA-binding protein (c 95.8 0.0059 1.3E-07 53.0 2.3 75 65-139 299-375 (1007)
134 PF03880 DbpA: DbpA RNA bindin 95.7 0.085 1.8E-06 32.4 6.8 67 66-135 2-74 (74)
135 KOG4660 Protein Mei2, essentia 95.4 0.03 6.6E-07 46.5 5.1 52 88-139 413-474 (549)
136 KOG0128 RNA-binding protein SA 95.2 0.0092 2E-07 51.8 1.5 74 64-137 736-814 (881)
137 KOG4307 RNA binding protein RB 94.8 0.038 8.2E-07 47.3 4.0 73 62-134 432-510 (944)
138 KOG0115 RNA-binding protein p5 94.7 0.034 7.4E-07 42.0 3.2 58 65-122 32-94 (275)
139 KOG2591 c-Mpl binding protein, 94.7 0.073 1.6E-06 44.5 5.3 72 61-133 172-247 (684)
140 KOG1365 RNA-binding protein Fu 94.4 0.41 8.9E-06 38.5 8.7 55 65-119 162-225 (508)
141 KOG0804 Cytoplasmic Zn-finger 94.2 0.16 3.4E-06 41.5 6.0 64 64-127 74-142 (493)
142 KOG0128 RNA-binding protein SA 93.7 0.0032 7E-08 54.5 -4.5 63 64-126 667-735 (881)
143 KOG4410 5-formyltetrahydrofola 89.5 2.3 5E-05 33.1 7.1 47 64-110 330-377 (396)
144 KOG2318 Uncharacterized conser 89.0 3.5 7.6E-05 35.0 8.4 74 61-134 171-304 (650)
145 PF11767 SET_assoc: Histone ly 87.2 4.7 0.0001 24.2 6.9 55 75-132 11-65 (66)
146 KOG4019 Calcineurin-mediated s 85.1 0.79 1.7E-05 33.1 2.3 74 65-138 11-90 (193)
147 KOG2193 IGF-II mRNA-binding pr 81.9 0.048 1E-06 44.2 -5.3 72 64-135 80-154 (584)
148 KOG4210 Nuclear localization s 77.5 2.9 6.3E-05 32.6 3.3 73 62-134 86-164 (285)
149 PF10567 Nab6_mRNP_bdg: RNA-re 74.6 11 0.00023 29.5 5.5 76 61-136 12-106 (309)
150 KOG4483 Uncharacterized conser 68.9 15 0.00033 30.0 5.4 56 63-119 390-446 (528)
151 KOG1295 Nonsense-mediated deca 65.0 11 0.00024 30.4 4.0 61 65-125 8-77 (376)
152 PF15513 DUF4651: Domain of un 58.2 26 0.00056 20.8 3.8 19 79-97 9-27 (62)
153 KOG2295 C2H2 Zn-finger protein 55.0 2.7 5.8E-05 35.6 -1.0 66 64-129 231-302 (648)
154 KOG4676 Splicing factor, argin 53.8 14 0.0003 30.2 2.8 78 55-133 43-125 (479)
155 KOG2891 Surface glycoprotein [ 50.0 9.6 0.00021 29.6 1.4 75 65-139 150-269 (445)
156 PF07292 NID: Nmi/IFP 35 domai 49.0 14 0.0003 23.6 1.7 26 61-86 49-74 (88)
157 PF02714 DUF221: Domain of unk 46.9 26 0.00056 27.3 3.4 35 103-139 1-35 (325)
158 PF03439 Spt5-NGN: Early trans 43.1 61 0.0013 20.1 4.1 35 90-124 33-68 (84)
159 PF03468 XS: XS domain; Inter 42.8 26 0.00055 23.5 2.4 46 66-111 10-67 (116)
160 PF00403 HMA: Heavy-metal-asso 37.2 79 0.0017 17.8 5.9 53 66-118 1-57 (62)
161 PF11823 DUF3343: Protein of u 33.4 71 0.0015 19.1 3.2 26 101-126 2-27 (73)
162 COG0150 PurM Phosphoribosylami 32.3 12 0.00026 29.9 -0.5 45 79-123 276-322 (345)
163 PF12829 Mhr1: Transcriptional 29.7 1.5E+02 0.0032 19.0 4.2 51 72-122 20-73 (91)
164 KOG4008 rRNA processing protei 29.0 34 0.00074 26.0 1.4 34 62-95 38-71 (261)
165 PF09707 Cas_Cas2CT1978: CRISP 28.7 1.2E+02 0.0025 19.2 3.6 43 66-108 27-72 (86)
166 PF07530 PRE_C2HC: Associated 28.2 1.2E+02 0.0026 18.1 3.5 56 79-137 2-64 (68)
167 PF11411 DNA_ligase_IV: DNA li 27.5 44 0.00095 17.5 1.3 16 74-89 19-34 (36)
168 KOG0156 Cytochrome P450 CYP2 s 27.2 1.4E+02 0.003 25.2 4.9 59 68-130 36-97 (489)
169 TIGR03636 L23_arch archaeal ri 26.1 1.7E+02 0.0036 18.0 4.4 53 66-118 15-72 (77)
170 cd00027 BRCT Breast Cancer Sup 25.7 1E+02 0.0022 16.9 2.9 27 65-91 2-28 (72)
171 cd04894 ACT_ACR-like_1 ACT dom 25.6 1.1E+02 0.0023 18.3 2.8 39 71-109 6-46 (69)
172 COG0724 RNA-binding proteins ( 25.1 2.2E+02 0.0048 20.4 5.3 41 59-99 220-260 (306)
173 COG2608 CopZ Copper chaperone 23.5 1.7E+02 0.0037 17.3 5.3 44 66-109 5-48 (71)
174 PF08544 GHMP_kinases_C: GHMP 23.4 1.7E+02 0.0038 17.3 5.9 42 79-121 37-80 (85)
175 COG0030 KsgA Dimethyladenosine 23.4 1.3E+02 0.0029 23.1 3.7 29 65-93 96-124 (259)
176 KOG0115 RNA-binding protein p5 23.1 47 0.001 25.5 1.2 44 110-153 4-47 (275)
177 PRK14548 50S ribosomal protein 23.0 2E+02 0.0044 18.0 4.3 53 67-119 23-80 (84)
178 PF14893 PNMA: PNMA 22.8 62 0.0013 25.9 1.9 23 64-86 18-40 (331)
179 KOG2187 tRNA uracil-5-methyltr 21.7 95 0.002 26.5 2.8 40 100-139 63-102 (534)
180 smart00596 PRE_C2HC PRE_C2HC d 21.5 1.4E+02 0.0031 18.0 2.8 55 79-136 2-63 (69)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=9.8e-18 Score=117.15 Aligned_cols=79 Identities=27% Similarity=0.589 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
....++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|+.|++.|++..++|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345678999999999999999999999999999998754 69999999999999999999999999999999999
Q ss_pred ccCCC
Q 031309 135 GRNPA 139 (161)
Q Consensus 135 a~~~~ 139 (161)
++.+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97643
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=1.3e-16 Score=126.20 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.+..|||+|||..+++++|.++|++||.|..+.++.+ +|||||+|.+.++|..||..|||..++|+.|+|.|..
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 3457999999999999999999999999999998764 7999999999999999999999999999999999988
Q ss_pred CCC
Q 031309 137 NPA 139 (161)
Q Consensus 137 ~~~ 139 (161)
+..
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 653
No 3
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=6.6e-17 Score=113.35 Aligned_cols=79 Identities=30% Similarity=0.569 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
...++||||||+..+++.+|+.+|..||.|..|+|... .|||||+|++..+|+.|+..|+|..|.|..|+|++......
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 34789999999999999999999999999999998765 69999999999999999999999999999999999886543
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=2.5e-16 Score=96.28 Aligned_cols=65 Identities=48% Similarity=0.847 Sum_probs=61.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 67 l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
|||+|||.++++++|+++|+.||.|..+.+..+ +++|||+|.+.++|+.|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988763 68999999999999999999999999999986
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8.3e-16 Score=114.45 Aligned_cols=82 Identities=35% Similarity=0.689 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...++.++|||||++..++|++|++.|++||+|.+|++.+++||+||.|.+.|.|..||..+|+.++.|+.+++.|.+..
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 031309 139 AN 140 (161)
Q Consensus 139 ~~ 140 (161)
..
T Consensus 239 ~~ 240 (321)
T KOG0148|consen 239 DD 240 (321)
T ss_pred CC
Confidence 43
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=8.2e-16 Score=121.36 Aligned_cols=80 Identities=26% Similarity=0.498 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
......++|||+|||.++++++|+++|+.||.|..|+|+.+ +|||||+|.+.++|+.|+..|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556789999999999999999999999999999998764 589999999999999999999999999999999
Q ss_pred EeccCC
Q 031309 133 SWGRNP 138 (161)
Q Consensus 133 ~~a~~~ 138 (161)
.|+++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 999864
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=8.3e-16 Score=121.52 Aligned_cols=77 Identities=34% Similarity=0.597 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+..+|||+|||..+++++|+++|+.||+|..|.|+.+ +|||||+|.+.++|+.|+..|+|..+.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3578999999999999999999999999999999764 5899999999999999999999999999999999998
Q ss_pred CCC
Q 031309 137 NPA 139 (161)
Q Consensus 137 ~~~ 139 (161)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 653
No 8
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.4e-15 Score=110.51 Aligned_cols=79 Identities=28% Similarity=0.545 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+..+|=|.||+.++++.+|.++|.+||.|.++.+.++ +|||||.|.++++|.+||..|||.-+++..|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3456788999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred eccCC
Q 031309 134 WGRNP 138 (161)
Q Consensus 134 ~a~~~ 138 (161)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99985
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=114.91 Aligned_cols=82 Identities=27% Similarity=0.476 Sum_probs=74.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.+.......+|+|.|||+...+-||+.+|++||.|.+|+|+.+ |||+||+|++.+||++|-.+|||..+.||+|.|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 3444556789999999999999999999999999999999874 899999999999999999999999999999999
Q ss_pred EeccCC
Q 031309 133 SWGRNP 138 (161)
Q Consensus 133 ~~a~~~ 138 (161)
..|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998754
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.3e-15 Score=101.91 Aligned_cols=76 Identities=29% Similarity=0.609 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
..+++||||||+..++|++|.++|+++|+|..|.+-.| .|||||+|.+.++|..|+..++|..++.++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45689999999999999999999999999999987655 599999999999999999999999999999999986
Q ss_pred cC
Q 031309 136 RN 137 (161)
Q Consensus 136 ~~ 137 (161)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 11
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=5.3e-15 Score=110.99 Aligned_cols=73 Identities=29% Similarity=0.416 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|+.|+ .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 568999999999999999999999999999999875 589999999999999999 5999999999999999873
No 12
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=1.4e-14 Score=115.84 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--CcEEEEEecCH--HHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANR--ENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~--~g~afv~f~~~--~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.....+||||||++.+++++|..+|..||.|..|.|++. +|||||+|.+. .++.+||..|||..|.|+.|+|..|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 445679999999999999999999999999999999874 89999999987 78999999999999999999999988
Q ss_pred C
Q 031309 137 N 137 (161)
Q Consensus 137 ~ 137 (161)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 6
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=2.5e-14 Score=87.72 Aligned_cols=65 Identities=37% Similarity=0.727 Sum_probs=59.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 67 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 67 l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
|||+|||+.+++++|.++|+.+|.|..+.+..+ +++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999998876 59999999999999999999999999999874
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=3e-14 Score=118.43 Aligned_cols=77 Identities=25% Similarity=0.491 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccc--CCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~--g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
....+|||+||+..+++++|+++|++| |.|.+|.++ ++||||+|.+.++|.+|+..||+..|+|+.|+|+|+++..
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 445789999999999999999999999 999999877 6799999999999999999999999999999999998754
Q ss_pred C
Q 031309 140 N 140 (161)
Q Consensus 140 ~ 140 (161)
.
T Consensus 309 ~ 309 (578)
T TIGR01648 309 K 309 (578)
T ss_pred c
Confidence 3
No 15
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.6e-15 Score=108.30 Aligned_cols=89 Identities=29% Similarity=0.623 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..++||||+|...+++..|...|-+||.|..|.++.| +||+||+|...|+|..||..||+.+|.|+.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4568999999999999999999999999999999886 7999999999999999999999999999999999999
Q ss_pred CCCCccCCCCC-CCCc
Q 031309 137 NPANKQASLSP-FTSS 151 (161)
Q Consensus 137 ~~~~~~~~~~~-~~~~ 151 (161)
|..-+..+..| |..+
T Consensus 89 P~kikegsqkPvWADD 104 (298)
T KOG0111|consen 89 PEKIKEGSQKPVWADD 104 (298)
T ss_pred CccccCCCCCCcccCc
Confidence 87666555554 4433
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=3.5e-14 Score=112.14 Aligned_cols=77 Identities=30% Similarity=0.538 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCC--eEeEEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLS 133 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~i~v~ 133 (161)
...++|||+|||..+++++|+++|++||.|..+.|+.+ ++||||+|.+.++|++||+.||+..+.+ +.|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 34678999999999999999999999999999998875 4899999999999999999999999875 689999
Q ss_pred eccCC
Q 031309 134 WGRNP 138 (161)
Q Consensus 134 ~a~~~ 138 (161)
+++..
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 99864
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=114.85 Aligned_cols=87 Identities=26% Similarity=0.530 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 54 QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 54 ~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
..+..........|||.||+..+|++.|+++|+.||.|.+|..+ +.||||.|.++++|.+||+.+||++|+|..|.|.
T Consensus 249 ~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 249 EEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred cCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 33444456667899999999999999999999999999999888 4599999999999999999999999999999999
Q ss_pred eccCCCCcc
Q 031309 134 WGRNPANKQ 142 (161)
Q Consensus 134 ~a~~~~~~~ 142 (161)
+|+|+..++
T Consensus 327 LAKP~~k~k 335 (506)
T KOG0117|consen 327 LAKPVDKKK 335 (506)
T ss_pred ecCChhhhc
Confidence 999876543
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=3.4e-14 Score=118.39 Aligned_cols=79 Identities=25% Similarity=0.546 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3579999999999999999999999999999998764 6999999999999999999999999999999999998
Q ss_pred CCCCc
Q 031309 137 NPANK 141 (161)
Q Consensus 137 ~~~~~ 141 (161)
+++..
T Consensus 283 ~pP~~ 287 (612)
T TIGR01645 283 TPPDA 287 (612)
T ss_pred CCccc
Confidence 65443
No 19
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.4e-14 Score=101.51 Aligned_cols=77 Identities=22% Similarity=0.463 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...++|||||||.++.+.+|+++|.+||.|..|.|... ..||||+|++..+|+.||..-+|..++|..|+|++++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 34678999999999999999999999999999998654 479999999999999999999999999999999999865
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=2.2e-14 Score=103.28 Aligned_cols=76 Identities=32% Similarity=0.618 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
...-+.|-|-||.+-++.++|..+|++||.|..|.|+.| +|||||-|....+|+.|+++|+|..|+|+.|+|.+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 445578999999999999999999999999999999986 69999999999999999999999999999999998
Q ss_pred cc
Q 031309 135 GR 136 (161)
Q Consensus 135 a~ 136 (161)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 87
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=1e-13 Score=84.05 Aligned_cols=68 Identities=50% Similarity=0.894 Sum_probs=63.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC----cEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~----g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
+|||+|||..+++++|+++|..||.+..+.+..+. ++|||+|.+.++|+.|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888765 999999999999999999999999999998873
No 22
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=8.1e-14 Score=103.26 Aligned_cols=74 Identities=28% Similarity=0.344 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..+++|||+||++.+++++|+++|+.||.|..|+|.++ .++|||+|.+.++++.|+ .|+|..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45689999999999999999999999999999999986 479999999999999999 899999999999998644
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=2e-13 Score=112.49 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 61 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 61 ~~~~~~l~V~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...+.+|||+|||. .+++++|+++|+.||.|..|.++.+ +|+|||+|.+.++|..|+..|||..|.|+.|+|.+++..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 34678999999998 6999999999999999999998876 699999999999999999999999999999999998753
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=1.2e-13 Score=113.67 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHh--CCceeCCeEeEEEeccCC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL--NGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l--~g~~~~g~~i~v~~a~~~ 138 (161)
+..|||+|||..+++++|+++|++||.|..+.++.+++||||+|.+.++|+.|+..+ ++..+.|+.|+|.|+..+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 468999999999999999999999999999999999999999999999999999864 778999999999998754
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.51 E-value=9e-14 Score=115.92 Aligned_cols=75 Identities=24% Similarity=0.565 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...++|||+|||+.+++++|+++|.+||.|.+|.++.+ +|||||+|.+.++|+.|+..|||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34579999999999999999999999999999998764 799999999999999999999999999999999865
Q ss_pred c
Q 031309 136 R 136 (161)
Q Consensus 136 ~ 136 (161)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.5e-13 Score=108.57 Aligned_cols=88 Identities=25% Similarity=0.467 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCc
Q 031309 50 GAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGT 123 (161)
Q Consensus 50 ~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~ 123 (161)
+++++.+..+..+.++.||||.||.++.|++|..+|++.|+|-+++|++| +|||||+|.+.++|+.||+.||++
T Consensus 69 ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~ 148 (506)
T KOG0117|consen 69 GGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY 148 (506)
T ss_pred CCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence 44555567777788999999999999999999999999999999999885 799999999999999999999999
Q ss_pred eeC-CeEeEEEeccC
Q 031309 124 VIG-KQSVRLSWGRN 137 (161)
Q Consensus 124 ~~~-g~~i~v~~a~~ 137 (161)
+|. |+.|.|..+..
T Consensus 149 Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 149 EIRPGKLLGVCVSVA 163 (506)
T ss_pred cccCCCEeEEEEeee
Confidence 985 99998876653
No 27
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=7.2e-14 Score=94.43 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
+.....+..|||.++....++++|++.|..||+|..+.+..| +|||+|+|.+.+.|+.|+..+||..|-|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 345678899999999999999999999999999999999876 69999999999999999999999999999999
Q ss_pred EEeccC
Q 031309 132 LSWGRN 137 (161)
Q Consensus 132 v~~a~~ 137 (161)
|.|+-.
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 999864
No 28
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=2.8e-13 Score=87.59 Aligned_cols=77 Identities=21% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
.....|||.|||.+++.++..++|++||.|..|+|... +|-|||.|++..+|.+|++.|+|..+.++.|.|-+-.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 34568999999999999999999999999999998664 799999999999999999999999999999999876643
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.9e-14 Score=112.09 Aligned_cols=80 Identities=31% Similarity=0.597 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCce-eC--CeEeEEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IG--KQSVRLS 133 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~-~~--g~~i~v~ 133 (161)
.+..+||||.|+..++|.+++++|++||.|++|.|.+| ||||||.|.+++-|..||+.|||.. +. ..+|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 55789999999999999999999999999999999885 8999999999999999999999964 44 4589999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
||.++..+
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99987665
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=1.4e-13 Score=114.37 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeC-CeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~i~v 132 (161)
.....+++|||+|||.+++|++|.++|++||.|..++|++| +|||||+|.+.++|+.||+.||+..+. |+.|.|
T Consensus 53 ~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 53 VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 33455799999999999999999999999999999998764 799999999999999999999999885 777777
Q ss_pred Eecc
Q 031309 133 SWGR 136 (161)
Q Consensus 133 ~~a~ 136 (161)
.++.
T Consensus 133 ~~S~ 136 (578)
T TIGR01648 133 CISV 136 (578)
T ss_pred cccc
Confidence 6654
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.50 E-value=1.6e-13 Score=114.88 Aligned_cols=72 Identities=35% Similarity=0.716 Sum_probs=68.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
+|||+|||.++++++|.++|++||.|..|++.++ +|||||+|.+.++|.+|+..+++..+.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999999999999999999999999999999764 58999999999999999999999999999999999864
No 32
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.48 E-value=4.4e-13 Score=78.82 Aligned_cols=55 Identities=36% Similarity=0.667 Sum_probs=51.4
Q ss_pred HHHHhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 81 LRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 81 l~~~f~~~g~v~~~~i~~~~-g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
|.++|++||+|..+.+..+. ++|||+|.+.++|..|+..|||..+.|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998877 99999999999999999999999999999999986
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.48 E-value=4.4e-13 Score=109.54 Aligned_cols=74 Identities=34% Similarity=0.689 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
..+|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 679999999999999999999999999999988753 68999999999999999999999999999999999763
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.48 E-value=4.4e-13 Score=110.84 Aligned_cols=75 Identities=17% Similarity=0.441 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
...+|||+|||..+++++|+++|..||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4579999999999999999999999999999988653 6999999999999999999999999999999999986
Q ss_pred C
Q 031309 137 N 137 (161)
Q Consensus 137 ~ 137 (161)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=3.5e-13 Score=100.25 Aligned_cols=82 Identities=34% Similarity=0.608 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC------cEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~------g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
....+.|.|.-||.++++++|+.+|+..|+|++|++++|+ ||+||.|.+++||++|+..|||..+..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4456789999999999999999999999999999999973 8999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 031309 135 GRNPANKQ 142 (161)
Q Consensus 135 a~~~~~~~ 142 (161)
|||....-
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 99865443
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.48 E-value=2.7e-13 Score=113.52 Aligned_cols=77 Identities=35% Similarity=0.654 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
....+|||+||+..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 44678999999999999999999999999999988764 6999999999999999999999999999999999988
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
..
T Consensus 363 ~k 364 (562)
T TIGR01628 363 RK 364 (562)
T ss_pred Cc
Confidence 53
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1.4e-12 Score=79.34 Aligned_cols=69 Identities=48% Similarity=0.877 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
+|+|+|||..+++++|.++|..+|.|..+.+..+ +++|||+|.+.++|..|++.+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988764 58999999999999999999999999999999864
No 38
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.1e-12 Score=99.09 Aligned_cols=78 Identities=22% Similarity=0.489 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+-++|||+-|+++++|..|+..|+.||.|..|.|+.+ +|||||+|....+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 355689999999999999999999999999999999875 79999999999999999999999999999999988
Q ss_pred ccCC
Q 031309 135 GRNP 138 (161)
Q Consensus 135 a~~~ 138 (161)
-+..
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7653
No 39
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.9e-13 Score=99.15 Aligned_cols=74 Identities=35% Similarity=0.524 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
-.-++||||+|++.+..+.|+++|++||+|++..++.| +||+||+|.+.++|.+|+ .-..-.|+||+-.|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc-~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC-KDPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHh-cCCCCcccccccccchh
Confidence 34578999999999999999999999999999988765 799999999999999998 45557889998888766
Q ss_pred c
Q 031309 136 R 136 (161)
Q Consensus 136 ~ 136 (161)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=2.7e-13 Score=95.83 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
..+.+||||||+..++++.|.++|-+.|+|..++++++ +||||++|.+.++|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34679999999999999999999999999999999986 699999999999999999999999999999999887
Q ss_pred c
Q 031309 136 R 136 (161)
Q Consensus 136 ~ 136 (161)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 41
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=2.4e-12 Score=105.23 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....+|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|| .|+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 445679999999999999999999999999999999764 699999999999999999 5999999999999988
Q ss_pred ccC
Q 031309 135 GRN 137 (161)
Q Consensus 135 a~~ 137 (161)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 764
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=6.8e-13 Score=99.96 Aligned_cols=72 Identities=28% Similarity=0.588 Sum_probs=68.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
.+|||||||..+++.+|+.+|.+||+|.+|+|+ +.|+||..++...+..||+.|||..|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999999 789999999999999999999999999999999988865
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=3.5e-12 Score=95.82 Aligned_cols=73 Identities=37% Similarity=0.695 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..+|||+|||..+++++|.++|..||.+..+.+..+ +|+|||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999999888765 5999999999999999999999999999999999965
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=4.7e-12 Score=76.29 Aligned_cols=65 Identities=43% Similarity=0.787 Sum_probs=59.8
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 69 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 69 V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
|+|||..+++++|+++|..||.|..+.+..+ +++|||+|.+.++|..|+..+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999988764 4799999999999999999999999999998873
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.6e-12 Score=103.83 Aligned_cols=76 Identities=29% Similarity=0.555 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
..+|.|+|||+.+...+|+.+|+.||.|..|.|++. .|||||+|....+|..|++.+|+..|+|++|-|.||-+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 679999999999999999999999999999999874 599999999999999999999999999999999999865
Q ss_pred C
Q 031309 139 A 139 (161)
Q Consensus 139 ~ 139 (161)
.
T Consensus 197 d 197 (678)
T KOG0127|consen 197 D 197 (678)
T ss_pred c
Confidence 3
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=7.6e-12 Score=93.20 Aligned_cols=77 Identities=32% Similarity=0.543 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
...++.|||-||.++.+|..|.++|++||.|..|++++| +||+||.+.+.++|..||..|||..+.++.|.|.|
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 345789999999999999999999999999999999886 79999999999999999999999999999999998
Q ss_pred ccC
Q 031309 135 GRN 137 (161)
Q Consensus 135 a~~ 137 (161)
...
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 764
No 47
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.34 E-value=7.7e-12 Score=103.47 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=65.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccc------------CCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQY------------GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ 128 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~------------g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~ 128 (161)
.....+|||||||..+++++|.++|..+ +.|..+.+..++|||||+|.+.++|..|| .|+|..+.|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~ 250 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNV 250 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCc
Confidence 3446799999999999999999999864 35677777778999999999999999999 6999999999
Q ss_pred EeEEEecc
Q 031309 129 SVRLSWGR 136 (161)
Q Consensus 129 ~i~v~~a~ 136 (161)
.|+|....
T Consensus 251 ~l~v~r~~ 258 (509)
T TIGR01642 251 FLKIRRPH 258 (509)
T ss_pred eeEecCcc
Confidence 99997543
No 48
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.6e-13 Score=95.30 Aligned_cols=75 Identities=29% Similarity=0.508 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+..-|||||||+..+|.+|.-+|++||.|+.|-+++| +||||+.|.+..+...|+..|||..|.|+.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 456778999999999999999999999999999999886 69999999999999999999999999999999985
Q ss_pred c
Q 031309 135 G 135 (161)
Q Consensus 135 a 135 (161)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=9.1e-12 Score=98.25 Aligned_cols=81 Identities=27% Similarity=0.621 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCce-eC--CeEeE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTV-IG--KQSVR 131 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~-~~--g~~i~ 131 (161)
+.+.-++|||-+|..++|.+|+++|++||.|.+|-|++| +|||||.|.++++|..|+.+||+.. |. .++|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 355678999999999999999999999999999999987 6999999999999999999999864 54 55899
Q ss_pred EEeccCCCCc
Q 031309 132 LSWGRNPANK 141 (161)
Q Consensus 132 v~~a~~~~~~ 141 (161)
|.+|.....+
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9999865443
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=7.1e-12 Score=101.00 Aligned_cols=75 Identities=31% Similarity=0.583 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
..|||||+|+.+++++|..+|+..|.|..+++..| +||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999998775 699999999999999999999999999999999998754
Q ss_pred C
Q 031309 139 A 139 (161)
Q Consensus 139 ~ 139 (161)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 51
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1e-11 Score=92.83 Aligned_cols=76 Identities=37% Similarity=0.834 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
-.-|||+-|...++.+.|++.|.+||+|.++++++| +||+||.|-..++|+.||..|||.=|.+|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 457999999999999999999999999999999886 79999999999999999999999999999999999864
Q ss_pred CC
Q 031309 138 PA 139 (161)
Q Consensus 138 ~~ 139 (161)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 43
No 52
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.27 E-value=1.2e-11 Score=102.51 Aligned_cols=129 Identities=30% Similarity=0.517 Sum_probs=93.6
Q ss_pred CcccchhhhhccceeccceeeeeeecCCCccchhhHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHH
Q 031309 1 MEKRRHCCERKGEREERTLLYKLCFHRNSSYCQFNIVFLLVLIGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDED 80 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~~~~~ 80 (161)
||.+|-+.+|..+..-+...-.... ++.......+.....-.++ .++......+..+.|||+||++.+++..
T Consensus 119 eELkr~QE~Re~R~~~r~~~~~~~~-------d~~~s~r~~~~p~~~~~s~-~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ 190 (877)
T KOG0151|consen 119 EELKRIQEEREERHKDRHHLEDPQS-------DSAVSSRFDPLPSRFDPSG-RPGSFDDGDPQTTNLYVGNLNPSVDENF 190 (877)
T ss_pred HHHHHHHHHHHHHhhhhhccccccc-------CcchhhccCCCccccCCCC-CCCcCCCCCCcccceeeecCCccccHHH
Confidence 5777888887777666665521111 1111112222222211111 2333344466778999999999999999
Q ss_pred HHHHhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 81 LRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 81 l~~~f~~~g~v~~~~i~~~---------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
|...|+.||+|..+.|+.. +.|+||.|-++.+|++|+..|+|..+.+..+++-|++.
T Consensus 191 ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 191 LLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred HHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 9999999999999988753 58999999999999999999999999999999999975
No 53
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.9e-11 Score=93.08 Aligned_cols=81 Identities=43% Similarity=0.781 Sum_probs=72.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHh-CCceeCCeEeEEEec
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWG 135 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~i~v~~a 135 (161)
.++.+....+|||++|...+++.+|.++|.+||+|..+.+...++||||+|.++++|+.|...+ +...++|.+|.|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3444566789999999999999999999999999999999888999999999999999999865 545689999999999
Q ss_pred cC
Q 031309 136 RN 137 (161)
Q Consensus 136 ~~ 137 (161)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=2.8e-11 Score=101.23 Aligned_cols=78 Identities=33% Similarity=0.741 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCCc
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~~ 141 (161)
.++||||.|+.++++.+|..+|+.||.|.+|.++..++||||.+..+.+|.+|+.+|....+.++.|+|.|+.....+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999976444
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=91.68 Aligned_cols=130 Identities=22% Similarity=0.357 Sum_probs=97.8
Q ss_pred chhhhhccceeccceeeeeeecCCCccchhhHHHHHHHhCCCCCCCCCC-CCCCCCCCCCCcEEEEcCCCCCCCHHHHHH
Q 031309 5 RHCCERKGEREERTLLYKLCFHRNSSYCQFNIVFLLVLIGGYASNGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQ 83 (161)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~ 83 (161)
|.+.+..|+.-++++...+.+.---..++... +....-++...+..- ...........++|+||||.+.++..+|+.
T Consensus 20 r~lFe~ygkVlECDIvKNYgFVHiEdktaaed--airNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa 97 (346)
T KOG0109|consen 20 RSLFEQYGKVLECDIVKNYGFVHIEDKTAAED--AIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRA 97 (346)
T ss_pred HHHHHhhCceEeeeeecccceEEeecccccHH--HHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhh
Confidence 55688889999999888777754333333222 222233333222211 111222245678999999999999999999
Q ss_pred HhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 84 PFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 84 ~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
.|.+||+|.+++|. ++|+||.|.-.++|..|++.|++.++.|++++|.++.++
T Consensus 98 ~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 98 KFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 99999999999999 789999999999999999999999999999999988754
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.19 E-value=1e-10 Score=85.39 Aligned_cols=77 Identities=26% Similarity=0.536 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHH----HhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 64 NTTIFVGGLDPNVTDEDLRQ----PFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~----~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..+|||.||+..+..++|+. +|++||.|..|...+. +|-|||.|.+.+.|-.|+.+|+|..+.|+.+++.+|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 34999999999999998877 9999999999876543 7999999999999999999999999999999999998
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
....
T Consensus 89 s~sd 92 (221)
T KOG4206|consen 89 SDSD 92 (221)
T ss_pred Cccc
Confidence 7543
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=6.1e-11 Score=96.06 Aligned_cols=78 Identities=28% Similarity=0.400 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.+.+|||++||+.++.++|.++|+.+|+|..+.+..+ +||+||.|...+|++.|+..+.+..++|+.|+|.++.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 3479999999999999999999999999999988764 7999999999999999999999999999999999988
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
.+..
T Consensus 84 ~R~r 87 (678)
T KOG0127|consen 84 KRAR 87 (678)
T ss_pred cccc
Confidence 6543
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.17 E-value=4.6e-11 Score=96.65 Aligned_cols=71 Identities=35% Similarity=0.656 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.||||||.+++++++|+.+|++||.|..|.+..+ +||+||+|.+.++|.+|+..|||.+|-|+.|+|....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3999999999999999999999999999998875 7999999999999999999999999999999998654
No 59
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-10 Score=90.41 Aligned_cols=85 Identities=27% Similarity=0.577 Sum_probs=76.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC------cEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 56 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~------g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
+.....++...|||-.|.+.++.++|+-+|+.||.|..|.+++++ .||||+|.+.+++++|.=.|++..|+++.
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 444556677899999999999999999999999999999999873 69999999999999999999999999999
Q ss_pred eEEEeccCCCC
Q 031309 130 VRLSWGRNPAN 140 (161)
Q Consensus 130 i~v~~a~~~~~ 140 (161)
|+|.|+.+...
T Consensus 311 IHVDFSQSVsk 321 (479)
T KOG0415|consen 311 IHVDFSQSVSK 321 (479)
T ss_pred EEeehhhhhhh
Confidence 99999876443
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=4.4e-11 Score=92.93 Aligned_cols=70 Identities=26% Similarity=0.624 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
-++||||.+.+.+.|+.|+..|.+||+|.+|.+..| +||+||+|+-+|.|+.|++.|||..++|+.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 478999999999999999999999999999988765 7999999999999999999999999999999986
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=3.4e-10 Score=69.53 Aligned_cols=56 Identities=30% Similarity=0.612 Sum_probs=48.3
Q ss_pred HHHHHHHhc----ccCCeEEEE-EeC--------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 78 DEDLRQPFS----QYGEIASVK-IPV--------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 78 ~~~l~~~f~----~~g~v~~~~-i~~--------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
+++|+++|. +||.|.++. +.. .+|++||.|.+.++|..|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999884 322 27999999999999999999999999999999863
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1e-10 Score=87.50 Aligned_cols=84 Identities=29% Similarity=0.462 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
....+++++|||-.||....+.+|..+|-+||.|.+.++..| +-|+||.|.+..+++.||.+|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 455678999999999999999999999999999988766554 68999999999999999999999999999999
Q ss_pred EEeccCCCCc
Q 031309 132 LSWGRNPANK 141 (161)
Q Consensus 132 v~~a~~~~~~ 141 (161)
|.+.|++...
T Consensus 359 VQLKRPkdan 368 (371)
T KOG0146|consen 359 VQLKRPKDAN 368 (371)
T ss_pred hhhcCccccC
Confidence 9999986543
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=1.5e-10 Score=82.12 Aligned_cols=83 Identities=30% Similarity=0.543 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeC------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++||+||.+.+++..|.+.|+.||.+... .+.+ .++|+||.|.+.+.+.+|+..++|..+.+++|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 344556899999999999999999999999987653 3333 268999999999999999999999999999999
Q ss_pred EEeccCCCCc
Q 031309 132 LSWGRNPANK 141 (161)
Q Consensus 132 v~~a~~~~~~ 141 (161)
|+++.....+
T Consensus 171 v~ya~k~~~k 180 (203)
T KOG0131|consen 171 VSYAFKKDTK 180 (203)
T ss_pred EEEEEecCCC
Confidence 9999755443
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=3e-10 Score=90.08 Aligned_cols=74 Identities=23% Similarity=0.458 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc-ccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~-~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.+.+||.|||+++.|.+|+++|. +.|+|..|.+..| +|||.|+|.++|.+++|++.||.+.+.|++|.|.....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999996 6889999998876 79999999999999999999999999999999987654
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.10 E-value=2e-09 Score=78.79 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-C------CcEEEEEecCHHHHHHHHHHhCCceeC---CeEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-G------KGCGFVQFANRENAEEALHKLNGTVIG---KQSV 130 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~-~------~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~i 130 (161)
....++|||.+||.++...+|..+|..|-.-+...|.. + +.+||++|.+..+|..|++.|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34468999999999999999999999986555554433 1 369999999999999999999999996 7899
Q ss_pred EEEeccCCCC
Q 031309 131 RLSWGRNPAN 140 (161)
Q Consensus 131 ~v~~a~~~~~ 140 (161)
++++|++...
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999997644
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=8.2e-10 Score=88.04 Aligned_cols=75 Identities=31% Similarity=0.601 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCCc
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~~ 141 (161)
.|||-||++.++...|.++|+.||+|.+|++..+ +|| ||+|.+.+.|++|+..+||..+.|+.|.|........+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 3999999999999999999999999999999775 789 99999999999999999999999999999877654433
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=6.6e-10 Score=90.74 Aligned_cols=81 Identities=21% Similarity=0.443 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.....+..|||.+|...+.-.+|+.+|++||.|+-..++.+ +.|+||++.+.++|.+||..||..+|+|+.|-|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 33455789999999999999999999999999988877654 679999999999999999999999999999999
Q ss_pred EeccCCC
Q 031309 133 SWGRNPA 139 (161)
Q Consensus 133 ~~a~~~~ 139 (161)
+-++..+
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9988643
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.2e-10 Score=84.93 Aligned_cols=80 Identities=26% Similarity=0.607 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCcee-C--CeEeEEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI-G--KQSVRLS 133 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~-~--g~~i~v~ 133 (161)
.++++||||.|...-.|++++.+|..||.|.+|.+.++ +||+||.|.+..+|+.||+.|||... - ...|.|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 47789999999999999999999999999999988773 89999999999999999999999753 3 3479999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
++....++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99876554
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=9e-10 Score=91.58 Aligned_cols=72 Identities=39% Similarity=0.594 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
++|||.||++.++.++|...|.+.|.|..+.|... .|||||+|.+.++|+.|++.|+|..++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988653 399999999999999999999999999999999998
Q ss_pred c
Q 031309 136 R 136 (161)
Q Consensus 136 ~ 136 (161)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=3.9e-10 Score=93.69 Aligned_cols=77 Identities=27% Similarity=0.568 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...+.|+|.|||+..+-.+++.+|..||.|..|+|+.. +|||||+|-++.+|..|+.+|.+..+.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 33679999999999999999999999999999999873 799999999999999999999999999999999999
Q ss_pred cCC
Q 031309 136 RNP 138 (161)
Q Consensus 136 ~~~ 138 (161)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 864
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=7.7e-10 Score=81.33 Aligned_cols=71 Identities=25% Similarity=0.599 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
..+|||+||+.+.+.+|+.+|..||.+..+.+. .||+||+|.+..+|..|+..||+.+|.|..+.|+|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 369999999999999999999999999999877 78999999999999999999999999999999999985
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.97 E-value=2.5e-09 Score=84.91 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.....++|||.|||.++||..|++-|..||.|...+|+.. +..+.|.|.++++|+.|+..|+|..++|+.|+|.+.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3455688999999999999999999999999999988543 455699999999999999999999999999999874
No 73
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=73.82 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=69.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccc-CCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~-g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
.+......-+||..+|..+.+.++..+|.++ |.|..+++.++ +|||||+|.+.+.|.-|.+.||++-+.|+.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3344555679999999999999999999998 67777777553 7999999999999999999999999999999
Q ss_pred EEEeccCC
Q 031309 131 RLSWGRNP 138 (161)
Q Consensus 131 ~v~~a~~~ 138 (161)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99876654
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.2e-08 Score=81.48 Aligned_cols=71 Identities=30% Similarity=0.588 Sum_probs=65.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
.|||| +++++..|.++|+++|+|..+++.+| -|||||.|.++++|.+||..+|...+.|++|++.|+...+
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 68999 89999999999999999999988765 5899999999999999999999999999999999987543
No 75
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.82 E-value=2.9e-08 Score=78.33 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 64 NTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 64 ~~~l~V~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...|.|.||... +|.+.|..+|+.||.|.+|.|..+ +.-|+|.|.+...|+-|++.|+|..|.|++|+|.+++-+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 467888888765 999999999999999999999876 468999999999999999999999999999999999854
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=1.3e-08 Score=79.41 Aligned_cols=76 Identities=26% Similarity=0.559 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
-.+|||..+.++.++++|+.+|+.||+|..|.+.++ +||+||+|.+..+...|+..||-..++|.-|+|--+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 378999999999999999999999999999999774 79999999999999999999999999999999987664
Q ss_pred CC
Q 031309 138 PA 139 (161)
Q Consensus 138 ~~ 139 (161)
++
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 43
No 77
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=4.8e-08 Score=63.48 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=64.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc--cCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeC----CeEeEE
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG----KQSVRL 132 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~--~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~----g~~i~v 132 (161)
++|.|.|||...+.++|.+++.. .|....+.++.| .|||||.|.+.+.|......++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888864 356777777765 699999999999999999999999885 667899
Q ss_pred EeccCCC
Q 031309 133 SWGRNPA 139 (161)
Q Consensus 133 ~~a~~~~ 139 (161)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9998654
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=9.9e-09 Score=83.49 Aligned_cols=73 Identities=32% Similarity=0.492 Sum_probs=65.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
...-...+|+|-|||..+++++|+.+|+.||+|..|+.... +|.+||+|-+..+|+.|+++|++.++.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33445679999999999999999999999999999876543 79999999999999999999999999999888
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.77 E-value=3e-08 Score=79.81 Aligned_cols=75 Identities=31% Similarity=0.475 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC----C--CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~----~--~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
....|||.|||.+++..+|+++|..||.|....|.. + ..||||+|.+..+++.|+.+- -..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 345699999999999999999999999999877644 2 279999999999999999655 677899999999887
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 64
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=6.7e-08 Score=72.53 Aligned_cols=77 Identities=29% Similarity=0.509 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
...++|+|.|||..+.+++|+++|..||.+..+.+..+ .|.|-|.|...++|..|+..++|..++|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34478999999999999999999999998888877665 4899999999999999999999999999999998766
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
++
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 54
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.72 E-value=8.1e-08 Score=74.33 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK 127 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g 127 (161)
....+.|||.|||.++|.+++.++|+++|-|.. |.|.++ +|=|++.|...+++..|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 444677999999999999999999999997644 455443 6889999999999999999999999999
Q ss_pred eEeEEEeccCC
Q 031309 128 QSVRLSWGRNP 138 (161)
Q Consensus 128 ~~i~v~~a~~~ 138 (161)
+.|+|+-|+-+
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999988743
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.66 E-value=6.7e-08 Score=75.16 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
...+||++||.++++++++++|.+||.|..+.++.| ++|+||.|.+.+++++++ ..+-+.|.|+.+.|.-|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 459999999999999999999999999988888765 799999999999999987 6777899999999998887
Q ss_pred CCCc
Q 031309 138 PANK 141 (161)
Q Consensus 138 ~~~~ 141 (161)
+...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 6443
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.66 E-value=8.4e-08 Score=71.91 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=71.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+...+||+|+...++.++++..|..||.+..+.++.+ +||+||+|.+.+.+..++. |+|..+.|+.|.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 355677889999999999999889999999999988877664 6899999999999999996 999999999999
Q ss_pred EEeccCC
Q 031309 132 LSWGRNP 138 (161)
Q Consensus 132 v~~a~~~ 138 (161)
|.+.+.+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9987754
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.65 E-value=3.3e-08 Score=76.81 Aligned_cols=77 Identities=30% Similarity=0.521 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+.+++|||+|++.++++.|++.|.+||+|..+.++++ +||+||+|.+.+....++ ...-+.|+|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 6789999999999999999999999999999999885 699999999998888887 344577899999888777
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
+...
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 6543
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=4.7e-08 Score=71.46 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
..+.+|||+|+-..++|+-|.++|-..|+|.++.|+.+ ..||||.|.+.....-|++.+||..+.+..|.+.+...
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 44678999999999999999999999999999999875 25999999999999999999999999999888876553
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=4.5e-07 Score=67.69 Aligned_cols=76 Identities=29% Similarity=0.570 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....++.+||.|-|...++++.|...|.+|-......+++ ++||+||.|.+..++..|+..|+|..++.++|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 34456688999999999999999999999997554444444 379999999999999999999999999999988
Q ss_pred EE
Q 031309 132 LS 133 (161)
Q Consensus 132 v~ 133 (161)
++
T Consensus 264 lR 265 (290)
T KOG0226|consen 264 LR 265 (290)
T ss_pred hh
Confidence 75
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2.8e-06 Score=53.27 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=48.7
Q ss_pred cEEEEcCCCCCCCHHHH----HHHhcccC-CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 65 TTIFVGGLDPNVTDEDL----RQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l----~~~f~~~g-~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
..|||.|||.+.+...+ ++++..+| .|..|. .+.|+|.|.+.+.|..|...|+|-.+-|.+|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 46999999999987765 55666776 677763 68999999999999999999999999999999999853
No 88
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.26 E-value=1.2e-06 Score=64.49 Aligned_cols=63 Identities=30% Similarity=0.583 Sum_probs=54.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~--~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
..+|||.||..+++|++|+.+|+.|.....++|... ...||++|++.+.|..||..|.|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 468999999999999999999999987666666543 458999999999999999999998763
No 89
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.24 E-value=2.8e-06 Score=65.97 Aligned_cols=75 Identities=21% Similarity=0.576 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCCCHHH----H--HHHhcccCCeEEEEEeCC-------Cc--EEEEEecCHHHHHHHHHHhCCceeCC
Q 031309 63 SNTTIFVGGLDPNVTDED----L--RQPFSQYGEIASVKIPVG-------KG--CGFVQFANRENAEEALHKLNGTVIGK 127 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~----l--~~~f~~~g~v~~~~i~~~-------~g--~afv~f~~~~~a~~ai~~l~g~~~~g 127 (161)
...-+||-+||+.+..++ | .++|++||.|..|.+.+. .+ -.||+|.+.++|..||..++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345799999998866554 2 689999999999988763 13 24999999999999999999999999
Q ss_pred eEeEEEeccC
Q 031309 128 QSVRLSWGRN 137 (161)
Q Consensus 128 ~~i~v~~a~~ 137 (161)
+.|+..+...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999988764
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.21 E-value=4.3e-06 Score=55.28 Aligned_cols=70 Identities=34% Similarity=0.562 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCc-----eeCCeEeEEE
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-----VIGKQSVRLS 133 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~-----~~~g~~i~v~ 133 (161)
++.|.|.+++..++.++|++.|..||.|..|.+..+-.-|+|-|.+.++|+.|+..+... .+.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 356889999999999999999999999999999988889999999999999999877544 3445444443
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=1.6e-06 Score=63.98 Aligned_cols=72 Identities=26% Similarity=0.473 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+.+.+.|.+++..+.+.+|.+.|.++|.+....+ ..+++||+|...+++..|+..|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 456789999999999999999999999999855444 479999999999999999999999999999999954
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.14 E-value=2.5e-05 Score=57.52 Aligned_cols=79 Identities=20% Similarity=0.406 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEEec
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWG 135 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~i~v~~a 135 (161)
....++...+|+.|||..++.+.+..+|.+|.....+++... .+.|||+|.+...+..|...+.+..+. .+.++|.++
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 344567789999999999999999999999999999887764 689999999999999999999998776 888888876
Q ss_pred c
Q 031309 136 R 136 (161)
Q Consensus 136 ~ 136 (161)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 5
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=4.7e-06 Score=68.38 Aligned_cols=81 Identities=22% Similarity=0.472 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
........+||++||...++.++.+++..||.+....+..+ +||||.+|.+......|+..|||..+.++.|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 33455678999999999999999999999998887766553 799999999999999999999999999999999
Q ss_pred EeccCCC
Q 031309 133 SWGRNPA 139 (161)
Q Consensus 133 ~~a~~~~ 139 (161)
..|-...
T Consensus 364 q~A~~g~ 370 (500)
T KOG0120|consen 364 QRAIVGA 370 (500)
T ss_pred ehhhccc
Confidence 9887543
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.02 E-value=5.6e-05 Score=59.58 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 59 EGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
....+++.+.|-+|... ++.+.|..+|..||.|.+|.+++. .|-|.|++.+..+.+.|+..||+..+-|.+|.|.+++
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 44566788999999877 788999999999999999998876 5899999999999999999999999999999998887
Q ss_pred C
Q 031309 137 N 137 (161)
Q Consensus 137 ~ 137 (161)
.
T Consensus 362 Q 362 (494)
T KOG1456|consen 362 Q 362 (494)
T ss_pred c
Confidence 4
No 95
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=0.0004 Score=50.00 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=60.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
++......+|.|.+||...+|++|+++..+-|.|+...+.+| |++.|+|...++.+-|+..|+...+.
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 344556789999999999999999999999999999988875 79999999999999999999887663
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.87 E-value=9.6e-05 Score=59.99 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..+..-|-+.+||+.+|+++|.++|+.+ .|..+.+.+. .|-|||+|.+.++++.|+ +.+...+..+-|.|--+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccC
Confidence 4455677888999999999999999998 4777777664 589999999999999999 677778888888886654
Q ss_pred C
Q 031309 137 N 137 (161)
Q Consensus 137 ~ 137 (161)
.
T Consensus 85 ~ 85 (510)
T KOG4211|consen 85 G 85 (510)
T ss_pred C
Confidence 3
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=4.7e-05 Score=43.97 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=43.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHH
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEAL 117 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai 117 (161)
+.|-|.+++....+. +..+|..||+|..+.+.....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 357788888877655 4558889999999998877899999999999999885
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.76 E-value=0.00012 Score=58.30 Aligned_cols=77 Identities=22% Similarity=0.420 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEE--EEeCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV--KIPVGKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~--~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~i~v~~a~~~ 138 (161)
++..++.+.|+|..++|++++..|..-|...+. ....++.++++.+.+.|.|..|+..+|.+.+. +..|+|+|+++.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 456689999999999999999999988866554 33557899999999999999999999999987 558999998853
No 99
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.70 E-value=0.00028 Score=46.13 Aligned_cols=72 Identities=28% Similarity=0.377 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEE-------------EeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-------------IPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~-------------i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
..+-|.|-++|+... ..+.+.|++||.|.+.. +.....+-.|.|.++.+|.+|+ .-||..+.|..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 345688889999854 55778999999998875 4555789999999999999999 78999998864
Q ss_pred -eEEEecc
Q 031309 130 -VRLSWGR 136 (161)
Q Consensus 130 -i~v~~a~ 136 (161)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4566664
No 100
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.68 E-value=9.3e-05 Score=57.88 Aligned_cols=79 Identities=28% Similarity=0.369 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
.....+|||-+||..+++.+|.++|.++|.|.. |.|-++ ++-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455679999999999999999999999986633 333222 689999999999999999999999999
Q ss_pred CeEeEEEeccCCC
Q 031309 127 KQSVRLSWGRNPA 139 (161)
Q Consensus 127 g~~i~v~~a~~~~ 139 (161)
|..|+|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887543
No 101
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.67 E-value=2.5e-05 Score=58.57 Aligned_cols=67 Identities=27% Similarity=0.467 Sum_probs=58.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--------------C----cEEEEEecCHHHHHHHHHHhCCce
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------------K----GCGFVQFANRENAEEALHKLNGTV 124 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~--------------~----g~afv~f~~~~~a~~ai~~l~g~~ 124 (161)
....||+++||+.++..-|+++|+.||.|-+|.+-.. + .-|.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999999988542 0 126789999999999999999999
Q ss_pred eCCeE
Q 031309 125 IGKQS 129 (161)
Q Consensus 125 ~~g~~ 129 (161)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 102
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.66 E-value=2.4e-05 Score=64.05 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=68.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
+.+.+..++|+--|+...++.+|.++|+.+|.|..|.++.| +|.+||+|.+.+.+..|| .|.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 33445678888888888999999999999999999999886 699999999999999999 99999999999999
Q ss_pred Eecc
Q 031309 133 SWGR 136 (161)
Q Consensus 133 ~~a~ 136 (161)
....
T Consensus 253 q~sE 256 (549)
T KOG0147|consen 253 QLSE 256 (549)
T ss_pred cccH
Confidence 7654
No 103
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00034 Score=57.87 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=60.7
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeC-CeE
Q 031309 62 SSNTTIFVGGLDPNVTD------EDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG-KQS 129 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~------~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~ 129 (161)
.-+..|+|.|+|-.-.. ..|..+|+++|++..+.++.+ +||.|++|.+..+|+.|+..|||+.|+ +++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 44678999999875432 235788999999999998864 799999999999999999999999886 777
Q ss_pred eEEEec
Q 031309 130 VRLSWG 135 (161)
Q Consensus 130 i~v~~a 135 (161)
..|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777543
No 104
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.63 E-value=5.6e-05 Score=62.66 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=65.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcc-cCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCcee---CCeEeEEEec
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI---GKQSVRLSWG 135 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~---~g~~i~v~~a 135 (161)
.....+.|||.||-.-.|..+|+.++.. .|.|...+|..-+..|||.|.+.++|.....+|||..| +++.|.+.|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 4566789999999999999999999994 55676665444478999999999999999999999988 4778888776
Q ss_pred cC
Q 031309 136 RN 137 (161)
Q Consensus 136 ~~ 137 (161)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 53
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.62 E-value=0.00015 Score=62.73 Aligned_cols=79 Identities=23% Similarity=0.486 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeC--CeEeEEEeccC
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRN 137 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~--g~~i~v~~a~~ 137 (161)
.....+.+|+++|+.++....|...|..||.|..|.+-....|++|.|.+...++.|++.+-|..|+ .+.|+|.++.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 4556789999999999999999999999999999988777789999999999999999999999987 45799999886
Q ss_pred C
Q 031309 138 P 138 (161)
Q Consensus 138 ~ 138 (161)
.
T Consensus 531 ~ 531 (975)
T KOG0112|consen 531 P 531 (975)
T ss_pred C
Confidence 4
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.62 E-value=0.00047 Score=54.53 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=63.9
Q ss_pred CCcEEEEcCC--CCCCCHHHHHHHhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCceeC-Ce-EeEEEeccC
Q 031309 63 SNTTIFVGGL--DPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIG-KQ-SVRLSWGRN 137 (161)
Q Consensus 63 ~~~~l~V~nl--p~~~~~~~l~~~f~~~g~v~~~~i~~~~-g~afv~f~~~~~a~~ai~~l~g~~~~-g~-~i~v~~a~~ 137 (161)
....|.+.=| -+-++-+.|..+....|+|.+|.|.+.. --|.|+|.+.+.|++|..+|||..|. |. +|+|++|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3344544434 3448889999999999999999887654 47999999999999999999999875 43 899999998
Q ss_pred CCCccC
Q 031309 138 PANKQA 143 (161)
Q Consensus 138 ~~~~~~ 143 (161)
......
T Consensus 199 ~rlnV~ 204 (494)
T KOG1456|consen 199 TRLNVQ 204 (494)
T ss_pred ceeeee
Confidence 655433
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.60 E-value=0.00026 Score=58.34 Aligned_cols=55 Identities=31% Similarity=0.556 Sum_probs=47.9
Q ss_pred HHHhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 82 RQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 82 ~~~f~~~g~v~~~~i~~~---------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+.-+++||.|..|.++++ -|..||+|.+.++++.|+.+|+|..+.|+.+...|-.
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 344578999999999875 3778999999999999999999999999999888754
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.53 E-value=0.00047 Score=56.08 Aligned_cols=71 Identities=27% Similarity=0.435 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~-~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
..+..|=+++||+.|++++|.++|+..--+.. +.++.+ .|-|||.|.+.+.|++|+ .-|...|..+-|.|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEee
Confidence 45678889999999999999999997643333 334443 478999999999999999 455566667767664
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.41 E-value=0.00019 Score=55.57 Aligned_cols=77 Identities=34% Similarity=0.578 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
....+|++++..+++++|+..|..+|.|..++++.. +|+++|.|.+...+..++.. ....+.++++.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 344449999999999999999999999999988764 68999999999999999876 78889999999999887
Q ss_pred CCCc
Q 031309 138 PANK 141 (161)
Q Consensus 138 ~~~~ 141 (161)
.+..
T Consensus 264 ~~~~ 267 (285)
T KOG4210|consen 264 RPKS 267 (285)
T ss_pred Cccc
Confidence 6444
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.40 E-value=0.0009 Score=52.36 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=62.1
Q ss_pred CCCCCCCcEEEEcCCCC----CCC-------HHHHHHHhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCce
Q 031309 58 SEGDSSNTTIFVGGLDP----NVT-------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTV 124 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~----~~~-------~~~l~~~f~~~g~v~~~~i~~--~~g~afv~f~~~~~a~~ai~~l~g~~ 124 (161)
.......++|.+.|+=. ..+ .++|.+-..+||.|.+|.+.- ..|.+-|.|.+.++|+.||..|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 33455667888888732 223 234455578999999998763 36999999999999999999999999
Q ss_pred eCCeEeEEEeccC
Q 031309 125 IGKQSVRLSWGRN 137 (161)
Q Consensus 125 ~~g~~i~v~~a~~ 137 (161)
++|+.|..+.-..
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999999887553
No 111
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.29 E-value=0.00034 Score=54.87 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccC--CeEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
......+|||||-+++++++|.+.+-..| .+.++++.. ++|||+|...+..+.++.|+.|.-.+|+|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34456799999999999999988887666 444444332 3799999999999999999999999999885444
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.21 E-value=0.00056 Score=54.85 Aligned_cols=62 Identities=29% Similarity=0.396 Sum_probs=53.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-------------------CcEEEEEecCHHHHHHHHHHhCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------------------KGCGFVQFANRENAEEALHKLNG 122 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-------------------~g~afv~f~~~~~a~~ai~~l~g 122 (161)
-...+|.+-|||.+-.-+.|.++|+.+|.|..|+|... +-||+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999777889999999999999998542 45899999999999999988855
Q ss_pred c
Q 031309 123 T 123 (161)
Q Consensus 123 ~ 123 (161)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0018 Score=53.04 Aligned_cols=59 Identities=25% Similarity=0.508 Sum_probs=46.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC---------CCc---EEEEEecCHHHHHHHHHHh
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKG---CGFVQFANRENAEEALHKL 120 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~---------~~g---~afv~f~~~~~a~~ai~~l 120 (161)
..-..+||||+||++++|+.|...|..||.+.- ..+. .+| |+|+.|+++..+..-+.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 344678999999999999999999999997532 2331 146 9999999988887776554
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0029 Score=44.01 Aligned_cols=55 Identities=27% Similarity=0.488 Sum_probs=45.4
Q ss_pred HHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 80 DLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 80 ~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
+|.+.|..||.+.-+++. .+.-.|+|.+-+.|.+|+ .++|..+.|+.|+|++..+
T Consensus 52 ~ll~~~~~~GevvLvRfv--~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV--GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE--TTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEe--CCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 567788899998888877 467899999999999999 8999999999999987654
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.98 E-value=0.00056 Score=54.88 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=58.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCc-eeCCeEeEEEeccCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT-VIGKQSVRLSWGRNP 138 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~-~~~g~~i~v~~a~~~ 138 (161)
..+|++||.+..+..+|+.+|+...--..-.++...||+||++.+..-|.+|++.++|. ++.|+++.|+..-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 36899999999999999999975421111122223699999999999999999999995 589999999887654
No 116
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.96 E-value=0.0015 Score=53.01 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=67.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCC-HHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 57 QSEGDSSNTTIFVGGLDPNVT-DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~-~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
......+.+.|-+.-.|..++ .++|...|.+||.|..|.+...--.|.|+|.+..+|-.|. ..++..|+++.|+|.|-
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 334445556777777888755 5899999999999999988665578999999999997776 78999999999999999
Q ss_pred cCCC
Q 031309 136 RNPA 139 (161)
Q Consensus 136 ~~~~ 139 (161)
.+.+
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8743
No 117
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.91 E-value=0.0091 Score=37.55 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=45.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG 122 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g 122 (161)
..++.+||+ +|......+|.++|++||.|.--.|. -.-|||....++.|..++..+.-
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhcc
Confidence 345677787 99999999999999999998766554 57799999999999999988863
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0047 Score=50.69 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=53.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhc-ccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHH
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG------KGCGFVQFANRENAEEALHK 119 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~-~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~ 119 (161)
.....+..+||||+||.-++-++|-.+|. -||.|+-+-|..| +|-|-|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33455678999999999999999999998 7999999888776 68899999999999888853
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.75 E-value=0.00075 Score=50.73 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=46.0
Q ss_pred HHHhc-ccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 82 RQPFS-QYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 82 ~~~f~-~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
...|. +||+|..+.+-.+ .|-++|.|...++|++|+..||+.-+.|++|..++.-
T Consensus 86 f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 86 FTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 33344 8999988865443 5789999999999999999999999999999998764
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.75 E-value=0.0078 Score=51.29 Aligned_cols=70 Identities=27% Similarity=0.350 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCe-EEEEEeC-C----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPV-G----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v-~~~~i~~-~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
+.|-+.|+|++++-++|-++|.-|-.+ .+|.+.. | .|-|.|.|++.++|..|...|++..|..+++.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378899999999999999999998533 2233332 2 58899999999999999999999999999988764
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.65 E-value=0.0069 Score=46.65 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=47.0
Q ss_pred HHHHHhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 80 DLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 80 ~l~~~f~~~g~v~~~~i~~~-------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
++++-.++||.|..|.|... .---||+|...+.|.+|+--|||..|+|+.+...|-.
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45666789999998877543 2357999999999999999999999999998877644
No 122
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.52 E-value=0.013 Score=42.65 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=48.8
Q ss_pred CHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhC--CceeCCeEeEEEeccCC
Q 031309 77 TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 77 ~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~--g~~~~g~~i~v~~a~~~ 138 (161)
....|+.+|..++.+..+...++-+-..|.|.+.++|..|...|+ +..+.|..++|-++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999999999888888899999999999999999999 89999999999998643
No 123
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.39 E-value=0.0092 Score=43.06 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcc-cCCe---EEEE--EeCC------CcEEEEEecCHHHHHHHHHHhCCceeC---
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEI---ASVK--IPVG------KGCGFVQFANRENAEEALHKLNGTVIG--- 126 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~g~v---~~~~--i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~--- 126 (161)
....+|.|++||++++++++.+.+.. ++.- ..+. .... ...|||.|.+.+++......++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44568999999999999999987776 5554 2222 1110 367999999999999999999998873
Q ss_pred Ce--EeEEEecc
Q 031309 127 KQ--SVRLSWGR 136 (161)
Q Consensus 127 g~--~i~v~~a~ 136 (161)
|. .-.|++|-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 22 45666664
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.37 E-value=0.0077 Score=48.05 Aligned_cols=67 Identities=19% Similarity=0.392 Sum_probs=55.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
.|-|.||.+.++.++++.+|+..|.|..+.|..+ ...|||.|.+...+..|- .|....+-++.|.|.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEE
Confidence 7999999999999999999999999999987552 468999999999888886 566666666655554
No 125
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.33 E-value=0.0025 Score=53.66 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 55 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 55 ~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.+....-++..++||+|+...+..+.+..++..+|-|..+... .|+|..|........|+..++-..++|..+.+..
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3444455667899999999999999999999999988887654 2999999999999999999999999888776654
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.20 E-value=0.001 Score=57.76 Aligned_cols=75 Identities=27% Similarity=0.523 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.....+||+|||+..+++.+|+..|..+|.|..|.|... -.|+||.|.+...+..|...+.+..|....+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 344679999999999999999999999999999988653 469999999999999999899998886555555555
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.09 E-value=0.002 Score=50.20 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCCCCCHH-HH--HHHhcccCCeEEEEEeCCC---------cEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 62 SSNTTIFVGGLDPNVTDE-DL--RQPFSQYGEIASVKIPVGK---------GCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~-~l--~~~f~~~g~v~~~~i~~~~---------g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
....-+||-+|+.....+ .| .+.|++||.|..+.+..+. .-++|+|...++|..||...+|..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 445678999999886544 44 4779999999999876632 23799999999999999999999999998
Q ss_pred eEEEeccCC
Q 031309 130 VRLSWGRNP 138 (161)
Q Consensus 130 i~v~~a~~~ 138 (161)
|+..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776654
No 128
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.90 E-value=0.14 Score=34.06 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=45.1
Q ss_pred cEEEEcCCCCC-CCHHHHHHHhcccC-CeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 65 TTIFVGGLDPN-VTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 65 ~~l~V~nlp~~-~~~~~l~~~f~~~g-~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
..+.|-..|+. ++.++|..+.+.+- .|..++|.++ +-.+++.|.+.++|+.....+||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444445555 55566665555543 6778888886 447899999999999999999999875
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.90 E-value=0.017 Score=46.09 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=57.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccC-CeEE--EEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIAS--VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g-~v~~--~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...|=+++||+..+.++|.++|..|. .|.. |++..+ .|-|||+|.+.++|..|....|.+..+++-|.|-.+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 45688899999999999999998886 3333 444332 588999999999999999888887777888877543
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.87 E-value=0.064 Score=31.86 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccc---CCeEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPVGKGCGFVQFANRENAEEALHKL 120 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~---g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l 120 (161)
..|+|.++.. ++.++|+.+|..| .....|..+.| .-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 4799999854 6678899999888 23456766654 55778899999999998764
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=0.068 Score=41.43 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeE-eEEEe
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-VRLSW 134 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~-i~v~~ 134 (161)
+.=|=|-++|..-. ..+...|.+||.|++.....+..+-+|.|.++.+|++|| ..+|..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeee
Confidence 44455667777654 456788999999999887766789999999999999999 68999998764 44544
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.81 E-value=0.076 Score=36.87 Aligned_cols=76 Identities=28% Similarity=0.376 Sum_probs=58.5
Q ss_pred CCCCCCcEEEEcCCCCCCCH-HHH---HHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 59 EGDSSNTTIFVGGLDPNVTD-EDL---RQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~-~~l---~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+++-.+|.|+=|..++.. +++ ...++.||+|.+|.+. ++.-|.|.|.+..+|=.|+.+++. ..-|.-+++.|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34556678889877777654 344 4556889999998653 578899999999999999999886 55677888888
Q ss_pred cc
Q 031309 135 GR 136 (161)
Q Consensus 135 a~ 136 (161)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 65
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.80 E-value=0.0059 Score=52.96 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCcee--CCeEeEEEeccCCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPA 139 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~--~g~~i~v~~a~~~~ 139 (161)
.+.++.|.+-+.+...|..++..||.|...+..++-..|.|+|.+.+.|..|.++|+|+++ .|-+.+|.+|+.-+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3455666777788888999999999999999998889999999999999999999999986 48899999998643
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.74 E-value=0.085 Score=32.37 Aligned_cols=67 Identities=27% Similarity=0.442 Sum_probs=39.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHhcccC-----CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 66 TIFVG-GLDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 66 ~l~V~-nlp~~~~~~~l~~~f~~~g-----~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
++||. +=-..++..+|-.++...+ .|-.+.+. ..|+||+... +.+..++..|++..+.|++++|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45553 2234588888888887654 46667766 5788888875 4888999999999999999999865
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.44 E-value=0.03 Score=46.47 Aligned_cols=52 Identities=15% Similarity=0.322 Sum_probs=40.5
Q ss_pred cCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeC----CeEeEEEeccCCC
Q 031309 88 YGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG----KQSVRLSWGRNPA 139 (161)
Q Consensus 88 ~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~----g~~i~v~~a~~~~ 139 (161)
.|.-..+.++.| .|||||.|.+.+++..+.++.||..|. .+...+.||+-+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 344455566554 599999999999999999999999864 4567788888664
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.22 E-value=0.0092 Score=51.76 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
...++|.|.|+..|.++++.++.++|.+..+.++.. +|-++|.|.+..++..++...+...+....+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 467999999999999999999999999888876543 68999999999999999988888777766666666444
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.82 E-value=0.038 Score=47.33 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEeC---C--CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPV---G--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~-~~i~~---~--~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+..|||..||..+++..+-++|.....|++ |.|.. + ++.|||.|...+++..|...-+...+..+.|+|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34678999999999999999999987766666 55543 3 58999999998888888766666667788899863
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.74 E-value=0.034 Score=42.05 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=49.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNG 122 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g 122 (161)
..|||.||+..++.+.++..|+.||+|....+..| .+-++|.|...-.+..|......
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 67999999999999999999999999887655543 36789999999999999987743
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.70 E-value=0.073 Score=44.48 Aligned_cols=72 Identities=10% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcc--cCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--ceeCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~--~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g--~~~~g~~i~v~ 133 (161)
.-..+.|.++-||..+-.++++.+|.. +-.+..|.+.-+- -=||+|++..||+.|...|.. ++|.|+.|..+
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 344678999999999999999999974 5677777664332 248999999999999988744 46777766544
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.44 E-value=0.41 Score=38.50 Aligned_cols=55 Identities=33% Similarity=0.393 Sum_probs=40.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccc----CCeEEE-EEeC--C--CcEEEEEecCHHHHHHHHHH
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQY----GEIASV-KIPV--G--KGCGFVQFANRENAEEALHK 119 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~----g~v~~~-~i~~--~--~g~afv~f~~~~~a~~ai~~ 119 (161)
-.|=.++||+++++.++.++|..- |....| .+.+ + .|-|||.|...++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 345567999999999999999632 223333 3333 2 48899999999999999843
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.21 E-value=0.16 Score=41.50 Aligned_cols=64 Identities=16% Similarity=0.303 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGK 127 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g 127 (161)
+..|+|-.+|..++..+|-.+...+- .|..++++++ +-..+|.|.+.++|......+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999998888764 7888888875 4568999999999999999999998753
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.72 E-value=0.0032 Score=54.45 Aligned_cols=63 Identities=33% Similarity=0.535 Sum_probs=50.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe----CC--CcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP----VG--KGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~----~~--~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
-.++||.||+..+.+.+|...|..+|.+..+++. .+ +|+||+.|...+++.+|+....+..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3579999999999999999999999876665443 12 799999999999999999554444433
No 143
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.46 E-value=2.3 Score=33.05 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=37.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCe-EEEEEeCCCcEEEEEecCH
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVGKGCGFVQFANR 110 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v-~~~~i~~~~g~afv~f~~~ 110 (161)
.+-||++||+.++.-.+|+..+.+.+.+ .++.....+|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 3569999999999999999999887743 4455555578999999875
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.03 E-value=3.5 Score=35.02 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=58.7
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhccc----CCeEEEEEeCC------------------------------------
Q 031309 61 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPVG------------------------------------ 99 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~----g~v~~~~i~~~------------------------------------ 99 (161)
.....+|-|-||.+. +...+|..+|+.| |.|.+|.|..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455678999999998 7888999998876 47888777321
Q ss_pred -----------------CcEEEEEecCHHHHHHHHHHhCCceeC--CeEeEEEe
Q 031309 100 -----------------KGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSW 134 (161)
Q Consensus 100 -----------------~g~afv~f~~~~~a~~ai~~l~g~~~~--g~~i~v~~ 134 (161)
.-||.|+|.+.+.|.......+|.++. +..|.++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 137999999999999999999999986 44555554
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.18 E-value=4.7 Score=24.21 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=42.6
Q ss_pred CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 75 NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 75 ~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.++-.+++..+.+|+- ..|. .++.-=||.|.+..+|+++....+|..+-+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677889999999963 3333 34555689999999999999999999887766654
No 146
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=85.09 E-value=0.79 Score=33.11 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=56.0
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCe-EeEEEeccCC
Q 031309 65 TTIFVGGLDPNVT-----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRLSWGRNP 138 (161)
Q Consensus 65 ~~l~V~nlp~~~~-----~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~i~v~~a~~~ 138 (161)
..+++-+++..+- ....+.+|..|.+....++.++.+...|.|.+.+.|..|...+++..+.|+ .++.-++.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 4466666665522 223466777777766667776778888999999999999999999999988 8888887754
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=81.86 E-value=0.048 Score=44.15 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=60.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-CC--cEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GK--GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~-~~--g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...+-|.|+|+...++.|..++..||.+..+.... +. ...-|+|...+.+..||..|+|..+....++|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 45699999999999999999999999998885433 32 34457889999999999999999999988888763
No 148
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=77.53 E-value=2.9 Score=32.56 Aligned_cols=73 Identities=23% Similarity=0.255 Sum_probs=54.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
....++|++++...+.+.+...++..+|.+....+.. .++++.+.|...+.+..++.......+.+..+...+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 4567899999999999988888888888666654433 279999999999999999954333455555444433
No 149
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.58 E-value=11 Score=29.54 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=56.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC-------------cEEEEEecCHHHHHHHHH----HhCC-
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-------------GCGFVQFANRENAEEALH----KLNG- 122 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~-------------g~afv~f~~~~~a~~ai~----~l~g- 122 (161)
.-..+.|.+.|+...++--.+-..|-+||+|+.|.+..+. ....+.|-+++.|..... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3445678899999999888888889999999999987653 567889999988876543 2222
Q ss_pred -ceeCCeEeEEEecc
Q 031309 123 -TVIGKQSVRLSWGR 136 (161)
Q Consensus 123 -~~~~g~~i~v~~a~ 136 (161)
..+....|.|.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 23556667777654
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.87 E-value=15 Score=30.03 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCC-eEEEEEeCCCcEEEEEecCHHHHHHHHHH
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALHK 119 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~-v~~~~i~~~~g~afv~f~~~~~a~~ai~~ 119 (161)
-.+.|-|-++|.....++|...|+.|+. -..|.++ +.-.+|..|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 4678999999999888889999999974 3344333 567899999999999999843
No 151
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=65.03 E-value=11 Score=30.42 Aligned_cols=61 Identities=21% Similarity=0.415 Sum_probs=45.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCC-eEEEEEe-CC-------CcEEEEEecCHHHHHHHHHHhCCcee
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-VG-------KGCGFVQFANRENAEEALHKLNGTVI 125 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~-v~~~~i~-~~-------~g~afv~f~~~~~a~~ai~~l~g~~~ 125 (161)
..|-|.+||+.+++.++.+-+.++-. +....+. .+ .+.++|.|...++.......++|+++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46889999999999988877777642 2222222 11 47899999999998888888898875
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.23 E-value=26 Score=20.77 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=16.1
Q ss_pred HHHHHHhcccCCeEEEEEe
Q 031309 79 EDLRQPFSQYGEIASVKIP 97 (161)
Q Consensus 79 ~~l~~~f~~~g~v~~~~i~ 97 (161)
++|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999999887764
No 153
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.99 E-value=2.7 Score=35.56 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=53.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
.+++|+.|++++++-++|+.++..+..+.++.+..+ ..++.|.|.--.....|+.+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 467999999999999999999998877777665443 357788998888888888899988775543
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=53.76 E-value=14 Score=30.19 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=43.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCH-HHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 55 GPQSEGDSSNTTIFVGGLDPNVTD-EDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 55 ~~~~~~~~~~~~l~V~nlp~~~~~-~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
..+........+.||+++...+.. ++....|-..+.+..|....+ .-+||+.|.+...+..++ ..+|..+...+
T Consensus 43 ~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll-~pdg~Lp~~~~ 121 (479)
T KOG4676|consen 43 VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLL-PPDGVLPGDRP 121 (479)
T ss_pred CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCccccccccc-CCCCccCCCCc
Confidence 334444556689999999887544 443333333333333322221 345888888776666655 45666555556
Q ss_pred eEEE
Q 031309 130 VRLS 133 (161)
Q Consensus 130 i~v~ 133 (161)
|...
T Consensus 122 lt~~ 125 (479)
T KOG4676|consen 122 LTKI 125 (479)
T ss_pred cccc
Confidence 5443
No 155
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.04 E-value=9.6 Score=29.65 Aligned_cols=75 Identities=28% Similarity=0.584 Sum_probs=51.1
Q ss_pred cEEEEcCCCCC------------CCHHHHHHHhcccCCeEEEEEeCC----------------CcE---------EEEEe
Q 031309 65 TTIFVGGLDPN------------VTDEDLRQPFSQYGEIASVKIPVG----------------KGC---------GFVQF 107 (161)
Q Consensus 65 ~~l~V~nlp~~------------~~~~~l~~~f~~~g~v~~~~i~~~----------------~g~---------afv~f 107 (161)
.+||+.+||-. .++.-|...|..||.|..|.|+.- .|| |||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 46888888732 456779999999999999988651 233 34566
Q ss_pred cCHHHHHHHHHHhCCcee----CCe----EeEEEeccCCC
Q 031309 108 ANRENAEEALHKLNGTVI----GKQ----SVRLSWGRNPA 139 (161)
Q Consensus 108 ~~~~~a~~ai~~l~g~~~----~g~----~i~v~~a~~~~ 139 (161)
...-.-..||.+|.|..+ +|. .++|.+.++..
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 666666778888877654 233 46777776543
No 156
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.01 E-value=14 Score=23.57 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFS 86 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~ 86 (161)
....++|-|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 45567899999999999999886543
No 157
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.92 E-value=26 Score=27.34 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=25.8
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 103 GFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 103 afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
|||+|.+..+|+.+.+.+.... ++.+.++.|-.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999998655444 3455777765443
No 158
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=43.06 E-value=61 Score=20.09 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=24.5
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCce
Q 031309 90 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV 124 (161)
Q Consensus 90 ~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~ 124 (161)
.|.++..+.+ +||-||+=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5666665554 8999999999999999997776544
No 159
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.76 E-value=26 Score=23.46 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=22.7
Q ss_pred EEEEcCCCC---------CCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHH
Q 031309 66 TIFVGGLDP---------NVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRE 111 (161)
Q Consensus 66 ~l~V~nlp~---------~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~ 111 (161)
.+.|-|++. .++.+.|.+.|..|.++.-..+... .|+++|.|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 455666643 2456789999999987654333332 589999998543
No 160
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=37.19 E-value=79 Score=17.77 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=38.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCH----HHHHHHHH
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANR----ENAEEALH 118 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~----~~a~~ai~ 118 (161)
++.|.|+.=..-...++..+...-.|..+.+....+-.-|.|... ++...+++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 356666655555677888898888899998888788888888744 44555554
No 161
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.41 E-value=71 Score=19.07 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.7
Q ss_pred cEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 101 GCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 101 g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
.+.+|.|.+..+|.+|-+.|...-+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46889999999999998887665443
No 162
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=32.26 E-value=12 Score=29.89 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHHHHhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCc
Q 031309 79 EDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGT 123 (161)
Q Consensus 79 ~~l~~~f~~~g~v~~~~i~~--~~g~afv~f~~~~~a~~ai~~l~g~ 123 (161)
..+.+++.+.|.|..-.+.+ +.|.+||..-..+++++++..|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 44566667777665544433 4688999999999999999998865
No 163
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=29.66 E-value=1.5e+02 Score=19.02 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHhcccC-CeEEEEEeCC--CcEEEEEecCHHHHHHHHHHhCC
Q 031309 72 LDPNVTDEDLRQPFSQYG-EIASVKIPVG--KGCGFVQFANRENAEEALHKLNG 122 (161)
Q Consensus 72 lp~~~~~~~l~~~f~~~g-~v~~~~i~~~--~g~afv~f~~~~~a~~ai~~l~g 122 (161)
+.+.+++..|..-|-.-| +-....+.+| +.+|.|+|.+.+.+..|...|-.
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 445566666655554444 2222233444 68999999999999999877643
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.03 E-value=34 Score=25.99 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 95 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~ 95 (161)
.....+|+-|+|..++++.|..+.+..|-+..+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3445799999999999999999999988554443
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=28.70 E-value=1.2e+02 Score=19.24 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe---CCCcEEEEEec
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP---VGKGCGFVQFA 108 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~---~~~g~afv~f~ 108 (161)
-||||+++..+.+.-.+.+....+.-.-+-+. ...||.|-.+.
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 49999999888876555555533332222222 23688887763
No 166
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=28.16 E-value=1.2e+02 Score=18.10 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHhcccC-CeEEEEEeCCC------cEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 79 EDLRQPFSQYG-EIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 79 ~~l~~~f~~~g-~v~~~~i~~~~------g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
++|.+.|...| +|..+.-+..+ ..-||+.....+ ..+.++=..+.+..+.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 45677777777 67777654432 466777765443 2234566677888889887764
No 167
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.53 E-value=44 Score=17.49 Aligned_cols=16 Identities=13% Similarity=0.437 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhcccC
Q 031309 74 PNVTDEDLRQPFSQYG 89 (161)
Q Consensus 74 ~~~~~~~l~~~f~~~g 89 (161)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998764
No 168
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.24 E-value=1.4e+02 Score=25.21 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=42.5
Q ss_pred EEcCCCCCCCH---HHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 68 FVGGLDPNVTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 68 ~V~nlp~~~~~---~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
+||||+.-... ..+..+=.+||+|-.+++. ..-.|...+.+.|+.++ .-++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG---~~~~Vviss~~~akE~l-~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG---SVPVVVISSYEAAKEVL-VKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec---CceEEEECCHHHHHHHH-HhCCccccCCCC
Confidence 47777655333 4455555689999988874 33577888999999998 567888888775
No 169
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.08 E-value=1.7e+02 Score=18.05 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=37.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhcc-cC-CeEEEEEeC---CCcEEEEEecCHHHHHHHHH
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALH 118 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~-~g-~v~~~~i~~---~~g~afv~f~~~~~a~~ai~ 118 (161)
.-|+..++...+..+|+..++. || .|..+.... +..-|||.+..-.+|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3566668889999999988876 55 666664332 34569999987777766543
No 170
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.67 E-value=1e+02 Score=16.93 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCe
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEI 91 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v 91 (161)
..+|+.+.....+..+|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877678889999999998863
No 171
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.62 E-value=1.1e+02 Score=18.34 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=26.2
Q ss_pred CCCCCCCH-HHHHHHhcccC-CeEEEEEeCCCcEEEEEecC
Q 031309 71 GLDPNVTD-EDLRQPFSQYG-EIASVKIPVGKGCGFVQFAN 109 (161)
Q Consensus 71 nlp~~~~~-~~l~~~f~~~g-~v~~~~i~~~~g~afv~f~~ 109 (161)
|-|..+.- .+|-.+.-.|| .|.+-.+..|..+|||.|.-
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wV 46 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWV 46 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEE
Confidence 55555442 45666666677 66776777777899999863
No 172
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=25.08 E-value=2.2e+02 Score=20.41 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=33.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG 99 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~ 99 (161)
........+++++++..+....+...|..+|.+....+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 33455678999999999999999999999999877666543
No 173
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=23.54 E-value=1.7e+02 Score=17.31 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=34.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecC
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 109 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~ 109 (161)
.+.|.++.=..-...++..+.....+..+.+....+-+.|.|.+
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 46666665454456788888888889999888888889999998
No 174
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.37 E-value=1.7e+02 Score=17.30 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=30.3
Q ss_pred HHHHHHhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHHhC
Q 031309 79 EDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLN 121 (161)
Q Consensus 79 ~~l~~~f~~~g~v~~~~i~~~--~g~afv~f~~~~~a~~ai~~l~ 121 (161)
.++.+.+..+| +.-..+.-. .++.|+-+.+.+.++.+.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34566667788 555566655 6788888889999888887663
No 175
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.36 E-value=1.3e+02 Score=23.14 Aligned_cols=29 Identities=17% Similarity=0.043 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEE
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIAS 93 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~ 93 (161)
....|+|||++++-.-+..++...-.+..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~ 124 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQD 124 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccce
Confidence 45779999999999988888876444433
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=23.10 E-value=47 Score=25.55 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCceeCCeEeEEEeccCCCCccCCCCCCCCccc
Q 031309 110 RENAEEALHKLNGTVIGKQSVRLSWGRNPANKQASLSPFTSSTQ 153 (161)
Q Consensus 110 ~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~ 153 (161)
...|..|-..|++....|+.++|.|+-.........+++.++..
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndl 47 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDL 47 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHH
Confidence 44677777889999999999999998765445566666665543
No 177
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=23.03 E-value=2e+02 Score=18.00 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-CeEEEEEeC---CCcEEEEEecCHHHHHHHHHH
Q 031309 67 IFVGGLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANRENAEEALHK 119 (161)
Q Consensus 67 l~V~nlp~~~~~~~l~~~f~~-~g-~v~~~~i~~---~~g~afv~f~~~~~a~~ai~~ 119 (161)
-|+--.+...+..+|+..++. || .|..|.... +..=|||.+..-.+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 455557788999999888876 66 666665432 335699999887777766443
No 178
>PF14893 PNMA: PNMA
Probab=22.84 E-value=62 Score=25.88 Aligned_cols=23 Identities=9% Similarity=0.407 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFS 86 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~ 86 (161)
-+.|.|.+||.++++++|++.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 35688999999999999987764
No 179
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=95 Score=26.49 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=35.2
Q ss_pred CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 100 KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 100 ~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
..|+++.|++...+.+|+..++|..+.+..+++..+....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 5899999999999999999999999998888887776543
No 180
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=21.47 E-value=1.4e+02 Score=18.04 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHhcccC-CeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 79 EDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 79 ~~l~~~f~~~g-~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
++|++.|...| ++..+.-+.. ...-+|+.....+... .|+=..++|+.+.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 7777765543 1355666654432222 455566788888887544
Done!