Query 031309
Match_columns 161
No_of_seqs 154 out of 1733
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 19:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9E-22 3.1E-26 128.4 10.6 77 61-137 16-98 (99)
2 1sjq_A Polypyrimidine tract-bi 99.9 2.3E-21 8E-26 127.4 10.6 81 61-141 13-95 (105)
3 2cq1_A PTB-like protein L; RRM 99.9 1.8E-20 6E-25 122.7 14.3 83 59-141 10-94 (101)
4 2cq3_A RNA-binding protein 9; 99.9 3E-20 1E-24 121.6 14.7 85 57-141 8-96 (103)
5 1x4d_A Matrin 3; structural ge 99.9 6.4E-21 2.2E-25 124.9 11.2 78 61-138 12-92 (102)
6 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.7E-20 9.3E-25 121.8 14.2 83 59-141 10-96 (103)
7 2cpj_A Non-POU domain-containi 99.9 1.2E-20 4.1E-25 122.7 12.2 83 58-140 9-91 (99)
8 1x4c_A Splicing factor, argini 99.9 3.4E-20 1.2E-24 122.6 14.5 80 61-141 12-96 (108)
9 1why_A Hypothetical protein ri 99.8 1.6E-20 5.6E-25 121.6 12.1 81 60-140 13-95 (97)
10 2d9p_A Polyadenylate-binding p 99.8 2.2E-20 7.4E-25 122.3 12.2 86 57-142 8-97 (103)
11 1wex_A Hypothetical protein (r 99.8 2.1E-20 7.1E-25 123.0 11.9 81 61-141 12-94 (104)
12 2dnh_A Bruno-like 5, RNA bindi 99.8 2.8E-20 9.5E-25 122.1 12.5 83 60-142 11-101 (105)
13 2cph_A RNA binding motif prote 99.8 3.1E-20 1E-24 122.2 12.6 85 57-141 8-100 (107)
14 1x4a_A Splicing factor, argini 99.8 9E-20 3.1E-24 120.6 14.7 84 58-141 16-102 (109)
15 2cq0_A Eukaryotic translation 99.8 4E-20 1.4E-24 121.0 12.9 84 59-142 10-99 (103)
16 3r27_A HnRNP L, heterogeneous 99.8 1.9E-20 6.6E-25 121.9 11.0 78 61-138 18-97 (100)
17 2dgx_A KIAA0430 protein; RRM d 99.8 3.2E-20 1.1E-24 120.2 11.8 80 61-140 6-92 (96)
18 2dgo_A Cytotoxic granule-assoc 99.8 8E-20 2.7E-24 121.8 14.1 85 57-141 8-98 (115)
19 1x4g_A Nucleolysin TIAR; struc 99.8 3.4E-20 1.2E-24 122.6 12.2 81 61-141 22-102 (109)
20 2ad9_A Polypyrimidine tract-bi 99.8 1.7E-20 5.7E-25 126.1 10.5 84 59-142 26-111 (119)
21 2dgt_A RNA-binding protein 30; 99.8 6.3E-20 2.2E-24 117.8 12.9 81 59-141 5-85 (92)
22 2ytc_A PRE-mRNA-splicing facto 99.8 2.1E-20 7.1E-25 118.1 10.4 76 61-136 9-85 (85)
23 4f25_A Polyadenylate-binding p 99.8 1.8E-20 6E-25 125.3 10.5 78 64-141 5-86 (115)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.5E-20 1.2E-24 121.0 11.4 82 61-142 9-96 (102)
25 2do4_A Squamous cell carcinoma 99.8 7.1E-20 2.4E-24 119.2 12.8 84 57-140 10-98 (100)
26 1whw_A Hypothetical protein ri 99.8 7.4E-20 2.5E-24 118.8 12.8 83 61-143 5-93 (99)
27 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-19 4.4E-24 117.8 13.9 83 56-140 7-91 (99)
28 1x5u_A Splicing factor 3B subu 99.8 5.9E-20 2E-24 120.5 12.2 83 59-141 10-98 (105)
29 2cpz_A CUG triplet repeat RNA- 99.8 8.8E-20 3E-24 121.7 12.9 84 58-141 19-108 (115)
30 2e5h_A Zinc finger CCHC-type a 99.8 9.3E-20 3.2E-24 117.2 12.4 79 58-136 10-94 (94)
31 2dgs_A DAZ-associated protein 99.8 1E-19 3.5E-24 118.2 12.7 81 60-141 6-92 (99)
32 2dnq_A RNA-binding protein 4B; 99.8 8.8E-20 3E-24 116.6 11.9 79 61-141 5-83 (90)
33 2xnq_A Nuclear polyadenylated 99.8 7.5E-20 2.6E-24 118.8 11.7 81 56-138 14-95 (97)
34 2wbr_A GW182, gawky, LD47780P; 99.8 3.6E-20 1.2E-24 117.3 9.6 73 64-136 7-79 (89)
35 3md1_A Nuclear and cytoplasmic 99.8 7.4E-20 2.5E-24 115.0 11.0 75 65-139 2-82 (83)
36 1x5p_A Negative elongation fac 99.8 3.1E-19 1.1E-23 115.6 14.2 82 58-141 9-90 (97)
37 2cpe_A RNA-binding protein EWS 99.8 1.1E-19 3.9E-24 120.7 12.3 85 57-141 8-106 (113)
38 2jvo_A Nucleolar protein 3; nu 99.8 5.9E-20 2E-24 121.5 10.8 81 58-140 25-105 (108)
39 3s8s_A Histone-lysine N-methyl 99.8 7.2E-20 2.4E-24 121.6 11.2 77 62-138 4-86 (110)
40 2err_A Ataxin-2-binding protei 99.8 4.7E-20 1.6E-24 122.1 10.2 82 57-138 22-107 (109)
41 2dnp_A RNA-binding protein 14; 99.8 1.1E-19 3.8E-24 116.1 11.5 79 61-141 6-84 (90)
42 2dnm_A SRP46 splicing factor; 99.8 6.7E-20 2.3E-24 119.9 10.7 83 59-141 8-96 (103)
43 1x4f_A Matrin 3; structural ge 99.8 1.2E-19 4.2E-24 120.6 12.1 81 61-141 22-105 (112)
44 2la4_A Nuclear and cytoplasmic 99.8 3.9E-20 1.3E-24 120.7 9.4 77 62-138 25-101 (101)
45 1x5s_A Cold-inducible RNA-bind 99.8 8E-20 2.8E-24 119.3 11.0 82 60-141 8-95 (102)
46 2dnz_A Probable RNA-binding pr 99.8 1.6E-19 5.5E-24 116.3 12.2 80 62-141 3-88 (95)
47 1x5t_A Splicing factor 3B subu 99.8 7E-20 2.4E-24 118.2 10.5 80 62-141 3-89 (96)
48 1x4h_A RNA-binding protein 28; 99.8 1.8E-19 6.3E-24 119.2 12.8 82 60-141 11-104 (111)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.1E-20 2.4E-24 116.1 10.3 77 62-138 4-86 (87)
50 2cqc_A Arginine/serine-rich sp 99.8 1.3E-19 4.4E-24 116.7 11.4 79 59-137 10-94 (95)
51 2dgu_A Heterogeneous nuclear r 99.8 2.5E-19 8.5E-24 117.3 12.9 79 61-141 8-86 (103)
52 2do0_A HnRNP M, heterogeneous 99.8 4.3E-19 1.5E-23 118.0 14.2 80 61-140 12-96 (114)
53 1oo0_B CG8781-PA, drosophila Y 99.8 9.8E-20 3.4E-24 120.5 10.8 83 58-140 20-108 (110)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.9E-24 114.6 10.4 76 61-136 4-85 (85)
55 2cpf_A RNA binding motif prote 99.8 1.4E-19 4.7E-24 117.3 10.9 80 62-141 3-91 (98)
56 2jvr_A Nucleolar protein 3; RN 99.8 5.9E-20 2E-24 122.1 9.2 80 61-140 25-107 (111)
57 1wi8_A EIF-4B, eukaryotic tran 99.8 3E-19 1E-23 117.0 12.6 80 61-142 12-98 (104)
58 2cpi_A CCR4-NOT transcription 99.8 2E-19 6.8E-24 119.4 11.8 81 59-139 10-102 (111)
59 1whx_A Hypothetical protein ri 99.8 5.3E-20 1.8E-24 122.4 8.9 78 61-138 7-84 (111)
60 1p27_B RNA-binding protein 8A; 99.8 9.1E-20 3.1E-24 119.8 9.9 81 59-139 18-104 (106)
61 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.7E-24 114.5 10.6 77 63-139 3-86 (88)
62 2ywk_A Putative RNA-binding pr 99.8 1.1E-19 3.8E-24 117.1 10.0 79 59-137 11-94 (95)
63 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-19 7.1E-24 118.1 11.2 83 59-141 8-99 (106)
64 2kxn_B Transformer-2 protein h 99.8 1E-19 3.5E-24 124.1 10.0 82 58-139 40-127 (129)
65 2cqh_A IGF-II mRNA-binding pro 99.8 6E-20 2.1E-24 118.0 8.4 80 62-142 6-87 (93)
66 2dng_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 115.7 13.0 79 61-141 12-96 (103)
67 2khc_A Testis-specific RNP-typ 99.8 2.3E-19 7.9E-24 120.1 11.4 78 59-136 35-118 (118)
68 1u6f_A Tcubp1, RNA-binding pro 99.8 5E-19 1.7E-23 121.7 13.3 86 58-143 36-127 (139)
69 1wf1_A RNA-binding protein RAL 99.8 4.6E-19 1.6E-23 117.4 12.6 78 61-140 24-102 (110)
70 2lxi_A RNA-binding protein 10; 99.8 3.8E-20 1.3E-24 118.9 7.0 76 65-140 2-85 (91)
71 2e5j_A Methenyltetrahydrofolat 99.8 3.9E-19 1.3E-23 115.2 11.9 80 59-139 14-95 (97)
72 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-19 5.9E-24 115.5 10.0 80 61-140 5-88 (92)
73 2hvz_A Splicing factor, argini 99.8 1.2E-19 4.2E-24 118.3 9.3 77 65-141 1-78 (101)
74 2cqd_A RNA-binding region cont 99.8 7.6E-19 2.6E-23 117.3 13.4 82 57-139 10-97 (116)
75 2x1f_A MRNA 3'-END-processing 99.8 2.7E-19 9.4E-24 115.6 10.8 77 64-140 2-84 (96)
76 2la6_A RNA-binding protein FUS 99.8 2.5E-19 8.6E-24 116.4 10.5 80 57-136 6-99 (99)
77 2fy1_A RNA-binding motif prote 99.8 3.9E-19 1.3E-23 119.0 11.6 79 62-140 5-88 (116)
78 3ex7_B RNA-binding protein 8A; 99.8 1.6E-19 5.5E-24 122.2 9.7 84 58-141 16-105 (126)
79 2kvi_A Nuclear polyadenylated 99.8 1.3E-19 4.3E-24 117.3 8.7 79 61-141 7-86 (96)
80 2jrs_A RNA-binding protein 39; 99.8 3.7E-19 1.3E-23 117.7 10.5 82 58-139 20-107 (108)
81 2fc9_A NCL protein; structure 99.8 1.1E-18 3.7E-23 113.8 12.3 82 60-141 11-94 (101)
82 3ulh_A THO complex subunit 4; 99.8 6.7E-19 2.3E-23 115.8 11.0 77 60-136 25-106 (107)
83 2kt5_A RNA and export factor-b 99.8 2.8E-18 9.5E-23 115.9 14.3 83 59-141 30-117 (124)
84 2cq2_A Hypothetical protein LO 99.8 4.6E-19 1.6E-23 118.0 10.1 79 63-141 24-109 (114)
85 2div_A TRNA selenocysteine ass 99.8 4.6E-19 1.6E-23 115.1 9.9 79 61-139 6-95 (99)
86 2dh8_A DAZ-associated protein 99.8 4.7E-19 1.6E-23 116.3 9.9 83 58-141 10-98 (105)
87 2lkz_A RNA-binding protein 5; 99.8 2.5E-19 8.5E-24 116.0 8.4 76 62-137 7-94 (95)
88 2dhg_A TRNA selenocysteine ass 99.8 4.4E-19 1.5E-23 116.1 9.7 81 61-141 6-93 (104)
89 2cqp_A RNA-binding protein 12; 99.8 3.4E-19 1.2E-23 115.5 9.0 79 60-138 11-95 (98)
90 1nu4_A U1A RNA binding domain; 99.8 4.6E-19 1.6E-23 114.6 9.6 80 61-140 5-91 (97)
91 2i2y_A Fusion protein consists 99.8 5.3E-19 1.8E-23 123.2 10.6 82 58-139 67-149 (150)
92 2cq4_A RNA binding motif prote 99.8 1.2E-19 4.1E-24 120.9 7.0 78 62-140 23-106 (114)
93 2a3j_A U1 small nuclear ribonu 99.8 5.8E-19 2E-23 120.0 10.0 81 61-141 26-113 (127)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.1E-19 2.4E-23 124.5 10.7 83 59-141 67-155 (165)
95 3ucg_A Polyadenylate-binding p 99.8 1E-18 3.4E-23 111.2 10.1 75 63-138 5-85 (89)
96 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-18 7.1E-23 118.4 12.4 79 57-135 56-140 (140)
97 2lea_A Serine/arginine-rich sp 99.8 2.3E-19 7.7E-24 123.3 7.4 85 57-141 40-130 (135)
98 2fc8_A NCL protein; structure 99.8 2.4E-18 8.2E-23 112.2 12.0 83 59-141 10-95 (102)
99 2dgw_A Probable RNA-binding pr 99.8 1.9E-18 6.5E-23 110.5 11.2 77 61-139 7-88 (91)
100 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.7E-18 5.9E-23 121.3 12.0 81 60-140 35-121 (156)
101 3p5t_L Cleavage and polyadenyl 99.8 8.5E-20 2.9E-24 116.8 4.8 76 65-140 2-85 (90)
102 2kn4_A Immunoglobulin G-bindin 99.8 2E-18 6.7E-23 121.1 12.2 82 60-141 66-153 (158)
103 2cqg_A TDP-43, TAR DNA-binding 99.8 4.9E-18 1.7E-22 111.0 12.9 81 58-140 9-95 (103)
104 2m2b_A RNA-binding protein 10; 99.8 6.3E-19 2.1E-23 120.3 8.9 80 59-139 18-109 (131)
105 2dis_A Unnamed protein product 99.8 1.7E-18 5.9E-23 114.2 10.6 79 62-140 6-94 (109)
106 2rs2_A Musashi-1, RNA-binding 99.8 1.9E-18 6.5E-23 114.4 10.5 83 57-140 18-106 (109)
107 1x5o_A RNA binding motif, sing 99.8 4.2E-18 1.5E-22 113.2 12.2 81 58-138 19-112 (114)
108 2e44_A Insulin-like growth fac 99.8 2.8E-18 9.5E-23 110.7 10.8 78 61-138 12-92 (96)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.2E-19 1.4E-23 115.7 6.9 80 57-138 12-98 (100)
110 2cpx_A Hypothetical protein FL 99.8 3.6E-18 1.2E-22 113.7 11.5 81 61-141 22-108 (115)
111 1wg1_A KIAA1579 protein, homol 99.8 1.5E-18 5.2E-23 110.5 9.2 75 63-138 4-78 (88)
112 3lqv_A PRE-mRNA branch site pr 99.8 1.6E-18 5.6E-23 115.4 9.8 77 62-138 6-85 (115)
113 3beg_B Splicing factor, argini 99.8 8.7E-19 3E-23 117.1 8.4 78 62-140 14-96 (115)
114 3ns6_A Eukaryotic translation 99.8 2.8E-19 9.6E-24 116.6 5.8 77 62-138 4-93 (100)
115 1p1t_A Cleavage stimulation fa 99.8 2.8E-19 9.6E-24 117.0 5.8 79 62-140 6-90 (104)
116 1x4b_A Heterogeneous nuclear r 99.8 2.2E-18 7.6E-23 115.0 10.3 79 62-141 25-109 (116)
117 3n9u_C Cleavage and polyadenyl 99.8 1.2E-18 4E-23 122.5 9.3 76 63-138 54-137 (156)
118 1s79_A Lupus LA protein; RRM, 99.8 1.1E-18 3.8E-23 114.5 8.5 77 60-137 7-88 (103)
119 2jwn_A Embryonic polyadenylate 99.8 1.7E-18 5.7E-23 116.8 9.5 78 63-141 35-118 (124)
120 1x4e_A RNA binding motif, sing 99.8 4.4E-19 1.5E-23 112.0 6.1 76 62-137 3-84 (85)
121 2nlw_A Eukaryotic translation 99.8 1.8E-18 6.3E-23 113.6 9.3 79 60-138 11-100 (105)
122 1fjc_A Nucleolin RBD2, protein 99.8 2.9E-18 9.9E-23 110.6 9.9 81 59-140 11-93 (96)
123 2e5i_A Heterogeneous nuclear r 99.8 1.1E-17 3.8E-22 113.1 13.0 78 63-140 24-104 (124)
124 1wg5_A Heterogeneous nuclear r 99.8 5.5E-18 1.9E-22 111.2 11.2 80 59-139 10-95 (104)
125 3s7r_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 108.0 10.0 75 60-135 7-87 (87)
126 2bz2_A Negative elongation fac 99.8 2.8E-18 9.7E-23 115.7 9.8 80 60-141 35-114 (121)
127 2ek1_A RNA-binding protein 12; 99.8 7.5E-19 2.6E-23 113.2 6.5 76 62-137 13-94 (95)
128 1sjr_A Polypyrimidine tract-bi 99.8 5E-18 1.7E-22 119.6 10.7 79 61-139 43-125 (164)
129 3zzy_A Polypyrimidine tract-bi 99.8 1.2E-17 4E-22 113.6 11.5 80 61-140 25-108 (130)
130 2e5g_A U6 snRNA-specific termi 99.8 1.1E-17 3.8E-22 107.6 10.8 78 62-140 6-84 (94)
131 2cpy_A RNA-binding protein 12; 99.8 5.9E-18 2E-22 112.8 9.7 78 60-138 11-94 (114)
132 2hzc_A Splicing factor U2AF 65 99.7 8E-18 2.7E-22 106.5 9.2 72 62-134 4-86 (87)
133 1wez_A HnRNP H', FTP-3, hetero 99.7 1.1E-17 3.8E-22 109.5 9.8 79 60-140 11-94 (102)
134 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-17 5.1E-22 108.3 10.2 80 60-140 13-97 (101)
135 2db1_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 112.8 9.2 76 61-137 14-97 (118)
136 3d2w_A TAR DNA-binding protein 99.7 1.6E-17 5.3E-22 106.2 9.9 76 61-140 8-86 (89)
137 2mss_A Protein (musashi1); RNA 99.7 2.7E-18 9.2E-23 105.9 5.8 69 66-135 1-75 (75)
138 3tyt_A Heterogeneous nuclear r 99.7 2.2E-17 7.4E-22 120.8 11.4 77 62-138 2-80 (205)
139 2ki2_A SS-DNA binding protein 99.7 1.1E-18 3.9E-23 111.3 3.9 75 65-140 2-82 (90)
140 2krb_A Eukaryotic translation 99.7 3.9E-18 1.3E-22 106.9 5.5 69 64-132 1-80 (81)
141 2hgl_A HNRPF protein, heteroge 99.7 9.5E-18 3.2E-22 115.3 7.9 78 59-137 39-124 (136)
142 2dnn_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 108.5 10.2 75 61-137 13-92 (109)
143 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.6E-18 1.6E-22 105.3 5.5 70 65-135 1-76 (77)
144 3egn_A RNA-binding protein 40; 99.7 1.3E-17 4.5E-22 115.2 8.3 81 61-141 42-133 (143)
145 1wel_A RNA-binding protein 12; 99.7 6.5E-18 2.2E-22 114.1 6.5 78 60-138 21-104 (124)
146 4f02_A Polyadenylate-binding p 99.7 4.1E-17 1.4E-21 119.6 10.9 78 62-139 13-96 (213)
147 2diu_A KIAA0430 protein; struc 99.7 4E-17 1.4E-21 104.3 9.1 74 63-140 8-86 (96)
148 1wf0_A TDP-43, TAR DNA-binding 99.7 2E-17 6.8E-22 105.1 7.7 78 62-141 3-81 (88)
149 2lcw_A RNA-binding protein FUS 99.6 5.4E-19 1.9E-23 118.1 0.0 81 61-141 4-98 (116)
150 3u1l_A PRE-mRNA-splicing facto 99.7 1.8E-17 6.1E-22 123.6 7.9 79 61-139 131-230 (240)
151 3sde_A Paraspeckle component 1 99.7 1.1E-16 3.7E-21 120.8 12.2 82 57-138 15-96 (261)
152 3md3_A Nuclear and cytoplasmic 99.7 1.5E-16 5.3E-21 111.1 12.1 79 59-137 82-166 (166)
153 2f3j_A RNA and export factor b 99.7 5.7E-17 2E-21 116.1 9.6 79 60-138 84-167 (177)
154 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-17 5.3E-22 109.5 6.1 78 60-138 7-92 (107)
155 1fxl_A Paraneoplastic encephal 99.7 1.6E-16 5.4E-21 111.2 11.6 77 64-140 2-84 (167)
156 3q2s_C Cleavage and polyadenyl 99.7 2.3E-17 7.8E-22 122.6 7.3 75 63-137 67-149 (229)
157 4f02_A Polyadenylate-binding p 99.7 8.9E-17 3E-21 117.8 10.2 76 63-138 102-181 (213)
158 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.7E-21 116.2 11.0 80 62-141 123-208 (216)
159 3pgw_S U1-70K; protein-RNA com 99.7 1.9E-16 6.6E-21 127.6 12.6 78 62-139 100-183 (437)
160 2yh0_A Splicing factor U2AF 65 99.7 2.9E-16 1E-20 113.0 11.9 78 62-139 112-195 (198)
161 1b7f_A Protein (SXL-lethal pro 99.7 2.2E-16 7.6E-21 110.7 10.7 78 63-140 2-85 (168)
162 1iqt_A AUF1, heterogeneous nuc 99.7 1.7E-17 5.9E-22 102.2 4.2 69 66-135 1-75 (75)
163 3pgw_A U1-A; protein-RNA compl 99.7 4.6E-16 1.6E-20 118.1 12.2 76 61-136 204-281 (282)
164 2hgn_A Heterogeneous nuclear r 99.7 2.2E-17 7.6E-22 113.8 4.4 79 60-140 42-125 (139)
165 2xs2_A Deleted in azoospermia- 99.7 4.6E-17 1.6E-21 106.1 5.7 76 61-138 6-86 (102)
166 3md3_A Nuclear and cytoplasmic 99.7 3.9E-16 1.3E-20 109.0 10.6 75 65-139 1-80 (166)
167 2adc_A Polypyrimidine tract-bi 99.7 3.4E-16 1.2E-20 115.9 10.5 79 60-138 30-110 (229)
168 2hgm_A HNRPF protein, heteroge 99.7 1.3E-16 4.5E-21 108.1 7.5 76 60-137 38-120 (126)
169 2g4b_A Splicing factor U2AF 65 99.7 3.5E-16 1.2E-20 110.2 9.9 75 61-135 91-171 (172)
170 1l3k_A Heterogeneous nuclear r 99.7 6.2E-16 2.1E-20 111.1 10.3 79 60-139 9-93 (196)
171 1qm9_A Polypyrimidine tract-bi 99.7 7.6E-16 2.6E-20 111.2 10.1 77 62-138 118-197 (198)
172 2adc_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 112.6 11.4 77 62-138 149-228 (229)
173 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-15 4.9E-20 115.4 11.6 79 61-139 6-91 (282)
174 2dnl_A Cytoplasmic polyadenyla 99.6 3.9E-16 1.3E-20 103.9 7.4 74 62-138 6-88 (114)
175 1fje_B Nucleolin RBD12, protei 99.6 1.3E-15 4.6E-20 107.7 10.7 79 59-138 94-174 (175)
176 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 109.6 10.4 79 62-141 102-186 (196)
177 2dit_A HIV TAT specific factor 99.6 6.5E-15 2.2E-19 97.7 12.9 80 61-140 12-104 (112)
178 1qm9_A Polypyrimidine tract-bi 99.6 6E-16 2E-20 111.7 8.4 76 63-138 2-79 (198)
179 1b7f_A Protein (SXL-lethal pro 99.6 2E-15 6.9E-20 105.8 10.8 75 61-135 86-168 (168)
180 2g4b_A Splicing factor U2AF 65 99.6 1.6E-15 5.6E-20 106.8 10.3 75 63-138 3-88 (172)
181 2dha_A FLJ20171 protein; RRM d 99.6 2.9E-16 9.9E-21 106.1 5.9 75 62-137 21-104 (123)
182 2cjk_A Nuclear polyadenylated 99.6 4.6E-16 1.6E-20 109.1 7.2 75 63-138 86-166 (167)
183 3nmr_A Cugbp ELAV-like family 99.6 1.5E-15 5.2E-20 107.0 9.4 76 61-136 92-175 (175)
184 2qfj_A FBP-interacting repress 99.6 2.4E-15 8.2E-20 109.6 10.0 77 63-139 27-109 (216)
185 2yh0_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 107.3 10.2 75 63-138 3-88 (198)
186 1fxl_A Paraneoplastic encephal 99.6 3.4E-15 1.2E-19 104.3 9.5 75 61-135 85-167 (167)
187 2voo_A Lupus LA protein; RNA-b 99.6 4.1E-15 1.4E-19 107.7 9.9 74 64-138 109-187 (193)
188 3nmr_A Cugbp ELAV-like family 99.6 2.7E-15 9.2E-20 105.7 8.6 76 63-138 2-88 (175)
189 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.9E-19 95.6 10.6 75 63-137 7-93 (105)
190 3smz_A Protein raver-1, ribonu 99.6 4.9E-15 1.7E-19 112.5 10.2 81 61-141 181-267 (284)
191 2j8a_A Histone-lysine N-methyl 99.6 2.4E-15 8.4E-20 101.3 7.1 73 65-137 3-95 (136)
192 3smz_A Protein raver-1, ribonu 99.6 1.2E-14 4.3E-19 110.3 11.7 75 63-138 21-95 (284)
193 2ghp_A U4/U6 snRNA-associated 99.6 7.6E-15 2.6E-19 111.9 10.0 78 60-138 206-291 (292)
194 1fje_B Nucleolin RBD12, protei 99.6 2.4E-14 8.2E-19 101.2 10.6 79 60-139 9-92 (175)
195 2cjk_A Nuclear polyadenylated 99.6 1.1E-14 3.9E-19 101.9 8.6 74 63-138 2-81 (167)
196 2ghp_A U4/U6 snRNA-associated 99.5 9.4E-15 3.2E-19 111.4 7.7 79 59-138 36-118 (292)
197 3tht_A Alkylated DNA repair pr 99.5 2.3E-14 7.9E-19 111.9 9.6 76 61-136 15-97 (345)
198 3tyt_A Heterogeneous nuclear r 99.5 2E-14 6.7E-19 105.0 7.6 74 62-135 121-204 (205)
199 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.4E-13 8.1E-18 88.5 11.8 66 74-141 27-93 (100)
200 3v4m_A Splicing factor U2AF 65 99.5 2.3E-13 7.9E-18 89.3 9.2 75 63-137 4-96 (105)
201 3sde_A Paraspeckle component 1 99.5 1.6E-13 5.6E-18 103.3 8.9 76 63-138 95-179 (261)
202 1jmt_A Splicing factor U2AF 35 99.5 2.5E-14 8.4E-19 93.8 3.7 67 69-135 20-103 (104)
203 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4E-17 87.7 9.2 75 63-137 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.4 3.1E-12 1.1E-16 85.1 10.4 75 63-137 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.6E-16 83.0 9.7 78 59-136 13-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.7E-11 5.9E-16 77.5 8.9 75 61-138 4-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.8E-10 9.7E-15 72.3 6.7 73 61-136 12-93 (95)
208 2l9w_A U4/U6 snRNA-associated- 98.9 1.2E-08 4.2E-13 66.2 9.8 73 62-134 19-96 (117)
209 3dxb_A Thioredoxin N-terminall 98.9 4.5E-09 1.5E-13 77.0 7.3 60 77-136 142-211 (222)
210 1wey_A Calcipressin 1; structu 98.5 1.7E-06 6E-11 55.7 9.2 77 64-140 5-86 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.0 0.00015 5E-09 46.6 10.8 74 62-138 6-84 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00013 4.3E-09 46.0 8.2 72 65-136 2-86 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.7 0.00018 6.2E-09 47.5 7.8 74 60-135 20-94 (119)
214 1whv_A Poly(A)-specific ribonu 97.7 0.00052 1.8E-08 43.5 9.2 57 61-120 13-69 (100)
215 2l08_A Regulator of nonsense t 97.3 0.00063 2.2E-08 43.2 6.1 73 64-136 9-94 (97)
216 3ctr_A Poly(A)-specific ribonu 97.2 0.00062 2.1E-08 43.3 4.8 55 64-121 6-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 96.9 0.00053 1.8E-08 55.4 3.3 53 64-117 53-106 (464)
218 3p3d_A Nucleoporin 53; structu 96.9 0.0014 4.8E-08 43.9 4.5 71 64-136 7-97 (132)
219 2i2y_A Fusion protein consists 95.5 0.0047 1.6E-07 41.9 1.6 37 100-137 13-50 (150)
220 2kn4_A Immunoglobulin G-bindin 93.5 0.045 1.5E-06 37.1 2.8 24 100-123 13-36 (158)
221 3d45_A Poly(A)-specific ribonu 92.9 0.49 1.7E-05 38.6 8.4 55 64-121 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 85.2 2.9 9.9E-05 24.4 5.6 68 66-136 2-75 (76)
223 4e8u_A Putative uncharacterize 52.5 40 0.0014 23.3 5.7 46 65-110 13-72 (172)
224 3fry_A Probable copper-exporti 41.0 45 0.0016 18.4 5.4 54 65-119 7-60 (73)
225 4a4j_A Pacszia, cation-transpo 35.6 53 0.0018 17.6 4.5 53 66-118 5-60 (69)
226 3ts2_A Protein LIN-28 homolog 34.1 9.4 0.00032 25.7 0.2 28 79-108 2-29 (148)
227 3fut_A Dimethyladenosine trans 24.5 63 0.0021 23.7 3.3 30 65-95 111-140 (271)
228 3h7h_B Transcription elongatio 22.7 1E+02 0.0035 19.2 3.6 34 90-123 40-74 (106)
229 3lpe_A Putative transcription 22.5 1.3E+02 0.0046 18.0 5.7 34 90-123 39-73 (92)
230 3uzu_A Ribosomal RNA small sub 21.1 32 0.0011 25.4 1.1 32 65-96 115-146 (279)
231 3dxs_X Copper-transporting ATP 20.2 1.2E+02 0.004 16.4 5.8 54 66-119 5-62 (74)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=9e-22 Score=128.44 Aligned_cols=77 Identities=32% Similarity=0.557 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
...+++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 455789999999999999999999999999999998764 58999999999999999999999999999999999
Q ss_pred ccC
Q 031309 135 GRN 137 (161)
Q Consensus 135 a~~ 137 (161)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 985
No 2
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=127.41 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--ceeCCeEeEEEeccCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNP 138 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g--~~~~g~~i~v~~a~~~ 138 (161)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++|||||+|.+.++|..|+..|++ ..+.|++|+|.|++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 44568999999999999999999999999999999999999999999999999999998864 7899999999999876
Q ss_pred CCc
Q 031309 139 ANK 141 (161)
Q Consensus 139 ~~~ 141 (161)
..+
T Consensus 93 ~~~ 95 (105)
T 1sjq_A 93 ELK 95 (105)
T ss_dssp SCC
T ss_pred CCC
Confidence 444
No 3
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-20 Score=122.72 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHh--CCceeCCeEeEEEecc
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL--NGTVIGKQSVRLSWGR 136 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l--~g~~~~g~~i~v~~a~ 136 (161)
....+.++|||+|||+.+++++|+++|++||.|..+.++.++|||||+|.+.++|..|+..| ++..+.|+.|.|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 33456789999999999999999999999999999999999999999999999999999977 5678999999999999
Q ss_pred CCCCc
Q 031309 137 NPANK 141 (161)
Q Consensus 137 ~~~~~ 141 (161)
++..+
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76544
No 4
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-20 Score=121.64 Aligned_cols=85 Identities=34% Similarity=0.528 Sum_probs=77.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
......+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..++|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3344566789999999999999999999999999999999876 789999999999999999999999999999999
Q ss_pred EeccCCCCc
Q 031309 133 SWGRNPANK 141 (161)
Q Consensus 133 ~~a~~~~~~ 141 (161)
++++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999976543
No 5
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.4e-21 Score=124.95 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--ceeCCeEeEEEeccC
Q 031309 61 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRN 137 (161)
Q Consensus 61 ~~~~~~l~V~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g--~~~~g~~i~v~~a~~ 137 (161)
..+.++|||+|||+ .+++++|+++|++||.|..+.++.+++||||+|.+.++|..|+..|++ ..+.|++|+|.|++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34678999999999 999999999999999999999999999999999999999999999886 459999999999986
Q ss_pred C
Q 031309 138 P 138 (161)
Q Consensus 138 ~ 138 (161)
.
T Consensus 92 ~ 92 (102)
T 1x4d_A 92 Y 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-20 Score=121.81 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
......++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|..|+..||+..+.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34556789999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 031309 135 GRNPANK 141 (161)
Q Consensus 135 a~~~~~~ 141 (161)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9976544
No 7
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=122.73 Aligned_cols=83 Identities=29% Similarity=0.542 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.....+.++|||+|||..+++++|+++|++||.|..+.+..++|||||+|.+.++|.+|+..|||..+.|+.|+|+|+++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 8
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-20 Score=122.57 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCC-----eEeEEEec
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-----QSVRLSWG 135 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g-----~~i~v~~a 135 (161)
....++|||+|||.++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.||+.||+..+.| +.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456789999999999999999999999999999999987 999999999999999999999999999 99999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
+++...
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 976544
No 9
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=121.64 Aligned_cols=81 Identities=23% Similarity=0.541 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeC--CeEeEEEeccC
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG--KQSVRLSWGRN 137 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~--g~~i~v~~a~~ 137 (161)
...+.++|||+|||.++++++|+++|++||.|..+.+..+++||||+|.+.++|+.|+..||+..+. |+.|+|+|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3455689999999999999999999999999999999988999999999999999999999999999 99999999997
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
++.
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 10
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=122.30 Aligned_cols=86 Identities=29% Similarity=0.554 Sum_probs=77.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
......+.++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|..|+..||+..+.|+.|.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3344557789999999999999999999999999999999854 799999999999999999999999999999999
Q ss_pred EeccCCCCcc
Q 031309 133 SWGRNPANKQ 142 (161)
Q Consensus 133 ~~a~~~~~~~ 142 (161)
+|++++..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9999765543
No 11
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=123.02 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCc--eeCCeEeEEEeccCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGT--VIGKQSVRLSWGRNP 138 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~--~~~g~~i~v~~a~~~ 138 (161)
..+..+|||+|||..+++++|+++|++||.|..+.++.++|||||+|.+.++|..|+..|++. .+.|+.|+|.|++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 455689999999999999999999999999999999999999999999999999999988654 589999999999876
Q ss_pred CCc
Q 031309 139 ANK 141 (161)
Q Consensus 139 ~~~ 141 (161)
..+
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 544
No 12
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=2.8e-20 Score=122.12 Aligned_cols=83 Identities=27% Similarity=0.536 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCC---eEeE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGK---QSVR 131 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g---~~i~ 131 (161)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|||..+.| +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456789999999999999999999999999999999876 6999999999999999999999999988 9999
Q ss_pred EEeccCCCCcc
Q 031309 132 LSWGRNPANKQ 142 (161)
Q Consensus 132 v~~a~~~~~~~ 142 (161)
|.|+++...+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999876554
No 13
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=122.24 Aligned_cols=85 Identities=25% Similarity=0.543 Sum_probs=77.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHHh-CCceeCCe
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKL-NGTVIGKQ 128 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-------~g~afv~f~~~~~a~~ai~~l-~g~~~~g~ 128 (161)
........++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..| |+..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3344567789999999999999999999999999999999776 699999999999999999999 99999999
Q ss_pred EeEEEeccCCCCc
Q 031309 129 SVRLSWGRNPANK 141 (161)
Q Consensus 129 ~i~v~~a~~~~~~ 141 (161)
.|+|+|+++....
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999976544
No 14
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9e-20 Score=120.55 Aligned_cols=84 Identities=23% Similarity=0.468 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....+.++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|+.|++.||+..++|+.|+|+|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344556789999999999999999999999999999999765 68999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 031309 135 GRNPANK 141 (161)
Q Consensus 135 a~~~~~~ 141 (161)
+++....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9976443
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4e-20 Score=121.01 Aligned_cols=84 Identities=25% Similarity=0.487 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
....+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34566789999999999999999999999999999998765 589999999999999999999999999999999
Q ss_pred EeccCCCCcc
Q 031309 133 SWGRNPANKQ 142 (161)
Q Consensus 133 ~~a~~~~~~~ 142 (161)
.|++++..+.
T Consensus 90 ~~a~~~~~~~ 99 (103)
T 2cq0_A 90 EWAKPSTNSG 99 (103)
T ss_dssp EESSCCCCSC
T ss_pred EECCCCCCCC
Confidence 9999765443
No 16
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=121.94 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCce--eCCeEeEEEeccCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWGRNP 138 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~--~~g~~i~v~~a~~~ 138 (161)
..+..+|||+|||..+++++|+++|++||.|..+.+++++|+|||+|.+.++|..|+..|++.. +.|++|.|.+++++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4456799999999999999999999999999999999999999999999999999999999875 78999999999864
No 17
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=120.22 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
..+.++|||+|||..+++++|+ ++|++||.|..+.++.+ ++||||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4566899999999999999999 99999999999999876 7999999999999999999999999999999999
Q ss_pred eccCCCC
Q 031309 134 WGRNPAN 140 (161)
Q Consensus 134 ~a~~~~~ 140 (161)
++++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987643
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=8e-20 Score=121.84 Aligned_cols=85 Identities=32% Similarity=0.686 Sum_probs=76.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
......+.++|||+|||..+++++|+++|+.||.|..|.+..+ +|||||+|.+.++|+.|+..|+|..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3344567789999999999999999999999999999999865 5899999999999999999999999999999
Q ss_pred EEEeccCCCCc
Q 031309 131 RLSWGRNPANK 141 (161)
Q Consensus 131 ~v~~a~~~~~~ 141 (161)
+|.|+++....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 19
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=122.62 Aligned_cols=81 Identities=33% Similarity=0.675 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
....++|||+|||..+++++|+++|++||.|..+.+..++|||||+|.+.++|..|+..|+|..+.|+.|+|.|+++...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred c
Q 031309 141 K 141 (161)
Q Consensus 141 ~ 141 (161)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 20
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=126.07 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC--ceeCCeEeEEEecc
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGR 136 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g--~~~~g~~i~v~~a~ 136 (161)
....+..+|||+|||+.+++++|+++|++||.|..+.++.++|||||+|.+.++|.+|+..|++ ..+.|+.|+|.|++
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 3345678999999999999999999999999999999999999999999999999999998874 68999999999998
Q ss_pred CCCCcc
Q 031309 137 NPANKQ 142 (161)
Q Consensus 137 ~~~~~~ 142 (161)
++..+.
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 765443
No 21
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.3e-20 Score=117.75 Aligned_cols=81 Identities=25% Similarity=0.478 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
......++|||+|||..+++++|+++|++||.|..+.+. ++||||+|.+.++|..|+..||+..+.|+.|+|++++++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 345567899999999999999999999999999999998 569999999999999999999999999999999999976
Q ss_pred CCc
Q 031309 139 ANK 141 (161)
Q Consensus 139 ~~~ 141 (161)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 22
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=118.15 Aligned_cols=76 Identities=39% Similarity=0.763 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHh-CCceeCCeEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~i~v~~a~ 136 (161)
..+.++|||+|||..+++++|+++|++||.|..+.+..++|||||+|.+.++|..|+..| ++..++|+.|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456689999999999999999999999999999999999999999999999999999989 9999999999999985
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.8e-20 Score=125.35 Aligned_cols=78 Identities=32% Similarity=0.597 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
.++|||+|||..+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|+.|+..|+|..++|+.|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 458999999999999999999999999999998765 6899999999999999999999999999999999998754
Q ss_pred Cc
Q 031309 140 NK 141 (161)
Q Consensus 140 ~~ 141 (161)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=121.04 Aligned_cols=82 Identities=27% Similarity=0.573 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|+..||+..+.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999998764 68999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 031309 135 GRNPANKQ 142 (161)
Q Consensus 135 a~~~~~~~ 142 (161)
++++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99865544
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-20 Score=119.19 Aligned_cols=84 Identities=19% Similarity=0.419 Sum_probs=75.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
......+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..+.|+.|+
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3344566789999999999999999999999999999998765 49999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 031309 132 LSWGRNPAN 140 (161)
Q Consensus 132 v~~a~~~~~ 140 (161)
|+|++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999997643
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-20 Score=118.83 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346689999999999999999999999999999999775 49999999999999999999999999999999999
Q ss_pred ccCCCCccC
Q 031309 135 GRNPANKQA 143 (161)
Q Consensus 135 a~~~~~~~~ 143 (161)
++++.....
T Consensus 85 a~~~~~~~~ 93 (99)
T 1whw_A 85 STIKKEASQ 93 (99)
T ss_dssp CCCCSTTCC
T ss_pred cCCCccccc
Confidence 998765443
No 27
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-19 Score=117.82 Aligned_cols=83 Identities=27% Similarity=0.451 Sum_probs=75.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccc--CCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 56 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 56 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~--g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
.......+.++|||+|||..+++++|+++|++| |.|..+.+. +|||||+|.+.++|..|+..|||..+.|+.|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 344445677899999999999999999999999 899999876 7899999999999999999999999999999999
Q ss_pred eccCCCC
Q 031309 134 WGRNPAN 140 (161)
Q Consensus 134 ~a~~~~~ 140 (161)
|+++...
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9997654
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.9e-20 Score=120.54 Aligned_cols=83 Identities=25% Similarity=0.484 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44556789999999999999999999999999999998764 589999999999999999999999999999999
Q ss_pred EeccCCCCc
Q 031309 133 SWGRNPANK 141 (161)
Q Consensus 133 ~~a~~~~~~ 141 (161)
.++++....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999976543
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=8.8e-20 Score=121.68 Aligned_cols=84 Identities=26% Similarity=0.486 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|+.|+..||+..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344456689999999999999999999999999999998765 48999999999999999999999999999999
Q ss_pred EEeccCCCCc
Q 031309 132 LSWGRNPANK 141 (161)
Q Consensus 132 v~~a~~~~~~ 141 (161)
|+|++++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999976543
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.3e-20 Score=117.23 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=72.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
....++.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..+.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344556789999999999999999999999999999999764 58999999999999999999999999999999
Q ss_pred EEecc
Q 031309 132 LSWGR 136 (161)
Q Consensus 132 v~~a~ 136 (161)
|+|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=118.21 Aligned_cols=81 Identities=25% Similarity=0.503 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+. |++..++|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456689999999999999999999999999999999764 6899999999999999998 99999999999999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
+++++..+
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99976544
No 32
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.8e-20 Score=116.62 Aligned_cols=79 Identities=25% Similarity=0.509 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
..+.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|+.|+..||+..++|+.|+|+|++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4567899999999999999999999999999999998 89999999999999999999999999999999999997654
Q ss_pred c
Q 031309 141 K 141 (161)
Q Consensus 141 ~ 141 (161)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=7.5e-20 Score=118.76 Aligned_cols=81 Identities=27% Similarity=0.453 Sum_probs=72.2
Q ss_pred CCCCCCCCCcEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 56 PQSEGDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 56 ~~~~~~~~~~~l~V~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
......++.++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|||..++|+.|+|++
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3444556788999999998 99999999999999999999986 89999999999999999999999999999999999
Q ss_pred ccCC
Q 031309 135 GRNP 138 (161)
Q Consensus 135 a~~~ 138 (161)
++++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 34
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.6e-20 Score=117.26 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
...|||+||++.+++++|+++|.+||+|..+.+..++|||||+|.+.++|+.|+..||+..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999983
No 35
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=7.4e-20 Score=115.02 Aligned_cols=75 Identities=29% Similarity=0.627 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|+..|||..++|+.|+|+|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999998765 689999999999999999999999999999999999875
Q ss_pred C
Q 031309 139 A 139 (161)
Q Consensus 139 ~ 139 (161)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 36
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-19 Score=115.62 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.......++|||+|| .+++++|+++|++||.|..+.+...+|||||+|.+.++|.+|+..|++..+.|+.|+|.|+++
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 334456789999996 899999999999999999999998899999999999999999999999999999999999987
Q ss_pred CCCc
Q 031309 138 PANK 141 (161)
Q Consensus 138 ~~~~ 141 (161)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 37
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=120.75 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=76.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeE--------EEEEeCC------CcEEEEEecCHHHHHHHHHHhCC
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG------KGCGFVQFANRENAEEALHKLNG 122 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~--------~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g 122 (161)
......+.++|||+|||..+++++|+++|++||.|. .+.+..+ +|||||+|.+.++|..|+..|||
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 344566788999999999999999999999999998 5887765 68999999999999999999999
Q ss_pred ceeCCeEeEEEeccCCCCc
Q 031309 123 TVIGKQSVRLSWGRNPANK 141 (161)
Q Consensus 123 ~~~~g~~i~v~~a~~~~~~ 141 (161)
..+.|+.|+|++++++...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999976544
No 38
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=5.9e-20 Score=121.55 Aligned_cols=81 Identities=31% Similarity=0.601 Sum_probs=73.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.......++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|||..++|+.|.|+|+++
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3445667899999999999999999999999999999998 89999999999999999999999999999999999997
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=7.2e-20 Score=121.58 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
++..+|||+|||..+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999998764 589999999999999999999999999999999999
Q ss_pred cCC
Q 031309 136 RNP 138 (161)
Q Consensus 136 ~~~ 138 (161)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 40
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=122.13 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=75.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
........++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|+|..++|+.|+|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3444567789999999999999999999999999999999875 799999999999999999999999999999999
Q ss_pred EeccCC
Q 031309 133 SWGRNP 138 (161)
Q Consensus 133 ~~a~~~ 138 (161)
++++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999865
No 41
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=116.13 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
..+.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|+.|+..|||..++|+.|+|+++++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 4566899999999999999999999999999999998 56999999999999999999999999999999999997644
Q ss_pred c
Q 031309 141 K 141 (161)
Q Consensus 141 ~ 141 (161)
+
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-20 Score=119.94 Aligned_cols=83 Identities=25% Similarity=0.466 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
+...+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|||..++|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999998764 689999999999999999999999999999999
Q ss_pred EeccCCCCc
Q 031309 133 SWGRNPANK 141 (161)
Q Consensus 133 ~~a~~~~~~ 141 (161)
+++++....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999975443
No 43
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=120.60 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhC--CceeCCeEeEEEeccC
Q 031309 61 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVRLSWGRN 137 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~--g~~~~g~~i~v~~a~~ 137 (161)
..+.++|||+|||++ +++++|+++|++||.|..+.+.+++|||||+|.+.++|..|+..|+ +..+.|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456789999999998 9999999999999999999999999999999999999999999886 4569999999999986
Q ss_pred CCCc
Q 031309 138 PANK 141 (161)
Q Consensus 138 ~~~~ 141 (161)
....
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 5433
No 44
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.9e-20 Score=120.67 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...++|||+|||.++++++|+++|+.||.|..+.+..++|||||+|.+.++|..|+..|||..++|+.|+|.|++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999863
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8e-20 Score=119.29 Aligned_cols=82 Identities=30% Similarity=0.607 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..||+..++|+.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999874 5899999999999999999999999999999999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99976544
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=116.32 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..++|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 976544
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7e-20 Score=118.25 Aligned_cols=80 Identities=30% Similarity=0.584 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.+.++|||+|||..+++++|+++|++||.|..+ .++.+ +|||||+|.+.++|+.|+..||+..+.|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 88775 68999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 031309 135 GRNPANK 141 (161)
Q Consensus 135 a~~~~~~ 141 (161)
++++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9976544
No 48
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=119.22 Aligned_cols=82 Identities=22% Similarity=0.472 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhC------CceeCC
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLN------GTVIGK 127 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~------g~~~~g 127 (161)
.....++|||+|||..+++++|+++|..||.|..|.++.+ +|||||+|.+.++|..|+..|| +..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456789999999999999999999999999999999754 6899999999999999999999 999999
Q ss_pred eEeEEEeccCCCCc
Q 031309 128 QSVRLSWGRNPANK 141 (161)
Q Consensus 128 ~~i~v~~a~~~~~~ 141 (161)
+.|+|.|++++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999976443
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=116.09 Aligned_cols=77 Identities=31% Similarity=0.690 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|||..++|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999998765 589999999999999999999999999999999999
Q ss_pred cCC
Q 031309 136 RNP 138 (161)
Q Consensus 136 ~~~ 138 (161)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=116.69 Aligned_cols=79 Identities=35% Similarity=0.509 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999998754 589999999999999999999999999999999
Q ss_pred EeccC
Q 031309 133 SWGRN 137 (161)
Q Consensus 133 ~~a~~ 137 (161)
+|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99975
No 51
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=2.5e-19 Score=117.31 Aligned_cols=79 Identities=29% Similarity=0.553 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
..+.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|.+|+..||+..+.|+.|.|+|++++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3456899999999999999999999999999999988 67999999999999999999999999999999999987654
Q ss_pred c
Q 031309 141 K 141 (161)
Q Consensus 141 ~ 141 (161)
+
T Consensus 86 ~ 86 (103)
T 2dgu_A 86 K 86 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-19 Score=118.04 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
....++|||+|||..+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|+.|+..||+..++|+.|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 455789999999999999999999999999999998875 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 031309 136 RNPAN 140 (161)
Q Consensus 136 ~~~~~ 140 (161)
+....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 85433
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=9.8e-20 Score=120.49 Aligned_cols=83 Identities=22% Similarity=0.479 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 334566789999999999999999999999999999998765 59999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 031309 132 LSWGRNPAN 140 (161)
Q Consensus 132 v~~a~~~~~ 140 (161)
|.|++++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987543
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=1.1e-19 Score=114.64 Aligned_cols=76 Identities=28% Similarity=0.626 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|||..++|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999988653 78999999999999999999999999999999999
Q ss_pred cc
Q 031309 135 GR 136 (161)
Q Consensus 135 a~ 136 (161)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=117.33 Aligned_cols=80 Identities=28% Similarity=0.502 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|+..|||..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45678999999999999999999999999999988742 579999999999999999999999999999999
Q ss_pred EeccCCCCc
Q 031309 133 SWGRNPANK 141 (161)
Q Consensus 133 ~~a~~~~~~ 141 (161)
+++++....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876443
No 56
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=5.9e-20 Score=122.13 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~--~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
....++|||+|||+++++++|+++|++|| .|..+.+.. .+|||||+|.+.++|+.|+..|||..++|+.|+|++++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 899998863 489999999999999999999999999999999999986
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
++.
T Consensus 105 ~p~ 107 (111)
T 2jvr_A 105 PPP 107 (111)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-19 Score=117.03 Aligned_cols=80 Identities=29% Similarity=0.544 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
....++|||+|||..+++++|+++|+.|| |..|.++.+ +|||||+|.+.++|++|+ .||+..+.|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45568999999999999999999999999 999998754 689999999999999999 999999999999999
Q ss_pred eccCCCCcc
Q 031309 134 WGRNPANKQ 142 (161)
Q Consensus 134 ~a~~~~~~~ 142 (161)
+++++..+.
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 999765543
No 58
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=119.43 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH---HHhcccCCeEEEEEeCC---------CcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLR---QPFSQYGEIASVKIPVG---------KGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~---~~f~~~g~v~~~~i~~~---------~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
.......+|||+|||..+++++|+ ++|++||.|..+.++.+ +|||||+|.+.++|++|+..|||..++
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 334556799999999999999999 99999999999999865 279999999999999999999999999
Q ss_pred CeEeEEEeccCCC
Q 031309 127 KQSVRLSWGRNPA 139 (161)
Q Consensus 127 g~~i~v~~a~~~~ 139 (161)
|+.|+|+|++++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999999765
No 59
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-20 Score=122.35 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
..+.++|||+|||..+++++|+++|++||.|..+.++.+++||||+|.+.++|+.|+..|||..+.|+.|.|+|++..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 335679999999999999999999999999999999989999999999999999999999999999999999999864
No 60
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-20 Score=119.83 Aligned_cols=81 Identities=26% Similarity=0.533 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
....+.++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|||..++|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999998764 689999999999999999999999999999999
Q ss_pred EeccCCC
Q 031309 133 SWGRNPA 139 (161)
Q Consensus 133 ~~a~~~~ 139 (161)
+|+++++
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998654
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=114.54 Aligned_cols=77 Identities=34% Similarity=0.588 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~-------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
..++|||+|||.++++++|+++|++||.|..+.++. .+|||||+|.+.++|..|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999998854 3689999999999999999999999999999999999
Q ss_pred cCCC
Q 031309 136 RNPA 139 (161)
Q Consensus 136 ~~~~ 139 (161)
+++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=117.06 Aligned_cols=79 Identities=30% Similarity=0.436 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..||+..+.|+.|+|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 33456789999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred eccC
Q 031309 134 WGRN 137 (161)
Q Consensus 134 ~a~~ 137 (161)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9875
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=2.1e-19 Score=118.10 Aligned_cols=83 Identities=22% Similarity=0.463 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCcee---CCeE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVI---GKQS 129 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~---~g~~ 129 (161)
....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34566789999999999999999999999999999999774 68999999999999999999999987 8999
Q ss_pred eEEEeccCCCCc
Q 031309 130 VRLSWGRNPANK 141 (161)
Q Consensus 130 i~v~~a~~~~~~ 141 (161)
|+|.++++...+
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999976543
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1e-19 Score=124.06 Aligned_cols=82 Identities=33% Similarity=0.506 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|+..|+|..|+|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344556789999999999999999999999999999999764 68999999999999999999999999999999
Q ss_pred EEeccCCC
Q 031309 132 LSWGRNPA 139 (161)
Q Consensus 132 v~~a~~~~ 139 (161)
|+|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998754
No 65
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6e-20 Score=118.02 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCC-eEEEEEeCCCcEEEEEecCHHHHHHHHHHhCC-ceeCCeEeEEEeccCCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANRENAEEALHKLNG-TVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~-v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g-~~~~g~~i~v~~a~~~~ 139 (161)
...++|||+|||.++++++|+++|++||. |..+.+ ..+|||||+|.+.++|+.|+..||| ..++|+.|+|+|++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 45678999999999999999999999999 555554 4589999999999999999999999 99999999999999765
Q ss_pred Ccc
Q 031309 140 NKQ 142 (161)
Q Consensus 140 ~~~ 142 (161)
.+.
T Consensus 85 ~~~ 87 (93)
T 2cqh_A 85 LRS 87 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=5.3e-19 Score=115.68 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+.++|||+|||..+++++|+++|+.|| |..+.++.+ +|||||+|.+.++|+.|+ .||+..+.|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45578999999999999999999999997 999998765 589999999999999999 9999999999999999
Q ss_pred ccCCCCc
Q 031309 135 GRNPANK 141 (161)
Q Consensus 135 a~~~~~~ 141 (161)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9976543
No 67
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.3e-19 Score=120.10 Aligned_cols=78 Identities=27% Similarity=0.508 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
....+.++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|++.|||..++|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999765 689999999999999999999999999999999
Q ss_pred Eecc
Q 031309 133 SWGR 136 (161)
Q Consensus 133 ~~a~ 136 (161)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 68
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=5e-19 Score=121.68 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.......++|||+|||.++++++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344556789999999999999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEeccCCCCccC
Q 031309 132 LSWGRNPANKQA 143 (161)
Q Consensus 132 v~~a~~~~~~~~ 143 (161)
|+++++...+..
T Consensus 116 v~~a~~~~~~~~ 127 (139)
T 1u6f_A 116 VALAASGHQRPG 127 (139)
T ss_dssp EEESSCCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999997655443
No 69
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=4.6e-19 Score=117.36 Aligned_cols=78 Identities=32% Similarity=0.603 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 61 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
....++|||+|||.. +++++|+++|++||.|..+.+ .++||||+|.+.++|+.|+..|++..++|+.|+|++++++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 445689999999999 999999999999999999998 48999999999999999999999999999999999998654
Q ss_pred C
Q 031309 140 N 140 (161)
Q Consensus 140 ~ 140 (161)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 70
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-20 Score=118.86 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=68.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhC-CceeCCeEeEEEecc
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANRENAEEALHKLN-GTVIGKQSVRLSWGR 136 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~-g~~~~g~~i~v~~a~ 136 (161)
.+|||+|||..+++++|+++|++|| .|..|.++.+ +|||||+|.+.++|.+|++.++ +..++|+.|+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8999988764 6999999999999999998874 567999999999998
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
+++.
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 71
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-19 Score=115.16 Aligned_cols=80 Identities=20% Similarity=0.485 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~--~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
......++|||+|||..+++++|+++|+.||.|. +.+. ..+|||||+|.+.++|+.|+..|||..++|+.|+|++++
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3345568999999999999999999999999985 4443 458999999999999999999999999999999999998
Q ss_pred CCC
Q 031309 137 NPA 139 (161)
Q Consensus 137 ~~~ 139 (161)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.7e-19 Score=115.51 Aligned_cols=80 Identities=30% Similarity=0.488 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..++|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 446689999999999999999999999999999998763 6899999999999999999999999999999999999
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
++..
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7644
No 73
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=118.29 Aligned_cols=77 Identities=30% Similarity=0.551 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCCc
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~~ 141 (161)
++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|+.|+|+++++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999987 999999999999999999999999999999999999876543
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.6e-19 Score=117.27 Aligned_cols=82 Identities=34% Similarity=0.521 Sum_probs=73.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
......+.++|||+|||..+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|++|+..+++ .+.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 3444567789999999999999999999999999999999875 58999999999999999999998 8999999
Q ss_pred EEEeccCCC
Q 031309 131 RLSWGRNPA 139 (161)
Q Consensus 131 ~v~~a~~~~ 139 (161)
+|+|+++..
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999997643
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=2.7e-19 Score=115.62 Aligned_cols=77 Identities=22% Similarity=0.474 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999998765 69999999999999999999999999999999999997
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 643
No 76
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=116.43 Aligned_cols=80 Identities=30% Similarity=0.472 Sum_probs=72.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEeCC------CcEEEEEecCHHHHHHHHHHhCC
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNG 122 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~------~g~afv~f~~~~~a~~ai~~l~g 122 (161)
........++|||+|||.++++++|+++|++||.|.. +.+..+ +|||||+|.+.++|+.|+..|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3344566789999999999999999999999999998 888764 58999999999999999999999
Q ss_pred ceeCCeEeEEEecc
Q 031309 123 TVIGKQSVRLSWGR 136 (161)
Q Consensus 123 ~~~~g~~i~v~~a~ 136 (161)
..+.|+.|+|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-19 Score=119.02 Aligned_cols=79 Identities=23% Similarity=0.519 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
...++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|+|..+.|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999999875 4999999999999999999999999999999999998
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
++..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 78
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.6e-19 Score=122.21 Aligned_cols=84 Identities=25% Similarity=0.510 Sum_probs=75.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344556789999999999999999999999999999998765 78999999999999999999999999999999
Q ss_pred EEeccCCCCc
Q 031309 132 LSWGRNPANK 141 (161)
Q Consensus 132 v~~a~~~~~~ 141 (161)
|+|+++....
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999865443
No 79
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-19 Score=117.32 Aligned_cols=79 Identities=28% Similarity=0.441 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 61 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 61 ~~~~~~l~V~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
..+.++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|||..+.|+.|+|+++++..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 45678999999998 99999999999999999999987 8999999999999999999999999999999999998754
Q ss_pred Cc
Q 031309 140 NK 141 (161)
Q Consensus 140 ~~ 141 (161)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=117.68 Aligned_cols=82 Identities=29% Similarity=0.587 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334556789999999999999999999999999999998754 58999999999999999999999999999999
Q ss_pred EEeccCCC
Q 031309 132 LSWGRNPA 139 (161)
Q Consensus 132 v~~a~~~~ 139 (161)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998653
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=113.75 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~--~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
...+.++|||+|||..+++++|+++|++||.|..+... ..+|||||+|.+.++|++|+..||+..+.|+.|+|+|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 34567899999999999999999999999987322211 1279999999999999999999999999999999999997
Q ss_pred CCCc
Q 031309 138 PANK 141 (161)
Q Consensus 138 ~~~~ 141 (161)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 82
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=6.7e-19 Score=115.84 Aligned_cols=77 Identities=21% Similarity=0.432 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|||..+.|+.|+|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999998854 68999999999999999999999999999999999
Q ss_pred cc
Q 031309 135 GR 136 (161)
Q Consensus 135 a~ 136 (161)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=2.8e-18 Score=115.86 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
......++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|+.|+|+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566789999999999999999999999999999999874 6999999999999999999999999999999999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
++.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99875433
No 84
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=118.01 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=72.5
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCcee-----CCeEeEEEec
Q 031309 63 SNTTIFV--GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI-----GKQSVRLSWG 135 (161)
Q Consensus 63 ~~~~l~V--~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~-----~g~~i~v~~a 135 (161)
+..+||| |||+..+++++|+++|++||.|..+.++.++|||||+|.+.++|++|++.|||..+ .|++|.|.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 4568999 88999999999999999999999999988899999999999999999999999998 6889999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
+..+..
T Consensus 104 ~~~p~~ 109 (114)
T 2cq2_A 104 EKVQWS 109 (114)
T ss_dssp SCCCCS
T ss_pred ccCccc
Confidence 865443
No 85
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=115.06 Aligned_cols=79 Identities=29% Similarity=0.555 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeE-EEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS---- 129 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~-~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~---- 129 (161)
....++|||+|||.++++++|+++|++||.|. .+.++.+ +|||||+|.+.++|+.|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44568999999999999999999999999999 9998765 489999999999999999999999999999
Q ss_pred eEEEeccCCC
Q 031309 130 VRLSWGRNPA 139 (161)
Q Consensus 130 i~v~~a~~~~ 139 (161)
|+|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998754
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=116.27 Aligned_cols=83 Identities=29% Similarity=0.445 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+.. ++..++|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 344567789999999999999999999999999999998775 48999999999999999988 99999999999
Q ss_pred EEeccCCCCc
Q 031309 132 LSWGRNPANK 141 (161)
Q Consensus 132 v~~a~~~~~~ 141 (161)
|++++++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 87
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=115.97 Aligned_cols=76 Identities=17% Similarity=0.404 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCC--eEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCc----eeCCeE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIGKQS 129 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~--v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~----~~~g~~ 129 (161)
..-.+|||+|||+.+++++|+++|++||. +..|.+++| +|||||+|.+.++|.+|++.|||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34468999999999999999999999995 678888765 689999999999999999999996 589999
Q ss_pred eEEEeccC
Q 031309 130 VRLSWGRN 137 (161)
Q Consensus 130 i~v~~a~~ 137 (161)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999985
No 88
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=116.15 Aligned_cols=81 Identities=33% Similarity=0.560 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcc-cCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCce-eCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTV-IGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~-~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~-~~g~~i~v~ 133 (161)
....++|||+|||.++++++|+++|++ ||.|..+.++.+ +|||||+|.+.++|..|+..|++.. ++|+.|+|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345689999999999999999999999 999999999765 7999999999999999999999999 999999999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
++++...+
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876544
No 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=115.49 Aligned_cols=79 Identities=28% Similarity=0.374 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|++|+..|||..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456689999999999999999999999999876544432 6999999999999999999999999999999999
Q ss_pred eccCC
Q 031309 134 WGRNP 138 (161)
Q Consensus 134 ~a~~~ 138 (161)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99864
No 90
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=4.6e-19 Score=114.59 Aligned_cols=80 Identities=23% Similarity=0.514 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~---~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
..+.++|||+|||..+++++|+ ++|++||.|..+.+.. .+|||||+|.+.++|..|+..|||..+.|+.|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4466899999999999999999 9999999999998874 47999999999999999999999999999999999
Q ss_pred eccCCCC
Q 031309 134 WGRNPAN 140 (161)
Q Consensus 134 ~a~~~~~ 140 (161)
|++++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9997654
No 91
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=5.3e-19 Score=123.17 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.......++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|||..+.|+.|+|+|++
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 344556789999999999999999999999999999999887 8999999999999999999999999999999999998
Q ss_pred CCC
Q 031309 137 NPA 139 (161)
Q Consensus 137 ~~~ 139 (161)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=120.87 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|++|+ .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999753 689999999999999999 99999999999999999
Q ss_pred cCCCC
Q 031309 136 RNPAN 140 (161)
Q Consensus 136 ~~~~~ 140 (161)
++...
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 86543
No 93
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=120.01 Aligned_cols=81 Identities=17% Similarity=0.436 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~---~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
..+..+|||+|||+.+++++|+ ++|++||.|..|.+.. .+|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3456799999999999998865 6999999999998865 37999999999999999999999999999999999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
|++++...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99976543
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=7.1e-19 Score=124.48 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
....+.++|||+|||..+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999865 599999999999999999999999999999999
Q ss_pred EeccCCCCc
Q 031309 133 SWGRNPANK 141 (161)
Q Consensus 133 ~~a~~~~~~ 141 (161)
.|+++...+
T Consensus 147 ~~a~~~~~~ 155 (165)
T 1rk8_A 147 DWCFVKGPK 155 (165)
T ss_dssp EESEECC--
T ss_pred EEecCCCCC
Confidence 999865543
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=1e-18 Score=111.19 Aligned_cols=75 Identities=24% Similarity=0.498 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+ .|||..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999998764 689999999999999999 999999999999999998
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 96
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=118.43 Aligned_cols=79 Identities=27% Similarity=0.592 Sum_probs=71.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
......+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3344556789999999999999999999999999999999765 6999999999999999999999999999999
Q ss_pred EEEec
Q 031309 131 RLSWG 135 (161)
Q Consensus 131 ~v~~a 135 (161)
+|+||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 97
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2.3e-19 Score=123.26 Aligned_cols=85 Identities=26% Similarity=0.509 Sum_probs=75.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
+.....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|++|+..|+|..+.|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3344556789999999999999999999999999999998764 6899999999999999999999999999999
Q ss_pred EEEeccCCCCc
Q 031309 131 RLSWGRNPANK 141 (161)
Q Consensus 131 ~v~~a~~~~~~ 141 (161)
+|+|+++....
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999975443
No 98
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=112.22 Aligned_cols=83 Identities=28% Similarity=0.463 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~---~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
....+.++|||+|||..+++++|+++|+.|+.+..+.... .+|||||+|.+.++|+.|+..||+..|.|+.|+|+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3455678999999999999999999999886443332211 1589999999999999999999999999999999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 976544
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=110.51 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
....++|||+|||..+++++|+++|+.| .|..+.++.+ +|||||+|.+.++|..|+. ||+..++|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 9999988765 6899999999999999999 9999999999999999
Q ss_pred cCCC
Q 031309 136 RNPA 139 (161)
Q Consensus 136 ~~~~ 139 (161)
++++
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 100
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=1.7e-18 Score=121.27 Aligned_cols=81 Identities=27% Similarity=0.482 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|+..||+..|+|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999764 5899999999999999999999999999999999
Q ss_pred eccCCCC
Q 031309 134 WGRNPAN 140 (161)
Q Consensus 134 ~a~~~~~ 140 (161)
|+++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987544
No 101
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=8.5e-20 Score=116.79 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.+|||+|||.++++++|+++|++|| .|..+.++.+ +|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999988764 5899999999999999999999999999999999998
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7644
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=2e-18 Score=121.06 Aligned_cols=82 Identities=27% Similarity=0.529 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
.....++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455789999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred eccCCCCc
Q 031309 134 WGRNPANK 141 (161)
Q Consensus 134 ~a~~~~~~ 141 (161)
|++++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99976443
No 103
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-18 Score=110.97 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+. ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 334556689999999999999999999999999999998765 5899999999999999997 57899999999
Q ss_pred EEeccCCCC
Q 031309 132 LSWGRNPAN 140 (161)
Q Consensus 132 v~~a~~~~~ 140 (161)
|.+++++..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987644
No 104
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=120.29 Aligned_cols=80 Identities=20% Similarity=0.448 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE--EEEeCC------CcEEEEEecCHHHHHHHHHHhCCc----eeC
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--VKIPVG------KGCGFVQFANRENAEEALHKLNGT----VIG 126 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~--~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~----~~~ 126 (161)
.......+|||+|||+++++++|+++|++||.|.. |.|+.+ +|||||+|.+. +|..|+..|||. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 888765 59999999999 999999999999 999
Q ss_pred CeEeEEEeccCCC
Q 031309 127 KQSVRLSWGRNPA 139 (161)
Q Consensus 127 g~~i~v~~a~~~~ 139 (161)
|+.|+|+++++..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998753
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=114.20 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCC-eEEEEEe-------CCCcEEEEEecCHHHHHHHHHHhC--CceeCCeEeE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-------VGKGCGFVQFANRENAEEALHKLN--GTVIGKQSVR 131 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~-v~~~~i~-------~~~g~afv~f~~~~~a~~ai~~l~--g~~~~g~~i~ 131 (161)
.+.++|||+|||..+++++|+++|..||. |..+.++ ..+|||||+|.+.++|..|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999987 347999999999999999999996 5899999999
Q ss_pred EEeccCCCC
Q 031309 132 LSWGRNPAN 140 (161)
Q Consensus 132 v~~a~~~~~ 140 (161)
|.|+++...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987644
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=114.39 Aligned_cols=83 Identities=25% Similarity=0.427 Sum_probs=69.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
......+.++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..+ +..++|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 3444566789999999999999999999999999999999775 689999999999999999876 599999999
Q ss_pred EEEeccCCCC
Q 031309 131 RLSWGRNPAN 140 (161)
Q Consensus 131 ~v~~a~~~~~ 140 (161)
.|.++.++..
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987543
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-18 Score=113.23 Aligned_cols=81 Identities=17% Similarity=0.450 Sum_probs=73.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCcee-------
Q 031309 58 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVI------- 125 (161)
Q Consensus 58 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~------- 125 (161)
.....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344556789999999999999999999999999999998765 68999999999999999999999999
Q ss_pred -CCeEeEEEeccCC
Q 031309 126 -GKQSVRLSWGRNP 138 (161)
Q Consensus 126 -~g~~i~v~~a~~~ 138 (161)
.+++|.|.|++++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999864
No 108
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=110.72 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeCC--CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~~--~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
....++|||+|||..+++++|+++|++||.|..+ .++.+ .+.|||+|.+.++|..|+..|||..++|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3456789999999999999999999999999999 47765 35699999999999999999999999999999999987
Q ss_pred C
Q 031309 138 P 138 (161)
Q Consensus 138 ~ 138 (161)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=115.70 Aligned_cols=80 Identities=28% Similarity=0.500 Sum_probs=68.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
........++|||+|||.++++++|+++|+.|| |..+.+..+ +|||||+|.+.++|..|+ .|+|..++|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334456678999999999999999999999999 999998764 589999999999999999 99999999999
Q ss_pred eEEEeccCC
Q 031309 130 VRLSWGRNP 138 (161)
Q Consensus 130 i~v~~a~~~ 138 (161)
|+|+++++.
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999999865
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=113.71 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCe----EEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v----~~~~i~~--~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..+.++|||+|||..+++++|+++|..||.| ..+.+.. .+|||||+|.+.++|..|+..|||..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999988 5665554 379999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 031309 135 GRNPANK 141 (161)
Q Consensus 135 a~~~~~~ 141 (161)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9976544
No 111
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.5e-18 Score=110.47 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
..++|||+|||..+++++|+++|++| .|..+.+...+|||||+|.+.++|+.|+..|||..++|+.|+|+|+...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45789999999999999999999999 9999988877899999999999999999999999999999999999754
No 112
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.6e-18 Score=115.43 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~---~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|||..++|+.|.|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34679999999999999999999999999999999764 689999999999999999999999999999999999864
No 113
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=8.7e-19 Score=117.09 Aligned_cols=78 Identities=23% Similarity=0.415 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeE-----eEEEecc
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQS-----VRLSWGR 136 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~-----i~v~~a~ 136 (161)
...++|||+|||.++++++|+++|.+||.|..+.|+.+ |||||+|.+.++|+.||..|||..|+|+. |+|..+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45689999999999999999999999999999999877 99999999999999999999999999998 8888877
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
+...
T Consensus 93 ~~~~ 96 (115)
T 3beg_B 93 PRSP 96 (115)
T ss_dssp ----
T ss_pred CCCC
Confidence 6433
No 114
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.8e-19 Score=116.62 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCC-e
Q 031309 62 SSNTTIFVGGLDP------NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK-Q 128 (161)
Q Consensus 62 ~~~~~l~V~nlp~------~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g-~ 128 (161)
..+++|||+|||. .+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|.+|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 9999999999999999999998753 6999999999999999999999999999 9
Q ss_pred EeEEEeccCC
Q 031309 129 SVRLSWGRNP 138 (161)
Q Consensus 129 ~i~v~~a~~~ 138 (161)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 115
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-19 Score=117.01 Aligned_cols=79 Identities=29% Similarity=0.538 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 44578999999999999999999999999999998754 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 031309 136 RNPAN 140 (161)
Q Consensus 136 ~~~~~ 140 (161)
++...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 97644
No 116
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=115.01 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.+.++|||+|||..+++++|+++|..||.|..+.++.+ +|||||+|.+.++|..|+.. ++..++|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999999999875 58999999999999999977 999999999999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 976544
No 117
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=122.49 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..++|||+|||.++++++|+++|+.|| .|..+.++.+ +|||||+|.+.++|+.||..|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999998765 58999999999999999999999999999999999
Q ss_pred ccCC
Q 031309 135 GRNP 138 (161)
Q Consensus 135 a~~~ 138 (161)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 118
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=114.49 Aligned_cols=77 Identities=18% Similarity=0.387 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
......+|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+. +++..++|+.|.|.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3455689999999999999999999999999999999874 6999999999999999997 999999999999999
Q ss_pred ccC
Q 031309 135 GRN 137 (161)
Q Consensus 135 a~~ 137 (161)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 775
No 119
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.7e-18 Score=116.84 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+.++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+ .|||..++|+.|+|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999998754 689999999999999999 899999999999999999
Q ss_pred CCCCc
Q 031309 137 NPANK 141 (161)
Q Consensus 137 ~~~~~ 141 (161)
+....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76544
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-19 Score=112.04 Aligned_cols=76 Identities=32% Similarity=0.521 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|||..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999998875 689999999999999999999999999999988776
Q ss_pred cC
Q 031309 136 RN 137 (161)
Q Consensus 136 ~~ 137 (161)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 121
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=113.65 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhcccCCeEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCceeCCe-
Q 031309 60 GDSSNTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ- 128 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~------~~~~l~~~f~~~g~v~~~~i~~----~~g~afv~f~~~~~a~~ai~~l~g~~~~g~- 128 (161)
.....++|||+|||..+ ++++|+++|++||.|..+.++. .+|||||+|.+.++|..|+..|||..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34456899999999999 7899999999999999999874 379999999999999999999999999998
Q ss_pred EeEEEeccCC
Q 031309 129 SVRLSWGRNP 138 (161)
Q Consensus 129 ~i~v~~a~~~ 138 (161)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999753
No 122
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=110.64 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~--~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
....+.++|||+|||..+++++|+++|+.||.|..+ ... .+|||||+|.+.++|..|+..|+|..++|+.|+|++++
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 345567899999999999999999999999988777 222 27999999999999999999999999999999999998
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7543
No 123
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-17 Score=113.07 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcE-EEEEecCHHHHHHHHHHhCCceeCC--eEeEEEeccCCC
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGRNPA 139 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~-afv~f~~~~~a~~ai~~l~g~~~~g--~~i~v~~a~~~~ 139 (161)
....|||+||++.+++++|+++|++||.|..|.+....|| |||+|.+.++|..|++.|||..|.| +.|+|.+++++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3456899999999999999999999999999988655686 9999999999999999999999987 699999999764
Q ss_pred C
Q 031309 140 N 140 (161)
Q Consensus 140 ~ 140 (161)
.
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 124
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-18 Score=111.16 Aligned_cols=80 Identities=28% Similarity=0.406 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~-~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
+.....++|||+|||+.+++++|+++|..||.|.. +.|+.+ +|||||+|.+.++|++|+.. ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34456789999999999999999999999999987 777643 69999999999999999977 999999999999
Q ss_pred EeccCCC
Q 031309 133 SWGRNPA 139 (161)
Q Consensus 133 ~~a~~~~ 139 (161)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987543
No 125
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=4e-18 Score=108.04 Aligned_cols=75 Identities=23% Similarity=0.512 Sum_probs=68.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+ .+++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999998764 589999999999999999 458889999999998
Q ss_pred ec
Q 031309 134 WG 135 (161)
Q Consensus 134 ~a 135 (161)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 126
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.77 E-value=2.8e-18 Score=115.67 Aligned_cols=80 Identities=26% Similarity=0.495 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
.....++|||+|+ ++++++|+++|++||.|..+.+...+|||||+|.+.++|..|+..|+|..+.|+.|+|.|++++.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 3456789999996 69999999999999999999999889999999999999999999999999999999999999764
Q ss_pred Cc
Q 031309 140 NK 141 (161)
Q Consensus 140 ~~ 141 (161)
..
T Consensus 113 ~~ 114 (121)
T 2bz2_A 113 ML 114 (121)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 127
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.5e-19 Score=113.16 Aligned_cols=76 Identities=26% Similarity=0.303 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
+..++|||+|||..+++++|+++|.+||.|..+.++. .+|||||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3458999999999999999999999999987665543 2689999999999999999999999999999999988
Q ss_pred cC
Q 031309 136 RN 137 (161)
Q Consensus 136 ~~ 137 (161)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 128
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=5e-18 Score=119.57 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHHhCCceeCC--eEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~--~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~i~v~~a~ 136 (161)
.....+|||+||++.+++++|+++|++||.|.+|.+..+ ++||||+|.+.++|+.|++.|||..|.| +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 445678999999999999999999999999999988643 6799999999999999999999999965 999999999
Q ss_pred CCC
Q 031309 137 NPA 139 (161)
Q Consensus 137 ~~~ 139 (161)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=1.2e-17 Score=113.64 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-CCcE-EEEEecCHHHHHHHHHHhCCceeCC--eEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGC-GFVQFANRENAEEALHKLNGTVIGK--QSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~-~~g~-afv~f~~~~~a~~ai~~l~g~~~~g--~~i~v~~a~ 136 (161)
......|||+||++.+++++|+++|++||.|.+|.+.. .+|+ |||+|.+.++|..|++.|||..|.| +.|+|+|++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 34557899999999999999999999999999998765 3677 9999999999999999999999988 899999999
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
+...
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 7643
No 130
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=107.65 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=67.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCc-EEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g-~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
....+|||+|||..+++++|+++|++||.|..|.+....+ ||||+|.+.++|..|+. |+|..++|+.|.|.++.+...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3457999999999999999999999999999983333222 99999999999999998 999999999999999875433
No 131
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=112.80 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCe-EEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v-~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+.++|||+|||..+++++|+++|+.||.| ..|.|+.+ +|||||+|.+.++|++|+.. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567899999999999999999999999999 77888763 79999999999999999976 9999999999999
Q ss_pred eccCC
Q 031309 134 WGRNP 138 (161)
Q Consensus 134 ~a~~~ 138 (161)
++.+.
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99754
No 132
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=8e-18 Score=106.52 Aligned_cols=72 Identities=22% Similarity=0.476 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~----g-------~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
...++|||+|||.++++++|+++|++| | .|..+.+..++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 356899999999999999999999999 8 9999999999999999999999999999 999999999999
Q ss_pred EEEe
Q 031309 131 RLSW 134 (161)
Q Consensus 131 ~v~~ 134 (161)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9873
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=109.48 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....++|||+|||+.+++++|+++|+.||.+ .|.|+.+ +|||||+|.+.++|++|| .+|+..++|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 34566899999999999999999999999954 8888764 689999999999999999 5899999999999999
Q ss_pred ccCCCC
Q 031309 135 GRNPAN 140 (161)
Q Consensus 135 a~~~~~ 140 (161)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 886543
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=108.28 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=68.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE-----EEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-----VKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~-----~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....++|||+|||.++++++|+++|+.||.|.. ......+|||||+|.+.++|++|+. |||..+.|+.|+|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3456789999999999999999999999997655 1222348999999999999999998 999999999999999
Q ss_pred ccCCCC
Q 031309 135 GRNPAN 140 (161)
Q Consensus 135 a~~~~~ 140 (161)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987543
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=8.3e-18 Score=112.81 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCC---eEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~---v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
..+.++|||+|||+++++++|+++|+.||. |..|.|+.+ +|||||+|.+.++|++|+. +|+..++|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 888888754 6899999999999999998 9999999999999
Q ss_pred EeccC
Q 031309 133 SWGRN 137 (161)
Q Consensus 133 ~~a~~ 137 (161)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 136
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=106.15 Aligned_cols=76 Identities=36% Similarity=0.524 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCce--eCCeEeEEEeccC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTV--IGKQSVRLSWGRN 137 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~--~~g~~i~v~~a~~ 137 (161)
....++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++ +++.. +.|+.|.|.++++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 456789999999999999999999999999999999875 8999999999999883 56655 4699999999987
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.7e-18 Score=105.90 Aligned_cols=69 Identities=30% Similarity=0.527 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
+|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+. +++..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999988764 5899999999999999996 9999999999999886
No 138
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=2.2e-17 Score=120.81 Aligned_cols=77 Identities=22% Similarity=0.411 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLD-PNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp-~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
.++++|||+||| ..+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|+.|++.|||..+.|+.|+|.+++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 356799999999 89999999999999999999999876 799999999999999999999999999999999999753
No 139
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1.1e-18 Score=111.29 Aligned_cols=75 Identities=31% Similarity=0.520 Sum_probs=66.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.+ |..|+..|||..++|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999764 689999999999 99999999999999999999999875
Q ss_pred CC
Q 031309 139 AN 140 (161)
Q Consensus 139 ~~ 140 (161)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 140
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=106.86 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhcccCCeEEEEEeC----CCcEEEEEecCHHHHHHHHHHhCCceeCCe-EeEE
Q 031309 64 NTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQ-SVRL 132 (161)
Q Consensus 64 ~~~l~V~nlp~~~------~~~~l~~~f~~~g~v~~~~i~~----~~g~afv~f~~~~~a~~ai~~l~g~~~~g~-~i~v 132 (161)
+++|||+|||..+ ++++|+++|++||.|..+.++. .+|||||+|.+.++|..|+..|||..++|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 6799999999999999999874 279999999999999999999999999999 8876
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=9.5e-18 Score=115.26 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCC---eEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~---v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
+...+.++|||+|||+++++++|+++|+.||. |..|.|+.+ +|||||+|.+.++|++|+. +|+..++|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34556789999999999999999999999998 788888754 6899999999999999998 99999999999
Q ss_pred EEEeccC
Q 031309 131 RLSWGRN 137 (161)
Q Consensus 131 ~v~~a~~ 137 (161)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999864
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=108.47 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
..+..+|||+|||+.+++++|+++|+.| .|..|.|+.+ +|||||+|.+.++|++|+ .+|+..++|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4456899999999999999999999999 8999998764 699999999999999999 79999999999999888
Q ss_pred cC
Q 031309 136 RN 137 (161)
Q Consensus 136 ~~ 137 (161)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 143
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.6e-18 Score=105.25 Aligned_cols=70 Identities=26% Similarity=0.526 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999998775 5899999999999999999999 9999999999987
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=115.19 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEe---CCCcEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIP---VGKGCGFVQFANRENAEEALHKLNGTVIGKQS 129 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~---~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~ 129 (161)
..+.++|||+|||..+++++|+.+|+.||.|.. +.+. ..+|||||+|.+.++|..|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345579999999999999999999999998765 3322 34799999999999999999999999999999
Q ss_pred eEEEeccCCCCc
Q 031309 130 VRLSWGRNPANK 141 (161)
Q Consensus 130 i~v~~a~~~~~~ 141 (161)
|.|.|+++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999875433
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-18 Score=114.15 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeC-----CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~-----~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
...+.++|||+|||+.+++++|+++|..||.|..+ .+.. .+|||||+|.+.++|..||. ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999998763 3321 26999999999999999998 99999999999999
Q ss_pred eccCC
Q 031309 134 WGRNP 138 (161)
Q Consensus 134 ~a~~~ 138 (161)
++.+.
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=4.1e-17 Score=119.64 Aligned_cols=78 Identities=32% Similarity=0.561 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
.+.++|||+|||.++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999764 589999999999999999999999999999999998
Q ss_pred cCCC
Q 031309 136 RNPA 139 (161)
Q Consensus 136 ~~~~ 139 (161)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7543
No 147
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=104.28 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCCHHH----HHHHhcccC-CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 63 SNTTIFVGGLDPNVTDED----LRQPFSQYG-EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~----l~~~f~~~g-~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
..+.|||+|||+.+++++ |+++|++|| .|..|. .|+|||.|.+.++|..|++.|+|..+.|++|+|.+|+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 334499999999999987 568999995 999982 49999999999999999999999999999999999997
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
...
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 644
No 148
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=105.11 Aligned_cols=78 Identities=32% Similarity=0.504 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN 140 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~ 140 (161)
...++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++++. ....+.|+.|.|.+++++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 34689999999999999999999999999999999875 8999999999999975432 13445899999999987654
Q ss_pred c
Q 031309 141 K 141 (161)
Q Consensus 141 ~ 141 (161)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-19 Score=118.05 Aligned_cols=81 Identities=31% Similarity=0.469 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeC
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANRENAEEALHKLNGTVIG 126 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~--------~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~ 126 (161)
..+.++|||+|||..+++++|+++|++||.|.. +.++.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456689999999999999999999999999988 777654 689999999999999999999999999
Q ss_pred CeEeEEEeccCCCCc
Q 031309 127 KQSVRLSWGRNPANK 141 (161)
Q Consensus 127 g~~i~v~~a~~~~~~ 141 (161)
|+.|+|++++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876554
No 150
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.8e-17 Score=123.60 Aligned_cols=79 Identities=28% Similarity=0.581 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCcee------
Q 031309 61 DSSNTTIFVGGLDPNV---------TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVI------ 125 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~---------~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~------ 125 (161)
....++|||+||+..+ ++++|+.+|++||.|..|.++.++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 5567899999999998 6999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEeEEEeccCCC
Q 031309 126 ------GKQSVRLSWGRNPA 139 (161)
Q Consensus 126 ------~g~~i~v~~a~~~~ 139 (161)
.|+.|.|.||+..+
T Consensus 211 e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGSCCCEEEECC---
T ss_pred cccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 151
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.71 E-value=1.1e-16 Score=120.79 Aligned_cols=82 Identities=29% Similarity=0.573 Sum_probs=76.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 57 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 57 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
........++|||+|||.++++++|+++|+.||.|..+.+.+++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 44445667899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-16 Score=111.14 Aligned_cols=79 Identities=28% Similarity=0.616 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.......+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 44556789999999999999999999999999999998754 689999999999999999999999999999999
Q ss_pred EeccC
Q 031309 133 SWGRN 137 (161)
Q Consensus 133 ~~a~~ 137 (161)
.||+.
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 153
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=5.7e-17 Score=116.05 Aligned_cols=79 Identities=20% Similarity=0.425 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....++|||+|||..+++++|+++|+.||.|..|.+..+ +|||||+|.+.++|..|+..|+|..++|+.|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3455789999999999999999999999999999999764 69999999999999999999999999999999999
Q ss_pred ccCC
Q 031309 135 GRNP 138 (161)
Q Consensus 135 a~~~ 138 (161)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9864
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=109.55 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCC---eEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~---v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.....++|||+|||+++++++|+++|+.||. |..|.|+.+ +|||||+|.+.++|++|+. +|+..++|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999987 888988764 6899999999999999998 999999999999
Q ss_pred EEeccCC
Q 031309 132 LSWGRNP 138 (161)
Q Consensus 132 v~~a~~~ 138 (161)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1.6e-16 Score=111.18 Aligned_cols=77 Identities=34% Similarity=0.610 Sum_probs=71.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC------cEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~------g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
.++|||+|||..+++++|+++|+.||.|..+.+..++ |||||+|.+.++|..|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999987754 8999999999999999999999999999999999986
Q ss_pred CCC
Q 031309 138 PAN 140 (161)
Q Consensus 138 ~~~ 140 (161)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 156
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.3e-17 Score=122.63 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccC--CeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g--~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
..++|||+|||..+++++|+++|++|| .|..|.|+.+ +|||||+|.+.++|++||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999998765 58999999999999999999999999999999999
Q ss_pred ccC
Q 031309 135 GRN 137 (161)
Q Consensus 135 a~~ 137 (161)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=8.9e-17 Score=117.84 Aligned_cols=76 Identities=33% Similarity=0.587 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
...+|||+|||..+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.+++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4568999999999999999999999999999998764 689999999999999999999999999999999999874
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.4e-16 Score=116.18 Aligned_cols=80 Identities=23% Similarity=0.513 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
....+|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..++|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34579999999999999999999999999999998765 689999999999999999999999999999999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
++++..
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 976443
No 159
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=1.9e-16 Score=127.62 Aligned_cols=78 Identities=22% Similarity=0.464 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...++|||+|||..+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|..||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44679999999999999999999999999999998764 699999999999999999999999999999999999
Q ss_pred cCCC
Q 031309 136 RNPA 139 (161)
Q Consensus 136 ~~~~ 139 (161)
++..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8643
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=2.9e-16 Score=112.98 Aligned_cols=78 Identities=21% Similarity=0.495 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|||..++|+.|.|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56689999999999999999999999999999998765 689999999999999999999999999999999999
Q ss_pred cCCC
Q 031309 136 RNPA 139 (161)
Q Consensus 136 ~~~~ 139 (161)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9764
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=2.2e-16 Score=110.74 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+.++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4578999999999999999999999999999988754 4899999999999999999999999999999999998
Q ss_pred CCCC
Q 031309 137 NPAN 140 (161)
Q Consensus 137 ~~~~ 140 (161)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7543
No 162
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.7e-17 Score=102.19 Aligned_cols=69 Identities=28% Similarity=0.637 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
+|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+. +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999988764 6899999999999999996 5899999999999875
No 163
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=4.6e-16 Score=118.11 Aligned_cols=76 Identities=24% Similarity=0.436 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC-cEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEEecc
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGR 136 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~-g~afv~f~~~~~a~~ai~~l~g~~~~-g~~i~v~~a~ 136 (161)
....++|||+|||..+++++|+++|++||.|..+.+..++ |||||+|.+.++|..|+..|||..+. |+.|+|+|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3456899999999999999999999999999999998875 99999999999999999999999999 9999999987
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.2e-17 Score=113.79 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
...+..+|||+|||+++++++|+++|++|| +..|.|+.+ +|||||+|.+.++|++|| .+|+..+.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 668988764 689999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 031309 135 GRNPAN 140 (161)
Q Consensus 135 a~~~~~ 140 (161)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 886543
No 165
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=4.6e-17 Score=106.13 Aligned_cols=76 Identities=28% Similarity=0.512 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
....++|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|+.|+. ++..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345689999999999999999999999999999998774 5999999999999999997 999999999999998
Q ss_pred cCC
Q 031309 136 RNP 138 (161)
Q Consensus 136 ~~~ 138 (161)
.+.
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 754
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.9e-16 Score=109.04 Aligned_cols=75 Identities=32% Similarity=0.579 Sum_probs=70.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCC
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPA 139 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~ 139 (161)
++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999765 5899999999999999999999999999999999997654
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=3.4e-16 Score=115.92 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 031309 60 GDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~ 137 (161)
...+.++|||+|||. .+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.++++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 345678999999999 9999999999999999999999887 59999999999999999999999999999999999986
Q ss_pred C
Q 031309 138 P 138 (161)
Q Consensus 138 ~ 138 (161)
.
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=1.3e-16 Score=108.11 Aligned_cols=76 Identities=32% Similarity=0.438 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeE--EEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~--~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
......+|||+|||+.+++++|+++|+.| .|. .|.|+.+ +|||||+|.+.++|++|+. +++..++|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34566889999999999999999999999 677 8888764 6999999999999999996 5789999999999
Q ss_pred EeccC
Q 031309 133 SWGRN 137 (161)
Q Consensus 133 ~~a~~ 137 (161)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=3.5e-16 Score=110.23 Aligned_cols=75 Identities=19% Similarity=0.496 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....+|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..++|+.|.|+|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 345689999999999999999999999999999998765 58999999999999999999999999999999999
Q ss_pred c
Q 031309 135 G 135 (161)
Q Consensus 135 a 135 (161)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=6.2e-16 Score=111.11 Aligned_cols=79 Identities=25% Similarity=0.451 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
.....++|||+|||.++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 3456789999999999999999999999999999998764 58999999999999999965 9999999999999
Q ss_pred eccCCC
Q 031309 134 WGRNPA 139 (161)
Q Consensus 134 ~a~~~~ 139 (161)
++.+..
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987653
No 171
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=111.18 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g-~v~~~~i~~-~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~i~v~~a~~~ 138 (161)
++..+|||+|||..+++++|+++|++|| .|..+.+.. ++|+|||+|.+.++|..|+..|||..+. |+.|+|.|++++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4578999999999999999999999999 999999854 6899999999999999999999999999 999999999864
No 172
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=1.4e-15 Score=112.62 Aligned_cols=77 Identities=25% Similarity=0.466 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEe-CCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEEeccCC
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIP-VGKGCGFVQFANRENAEEALHKLNGTVIG-KQSVRLSWGRNP 138 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g-~v~~~~i~-~~~g~afv~f~~~~~a~~ai~~l~g~~~~-g~~i~v~~a~~~ 138 (161)
.+..+|||+|||..+++++|+++|++|| .|..+.+. .++|||||+|.+.++|.+|+..|+|..+. |+.|+|.|++++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4468999999999999999999999999 99999984 47899999999999999999999999999 999999999874
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1.4e-15 Score=115.41 Aligned_cols=79 Identities=24% Similarity=0.516 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeC---CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~g~v~~~~i~~---~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~ 133 (161)
....++|||+|||..+++++|+ ++|+.||.|..|.+.. .+|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4567899999999999999966 8999999999999876 37999999999999999999999999999999999
Q ss_pred eccCCC
Q 031309 134 WGRNPA 139 (161)
Q Consensus 134 ~a~~~~ 139 (161)
|++...
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 997654
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=103.91 Aligned_cols=74 Identities=20% Similarity=0.420 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~---------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
...++|||+|||..+++++|+++|++||.|. +.++. .+|||||+|.+.++|++|+..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567899999999999999999999999999 66653 26899999999999999999884 367777777
Q ss_pred EeccCC
Q 031309 133 SWGRNP 138 (161)
Q Consensus 133 ~~a~~~ 138 (161)
..+.+.
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 655543
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=1.3e-15 Score=107.69 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe--CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~--~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.......+|||+|||..+++++|+++|++||.|..+ .. ..+|||||+|.+.++|.+|+..|||..++|+.|.|+|++
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 344567899999999999999999999999998877 21 237999999999999999999999999999999999998
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=1.2e-15 Score=109.58 Aligned_cols=79 Identities=22% Similarity=0.459 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWG 135 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a 135 (161)
....+|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..++|+.|.|.|+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 45589999999999999999999999999999998764 68999999999999999975 899999999999999
Q ss_pred cCCCCc
Q 031309 136 RNPANK 141 (161)
Q Consensus 136 ~~~~~~ 141 (161)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 876544
No 177
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.5e-15 Score=97.67 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCCCCC-----------HHHHHHHhcccCCeEEEEEeC--CCcEEEEEecCHHHHHHHHHHhCCceeCC
Q 031309 61 DSSNTTIFVGGLDPNVT-----------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANRENAEEALHKLNGTVIGK 127 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~-----------~~~l~~~f~~~g~v~~~~i~~--~~g~afv~f~~~~~a~~ai~~l~g~~~~g 127 (161)
..+..+|+|.||..... +++|+++|++||.|..+.|.. .+|||||+|.+.++|..|+..|||..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44577899999954432 579999999999999997753 37999999999999999999999999999
Q ss_pred eEeEEEeccCCCC
Q 031309 128 QSVRLSWGRNPAN 140 (161)
Q Consensus 128 ~~i~v~~a~~~~~ 140 (161)
+.|+|.++.+...
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999987543
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=6e-16 Score=111.72 Aligned_cols=76 Identities=30% Similarity=0.528 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 63 SNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 63 ~~~~l~V~nlp~-~~~~~~l~~~f~~~g~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
+.++|||+|||. .+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.++++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 357999999999 9999999999999999999999887 599999999999999999999999999999999999865
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=2e-15 Score=105.81 Aligned_cols=75 Identities=29% Similarity=0.538 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCC--eEeEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGK--QSVRL 132 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g--~~i~v 132 (161)
.....+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|||..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 456789999999999999999999999999999998765 4899999999999999999999999987 99999
Q ss_pred Eec
Q 031309 133 SWG 135 (161)
Q Consensus 133 ~~a 135 (161)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 180
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.64 E-value=1.6e-15 Score=106.75 Aligned_cols=75 Identities=21% Similarity=0.447 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~----g-------~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
+.++|||+|||.++++++|+++|++| | .|..+.+..++|||||+|.+.++|..|+ .++|..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46799999999999999999999999 7 8899999999999999999999999999 9999999999999
Q ss_pred EEeccCC
Q 031309 132 LSWGRNP 138 (161)
Q Consensus 132 v~~a~~~ 138 (161)
|.++...
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9998754
No 181
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=106.06 Aligned_cols=75 Identities=27% Similarity=0.330 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCe----EEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v----~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.+..+|||+|||+++++++|+++|++||.| ..|.|+.+ +|||||+|.+.++|++|+.. |+..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456799999999999999999999999875 57777653 69999999999999999975 999999999999
Q ss_pred EeccC
Q 031309 133 SWGRN 137 (161)
Q Consensus 133 ~~a~~ 137 (161)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=4.6e-16 Score=109.10 Aligned_cols=75 Identities=21% Similarity=0.480 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
...+|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+. +++..++|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 3568999999999999999999999999999998765 5899999999999999997 89999999999999998
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.5e-15 Score=106.98 Aligned_cols=76 Identities=25% Similarity=0.556 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeC---CeEeEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIG---KQSVRL 132 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~i~v 132 (161)
.....+|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+. |++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 346789999999999999999999999999999998775 689999999999999999999998775 499999
Q ss_pred Eecc
Q 031309 133 SWGR 136 (161)
Q Consensus 133 ~~a~ 136 (161)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 184
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.4e-15 Score=109.56 Aligned_cols=77 Identities=25% Similarity=0.526 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
..++|||+|||.++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4579999999999999999999999999999999764 6999999999999999999999999999999999887
Q ss_pred CCC
Q 031309 137 NPA 139 (161)
Q Consensus 137 ~~~ 139 (161)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 185
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=3.5e-15 Score=107.32 Aligned_cols=75 Identities=20% Similarity=0.431 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~----g-------~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
..++|||+|||..+++++|+++|+.| | .|..+.+..++|||||+|.+.++|..|+ .|||..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 45799999999999999999999999 6 7888888889999999999999999999 8999999999999
Q ss_pred EEeccCC
Q 031309 132 LSWGRNP 138 (161)
Q Consensus 132 v~~a~~~ 138 (161)
|.++...
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998754
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=3.4e-15 Score=104.34 Aligned_cols=75 Identities=35% Similarity=0.654 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeE--eEE
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQS--VRL 132 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~--i~v 132 (161)
.....+|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|||..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 445689999999999999999999999999999988764 589999999999999999999999999964 888
Q ss_pred Eec
Q 031309 133 SWG 135 (161)
Q Consensus 133 ~~a 135 (161)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.1e-15 Score=107.74 Aligned_cols=74 Identities=18% Similarity=0.370 Sum_probs=67.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
.++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..+ +..++|+.|.|.|++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 579999999999999999999999999999998763 699999999999999999655 46999999999998753
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=2.7e-15 Score=105.73 Aligned_cols=76 Identities=28% Similarity=0.508 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC--------CCcEEEEEecCHHHHHHHHHHhCCceeC---CeEeE
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--------GKGCGFVQFANRENAEEALHKLNGTVIG---KQSVR 131 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~--------~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~~i~ 131 (161)
+.++|||+|||..+++++|+++|++||.|..+.++. .+|||||+|.+.++|..|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 567999999999999999999999999999998874 3589999999999999999999998775 67888
Q ss_pred EEeccCC
Q 031309 132 LSWGRNP 138 (161)
Q Consensus 132 v~~a~~~ 138 (161)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887754
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=1.1e-14 Score=95.60 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 63 SNTTIFVGGLDP-----NVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 63 ~~~~l~V~nlp~-----~~~~~~l~~~f~~~g~v~~~~i~~~-------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
+...|+|.||.. +-.+++|++.|++||.|.++.++.+ +|++||+|.+.++|.+|+..|||..+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456899999963 2367899999999999999998753 6999999999999999999999999999999
Q ss_pred EEEeccC
Q 031309 131 RLSWGRN 137 (161)
Q Consensus 131 ~v~~a~~ 137 (161)
.|.++.+
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999875
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4.9e-15 Score=112.53 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 61 DSSNTTIFVGGLDPNV-TDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~-~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.....+|||+|||..+ ++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|..|+..|||..++|+.|+|.|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567899999999995 99999999999999999998775 79999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 031309 135 GRNPANK 141 (161)
Q Consensus 135 a~~~~~~ 141 (161)
+.+...+
T Consensus 261 a~~~~~~ 267 (284)
T 3smz_A 261 CAPGPPG 267 (284)
T ss_dssp CCSSSCH
T ss_pred ecCCCcc
Confidence 9876553
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.4e-15 Score=101.31 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=64.9
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecC----HHH----HHHHHH--HhCCce
Q 031309 65 TTIFVGGL----DPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN----REN----AEEALH--KLNGTV 124 (161)
Q Consensus 65 ~~l~V~nl----p~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~----~~~----a~~ai~--~l~g~~ 124 (161)
..|||+|| |+.+++.+|+++|+.||+|.++.++.| +|||||+|.+ .++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999876 6999999996 333 788888 789999
Q ss_pred eCCeEeEEEeccC
Q 031309 125 IGKQSVRLSWGRN 137 (161)
Q Consensus 125 ~~g~~i~v~~a~~ 137 (161)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998774
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=1.2e-14 Score=110.30 Aligned_cols=75 Identities=21% Similarity=0.386 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
+.++|||+|||.++++++|+++|+.|| |..+.+...+|||||+|.+.++|..|+..|+|..+.|+.|.|.++.+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 457999999999999999999999999 999999888999999999999999999999999999999999997643
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=7.6e-15 Score=111.91 Aligned_cols=78 Identities=27% Similarity=0.623 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 60 GDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~-------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
......+|||+|||.. +++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+ .|||..++|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 999999999999999999998653 689999999999999999 9999999999999
Q ss_pred EEeccCC
Q 031309 132 LSWGRNP 138 (161)
Q Consensus 132 v~~a~~~ 138 (161)
|.|++++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=2.4e-14 Score=101.16 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCe-----EEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-----ASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v-----~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
...+.++|||+|||.++++++|+++|..||.+ ........+|||||+|.+.++|..|+ .|+|..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 45567899999999999999999999998743 33444456899999999999999999 5999999999999999
Q ss_pred ccCCC
Q 031309 135 GRNPA 139 (161)
Q Consensus 135 a~~~~ 139 (161)
+.+..
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 98653
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=1.1e-14 Score=101.93 Aligned_cols=74 Identities=23% Similarity=0.542 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~------~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
+.++|||+|||.++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+.. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4679999999999999999999999999999998765 58999999999999999974 678999999999887
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=9.4e-15 Score=111.38 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 59 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
......++|||+|||..+++++|+++|+.||.|..|.+..+ +|||||+|.+.++|..|+ .++|..+.|+.|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE
Confidence 34566789999999999999999999999999999999773 799999999999999999 5999999999999999
Q ss_pred ccCC
Q 031309 135 GRNP 138 (161)
Q Consensus 135 a~~~ 138 (161)
+...
T Consensus 115 ~~~~ 118 (292)
T 2ghp_A 115 LTEC 118 (292)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8644
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=2.3e-14 Score=111.95 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=67.4
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeC---Ce--EeEEE
Q 031309 61 DSSNTTIFVGG--LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIG---KQ--SVRLS 133 (161)
Q Consensus 61 ~~~~~~l~V~n--lp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~---g~--~i~v~ 133 (161)
..+..+|||+| |+..+++++|+++|++||.|..|.+..++|||||+|.+.++|++|++.|||..+. |+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 34557899999 5789999999999999999999999889999999999999999999999999872 44 68888
Q ss_pred ecc
Q 031309 134 WGR 136 (161)
Q Consensus 134 ~a~ 136 (161)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 875
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=2e-14 Score=105.03 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcccCCe--EEEEEeCC----CcEEEEEecCHHHHHHHHHHhCCceeCCe----EeE
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI--ASVKIPVG----KGCGFVQFANRENAEEALHKLNGTVIGKQ----SVR 131 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v--~~~~i~~~----~g~afv~f~~~~~a~~ai~~l~g~~~~g~----~i~ 131 (161)
.+..+|||+|||+.+++++|+++|++||.| ..+.+..+ +|+|||+|.+.++|..||..|||..+.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 346789999999999999999999999998 88888765 48999999999999999999999999876 566
Q ss_pred EEec
Q 031309 132 LSWG 135 (161)
Q Consensus 132 v~~a 135 (161)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6654
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-13 Score=88.46 Aligned_cols=66 Identities=21% Similarity=0.404 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHhcccCCeEEEEEeC-CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCCCCc
Q 031309 74 PNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANK 141 (161)
Q Consensus 74 ~~~~~~~l~~~f~~~g~v~~~~i~~-~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~~~~ 141 (161)
..+++++|+++|++||.|..|.++. .+|||||+|.+.++|..|+..+++ +.|++|+|.|+++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 4589999999999999999999874 589999999999999999987554 67999999999976543
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=2.3e-13 Score=89.28 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=64.6
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhCCce
Q 031309 63 SNTTIFVGGL--DPNVT--------DEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTV 124 (161)
Q Consensus 63 ~~~~l~V~nl--p~~~~--------~~~l~~~f~~~g~v~~~~i~~~--------~g~afv~f~~~~~a~~ai~~l~g~~ 124 (161)
+...|.+.|+ |.... +++|++.|++||.|.++.|+++ +|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889988 33333 2689999999999999999764 5999999999999999999999999
Q ss_pred eCCeEeEEEeccC
Q 031309 125 IGKQSVRLSWGRN 137 (161)
Q Consensus 125 ~~g~~i~v~~a~~ 137 (161)
++|+.|+|++...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.6e-13 Score=103.33 Aligned_cols=76 Identities=29% Similarity=0.422 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCC-ceeC---CeEeEEE
Q 031309 63 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNG-TVIG---KQSVRLS 133 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g-~~~~---g~~i~v~ 133 (161)
+..+|||+|||..+++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+..|++ ..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 4679999999999999999999999999999998765 69999999999999999999954 4444 9999999
Q ss_pred eccCC
Q 031309 134 WGRNP 138 (161)
Q Consensus 134 ~a~~~ 138 (161)
++.+.
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98864
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.5e-14 Score=93.80 Aligned_cols=67 Identities=25% Similarity=0.486 Sum_probs=59.2
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 69 VGGLDPNVTDEDLRQPF------------SQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 69 V~nlp~~~~~~~l~~~f------------~~~g~v~~~~i~~~-----~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
+.|||..+++++|++.| ++||.|..+.++.+ +|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777777666 99999999999875 69999999999999999999999999999999
Q ss_pred EEec
Q 031309 132 LSWG 135 (161)
Q Consensus 132 v~~a 135 (161)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=1.2e-12 Score=87.65 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHHhcccCCeEEEEEeCC----------CcEEEEEecCHHHHHHHHHHhCCceeCC
Q 031309 63 SNTTIFVGGLDP--NV---TDEDLRQPFSQYGEIASVKIPVG----------KGCGFVQFANRENAEEALHKLNGTVIGK 127 (161)
Q Consensus 63 ~~~~l~V~nlp~--~~---~~~~l~~~f~~~g~v~~~~i~~~----------~g~afv~f~~~~~a~~ai~~l~g~~~~g 127 (161)
+...|++.|+-. .+ -+++|++.|++||.|.+|.|+.+ +|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 356899999842 22 25889999999999999998764 3899999999999999999999999999
Q ss_pred eEeEEEeccC
Q 031309 128 QSVRLSWGRN 137 (161)
Q Consensus 128 ~~i~v~~a~~ 137 (161)
+.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=3.1e-12 Score=85.06 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=63.4
Q ss_pred CCcEEEEcCCCCCCC----------HHHHHHHhcccCCeEEEEEeCC--CcEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 031309 63 SNTTIFVGGLDPNVT----------DEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANRENAEEALHKLNGTVIGKQSV 130 (161)
Q Consensus 63 ~~~~l~V~nlp~~~~----------~~~l~~~f~~~g~v~~~~i~~~--~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i 130 (161)
+...|.+.|+-.... +++|++.|++||.|.++.+.++ +|++||+|.+.++|.+|+..|||..++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345688888743221 2477899999999999999875 6999999999999999999999999999999
Q ss_pred EEEeccC
Q 031309 131 RLSWGRN 137 (161)
Q Consensus 131 ~v~~a~~ 137 (161)
.|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-11 Score=83.01 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecC-HHHHHHHHHHhC--CceeCCeEeEEEe
Q 031309 59 EGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN-RENAEEALHKLN--GTVIGKQSVRLSW 134 (161)
Q Consensus 59 ~~~~~~~~l~V~nlp~~-~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~-~~~a~~ai~~l~--g~~~~g~~i~v~~ 134 (161)
-..+.++.|||+||+.. ++.++|+++|++||+|..|.+..+...|||.|.+ ..+|..|+..++ +..|.|..+.++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 34677899999999999 9999999999999999999999998899999999 899999999995 6788898888865
Q ss_pred cc
Q 031309 135 GR 136 (161)
Q Consensus 135 a~ 136 (161)
-.
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-11 Score=77.51 Aligned_cols=75 Identities=25% Similarity=0.409 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCC----C-CCH---HHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 031309 61 DSSNTTIFVGGLDP----N-VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRL 132 (161)
Q Consensus 61 ~~~~~~l~V~nlp~----~-~~~---~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v 132 (161)
.+++.+|+|.-.+. . ..+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 34566888887662 2 332 5789999999999999999766 8999999999999997 9999999999999
Q ss_pred EeccCC
Q 031309 133 SWGRNP 138 (161)
Q Consensus 133 ~~a~~~ 138 (161)
.++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 999864
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.8e-10 Score=72.28 Aligned_cols=73 Identities=26% Similarity=0.433 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCCCC------CCH---HHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 031309 61 DSSNTTIFVGGLDPN------VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVR 131 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~------~~~---~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~ 131 (161)
.+++.+|+|.-++.. ..+ .+|.+.|..||.|..+++..++ +||+|.+.++|.+||. |+|..+.|+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 345668999887643 332 4688999999999999999776 9999999999999997 999999999999
Q ss_pred EEecc
Q 031309 132 LSWGR 136 (161)
Q Consensus 132 v~~a~ 136 (161)
|.+..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98754
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.2e-08 Score=66.20 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccc-----CCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 134 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~~-----g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~ 134 (161)
.+.++|-+-|||..++.+.|+.++.++ |.+..+.+..|.+-|+|+|.+...|-+|.-+|+|.+|.|++|++.-
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 345678899999999999999999999 9999999999999999999999999999999999999999999863
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=4.5e-09 Score=77.05 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=54.6
Q ss_pred CHHHHHHHhcccCCeEEEEEeC----------CCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 77 TDEDLRQPFSQYGEIASVKIPV----------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 77 ~~~~l~~~f~~~g~v~~~~i~~----------~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
.+++|.+.|++||.|..+.++. .+|++||+|.+.++|.+|+..|||..+.|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999862 36899999999999999999999999999999999875
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.7e-06 Score=55.71 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCC
Q 031309 64 NTTIFVGGLDPNV-T----DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNP 138 (161)
Q Consensus 64 ~~~l~V~nlp~~~-~----~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~~~ 138 (161)
.++|+|.||+..+ . .+.++.+|..|+++......++-.-..|.|.+.++|.+|-..||+..+.|+.|+|-++.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4689999998753 2 2567999999999999988888778899999999999999999999999999999999865
Q ss_pred CC
Q 031309 139 AN 140 (161)
Q Consensus 139 ~~ 140 (161)
..
T Consensus 85 ~~ 86 (104)
T 1wey_A 85 HI 86 (104)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.00015 Score=46.56 Aligned_cols=74 Identities=24% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcc---c--CCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 62 SSNTTIFVGGLDPNVTDEDLRQPFSQ---Y--GEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 62 ~~~~~l~V~nlp~~~~~~~l~~~f~~---~--g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
....+|.|.|||..+.++.|+-+|++ - |.|..++... +-|+|+|.+...|+..+ +-..+.|+|..|.|...-
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVL-AQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHh-cCCcceecCeEEEEEcCC
Confidence 44678999999999999999999976 2 4888888764 88999999999999887 344678889999997654
Q ss_pred CC
Q 031309 137 NP 138 (161)
Q Consensus 137 ~~ 138 (161)
+.
T Consensus 83 ~~ 84 (104)
T 2dhx_A 83 PR 84 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.85 E-value=0.00013 Score=46.05 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=57.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhCCceeC---Ce--EeE
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIG---KQ--SVR 131 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~--------~g~afv~f~~~~~a~~ai~~l~g~~~~---g~--~i~ 131 (161)
++|.|++||+.++++++.+.++....+.-.....+ ...|+|.|.+.+++....+.++|..+. |. .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47899999999999999999999887665554332 368999999999999999999999873 22 234
Q ss_pred EEecc
Q 031309 132 LSWGR 136 (161)
Q Consensus 132 v~~a~ 136 (161)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=0.00018 Score=47.45 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=60.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCC-eEeEEEec
Q 031309 60 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGK-QSVRLSWG 135 (161)
Q Consensus 60 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g-~~i~v~~a 135 (161)
...+.+-|-|-++|.... ..+...|.+||.|.+........+-.|.|.++.+|++|+ ..||..++| --|-|.+.
T Consensus 20 ~~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp -CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 345577888999999864 567788999999999987666789999999999999999 679999985 56777664
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.70 E-value=0.00052 Score=43.55 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=47.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 031309 61 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL 120 (161)
Q Consensus 61 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l 120 (161)
....+.++| ++|....-.+|.++|+.||.|.--.|. ---|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid--DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID--DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE--TTEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc--CCeEEEEecCHHHHHHHHHhc
Confidence 445567777 999999999999999999965444443 478999999999999999876
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.33 E-value=0.00063 Score=43.21 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhCCceeC---Ce--Ee
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANRENAEEALHKLNGTVIG---KQ--SV 130 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~--------~g~afv~f~~~~~a~~ai~~l~g~~~~---g~--~i 130 (161)
..+|.|+.||+.++|+++.+.++..-.+.-...... ...|+|.|.+.++.....+.++|..+- |. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999999888887655422222211 367999999999999999999999873 22 34
Q ss_pred EEEecc
Q 031309 131 RLSWGR 136 (161)
Q Consensus 131 ~v~~a~ 136 (161)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566654
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.19 E-value=0.00062 Score=43.33 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~ 121 (161)
.+.++| ++|....-.+|.++|+.||.|.--.|. -.-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 345667 999999999999999999944433333 4789999999999999998774
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.91 E-value=0.00053 Score=55.40 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=41.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCc-EEEEEecCHHHHHHHH
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANRENAEEAL 117 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g-~afv~f~~~~~a~~ai 117 (161)
.++|||. .|...++.+|.++|++||+|..+.+..++| |+.|+|.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence 3789997 799999999999999999999999988765 9999999999988665
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.85 E-value=0.0014 Score=43.85 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=55.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeC-------------------CCcEEEEEecCHHHHHHHHHHhCCc
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPV-------------------GKGCGFVQFANRENAEEALHKLNGT 123 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~-~i~~-------------------~~g~afv~f~~~~~a~~ai~~l~g~ 123 (161)
..-|.|-++|...... +-+.|++||.|.+- .... ...+-.|.|.+..+|.+|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 4567888998887655 56789999988772 1111 2468899999999999999 79999
Q ss_pred eeCCeEeEEEecc
Q 031309 124 VIGKQSVRLSWGR 136 (161)
Q Consensus 124 ~~~g~~i~v~~a~ 136 (161)
.+.|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887765
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.50 E-value=0.0047 Score=41.86 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=34.8
Q ss_pred CcEEEEEecCHHHHHHHHHHh-CCceeCCeEeEEEeccC
Q 031309 100 KGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRN 137 (161)
Q Consensus 100 ~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~i~v~~a~~ 137 (161)
+|+++|+|.+.++|++|+..+ ||..++| .|.+.++..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 699999999999999999999 9999999 999998875
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.52 E-value=0.045 Score=37.07 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.9
Q ss_pred CcEEEEEecCHHHHHHHHHHhCCc
Q 031309 100 KGCGFVQFANRENAEEALHKLNGT 123 (161)
Q Consensus 100 ~g~afv~f~~~~~a~~ai~~l~g~ 123 (161)
+||+||+|.+.++|++|+..+++.
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhccc
Confidence 799999999999999999888764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.92 E-value=0.49 Score=38.60 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHHhC
Q 031309 64 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLN 121 (161)
Q Consensus 64 ~~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~ 121 (161)
...++|+ +|..+...+|.++|+.||.+ .|. ..+...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~-widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QIS-WIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEE-ECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEE-EEcCCeEEEEECCHHHHHHHHHHHH
Confidence 4567776 99899999999999999954 333 2346789999999999999998885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=85.16 E-value=2.9 Score=24.44 Aligned_cols=68 Identities=12% Similarity=0.304 Sum_probs=42.7
Q ss_pred EEEEcCC-CCCCCHHHHHHHhcccC-----CeEEEEEeCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 031309 66 TIFVGGL-DPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 136 (161)
Q Consensus 66 ~l~V~nl-p~~~~~~~l~~~f~~~g-----~v~~~~i~~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~i~v~~a~ 136 (161)
++||..= ...+...+|-.++..-+ .|-.+.+. ..|.||+... ..+..++..|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4556422 33466677777776443 46667765 4688888765 46778888999999999999988764
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.50 E-value=40 Score=23.28 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=32.2
Q ss_pred cEEEEcCCCC---------CCCHHHHHHHh--cccCCeEEEEEeCC---CcEEEEEecCH
Q 031309 65 TTIFVGGLDP---------NVTDEDLRQPF--SQYGEIASVKIPVG---KGCGFVQFANR 110 (161)
Q Consensus 65 ~~l~V~nlp~---------~~~~~~l~~~f--~~~g~v~~~~i~~~---~g~afv~f~~~ 110 (161)
..+.|-|+|. ..+..+|.+.| ..|.++.-..+... .|++.|.|.+-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 3566777776 25567888877 88987665555543 47899999954
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=41.01 E-value=45 Score=18.38 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecCHHHHHHHHHH
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHK 119 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~~~~a~~ai~~ 119 (161)
.++.|.++.=..-...++..+.. ..|..+.+....+-+.|.|.+.+....++..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 46788888776667888999998 8888888877677888888855666666653
No 225
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=35.58 E-value=53 Score=17.57 Aligned_cols=53 Identities=9% Similarity=0.217 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEecC---HHHHHHHHH
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---RENAEEALH 118 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~~---~~~a~~ai~ 118 (161)
.+.|.++.-..-...++..+.....|..+.+....+-+.|.|.. .++...++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 56677776555567788889888888888887777888888843 344445553
No 226
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=34.11 E-value=9.4 Score=25.66 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=16.8
Q ss_pred HHHHHHhcccCCeEEEEEeCCCcEEEEEec
Q 031309 79 EDLRQPFSQYGEIASVKIPVGKGCGFVQFA 108 (161)
Q Consensus 79 ~~l~~~f~~~g~v~~~~i~~~~g~afv~f~ 108 (161)
+++.++|...|.|... ...+||+||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwf--n~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF--NVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE--ETTTTEEEEEEE
T ss_pred CcccccccceeEEEEE--ECCCCeeEEeeC
Confidence 3455666666766543 345899999865
No 227
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.52 E-value=63 Score=23.71 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=23.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEE
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 95 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~ 95 (161)
.-+.|+|+|+.++...|..++.. ..+....
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 45789999999999999988876 5554443
No 228
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.69 E-value=1e+02 Score=19.24 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.8
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCc
Q 031309 90 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGT 123 (161)
Q Consensus 90 ~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~ 123 (161)
.|.++..+.+ +||-||+=.+..++..|+..+...
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5777766654 899999999999999998666543
No 229
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.55 E-value=1.3e+02 Score=17.97 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=26.5
Q ss_pred CeEEEEEeCC-CcEEEEEecCHHHHHHHHHHhCCc
Q 031309 90 EIASVKIPVG-KGCGFVQFANRENAEEALHKLNGT 123 (161)
Q Consensus 90 ~v~~~~i~~~-~g~afv~f~~~~~a~~ai~~l~g~ 123 (161)
.|..+.++.. .||-||++...++...++....|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 4667766644 799999999998888888777664
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.15 E-value=32 Score=25.43 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=24.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEE
Q 031309 65 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 96 (161)
Q Consensus 65 ~~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i 96 (161)
....|+|||+.++...|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 35789999999999999988875444554433
No 231
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.22 E-value=1.2e+02 Score=16.38 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEec----CHHHHHHHHHH
Q 031309 66 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NRENAEEALHK 119 (161)
Q Consensus 66 ~l~V~nlp~~~~~~~l~~~f~~~g~v~~~~i~~~~g~afv~f~----~~~~a~~ai~~ 119 (161)
.+.|.++.-..-...++..+.....|..+.+....+-+.|.|. +.++...++..
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667777655455778888988888888887776788889885 45666666654
Done!