BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031311
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 56 FCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNN 115
FC V+ FL + LP Q+V VN +R A F S L+A E S +L+D++
Sbjct: 25 FCSKVRAFLDFHALPYQVVEVNPVLR-----AEIKFSSYRKVPILVAQEGESSQQLNDSS 79
Query: 116 QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT 159
V S +L G P ++ Y A ++VN K +T
Sbjct: 80 ------VIISALKTYL-VSGQPLEEIITYYPAMKAVNDQGKEVT 116
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 42 AFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKT 85
A V P V+ VCV L W T+P +V +E+ +KK++
Sbjct: 118 ADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQS 161
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 42 AFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKT 85
A V P V+ VCV L W T+P V +E+ +KK++
Sbjct: 118 ADVTPYVIAGKSVRITVCVNNELNWQTIPPGXVITDENGKKKQS 161
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 42 AFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKT 85
A V P V+ VCV L W T+P V +E+ +KK++
Sbjct: 118 ADVTPYVIAGKSVRITVCVNNELNWQTIPPGXVITDENGKKKQS 161
>pdb|3QQ3|A Chain A, Crystal Structure Of Swine Major Histocompatibility
Complex Class I Sla-1 0401 And Identification Of 2009
Pandemic Swine-Origin Influenza A H1n1 Virus Cytotoxic
T Lymphocyte Epitope Peptides
pdb|3QQ3|D Chain D, Crystal Structure Of Swine Major Histocompatibility
Complex Class I Sla-1 0401 And Identification Of 2009
Pandemic Swine-Origin Influenza A H1n1 Virus Cytotoxic
T Lymphocyte Epitope Peptides
pdb|3QQ4|A Chain A, Crystal Structure Of Swine Major Histocompatibility
Complex Class I Sla-1 0401 And Identification Of 2009
Pandemic Swine-Origin Influenza A H1n1 Virus Cytotoxic
T Lymphocyte Epitope Peptides
Length = 275
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 64 LPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGH 99
+PW+ Q + E+ K+TA ++G G TL+G+
Sbjct: 49 VPWIQQEGQEYWDRETRNVKETAQTYGVGLNTLRGY 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,291,334
Number of Sequences: 62578
Number of extensions: 162639
Number of successful extensions: 414
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)